AlfalfaGEDB | MsG0280006711.01

M. sativa cultivar ZhongmuNo.1 / MsG0280006711.01

KEGG: -
GO: -
PFAM: PF05755 PF08590

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280006711.01.T01	XP_003593562.1	93.347	496	21	3	1	495	1	485	0	904

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280006711.01.T01	Q41112	81.034	174	25	2	533	706	1	166	3.19E-91	284

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280006711.01.T01	G7IPR8	93.347	496	21	3	1	495	1	485	0.0	904

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048660.01	MsG0280006711.01	-0.813508	2.470359e-51	1.616359e-48
MsG0080048727.01	MsG0280006711.01	-0.805194	1.501321e-49	7.893179e-47
MsG0080048761.01	MsG0280006711.01	0.826114	3.239353e-54	3.010026e-51
MsG0080048826.01	MsG0280006711.01	-0.809545	1.794751e-50	1.056765e-47
MsG0080048849.01	MsG0280006711.01	-0.804668	1.934509e-49	1.003366e-46
MsG0080048865.01	MsG0280006711.01	-0.814783	1.291895e-51	8.749520e-49
MsG0080048878.01	MsG0280006711.01	-0.800008	1.762800e-48	8.118863e-46
MsG0080049002.01	MsG0280006711.01	-0.824471	7.929609e-54	7.030000e-51
MsG0080049069.01	MsG0280006711.01	-0.807654	4.547165e-50	2.546917e-47
MsG0180000010.01	MsG0280006711.01	0.826658	2.403547e-54	2.268288e-51

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280006711.01.T01	MTR_2g013430	93.347	496	21	3	1	495	1	485	0.0	904
MsG0280006711.01.T01	MTR_2g013430	92.048	503	21	4	1	495	1	492	0.0	897
MsG0280006711.01.T01	MTR_2g013440	99.020	204	2	0	503	706	10	213	2.73e-141	412
MsG0280006711.01.T01	MTR_8g080570	43.434	198	105	2	514	704	13	210	3.56e-45	161
MsG0280006711.01.T01	MTR_4g088915	44.079	152	64	2	533	684	1	131	1.15e-30	117
MsG0280006711.01.T01	MTR_3g085370	39.604	202	107	2	514	704	9	206	2.70e-29	116
MsG0280006711.01.T01	MTR_3g085395	36.628	172	108	1	516	686	11	182	5.26e-26	111
MsG0280006711.01.T01	MTR_3g463770	26.540	422	230	18	101	495	147	515	1.18e-18	90.5
MsG0280006711.01.T01	MTR_1g055235	40.449	89	49	1	620	704	37	125	1.79e-12	65.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280006711.01.T01	AT3G05500	62.100	219	60	3	510	705	13	231	4.21e-85	268
MsG0280006711.01.T01	AT3G15390	35.163	492	274	12	15	487	15	480	7.35e-73	244
MsG0280006711.01.T01	AT2G47780	47.396	192	101	0	513	704	36	227	5.65e-58	196
MsG0280006711.01.T01	AT3G05500	60.140	143	35	2	585	705	17	159	3.24e-47	165
MsG0280006711.01.T01	AT3G15390	37.885	227	128	6	268	487	69	289	6.92e-35	135
MsG0280006711.01.T01	AT1G67360	39.394	198	113	2	514	704	9	206	8.77e-35	132
MsG0280006711.01.T01	AT1G67360	39.394	198	113	2	514	704	9	206	8.77e-35	132
MsG0280006711.01.T01	AT3G15390	37.885	227	128	6	268	487	91	311	1.78e-34	134
MsG0280006711.01.T01	AT5G58720	32.468	154	100	3	337	489	356	506	2.62e-13	73.6

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Find 160 sgRNAs with CRISPR-Local

