AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017781.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017781.01.T01 MTR_3g111980 96.774 310 10 0 1 310 1 310 0.0 603
MsG0380017781.01.T01 MTR_3g111990 76.452 310 71 1 1 310 1 308 1.39e-173 483
MsG0380017781.01.T01 MTR_3g116840 72.876 306 81 1 5 310 9 312 1.66e-167 468
MsG0380017781.01.T01 MTR_5g020740 70.227 309 90 1 2 310 3 309 1.20e-157 442
MsG0380017781.01.T01 MTR_4g070370 61.765 306 115 1 3 308 6 309 9.08e-139 395
MsG0380017781.01.T01 MTR_4g070340 58.442 308 126 1 1 308 3 308 1.69e-132 380
MsG0380017781.01.T01 MTR_4g070340 57.468 308 124 2 1 308 3 303 3.31e-127 366
MsG0380017781.01.T01 MTR_5g020800 57.321 321 123 4 1 310 1 318 5.95e-124 357
MsG0380017781.01.T01 MTR_5g020760 57.009 321 124 4 1 310 1 318 1.81e-123 356
MsG0380017781.01.T01 MTR_4g070340 58.300 247 101 1 62 308 15 259 2.82e-104 306
MsG0380017781.01.T01 MTR_5g020760 58.647 266 97 3 1 255 1 264 5.06e-104 305
MsG0380017781.01.T01 MTR_4g070360 49.032 310 154 2 3 310 2 309 1.93e-103 305
MsG0380017781.01.T01 MTR_5g027290 46.645 313 155 5 4 309 3 310 1.93e-93 280
MsG0380017781.01.T01 MTR_8g071130 46.178 314 160 4 3 310 2 312 1.58e-92 277
MsG0380017781.01.T01 MTR_3g008100 45.338 311 160 5 2 310 3 305 1.42e-90 273
MsG0380017781.01.T01 MTR_5g027240 46.452 310 154 5 4 306 3 307 1.87e-90 272
MsG0380017781.01.T01 MTR_3g008140 46.774 310 156 5 2 310 3 304 1.75e-89 270
MsG0380017781.01.T01 MTR_3g007970 44.839 310 163 4 2 310 3 305 2.06e-87 265
MsG0380017781.01.T01 MTR_3g008100 44.373 311 156 5 2 310 3 298 3.11e-86 261
MsG0380017781.01.T01 MTR_1g093720 39.159 309 183 3 4 310 13 318 6.72e-75 234
MsG0380017781.01.T01 MTR_3g008100 45.641 195 97 4 2 194 3 190 2.98e-49 164
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017781.01.T01 AT4G39230 72.258 310 84 1 1 310 1 308 1.86e-166 465
MsG0380017781.01.T01 AT1G75280 71.987 307 85 1 3 309 4 309 3.85e-157 441
MsG0380017781.01.T01 AT1G75290 67.532 308 100 0 2 309 3 310 2.14e-152 430
MsG0380017781.01.T01 AT1G75290 67.532 308 100 0 2 309 30 337 1.03e-151 429
MsG0380017781.01.T01 AT1G75300 63.043 322 102 3 2 309 3 321 2.89e-141 402
MsG0380017781.01.T01 AT1G19540 60.390 308 120 1 5 310 3 310 2.67e-129 371
MsG0380017781.01.T01 AT1G19540 62.451 253 93 1 5 255 3 255 4.82e-105 307
MsG0380017781.01.T01 AT4G34540 47.727 308 154 2 3 310 6 306 1.10e-99 295
MsG0380017781.01.T01 AT1G32100 44.586 314 164 4 3 310 8 317 1.19e-83 255
MsG0380017781.01.T01 AT4G13660 44.762 315 164 4 2 310 7 317 1.21e-83 255
MsG0380017781.01.T01 AT4G13660 44.762 315 164 4 2 310 7 317 1.21e-83 255

Find 93 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAATAGCACGTCGAATTT+TGG 0.137471 3:-100598716 None:intergenic
ACATTGAACAAATGGAATTT+AGG 0.142995 3:+100599831 MsG0380017781.01.T01:three_prime_UTR
TTACCAGCCCTCTTAATTAT+AGG 0.195982 3:-100597017 None:intergenic
TTGAATGAATAAATGTTCTT+TGG 0.240740 3:-100599149 None:intergenic
TTGTCAAAATGTTGCCTTCT+TGG 0.255177 3:+100599682 MsG0380017781.01.T01:three_prime_UTR
TGAATGAATAAATGTTCTTT+GGG 0.284153 3:-100599148 None:intergenic
CTCAATAATTTCAAAACTTT+AGG 0.291956 3:+100597272 MsG0380017781.01.T01:CDS
CATTGAACAAATGGAATTTA+GGG 0.292864 3:+100599832 MsG0380017781.01.T01:three_prime_UTR
GAAGATTATCGCTGCAATTA+AGG 0.319373 3:+100597601 MsG0380017781.01.T01:CDS
TATATGACGACTTTGTCTTT+TGG 0.336858 3:-100598835 None:intergenic
CAAAACTTTAGGCGTCAATT+TGG 0.338853 3:+100597283 MsG0380017781.01.T01:CDS
ATATGAGTTGTTTGTTACTT+TGG 0.343840 3:+100599548 MsG0380017781.01.T01:three_prime_UTR
AAAGACAAAGTCGTCATATA+TGG 0.346716 3:+100598838 MsG0380017781.01.T01:CDS
