AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480021260.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021260.01.T01 MTR_4g070360 92.015 263 15 1 1 257 1 263 9.41e-177 489
MsG0480021260.01.T01 MTR_3g111990 49.603 252 119 2 3 248 4 253 4.18e-84 254
MsG0480021260.01.T01 MTR_5g020740 50.198 253 118 2 2 248 4 254 2.79e-81 247
MsG0480021260.01.T01 MTR_3g111980 48.659 261 124 3 2 254 3 261 3.57e-81 246
MsG0480021260.01.T01 MTR_3g116840 48.638 257 124 2 4 254 9 263 1.86e-80 245
MsG0480021260.01.T01 MTR_4g070370 45.703 256 127 4 1 248 5 256 1.30e-71 223
MsG0480021260.01.T01 MTR_5g027240 42.146 261 139 3 1 250 1 260 4.65e-64 203
MsG0480021260.01.T01 MTR_4g070340 41.434 251 139 2 4 248 7 255 5.46e-64 203
MsG0480021260.01.T01 MTR_5g027290 42.146 261 139 3 1 250 1 260 2.04e-63 201
MsG0480021260.01.T01 MTR_5g020760 40.152 264 139 4 3 249 4 265 2.98e-63 199
MsG0480021260.01.T01 MTR_5g020760 39.483 271 145 4 3 256 4 272 4.22e-62 198
MsG0480021260.01.T01 MTR_5g020800 39.483 271 145 4 3 256 4 272 5.36e-62 198
MsG0480021260.01.T01 MTR_8g071130 40.996 261 142 3 1 250 1 260 1.11e-61 197
MsG0480021260.01.T01 MTR_4g070340 40.239 251 137 3 4 248 7 250 5.27e-59 190
MsG0480021260.01.T01 MTR_1g093720 34.921 252 153 4 1 244 11 259 1.19e-46 159
MsG0480021260.01.T01 MTR_4g070340 39.216 204 116 2 51 248 5 206 1.93e-46 157
MsG0480021260.01.T01 MTR_3g008100 35.743 249 149 5 3 245 5 248 1.04e-44 153
MsG0480021260.01.T01 MTR_3g008140 35.178 253 147 6 2 245 4 248 1.60e-44 152
MsG0480021260.01.T01 MTR_3g007970 34.363 259 156 6 2 253 4 255 6.26e-43 149
MsG0480021260.01.T01 MTR_3g008100 34.400 250 146 5 2 245 4 241 1.74e-41 144
MsG0480021260.01.T01 MTR_3g008100 35.329 167 104 3 2 167 4 167 6.35e-26 102
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021260.01.T01 AT4G34540 59.848 264 93 3 2 259 6 262 7.56e-109 317
MsG0480021260.01.T01 AT1G75280 51.341 261 117 3 2 254 4 262 1.24e-86 261
MsG0480021260.01.T01 AT1G75290 49.425 261 122 3 2 254 4 262 5.59e-85 256
MsG0480021260.01.T01 AT1G75290 49.425 261 122 3 2 254 31 289 1.97e-84 256
MsG0480021260.01.T01 AT4G39230 49.402 251 119 2 3 247 4 252 8.14e-84 253
MsG0480021260.01.T01 AT1G75300 44.406 286 131 6 2 264 4 284 2.33e-79 242
MsG0480021260.01.T01 AT1G19540 48.047 256 121 4 4 249 3 256 3.50e-74 227
MsG0480021260.01.T01 AT1G19540 47.843 255 121 4 4 248 3 255 1.60e-72 224
MsG0480021260.01.T01 AT1G32100 38.023 263 151 3 2 253 8 269 1.44e-54 179
MsG0480021260.01.T01 AT4G13660 37.209 258 150 3 2 248 8 264 4.44e-51 170
MsG0480021260.01.T01 AT4G13660 37.209 258 150 3 2 248 8 264 4.44e-51 170