Find 463 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCACGTTTGCAACAGT+AGG	0.643849	2:-5281108	None:intergenic
AAAATGATACGCGAAGTTCT+TGG	0.465079	2:+5274700	MsG0280006711.01.T01:CDS
AAACAGTACCAGCTGAAACT+GGG	0.600793	2:-5274456	None:intergenic
AAAGCGTGATCAGCTTCAAG+AGG	0.626563	2:+5274624	MsG0280006711.01.T01:CDS
AAAGTGGGTTGAAGGAGAAA+CGG	0.564044	2:+5278253	MsG0280006711.01.T01:CDS
AAAGTTCGCCCAGTTTCAGC+TGG	0.512745	2:+5274448	MsG0280006711.01.T01:CDS
AACAAGAAAAGGTCTACCAG+AGG	0.679113	2:+5278065	MsG0280006711.01.T01:CDS
AACAATACCAGAATACAACC+AGG	0.690617	2:-5278853	None:intergenic
AACCACGTAAAAGAATTGTG+AGG	0.639764	2:+5276543	MsG0280006711.01.T01:CDS
AACCGGAATGTAAACTTGGC+TGG	0.466060	2:+5274283	MsG0280006711.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGATAAACAAGAAGCAG+TGG	-	Chr2:5276352-5276371	None:intergenic	30.0%
AAAATATGGAAGATACTGGA+AGG	+	Chr2:5280181-5280200	MsG0280006711.01.T01:intron	30.0%
AAAGTAAGAAACATCATCAG+TGG	-	Chr2:5275206-5275225	None:intergenic	30.0%
AACACATTGGATTACCATTT+AGG	+	Chr2:5279632-5279651	MsG0280006711.01.T01:intron	30.0%
ACAAATGTCAATAGAAACAC+CGG	-	Chr2:5275857-5275876	None:intergenic	30.0%
ACTACTTTCGTAAGACTATT+TGG	-	Chr2:5273806-5273825	None:intergenic	30.0%
ACTTACATGAAATACCAGAA+AGG	-	Chr2:5277863-5277882	None:intergenic	30.0%
AGAAAAGATGAGGTATATTG+TGG	-	Chr2:5275363-5275382	None:intergenic	30.0%
ATGAGTTGTTGATCCAAAAA+GGG	-	Chr2:5273593-5273612	None:intergenic	30.0%
ATGATCAAGCTAACAAGAAA+AGG	+	Chr2:5278054-5278073	MsG0280006711.01.T01:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	5273122	5281260	5273122	ID=MsG0280006711.01;Name=MsG0280006711.01
Chr2	mRNA	5273122	5281260	5273122	ID=MsG0280006711.01.T01;Parent=MsG0280006711.01;Name=MsG0280006711.01.T01;_AED=0.48;_eAED=0.48;_QI=115\|0.69\|0.64\|1\|0.92\|0.85\|14\|0\|706
Chr2	exon	5273122	5273217	5273122	ID=MsG0280006711.01.T01:exon:2078;Parent=MsG0280006711.01.T01
Chr2	exon	5274144	5274721	5274144	ID=MsG0280006711.01.T01:exon:2079;Parent=MsG0280006711.01.T01
Chr2	exon	5275128	5275180	5275128	ID=MsG0280006711.01.T01:exon:2080;Parent=MsG0280006711.01.T01
Chr2	exon	5275549	5275626	5275549	ID=MsG0280006711.01.T01:exon:2081;Parent=MsG0280006711.01.T01
Chr2	exon	5276227	5276300	5276227	ID=MsG0280006711.01.T01:exon:2082;Parent=MsG0280006711.01.T01