TTTGTGATTGAGCCATCTTT+TGG 0.365839 3:+100599419 MsG0380017781.01.T01:CDS
ACAGTTGTGTACTTGACATC+TGG 0.375136 3:-100599464 None:intergenic
GCCTTGTGGGAGAAGAAGAT+TGG 0.381870 3:+100599182 MsG0380017781.01.T01:CDS
TGGATCATCCACAGCTCTAA+TGG 0.384230 3:-100599093 None:intergenic
ATCGAAAGTAATTAAGGAAC+AGG 0.389535 3:+100597088 MsG0380017781.01.T01:five_prime_UTR
GTGTCTAGCAACTACTTTGC+TGG 0.392084 3:+100598763 MsG0380017781.01.T01:CDS
GAATTGATCGAAAGTAATTA+AGG 0.402098 3:+100597082 MsG0380017781.01.T01:five_prime_UTR
ATCGATAATACCACGTTGAT+TGG 0.408391 3:-100599359 None:intergenic
GGAGGTGGGGCGAATTGTCC+TGG 0.408477 3:-100598811 None:intergenic
AGAATCTTATTCAATGTCCT+TGG 0.431387 3:-100599113 None:intergenic
CAGGGGAAACATTGAACAAA+TGG 0.436351 3:+100599823 MsG0380017781.01.T01:three_prime_UTR
CAACGAGCTTGTAGCCTTGT+GGG 0.437114 3:+100599169 MsG0380017781.01.T01:CDS
AAACTTCTCAAGGATATTCA+AGG 0.440563 3:+100599239 MsG0380017781.01.T01:CDS
TTTCATTTGCTATGTAAACT+TGG 0.451614 3:+100599616 MsG0380017781.01.T01:three_prime_UTR
TAAGGAGGCTGGTAACGTTA+AGG 0.454571 3:+100597619 MsG0380017781.01.T01:CDS
TTGAGGAGATTAGCCTTGGC+AGG 0.461709 3:-100597254 None:intergenic
AATACCACGTTGATTGGAAT+AGG 0.469491 3:-100599353 None:intergenic
TCCTTGAGAAGTTTATCCTC+TGG 0.484267 3:-100599230 None:intergenic
CTCCCCACATTAGCTCAGCC+AGG 0.490923 3:+100598793 MsG0380017781.01.T01:CDS
GATCAGCGAGGGTGGATTCA+CGG 0.492277 3:-100597232 None:intergenic
TGCTTAGTCAAACTATGAGC+AGG 0.501678 3:+100599804 MsG0380017781.01.T01:three_prime_UTR
CCAGCAAAATCTGCATTTGA+AGG 0.504040 3:+100598688 MsG0380017781.01.T01:CDS
GGTAACACGCGTTGCATCCA+TGG 0.506338 3:+100597109 MsG0380017781.01.T01:exon
TTGCCTATAATTAAGAGGGC+TGG 0.507755 3:+100597014 MsG0380017781.01.T01:five_prime_UTR
TTCACGGACCAATGCAAAAG+TGG 0.510674 3:-100597216 None:intergenic
TACTTCAAACGAACTGATCA+AGG 0.512935 3:-100599496 None:intergenic
ATCGCTGCAATTAAGGAGGC+TGG 0.516620 3:+100597608 MsG0380017781.01.T01:CDS
GTAGAAGCAAGTGCAAAAGC+TGG 0.517859 3:+100597188 MsG0380017781.01.T01:CDS
GGTAGGCCACGCTCTGATTG+AGG 0.518193 3:+100597571 MsG0380017781.01.T01:CDS
ATTATTGAGGAGATTAGCCT+TGG 0.522079 3:-100597258 None:intergenic
TCCAGAGGATAAACTTCTCA+AGG 0.522426 3:+100599229 MsG0380017781.01.T01:CDS
CCTTGTGGGAGAAGAAGATT+GGG 0.523149 3:+100599183 MsG0380017781.01.T01:CDS
CACCACTCGGTGTTTGTGAA+AGG 0.525734 3:+100599383 MsG0380017781.01.T01:CDS
TTGTCCTGGCTGAGCTAATG+TGG 0.535528 3:-100598797 None:intergenic
TGTCTAGCAACTACTTTGCT+GGG 0.539689 3:+100598764 MsG0380017781.01.T01:CDS
TAAGCCTCAACCCCAAAAGA+TGG 0.540084 3:-100599431 None:intergenic
CCCAATCTTCTTCTCCCACA+AGG 0.547082 3:-100599183 None:intergenic
CAGTTGTGTACTTGACATCT+GGG 0.555264 3:-100599463 None:intergenic
GTTGCTAGACACATATGTGT+AGG 0.558044 3:-100598752 None:intergenic
TCAACGAGCTTGTAGCCTTG+TGG 0.567546 3:+100599168 MsG0380017781.01.T01:CDS
GAATGAATAAATGTTCTTTG+GGG 0.568027 3:-100599147 None:intergenic
AATGAATAAATGTTCTTTGG+GGG 0.568257 3:-100599146 None:intergenic
TCTGTATGATCATGAGAACT+TGG 0.570219 3:+100597511 MsG0380017781.01.T01:CDS
AACATTCACCATTAGAGCTG+TGG 0.581419 3:+100599085 MsG0380017781.01.T01:CDS
AGTAATCAAGCAGGTAGATG+TGG 0.585296 3:+100597538 MsG0380017781.01.T01:CDS
GGTAGATGTGGTCATATCTA+CGG 0.586142 3:+100597550 MsG0380017781.01.T01:CDS
TGTCCTGGCTGAGCTAATGT+GGG 0.586984 3:-100598796 None:intergenic
CTTGGTGAAAGTAATCAAGC+AGG 0.588181 3:+100597529 MsG0380017781.01.T01:CDS
TTGCTAGACACATATGTGTA+GGG 0.589350 3:-100598751 None:intergenic
GCTCATAGTTTGACTAAGCA+CGG 0.593610 3:-100599801 None:intergenic
CACCCTCGCTGATCCTGCCA+AGG 0.595340 3:+100597241 MsG0380017781.01.T01:CDS
GCTTAGTCAAACTATGAGCA+GGG 0.598406 3:+100599805 MsG0380017781.01.T01:three_prime_UTR