Find 73 sgRNAs with CRISPR-Local

Find 155 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGAAAGGCATTGAAGTTTA+TGG 0.188596 4:+56057741 None:intergenic
GAGATATGGGAAACTAAAAT+AGG 0.244528 4:-56055889 MsG0480021260.01.T01:CDS
TAATACTTGATTCTGCTAAA+TGG 0.246479 4:+56057825 None:intergenic
ACCTGCCAAACATTAATCTA+TGG 0.246485 4:+56057930 None:intergenic
AGGGACAAAGTCACTATATT+TGG 0.279239 4:-56056132 MsG0480021260.01.T01:intron
AGGTTCATCCCATCTGAATT+TGG 0.279876 4:-56056336 MsG0480021260.01.T01:CDS
TTCAAAGAACAAACATTTCC+TGG 0.311587 4:+56055922 None:intergenic
CTCATGCGAATGTACACATT+TGG 0.324909 4:+56058034 None:intergenic
GGAAAGGCATTGAAGTTTAT+GGG 0.335646 4:+56057742 None:intergenic
TTGCAGGAGATGAAAGTATA+TGG 0.349566 4:+56056213 None:intergenic
TCATGCGAATGTACACATTT+GGG 0.360736 4:+56058035 None:intergenic
TTGAAGTTTATGGGATTTGA+TGG 0.363989 4:+56057751 None:intergenic
TGAATGAGCTGGTTGAGATA+TGG 0.375861 4:-56055903 MsG0480021260.01.T01:CDS
TTGATGAACGTTGGATTGAA+TGG 0.410849 4:-56057894 MsG0480021260.01.T01:exon
TACAACAAAAGCTACTCATC+AGG 0.411527 4:-56057522 MsG0480021260.01.T01:CDS
GCAATAGAGTTAAACTCAAT+TGG 0.413384 4:-56058101 MsG0480021260.01.T01:five_prime_UTR
GAATGAGCTGGTTGAGATAT+GGG 0.421530 4:-56055902 MsG0480021260.01.T01:CDS
CTTCCTTCTCTTGTCCAACC+AGG 0.425019 4:-56056171 MsG0480021260.01.T01:CDS
CTTCAATGCCTTTCCCATGC+TGG 0.428488 4:-56057734 MsG0480021260.01.T01:CDS
CAAACAACTTGGTTCTATCA+AGG 0.437457 4:-56057494 MsG0480021260.01.T01:intron
CCATCCCATAGATTAATGTT+TGG 0.446339 4:-56057935 MsG0480021260.01.T01:five_prime_UTR
CCCATAGATTAATGTTTGGC+AGG 0.460309 4:-56057931 MsG0480021260.01.T01:five_prime_UTR
TCATAATGCACTGATTCATA+AGG 0.460885 4:+56055793 None:intergenic
CAGGATTAAAAGCTCCTCCT+AGG 0.463730 4:-56056152 MsG0480021260.01.T01:CDS
AATTGTAGGTGTATTTATGC+AGG 0.470701 4:-56056022 MsG0480021260.01.T01:intron
CTCTAACAAGAGCAAATGTT+GGG 0.483286 4:+56057792 None:intergenic
ATTGGTGCAACGGGAAGTCT+TGG 0.488303 4:-56057851 MsG0480021260.01.T01:CDS
AGATATGGGAAACTAAAATA+GGG 0.489971 4:-56055888 MsG0480021260.01.T01:CDS
TTAATGTTTGGCAGGTAGCT+AGG 0.492990 4:-56057923 MsG0480021260.01.T01:five_prime_UTR
TCTCTAACAAGAGCAAATGT+TGG 0.501646 4:+56057791 None:intergenic
TTGAGTTTAACTCTATTGCC+AGG 0.506199 4:+56058105 None:intergenic
GAGAAAATCATACTTTGAGA+AGG 0.521010 4:+56057705 None:intergenic
CAATTATTTAGACGAAAATG+AGG 0.523263 4:+56058078 None:intergenic
CCAAACATTAATCTATGGGA+TGG 0.525921 4:+56057935 None:intergenic
AATCCTGGTTGGACAAGAGA+AGG 0.534523 4:+56056168 None:intergenic