Chr2	exon	5276454	5276677	5276454	ID=MsG0280006711.01.T01:exon:2083;Parent=MsG0280006711.01.T01
Chr2	exon	5277079	5277161	5277079	ID=MsG0280006711.01.T01:exon:2084;Parent=MsG0280006711.01.T01
Chr2	exon	5277297	5277358	5277297	ID=MsG0280006711.01.T01:exon:2085;Parent=MsG0280006711.01.T01
Chr2	exon	5277587	5277655	5277587	ID=MsG0280006711.01.T01:exon:2086;Parent=MsG0280006711.01.T01
Chr2	exon	5277773	5277876	5277773	ID=MsG0280006711.01.T01:exon:2087;Parent=MsG0280006711.01.T01
Chr2	exon	5278021	5278091	5278021	ID=MsG0280006711.01.T01:exon:2088;Parent=MsG0280006711.01.T01
Chr2	exon	5278224	5278318	5278224	ID=MsG0280006711.01.T01:exon:2089;Parent=MsG0280006711.01.T01
Chr2	exon	5278831	5278867	5278831	ID=MsG0280006711.01.T01:exon:2090;Parent=MsG0280006711.01.T01
Chr2	exon	5280649	5281260	5280649	ID=MsG0280006711.01.T01:exon:2091;Parent=MsG0280006711.01.T01
Chr2	five_prime_UTR	5273122	5273217	5273122	ID=MsG0280006711.01.T01:five_prime_utr;Parent=MsG0280006711.01.T01
Chr2	five_prime_UTR	5274144	5274162	5274144	ID=MsG0280006711.01.T01:five_prime_utr;Parent=MsG0280006711.01.T01
Chr2	CDS	5274163	5274721	5274163	ID=MsG0280006711.01.T01:cds;Parent=MsG0280006711.01.T01
Chr2	CDS	5275128	5275180	5275128	ID=MsG0280006711.01.T01:cds;Parent=MsG0280006711.01.T01
Chr2	CDS	5275549	5275626	5275549	ID=MsG0280006711.01.T01:cds;Parent=MsG0280006711.01.T01
Chr2	CDS	5276227	5276300	5276227	ID=MsG0280006711.01.T01:cds;Parent=MsG0280006711.01.T01
Chr2	CDS	5276454	5276677	5276454	ID=MsG0280006711.01.T01:cds;Parent=MsG0280006711.01.T01
Chr2	CDS	5277079	5277161	5277079	ID=MsG0280006711.01.T01:cds;Parent=MsG0280006711.01.T01
Chr2	CDS	5277297	5277358	5277297	ID=MsG0280006711.01.T01:cds;Parent=MsG0280006711.01.T01
Chr2	CDS	5277587	5277655	5277587	ID=MsG0280006711.01.T01:cds;Parent=MsG0280006711.01.T01
Chr2	CDS	5277773	5277876	5277773	ID=MsG0280006711.01.T01:cds;Parent=MsG0280006711.01.T01
Chr2	CDS	5278021	5278091	5278021	ID=MsG0280006711.01.T01:cds;Parent=MsG0280006711.01.T01
Chr2	CDS	5278224	5278318	5278224	ID=MsG0280006711.01.T01:cds;Parent=MsG0280006711.01.T01
Chr2	CDS	5278831	5278867	5278831	ID=MsG0280006711.01.T01:cds;Parent=MsG0280006711.01.T01
Chr2	CDS	5280649	5281260	5280649	ID=MsG0280006711.01.T01:cds;Parent=MsG0280006711.01.T01