AAAGTCGTCATATATGGCGA+TGG 0.599327 3:+100598844 MsG0380017781.01.T01:CDS
GGTATTATCGATCCACCACT+CGG 0.602530 3:+100599370 MsG0380017781.01.T01:CDS
CAGCAAAATCTGCATTTGAA+GGG 0.606294 3:+100598689 MsG0380017781.01.T01:CDS
CGACGTGCTATTGAAGCGGA+AGG 0.614282 3:+100598724 MsG0380017781.01.T01:CDS
AAACTCAGATGACACCAAGA+AGG 0.618173 3:-100599696 None:intergenic
TTAGAGCTGTGGATGATCCA+AGG 0.628287 3:+100599096 MsG0380017781.01.T01:CDS
ATTGAACAAATGGAATTTAG+GGG 0.628382 3:+100599833 MsG0380017781.01.T01:three_prime_UTR
AATTCGACGTGCTATTGAAG+CGG 0.628628 3:+100598720 MsG0380017781.01.T01:CDS
CTTTCACAAACACCGAGTGG+TGG 0.628695 3:-100599382 None:intergenic
TCACGGACCAATGCAAAAGT+GGG 0.629925 3:-100597215 None:intergenic
TTCAACAAGGAAGATGACAT+TGG 0.630695 3:+100599062 MsG0380017781.01.T01:CDS
CTTGGCAGGATCAGCGAGGG+TGG 0.631457 3:-100597240 None:intergenic
ACGTCATTCCCAAATTCCGA+AGG 0.641793 3:-100598643 None:intergenic
ATCGGAGGAACAGGTTACAT+CGG 0.642196 3:+100597155 MsG0380017781.01.T01:CDS
ATGTACAGCGGTGTTCAACA+AGG 0.647710 3:+100599049 MsG0380017781.01.T01:intron
GATGTGGTCATATCTACGGT+AGG 0.649142 3:+100597554 MsG0380017781.01.T01:CDS
CTTGATCCTCAATCAGAGCG+TGG 0.652635 3:-100597577 None:intergenic
TGACGTTGATCGTGTCCATG+CGG 0.662937 3:+100598660 MsG0380017781.01.T01:CDS
AGCCTTGGCAGGATCAGCGA+GGG 0.665918 3:-100597243 None:intergenic
GATTATCGCTGCAATTAAGG+AGG 0.668758 3:+100597604 MsG0380017781.01.T01:CDS
CTTAGTCAAACTATGAGCAG+GGG 0.671198 3:+100599806 MsG0380017781.01.T01:three_prime_UTR
CACCTTTCACAAACACCGAG+TGG 0.683877 3:-100599385 None:intergenic
TATGGCGATGGAAATCCCAA+AGG 0.691099 3:+100598856 MsG0380017781.01.T01:CDS
AGATGTCAAGTACACAACTG+TGG 0.707472 3:+100599466 MsG0380017781.01.T01:CDS
TAGCCTTGGCAGGATCAGCG+AGG 0.707487 3:-100597244 None:intergenic
TGTCAAGTACACAACTGTGG+AGG 0.712034 3:+100599469 MsG0380017781.01.T01:CDS
GTCCTGGCTGAGCTAATGTG+GGG 0.743725 3:-100598795 None:intergenic
GGCTCCTATTCCAATCAACG+TGG 0.763745 3:+100599349 MsG0380017781.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATCATAAAAATGATATAT+GGG + Chr3:100599862-100599881 MsG0380017781.01.T01:three_prime_UTR 10.0%
!! TAAATCATAAAAATGATATA+TGG + Chr3:100599861-100599880 MsG0380017781.01.T01:three_prime_UTR 10.0%
!! TAATAATATTAAGTTTGAAA+TGG + Chr3:100597466-100597485 MsG0380017781.01.T01:intron 10.0%
!!! ATGAATAGTTTTATTTTTTA+AGG + Chr3:100598310-100598329 MsG0380017781.01.T01:intron 10.0%
!! AATATAATCAGAATATTAGT+TGG - Chr3:100598404-100598423 None:intergenic 15.0%
!! AATCAAATTCATTAAAAAAG+TGG - Chr3:100597335-100597354 None:intergenic 15.0%
!! AATCATAAAAATGATATATG+GGG + Chr3:100599863-100599882 MsG0380017781.01.T01:three_prime_UTR 15.0%
!! GGAATAAATATAAAATCAAA+TGG + Chr3:100598125-100598144 MsG0380017781.01.T01:intron 15.0%
!!! AACCTTTTTTGAATATTATT+TGG - Chr3:100599655-100599674 None:intergenic 15.0%
!!! AATAGTTTTATTTTTTGTTG+AGG + Chr3:100598344-100598363 MsG0380017781.01.T01:intron 15.0%
!!! ACCTTTTTTGAATATTATTT+GGG - Chr3:100599654-100599673 None:intergenic 15.0%
!!! ATAGTTTTATTTTTTGTTGA+GGG + Chr3:100598345-100598364 MsG0380017781.01.T01:intron 15.0%
!!! TCTGATTATATTTTCAATAA+AGG + Chr3:100598412-100598431 MsG0380017781.01.T01:intron 15.0%
!!! TTTAATTTGAGAGTTTTTTA+GGG - Chr3:100598565-100598584 None:intergenic 15.0%
!! AAAAAATGTGAAAAAGACAA+AGG - Chr3:100597919-100597938 None:intergenic 20.0%
!! AAAAATGTGAAAAAGACAAA+GGG - Chr3:100597918-100597937 None:intergenic 20.0%
!! AAATTCATTAAAAAAGTGGA+AGG - Chr3:100597331-100597350 None:intergenic 20.0%
!! AATGGTAATTAAATTATTGC+AGG + Chr3:100597484-100597503 MsG0380017781.01.T01:intron 20.0%