CAAAACTTTATTCAACGTGC+GGG 0.536330 4:+56055957 None:intergenic
CCTGCCAAACATTAATCTAT+GGG 0.537918 4:+56057931 None:intergenic
AATTGAAATTAGGCAACTTG+TGG 0.541470 4:-56056250 MsG0480021260.01.T01:CDS
GTTACATCATTACATTACAT+AGG 0.541535 4:-56057988 MsG0480021260.01.T01:five_prime_UTR
AAGTTCACATACTTTAGCCT+TGG 0.542851 4:+56056302 None:intergenic
ATCAGGGTTATCAAACAACT+TGG 0.542961 4:-56057505 MsG0480021260.01.T01:CDS
TGAAGTTTATGGGATTTGAT+GGG 0.544984 4:+56057752 None:intergenic
TGTTTGTTCTTTGAATGAGC+TGG 0.551475 4:-56055914 MsG0480021260.01.T01:CDS
GGATCTGAGCCAAATTCAGA+TGG 0.556972 4:+56056327 None:intergenic
TGCACTGATTCATAAGGTAG+TGG 0.560123 4:+56055799 None:intergenic
CATATTACGATGAATTGTCC+TGG 0.560781 4:-56058123 MsG0480021260.01.T01:five_prime_UTR
GGCTAAAGTATGTGAACTTG+AGG 0.561289 4:-56056298 MsG0480021260.01.T01:CDS
GGGTAACTCCAGCATGGGAA+AGG 0.565218 4:+56057726 None:intergenic
TCACATACTTTAGCCTTGGT+AGG 0.568317 4:+56056306 None:intergenic
AGGATTAAAAGCTCCTCCTA+GGG 0.569921 4:-56056151 MsG0480021260.01.T01:CDS
TATGTAATGTAATGATGTAA+CGG 0.573101 4:+56057990 None:intergenic
GAGCTGCTTGAGAAAATCAA+AGG 0.590625 4:-56055832 MsG0480021260.01.T01:CDS
CAAACATTAATCTATGGGAT+GGG 0.593363 4:+56057936 None:intergenic
AAAGTATGTGAACTTGAGGA+TGG 0.599062 4:-56056294 MsG0480021260.01.T01:CDS
GAGAAGGGTAACTCCAGCAT+GGG 0.599164 4:+56057721 None:intergenic
GTGTACATTCGCATGAGAGA+AGG 0.600246 4:-56058028 MsG0480021260.01.T01:five_prime_UTR
AGAAAATCATACTTTGAGAA+GGG 0.600453 4:+56057706 None:intergenic
AGGCAACTTGTGGAAGCTGA+AGG 0.602341 4:-56056240 MsG0480021260.01.T01:CDS
TGAGAAGGGTAACTCCAGCA+TGG 0.605275 4:+56057720 None:intergenic
ACAAAACTTTATTCAACGTG+CGG 0.614674 4:+56055956 None:intergenic
AATATAGTGACTTTGTCCCT+AGG 0.615843 4:+56056135 None:intergenic
ACAACAAAAGCTACTCATCA+GGG 0.618980 4:-56057521 MsG0480021260.01.T01:CDS
CATGCGAATGTACACATTTG+GGG 0.624583 4:+56058036 None:intergenic
AGATGAAGCAAGCCTTGTTG+AGG 0.626473 4:-56057596 MsG0480021260.01.T01:CDS
AGGTTGTTGTTGATGAACGT+TGG 0.630790 4:-56057903 MsG0480021260.01.T01:five_prime_UTR
CTAACTTCACAGCCTCAACA+AGG 0.643328 4:+56057584 None:intergenic
ATAGTGACTTTGTCCCTAGG+AGG 0.649958 4:+56056138 None:intergenic
GATCTGAGCCAAATTCAGAT+GGG 0.661245 4:+56056328 None:intergenic
AAATAGGGAAGAAACTTGAG+AGG 0.666892 4:-56055873 MsG0480021260.01.T01:CDS
AAAACTTTATTCAACGTGCG+GGG 0.672201 4:+56055958 None:intergenic
TGCTGCTTTCACTATCAATG+CGG 0.675047 4:-56055989 MsG0480021260.01.T01:CDS
AAAGAACAAACATTTCCTGG+AGG 0.691831 4:+56055925 None:intergenic