Gene Sequence

>MsG0280006711.01.T01

ATGGAAGTCGCTGGCCAGAAAGTGGTTGCATATGATGAAGATCAGGCGTTAAAGTGCTTGTATGATGTCTTTGGAAGTTCGTGTTCACTTGAGGATATAGCTCATGCCTATTGCAAGGCAAACCGGAATGTAAACTTGGCTGGGGAAATTTTGTATGATATGAAGGGGAGCTCCTCAACCTCTGGAAACCATTCATCTAACTCAGATGCCTTTGAAAAGTCTTCAGAATCATCTGATGGACAGTCCTCTGAAAGTTCCCTCCATGGAAGTAAAAACTCAAGGCCCAAAGTTCGCCCAGTTTCAGCTGGTACTGTTTCAAGCGTTATTGGTAAAAGTTATGTTAGATCCGCGCCATCTACAAGTGGGCCTAAAGTGATGACTAAACCGCCTAAGTTGGACGCAAAGGACCTGCCTATGACTGGAATCTACCGTGAAACGGTCGTGTCAAAGCCAGATTCTTCAAAGCGTGATCAGCTTCAAGAGGACATGGAGGAGTTCTTGTTTAAAATGCTTGGAGTTGGTTTTAAGCTTGAAAGGAAAATGATACGCGAAGTTCTTGTTGCCTTATTATACTGTAAACTTGCAGATATGTGCGGGTATGACTTGCAAAAGAGCTTGGATACACTACTAGAGCAATCAGTAATGGATTTGGACAAAAGGCCAGCTGCTGTTTGTGATTCATCTGTTAAGTTTGCAGATGTGAAAACAAAATCTGAAGCACCGGTATCTGAAAAAAAGTCTCAGGATTTAAATTGTATCAGAGGTGATGGAAACATAGTTTCTGTTAAAGAGACACATGACATTCAAAAAGAAGTCTTGTCTAATTTGTTCAGTTATCGTGAATATGTTGAAAAACCACGTAAAAGAATTGTGAGGGATGTGAATAAGAAATCACCATATGGAGTTGGGCATGTGGTATTTGAACCTCCCAAGGATACGGAAGAACACAAGATTGACATGGACTTCAGGCGACGAGAAAATGAAGATGATGCAGAGGATGAAGCAGACTACCAAAGTGCAAGGAAAGCTGTGAAGGAATATCGGGTGACAATGAAGGAATATTATAAAGCAGCTGTTGATGCATTCGCAAACGGAGATCAGGCCAAGGCTGAAAAATTGCTAGACCAGGTAAGGGGCAAATTTTACCTGAACAAGGCACGTGAAGCTGATGACGAATGTAGTAAAATGATTCTTGAAACCAAAGCGGAAGAAACACAAGAAATGGTCCTTGACTTGCGTGATCATGAACCAAAGGTTGCTATTAGACTGCTGAAGACCCATCTTTCTACCCTTTCTGGTATTTCATCATTCGAGTACCTCAAGGTTATCTTTGATGCAAATGATCAAGCTAACAAGAAAAGGTCTACCAGAGGAATGGTATTAAAACTATTAGAGCAGGAGTCTATAAAGTGGGTTGAAGGAGAAACGGCTGGGACAATATTGATCCGCTTAGATAACATTGTTCGTAATCGATGGATGGCTTATGCTCATACACCTGGTTGTATTCTGGTTGATGAGAACAATCGCGATCACACTGAAGAAGAGCAAGAATTGAAGTACCTTGAATTCGTGCAATTCGCAACGATCCAAGCCGTTATGCGATGCGCGATTCTCTATTCCTACGCTAAGGAACGTTCCGGTCCATTGAAACCCGGCGTTGACACCGTCGAAGAAGCCGTTAAAACTGTCGTTGGACCAGTCTACGACAAATTCCACCAAGTCCCCGTCGAGCTTCTCAAATACGTCGATCGCAAAGTCGACGAATCCGTTTCTGAGATCGATCGTCATGTTCCTACTAACGTCAAGAAGGTTTCAAATCAAGCTGCCTCTGTCGTCAGCGAAGTCCGTCGCACCGGTGTTGTTGAATCTGCTTCTGGACTTGCGAAAACTGTTTACTCGAAATATGAACCGAAAGCTGAGCAGTGCGCTGTTTCCGCTTGGAAGAGGTTGAATCAGCTTCCTTTGTTTCCTACTGTTGCAAACGTGGTTTTGCCAAAAGCTGCTTATTGTAGTGAGAAGTATAATGAAGCTGTTGTTTCGAGTGCGGAGAAAGGTTATAGAGTTTCTGCATATCTTCCATTGGTTCCTACTGAGAAGATTGCTAAGGTGTTTGCTGCTTAG

Protein sequence

>MsG0280006711.01.T01

MEVAGQKVVAYDEDQALKCLYDVFGSSCSLEDIAHAYCKANRNVNLAGEILYDMKGSSSTSGNHSSNSDAFEKSSESSDGQSSESSLHGSKNSRPKVRPVSAGTVSSVIGKSYVRSAPSTSGPKVMTKPPKLDAKDLPMTGIYRETVVSKPDSSKRDQLQEDMEEFLFKMLGVGFKLERKMIREVLVALLYCKLADMCGYDLQKSLDTLLEQSVMDLDKRPAAVCDSSVKFADVKTKSEAPVSEKKSQDLNCIRGDGNIVSVKETHDIQKEVLSNLFSYREYVEKPRKRIVRDVNKKSPYGVGHVVFEPPKDTEEHKIDMDFRRRENEDDAEDEADYQSARKAVKEYRVTMKEYYKAAVDAFANGDQAKAEKLLDQVRGKFYLNKAREADDECSKMILETKAEETQEMVLDLRDHEPKVAIRLLKTHLSTLSGISSFEYLKVIFDANDQANKKRSTRGMVLKLLEQESIKWVEGETAGTILIRLDNIVRNRWMAYAHTPGCILVDENNRDHTEEEQELKYLEFVQFATIQAVMRCAILYSYAKERSGPLKPGVDTVEEAVKTVVGPVYDKFHQVPVELLKYVDRKVDESVSEIDRHVPTNVKKVSNQAASVVSEVRRTGVVESASGLAKTVYSKYEPKAEQCAVSAWKRLNQLPLFPTVANVVLPKAAYCSEKYNEAVVSSAEKGYRVSAYLPLVPTEKIAKVFAA*