!! ACCCAAATAATATTCAAAAA+AGG + Chr3:100599650-100599669 MsG0380017781.01.T01:three_prime_UTR 20.0%
!! ATGCATCTAGTAATTTAAAA+AGG + Chr3:100598090-100598109 MsG0380017781.01.T01:intron 20.0%
!! ATGGTAATTAAATTATTGCA+GGG + Chr3:100597485-100597504 MsG0380017781.01.T01:intron 20.0%
!! CTCAATAATTTCAAAACTTT+AGG + Chr3:100597272-100597291 MsG0380017781.01.T01:CDS 20.0%
!! TGAATGAATAAATGTTCTTT+GGG - Chr3:100599151-100599170 None:intergenic 20.0%
!! TTAAAAAGGAGTTTACATTT+AGG + Chr3:100598104-100598123 MsG0380017781.01.T01:intron 20.0%
!! TTGAATGAATAAATGTTCTT+TGG - Chr3:100599152-100599171 None:intergenic 20.0%
!! TTTAATACACATACAAACAA+AGG - Chr3:100598001-100598020 None:intergenic 20.0%
!!! AATTTTGCCTATAATTAAGA+GGG + Chr3:100597010-100597029 MsG0380017781.01.T01:five_prime_UTR 20.0%
!!! CTAAAGTTTTGAAATTATTG+AGG - Chr3:100597274-100597293 None:intergenic 20.0%
!!! GTTTAATTTGAGAGTTTTTT+AGG - Chr3:100598566-100598585 None:intergenic 20.0%
!!! TAATTTTGCCTATAATTAAG+AGG + Chr3:100597009-100597028 MsG0380017781.01.T01:five_prime_UTR 20.0%
!!! TAGTTTTATTTTTTGTTGAG+GGG + Chr3:100598346-100598365 MsG0380017781.01.T01:intron 20.0%
!!! TCATTTTCTTAAATCATTAC+CGG - Chr3:100598903-100598922 None:intergenic 20.0%
! AAAATGTGAAAAAGACAAAG+GGG - Chr3:100597917-100597936 None:intergenic 25.0%
! AAGAATAGTTAGTACTACTA+CGG + Chr3:100598374-100598393 MsG0380017781.01.T01:intron 25.0%
! AATGAATAAATGTTCTTTGG+GGG - Chr3:100599149-100599168 None:intergenic 25.0%
! ACATTGAACAAATGGAATTT+AGG + Chr3:100599831-100599850 MsG0380017781.01.T01:three_prime_UTR 25.0%
! AGTATATGAAAATGTTTGCA+AGG - Chr3:100598288-100598307 None:intergenic 25.0%
! ATATCGTGTTTGTATATCAT+TGG + Chr3:100597442-100597461 MsG0380017781.01.T01:intron 25.0%
! ATTGAACAAATGGAATTTAG+GGG + Chr3:100599833-100599852 MsG0380017781.01.T01:three_prime_UTR 25.0%
! CATTGAACAAATGGAATTTA+GGG + Chr3:100599832-100599851 MsG0380017781.01.T01:three_prime_UTR 25.0%
! CATTTGGATTATGACTAAAT+GGG - Chr3:100597778-100597797 None:intergenic 25.0%
! GAATGAATAAATGTTCTTTG+GGG - Chr3:100599150-100599169 None:intergenic 25.0%
! GAATTGATCGAAAGTAATTA+AGG + Chr3:100597082-100597101 MsG0380017781.01.T01:five_prime_UTR 25.0%
! TCATTTGGATTATGACTAAA+TGG - Chr3:100597779-100597798 None:intergenic 25.0%
! TGGTAATTAAATTATTGCAG+GGG + Chr3:100597486-100597505 MsG0380017781.01.T01:intron 25.0%
! TTACATATTTCAAGACAAGT+TGG + Chr3:100598028-100598047 MsG0380017781.01.T01:intron 25.0%
!! AAAAGCAAGATTTTGTTCAT+CGG + Chr3:100597137-100597156 MsG0380017781.01.T01:CDS 25.0%
!! ATATGAGTTGTTTGTTACTT+TGG + Chr3:100599548-100599567 MsG0380017781.01.T01:three_prime_UTR 25.0%
!!! CAACTCAATTCGTTTTTTTT+TGG - Chr3:100598537-100598556 None:intergenic 25.0%
!!! TTTCATTTGCTATGTAAACT+TGG + Chr3:100599616-100599635 MsG0380017781.01.T01:three_prime_UTR 25.0%
AAACCAGAAAAAAGGGTAAA+AGG - Chr3:100597717-100597736 None:intergenic 30.0%
AAACTTCTCAAGGATATTCA+AGG + Chr3:100599239-100599258 MsG0380017781.01.T01:CDS 30.0%
AAAGACAAAGTCGTCATATA+TGG + Chr3:100598838-100598857 MsG0380017781.01.T01:CDS 30.0%
AAGGTAACAAACTAACATGT+TGG + Chr3:100598875-100598894 MsG0380017781.01.T01:intron 30.0%
AGAATCTTATTCAATGTCCT+TGG - Chr3:100599116-100599135 None:intergenic 30.0%
ATCGAAAGTAATTAAGGAAC+AGG + Chr3:100597088-100597107 MsG0380017781.01.T01:five_prime_UTR 30.0%
GAGTTAATATTTCCAGCTAA+AGG - Chr3:100597418-100597437 None:intergenic 30.0%
GGTAATTAAATTATTGCAGG+GGG + Chr3:100597487-100597506 MsG0380017781.01.T01:intron 30.0%
TATTTCTTGTCTATGTACAG+CGG + Chr3:100599037-100599056 MsG0380017781.01.T01:intron 30.0%
TCGTTTGAACACAAAGTTAA+AGG - Chr3:100598500-100598519 None:intergenic 30.0%
TGAAATAAGAAGCAACAAGT+AGG - Chr3:100599601-100599620 None:intergenic 30.0%