ATTTGGCTCAGATCCTACCA+AGG 0.716779 4:-56056319 MsG0480021260.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAATTTATAGAAATATAAT+AGG + Chr4:56057355-56057374 None:intergenic 10.0%
!!! TTATCATATTTTTATAGTTT+AGG + Chr4:56057162-56057181 None:intergenic 10.0%
!! ACTAGAATATTAAGTAATTT+AGG - Chr4:56057293-56057312 MsG0480021260.01.T01:intron 15.0%
!! CTAGAATATTAAGTAATTTA+GGG - Chr4:56057294-56057313 MsG0480021260.01.T01:intron 15.0%
!! TATAGTATATACTATCAATT+TGG + Chr4:56057395-56057414 None:intergenic 15.0%
!!! AAAAGCAAGATTTTAATAAT+TGG - Chr4:56056036-56056055 MsG0480021260.01.T01:intron 15.0%
!!! CTTTTGTTTATAATAAATTG+AGG - Chr4:56057428-56057447 MsG0480021260.01.T01:intron 15.0%
!! AATAAAAAATTCAGCTCAAA+AGG - Chr4:56056808-56056827 MsG0480021260.01.T01:intron 20.0%
!! ATAAAAAATTCAGCTCAAAA+GGG - Chr4:56056809-56056828 MsG0480021260.01.T01:intron 20.0%
!! CTATAAAAATATGATAAGTC+AGG - Chr4:56057165-56057184 MsG0480021260.01.T01:intron 20.0%
!! TATGTAATGTAATGATGTAA+CGG + Chr4:56055918-56055937 None:intergenic 20.0%
!!! ATTCTAGTTCTTATCTTTAA+AGG + Chr4:56057281-56057300 None:intergenic 20.0%
!!! ATTTGTTTGTTAACATTTGT+TGG - Chr4:56057540-56057559 MsG0480021260.01.T01:CDS 20.0%
!!! TCCAAATTTTTACTTTAGTT+CGG - Chr4:56056621-56056640 MsG0480021260.01.T01:intron 20.0%
! AAAATAACAAGTATCAGCTA+TGG + Chr4:56056593-56056612 None:intergenic 25.0%
! AGATATGGGAAACTAAAATA+GGG - Chr4:56058017-56058036 MsG0480021260.01.T01:five_prime_UTR 25.0%
! ATATATGCGATATATCCTAA+TGG + Chr4:56057084-56057103 None:intergenic 25.0%
! ATGAACTCTTCAAATTCTTA+TGG - Chr4:56056456-56056475 MsG0480021260.01.T01:intron 25.0%
! ATGCACCAAAAATTGAAATT+AGG - Chr4:56057645-56057664 MsG0480021260.01.T01:intron 25.0%
! CAATTATTTAGACGAAAATG+AGG + Chr4:56055830-56055849 None:intergenic 25.0%
! GGATTATTAAATGTTCATGT+AGG + Chr4:56057469-56057488 None:intergenic 25.0%
! GTCATTGAAAAATATAAGCA+TGG + Chr4:56056735-56056754 None:intergenic 25.0%
! GTTACATCATTACATTACAT+AGG - Chr4:56055917-56055936 MsG0480021260.01.T01:CDS 25.0%
! TAATACTTGATTCTGCTAAA+TGG + Chr4:56056083-56056102 None:intergenic 25.0%
! TAATTTAGGGACTAAGTTTA+TGG - Chr4:56057307-56057326 MsG0480021260.01.T01:intron 25.0%
! TCTATAAATTGAAGAGTGAT+AGG - Chr4:56057363-56057382 MsG0480021260.01.T01:intron 25.0%
!! AATTTTCATGAAGAAATTGC+AGG + Chr4:56057711-56057730 None:intergenic 25.0%
!! AGAAAATCATACTTTGAGAA+GGG + Chr4:56056202-56056221 None:intergenic 25.0%
!! AGTTGCCTAATTTCAATTTT+TGG + Chr4:56057653-56057672 None:intergenic 25.0%
!! CTTATCTTTAAAGGAATTGA+TGG + Chr4:56057272-56057291 None:intergenic 25.0%
!! TATGGACTGAAAATAGTTTA+GGG - Chr4:56057325-56057344 MsG0480021260.01.T01:intron 25.0%