TTCATTAAAAAAGTGGAAGG+AGG - Chr3:100597328-100597347 None:intergenic 30.0%
! TATATGACGACTTTGTCTTT+TGG - Chr3:100598838-100598857 None:intergenic 30.0%
! TATATTCCCTTTTATTGCAG+AGG + Chr3:100599328-100599347 MsG0380017781.01.T01:intron 30.0%
!! AAGTTGGTAGTATCAATTAG+GGG + Chr3:100598044-100598063 MsG0380017781.01.T01:intron 30.0%
!! ACAAGTTGGTAGTATCAATT+AGG + Chr3:100598042-100598061 MsG0380017781.01.T01:intron 30.0%
!! ACATGTTAGTTTGTTACCTT+TGG - Chr3:100598875-100598894 None:intergenic 30.0%
!! CAAGTTGGTAGTATCAATTA+GGG + Chr3:100598043-100598062 MsG0380017781.01.T01:intron 30.0%
!! CATGTTAGTTTGTTACCTTT+GGG - Chr3:100598874-100598893 None:intergenic 30.0%
!! GAAAAAACTCTAAAGCAGTT+TGG + Chr3:100597052-100597071 MsG0380017781.01.T01:five_prime_UTR 30.0%
!!! AGATTTTTTCCTTCGGAATT+TGG + Chr3:100598634-100598653 MsG0380017781.01.T01:CDS 30.0%
!!! GATTTTTTCCTTCGGAATTT+GGG + Chr3:100598635-100598654 MsG0380017781.01.T01:CDS 30.0%
!!! TGGAAGAAAAGTTTTTTCGA+CGG - Chr3:100599213-100599232 None:intergenic 30.0%
!!! TTTGAGAGTTTTTTAGGGTT+CGG - Chr3:100598560-100598579 None:intergenic 30.0%
!!! TTTTACCCTTTTTTCTGGTT+TGG + Chr3:100597716-100597735 MsG0380017781.01.T01:intron 30.0%
AAGAAGCCAAACCAGAAAAA+AGG - Chr3:100597725-100597744 None:intergenic 35.0%
AGAAGCCAAACCAGAAAAAA+GGG - Chr3:100597724-100597743 None:intergenic 35.0%
AGGAGGAATATATTACGTAC+AGG - Chr3:100597311-100597330 None:intergenic 35.0%
ATCGATAATACCACGTTGAT+TGG - Chr3:100599362-100599381 None:intergenic 35.0%
CAAAACTTTAGGCGTCAATT+TGG + Chr3:100597283-100597302 MsG0380017781.01.T01:CDS 35.0%
CAAATTAAACTCTTGCTGGT+AGG + Chr3:100598576-100598595 MsG0380017781.01.T01:intron 35.0%
CAGCAAAATCTGCATTTGAA+GGG + Chr3:100598689-100598708 MsG0380017781.01.T01:CDS 35.0%
CTCTCAAATTAAACTCTTGC+TGG + Chr3:100598572-100598591 MsG0380017781.01.T01:intron 35.0%
GAAGATTATCGCTGCAATTA+AGG + Chr3:100597601-100597620 MsG0380017781.01.T01:CDS 35.0%
GGAGGAATATATTACGTACA+GGG - Chr3:100597310-100597329 None:intergenic 35.0%
TACTTCAAACGAACTGATCA+AGG - Chr3:100599499-100599518 None:intergenic 35.0%
TCTGTATGATCATGAGAACT+TGG + Chr3:100597511-100597530 MsG0380017781.01.T01:CDS 35.0%
TTACCAGCCCTCTTAATTAT+AGG - Chr3:100597020-100597039 None:intergenic 35.0%
TTCAACAAGGAAGATGACAT+TGG + Chr3:100599062-100599081 MsG0380017781.01.T01:CDS 35.0%
TTGCTAGACACATATGTGTA+GGG - Chr3:100598754-100598773 None:intergenic 35.0%
TTGTCAAAATGTTGCCTTCT+TGG + Chr3:100599682-100599701 MsG0380017781.01.T01:three_prime_UTR 35.0%
! AAGGGGTATACATATATGGA+CGG - Chr3:100597900-100597919 None:intergenic 35.0%
! AATACCACGTTGATTGGAAT+AGG - Chr3:100599356-100599375 None:intergenic 35.0%
! CGAAAAAACTTTTCTTCCAG+AGG + Chr3:100599214-100599233 MsG0380017781.01.T01:CDS 35.0%
! GACAAAGGGGTATACATATA+TGG - Chr3:100597904-100597923 None:intergenic 35.0%
! TTCAATAGCACGTCGAATTT+TGG - Chr3:100598719-100598738 None:intergenic 35.0%
! TTGTGATTGAGCCATCTTTT+GGG + Chr3:100599420-100599439 MsG0380017781.01.T01:CDS 35.0%
! TTTGTGATTGAGCCATCTTT+TGG + Chr3:100599419-100599438 MsG0380017781.01.T01:CDS 35.0%
!! ATTATTGAGGAGATTAGCCT+TGG - Chr3:100597261-100597280 None:intergenic 35.0%
!! GCTGGTAGGAATTTTAACAT+TGG + Chr3:100598590-100598609 MsG0380017781.01.T01:intron 35.0%
!! TATCAATTAGGGGCATGTTT+TGG + Chr3:100598054-100598073 MsG0380017781.01.T01:intron 35.0%
AAACTCAGATGACACCAAGA+AGG - Chr3:100599699-100599718 None:intergenic 40.0%
AAAGTCGTCATATATGGCGA+TGG + Chr3:100598844-100598863 MsG0380017781.01.T01:CDS 40.0%
AAAGTGGACAGTCACAATCA+TGG + Chr3:100598224-100598243 MsG0380017781.01.T01:intron 40.0%
AACATTCACCATTAGAGCTG+TGG + Chr3:100599085-100599104 MsG0380017781.01.T01:CDS 40.0%
ACAAACTAACATGTTGGCAC+CGG + Chr3:100598881-100598900 MsG0380017781.01.T01:intron 40.0%
ACAGTTGTGTACTTGACATC+TGG - Chr3:100599467-100599486 None:intergenic 40.0%
AGATGTCAAGTACACAACTG+TGG + Chr3:100599466-100599485 MsG0380017781.01.T01:CDS 40.0%
AGTAATCAAGCAGGTAGATG+TGG + Chr3:100597538-100597557 MsG0380017781.01.T01:CDS 40.0%
ATAGGAGCCTCTGCAATAAA+AGG - Chr3:100599338-100599357 None:intergenic 40.0%
CAGGGGAAACATTGAACAAA+TGG + Chr3:100599823-100599842 MsG0380017781.01.T01:three_prime_UTR 40.0%
CAGTTGTGTACTTGACATCT+GGG - Chr3:100599466-100599485 None:intergenic 40.0%
CCAGCAAAATCTGCATTTGA+AGG + Chr3:100598688-100598707 MsG0380017781.01.T01:CDS 40.0%
CTTAGTCAAACTATGAGCAG+GGG + Chr3:100599806-100599825 MsG0380017781.01.T01:three_prime_UTR 40.0%
CTTGGTGAAAGTAATCAAGC+AGG + Chr3:100597529-100597548 MsG0380017781.01.T01:CDS 40.0%
GATTATCGCTGCAATTAAGG+AGG + Chr3:100597604-100597623 MsG0380017781.01.T01:CDS 40.0%
GCTCATAGTTTGACTAAGCA+CGG - Chr3:100599804-100599823 None:intergenic 40.0%
GCTTAGTCAAACTATGAGCA+GGG + Chr3:100599805-100599824 MsG0380017781.01.T01:three_prime_UTR 40.0%
GGTAGATGTGGTCATATCTA+CGG + Chr3:100597550-100597569 MsG0380017781.01.T01:CDS 40.0%
GGTATACATATATGGACGGA+GGG - Chr3:100597896-100597915 None:intergenic 40.0%
GTTGCTAGACACATATGTGT+AGG - Chr3:100598755-100598774 None:intergenic 40.0%
TAAGAAGCAACAAGTAGGAG+AGG - Chr3:100599596-100599615 None:intergenic 40.0%
TAGGAGCCTCTGCAATAAAA+GGG - Chr3:100599337-100599356 None:intergenic 40.0%
TCATGTACACCACACAAAAG+TGG + Chr3:100598208-100598227 MsG0380017781.01.T01:intron 40.0%
TCCAGAGGATAAACTTCTCA+AGG + Chr3:100599229-100599248 MsG0380017781.01.T01:CDS 40.0%
TCCGAAGGAAAAAATCTCTG+CGG - Chr3:100598631-100598650 None:intergenic 40.0%
TCCTTGAGAAGTTTATCCTC+TGG - Chr3:100599233-100599252 None:intergenic 40.0%
TGCTTAGTCAAACTATGAGC+AGG + Chr3:100599804-100599823 MsG0380017781.01.T01:three_prime_UTR 40.0%
TGTCTAGCAACTACTTTGCT+GGG + Chr3:100598764-100598783 MsG0380017781.01.T01:CDS 40.0%
TGTGTCAAAGTCCAAATTGC+CGG - Chr3:100598262-100598281 None:intergenic 40.0%
TTGCCTATAATTAAGAGGGC+TGG + Chr3:100597014-100597033 MsG0380017781.01.T01:five_prime_UTR 40.0%
! AATTCGACGTGCTATTGAAG+CGG + Chr3:100598720-100598739 MsG0380017781.01.T01:CDS 40.0%
! AGCAAGATTTTGTTCATCGG+AGG + Chr3:100597140-100597159 MsG0380017781.01.T01:CDS 40.0%
! ATGACGACTTTGTCTTTTGG+AGG - Chr3:100598835-100598854 None:intergenic 40.0%
! ATTTTGTTCATCGGAGGAAC+AGG + Chr3:100597146-100597165 MsG0380017781.01.T01:CDS 40.0%
! CCTTCAAATGCAGATTTTGC+TGG - Chr3:100598691-100598710 None:intergenic 40.0%
! GTGCCTTTTACCCTTTTTTC+TGG + Chr3:100597711-100597730 MsG0380017781.01.T01:intron 40.0%
! TGTGATTGAGCCATCTTTTG+GGG + Chr3:100599421-100599440 MsG0380017781.01.T01:CDS 40.0%
!! AATCTTGCTTTTCTCAGCCA+TGG - Chr3:100597129-100597148 None:intergenic 40.0%
!!! TCCGCAGAGATTTTTTCCTT+CGG + Chr3:100598627-100598646 MsG0380017781.01.T01:intron 40.0%
ACAGAGAGTGATCCTTTAGC+TGG + Chr3:100597403-100597422 MsG0380017781.01.T01:intron 45.0%
ACGTCATTCCCAAATTCCGA+AGG - Chr3:100598646-100598665 None:intergenic 45.0%
ATCGGAGGAACAGGTTACAT+CGG + Chr3:100597155-100597174 MsG0380017781.01.T01:CDS 45.0%
ATGTACAGCGGTGTTCAACA+AGG + Chr3:100599049-100599068 MsG0380017781.01.T01:intron 45.0%
CCTTGTGGGAGAAGAAGATT+GGG + Chr3:100599183-100599202 MsG0380017781.01.T01:CDS 45.0%
GATGTGGTCATATCTACGGT+AGG + Chr3:100597554-100597573 MsG0380017781.01.T01:CDS 45.0%
GGGTATACATATATGGACGG+AGG - Chr3:100597897-100597916 None:intergenic 45.0%
GGTATTATCGATCCACCACT+CGG + Chr3:100599370-100599389 MsG0380017781.01.T01:CDS 45.0%
GTAGAAGCAAGTGCAAAAGC+TGG + Chr3:100597188-100597207 MsG0380017781.01.T01:CDS 45.0%
GTGTCTAGCAACTACTTTGC+TGG + Chr3:100598763-100598782 MsG0380017781.01.T01:CDS 45.0%
TAAGCCTCAACCCCAAAAGA+TGG - Chr3:100599434-100599453 None:intergenic 45.0%
TATGGCGATGGAAATCCCAA+AGG + Chr3:100598856-100598875 MsG0380017781.01.T01:CDS 45.0%
TCACGGACCAATGCAAAAGT+GGG - Chr3:100597218-100597237 None:intergenic 45.0%
TGGACAGTCACAATCATGGT+GGG + Chr3:100598228-100598247 MsG0380017781.01.T01:intron 45.0%
TGTCAAGTACACAACTGTGG+AGG + Chr3:100599469-100599488 MsG0380017781.01.T01:CDS 45.0%
TTAGAGCTGTGGATGATCCA+AGG + Chr3:100599096-100599115 MsG0380017781.01.T01:CDS 45.0%
TTCACGGACCAATGCAAAAG+TGG - Chr3:100597219-100597238 None:intergenic 45.0%
! ATTTTGCTGGATCTACCGCA+TGG - Chr3:100598678-100598697 None:intergenic 45.0%
! TAAGGAGGCTGGTAACGTTA+AGG + Chr3:100597619-100597638 MsG0380017781.01.T01:CDS 45.0%
! TGGATCATCCACAGCTCTAA+TGG - Chr3:100599096-100599115 None:intergenic 45.0%
!! ACGACTTTGTCTTTTGGAGG+AGG - Chr3:100598832-100598851 None:intergenic 45.0%
!! ACTTTGTCTTTTGGAGGAGG+TGG - Chr3:100598829-100598848 None:intergenic 45.0%
!! CTTTGTCTTTTGGAGGAGGT+GGG - Chr3:100598828-100598847 None:intergenic 45.0%
!! TGGACATCCCACTTTTGCAT+TGG + Chr3:100597208-100597227 MsG0380017781.01.T01:CDS 45.0%
!! TGTGACTGTCCACTTTTGTG+TGG - Chr3:100598220-100598239 None:intergenic 45.0%
!! TTTGTCTTTTGGAGGAGGTG+GGG - Chr3:100598827-100598846 None:intergenic 45.0%
!! AATATAATATAATATAATTC+TGG + Chr3:100597667-100597686 MsG0380017781.01.T01:intron 5.0%
!! ATAAATAAATATTTATCATT+TGG - Chr3:100597794-100597813 None:intergenic 5.0%
!!! ATTTAAATATTTTTTATTTG+AGG + Chr3:100598164-100598183 MsG0380017781.01.T01:intron 5.0%
ATCGCTGCAATTAAGGAGGC+TGG + Chr3:100597608-100597627 MsG0380017781.01.T01:CDS 50.0%
CACCTTTCACAAACACCGAG+TGG - Chr3:100599388-100599407 None:intergenic 50.0%
CCCAATCTTCTTCTCCCACA+AGG - Chr3:100599186-100599205 None:intergenic 50.0%
CTTGATCCTCAATCAGAGCG+TGG - Chr3:100597580-100597599 None:intergenic 50.0%
CTTTCACAAACACCGAGTGG+TGG - Chr3:100599385-100599404 None:intergenic 50.0%
GCCTTGTGGGAGAAGAAGAT+TGG + Chr3:100599182-100599201 MsG0380017781.01.T01:CDS 50.0%
GGCTCCTATTCCAATCAACG+TGG + Chr3:100599349-100599368 MsG0380017781.01.T01:CDS 50.0%
GTGGACAGTCACAATCATGG+TGG + Chr3:100598227-100598246 MsG0380017781.01.T01:intron 50.0%
TGACGTTGATCGTGTCCATG+CGG + Chr3:100598660-100598679 MsG0380017781.01.T01:CDS 50.0%
TGTCCTGGCTGAGCTAATGT+GGG - Chr3:100598799-100598818 None:intergenic 50.0%
TTGTCCTGGCTGAGCTAATG+TGG - Chr3:100598800-100598819 None:intergenic 50.0%
! AGTCACAATCATGGTGGGAG+TGG + Chr3:100598233-100598252 MsG0380017781.01.T01:intron 50.0%
! GTCACAATCATGGTGGGAGT+GGG + Chr3:100598234-100598253 MsG0380017781.01.T01:intron 50.0%
! TCAACGAGCTTGTAGCCTTG+TGG + Chr3:100599168-100599187 MsG0380017781.01.T01:CDS 50.0%
!! CAACGAGCTTGTAGCCTTGT+GGG + Chr3:100599169-100599188 MsG0380017781.01.T01:CDS 50.0%
!! CACCACTCGGTGTTTGTGAA+AGG + Chr3:100599383-100599402 MsG0380017781.01.T01:CDS 50.0%
!! TTGAGGAGATTAGCCTTGGC+AGG - Chr3:100597257-100597276 None:intergenic 50.0%
!!! TGAGCCATCTTTTGGGGTTG+AGG + Chr3:100599427-100599446 MsG0380017781.01.T01:CDS 50.0%
GGTAACACGCGTTGCATCCA+TGG + Chr3:100597109-100597128 MsG0380017781.01.T01:exon 55.0%
GTCCTGGCTGAGCTAATGTG+GGG - Chr3:100598798-100598817 None:intergenic 55.0%
! ATCATGGTGGGAGTGGGATC+CGG + Chr3:100598240-100598259 MsG0380017781.01.T01:intron 55.0%
! CGACGTGCTATTGAAGCGGA+AGG + Chr3:100598724-100598743 MsG0380017781.01.T01:CDS 55.0%
! GATCAGCGAGGGTGGATTCA+CGG - Chr3:100597235-100597254 None:intergenic 55.0%
AGCCTTGGCAGGATCAGCGA+GGG - Chr3:100597246-100597265 None:intergenic 60.0%
CTCCCCACATTAGCTCAGCC+AGG + Chr3:100598793-100598812 MsG0380017781.01.T01:CDS 60.0%
GGGAGTGGGATCCGGCAATT+TGG + Chr3:100598248-100598267 MsG0380017781.01.T01:intron 60.0%
GGTAGGCCACGCTCTGATTG+AGG + Chr3:100597571-100597590 MsG0380017781.01.T01:CDS 60.0%
! TAGCCTTGGCAGGATCAGCG+AGG - Chr3:100597247-100597266 None:intergenic 60.0%
CACCCTCGCTGATCCTGCCA+AGG + Chr3:100597241-100597260 MsG0380017781.01.T01:CDS 65.0%
CTTGGCAGGATCAGCGAGGG+TGG - Chr3:100597243-100597262 None:intergenic 65.0%
GGAGGTGGGGCGAATTGTCC+TGG - Chr3:100598814-100598833 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 100597005 100599882 100597005 ID=MsG0380017781.01;Name=MsG0380017781.01
Chr3 mRNA 100597005 100599882 100597005 ID=MsG0380017781.01.T01;Parent=MsG0380017781.01;Name=MsG0380017781.01.T01;_AED=0.35;_eAED=0.35;_QI=123|1|1|1|0.8|0.66|6|346|310
Chr3 exon 100597005 100597310 100597005 ID=MsG0380017781.01.T01:exon:2327;Parent=MsG0380017781.01.T01
Chr3 exon 100597506 100597640 100597506 ID=MsG0380017781.01.T01:exon:2328;Parent=MsG0380017781.01.T01
Chr3 exon 100598634 100598877 100598634 ID=MsG0380017781.01.T01:exon:2329;Parent=MsG0380017781.01.T01
Chr3 exon 100599057 100599260 100599057 ID=MsG0380017781.01.T01:exon:2330;Parent=MsG0380017781.01.T01
Chr3 exon 100599348 100599586 100599348 ID=MsG0380017781.01.T01:exon:2331;Parent=MsG0380017781.01.T01
Chr3 exon 100599609 100599882 100599609 ID=MsG0380017781.01.T01:exon:2332;Parent=MsG0380017781.01.T01
Chr3 five_prime_UTR 100597005 100597127 100597005 ID=MsG0380017781.01.T01:five_prime_utr;Parent=MsG0380017781.01.T01
Chr3 CDS 100597128 100597310 100597128 ID=MsG0380017781.01.T01:cds;Parent=MsG0380017781.01.T01
Chr3 CDS 100597506 100597640 100597506 ID=MsG0380017781.01.T01:cds;Parent=MsG0380017781.01.T01
Chr3 CDS 100598634 100598877 100598634 ID=MsG0380017781.01.T01:cds;Parent=MsG0380017781.01.T01
Chr3 CDS 100599057 100599260 100599057 ID=MsG0380017781.01.T01:cds;Parent=MsG0380017781.01.T01
Chr3 CDS 100599348 100599514 100599348 ID=MsG0380017781.01.T01:cds;Parent=MsG0380017781.01.T01
Chr3 three_prime_UTR 100599515 100599586 100599515 ID=MsG0380017781.01.T01:three_prime_utr;Parent=MsG0380017781.01.T01
Chr3 three_prime_UTR 100599609 100599882 100599609 ID=MsG0380017781.01.T01:three_prime_utr;Parent=MsG0380017781.01.T01
Gene Sequence

>MsG0380017781.01.T01

ATGGCTGAGAAAAGCAAGATTTTGTTCATCGGAGGAACAGGTTACATCGGAAAACATATAGTAGAAGCAAGTGCAAAAGCTGGACATCCCACTTTTGCATTGGTCCGTGAATCCACCCTCGCTGATCCTGCCAAGGCTAATCTCCTCAATAATTTCAAAACTTTAGGCGTCAATTTGGTCCCTGGGGATCTGTATGATCATGAGAACTTGGTGAAAGTAATCAAGCAGGTAGATGTGGTCATATCTACGGTAGGCCACGCTCTGATTGAGGATCAAGTGAAGATTATCGCTGCAATTAAGGAGGCTGGTAACGTTAAGAGATTTTTTCCTTCGGAATTTGGGAATGACGTTGATCGTGTCCATGCGGTAGATCCAGCAAAATCTGCATTTGAAGGGAAAGCCAAAATTCGACGTGCTATTGAAGCGGAAGGCATACCCTACACATATGTGTCTAGCAACTACTTTGCTGGGTATTTTCTCCCCACATTAGCTCAGCCAGGACAATTCGCCCCACCTCCTCCAAAAGACAAAGTCGTCATATATGGCGATGGAAATCCCAAAGCGGTGTTCAACAAGGAAGATGACATTGGAACATTCACCATTAGAGCTGTGGATGATCCAAGGACATTGAATAAGATTCTCTACATAAAGCCCCCAAAGAACATTTATTCATTCAACGAGCTTGTAGCCTTGTGGGAGAAGAAGATTGGGAAGACCGTCGAAAAAACTTTTCTTCCAGAGGATAAACTTCTCAAGGATATTCAAGAGGCTCCTATTCCAATCAACGTGGTATTATCGATCCACCACTCGGTGTTTGTGAAAGGTGATCACACAAACTTTGTGATTGAGCCATCTTTTGGGGTTGAGGCTTATGAGTTGTACCCAGATGTCAAGTACACAACTGTGGAGGAATACCTTGATCAGTTCGTTTGA
Protein sequence

>MsG0380017781.01.T01

MAEKSKILFIGGTGYIGKHIVEASAKAGHPTFALVRESTLADPAKANLLNNFKTLGVNLVPGDLYDHENLVKVIKQVDVVISTVGHALIEDQVKIIAAIKEAGNVKRFFPSEFGNDVDRVHAVDPAKSAFEGKAKIRRAIEAEGIPYTYVSSNYFAGYFLPTLAQPGQFAPPPPKDKVVIYGDGNPKAVFNKEDDIGTFTIRAVDDPRTLNKILYIKPPKNIYSFNELVALWEKKIGKTVEKTFLPEDKLLKDIQEAPIPINVVLSIHHSVFVKGDHTNFVIEPSFGVEAYELYPDVKYTTVEEYLDQFV*