!! TGTGATTTGTGTATTCAAAT+AGG + Chr4:56057490-56057509 None:intergenic 25.0%
!! TTATGGACTGAAAATAGTTT+AGG - Chr4:56057324-56057343 MsG0480021260.01.T01:intron 25.0%
!!! ATATACTTTTTCAGCTAACA+AGG + Chr4:56056520-56056539 None:intergenic 25.0%
!!! ATTTTAATAATTGGTGCAAC+GGG - Chr4:56056045-56056064 MsG0480021260.01.T01:intron 25.0%
!!! CCAAATTTTTACTTTAGTTC+GGG - Chr4:56056622-56056641 MsG0480021260.01.T01:intron 25.0%
!!! GATTTTAATAATTGGTGCAA+CGG - Chr4:56056044-56056063 MsG0480021260.01.T01:intron 25.0%
!!! GCTGATACTTGTTATTTTTT+AGG - Chr4:56056595-56056614 MsG0480021260.01.T01:intron 25.0%
!!! TGGTTGATATTTTATGTACA+GGG - Chr4:56056277-56056296 MsG0480021260.01.T01:CDS 25.0%
AAACCATTACCACTTGTTTA+AGG - Chr4:56056982-56057001 MsG0480021260.01.T01:intron 30.0%
AATCATGAATAAGTAAGCTC+TGG + Chr4:56057856-56057875 None:intergenic 30.0%
AATTGAAATTAGGCAACTTG+TGG - Chr4:56057655-56057674 MsG0480021260.01.T01:intron 30.0%
AATTGTAGGTGTATTTATGC+AGG - Chr4:56057883-56057902 MsG0480021260.01.T01:exon 30.0%
ACAAAACTTTATTCAACGTG+CGG + Chr4:56057952-56057971 None:intergenic 30.0%
AGAGAAAGAACGATAGTTTA+AGG + Chr4:56057130-56057149 None:intergenic 30.0%
AGAGCTTACTTATTCATGAT+TGG - Chr4:56057855-56057874 MsG0480021260.01.T01:CDS 30.0%
CAAACATTAATCTATGGGAT+GGG + Chr4:56055972-56055991 None:intergenic 30.0%
CCCGAACTAAAGTAAAAATT+TGG + Chr4:56056625-56056644 None:intergenic 30.0%
CTATACGAATGCTATATTGT+TGG + Chr4:56056759-56056778 None:intergenic 30.0%
GAAGATTAATCACTACCAAA+CGG + Chr4:56056885-56056904 None:intergenic 30.0%
GAGATATGGGAAACTAAAAT+AGG - Chr4:56058016-56058035 MsG0480021260.01.T01:five_prime_UTR 30.0%
GCAATAGAGTTAAACTCAAT+TGG - Chr4:56055804-56055823 MsG0480021260.01.T01:CDS 30.0%
TATGATAAGTCAGGACTAAT+CGG - Chr4:56057174-56057193 MsG0480021260.01.T01:intron 30.0%
TGAAGTTTATGGGATTTGAT+GGG + Chr4:56056156-56056175 None:intergenic 30.0%
TTCAAAGAACAAACATTTCC+TGG + Chr4:56057986-56058005 None:intergenic 30.0%
TTGAAGTTTATGGGATTTGA+TGG + Chr4:56056157-56056176 None:intergenic 30.0%
! AAAGTCACTATATTTGGTGA+CGG - Chr4:56057779-56057798 MsG0480021260.01.T01:CDS 30.0%
! GAGAAAATCATACTTTGAGA+AGG + Chr4:56056203-56056222 None:intergenic 30.0%
! TAATGGACAACATATTCTAG+CGG + Chr4:56056546-56056565 None:intergenic 30.0%
! TATAAACAAAAGCACACATG+TGG + Chr4:56057420-56057439 None:intergenic 30.0%
!! AAGCTCTGGAAAAATGAAAA+TGG + Chr4:56057842-56057861 None:intergenic 30.0%
!! GTGGTTGATATTTTATGTAC+AGG - Chr4:56056276-56056295 MsG0480021260.01.T01:CDS 30.0%
!! TCATAATGCACTGATTCATA+AGG + Chr4:56058115-56058134 None:intergenic 30.0%
!!! CATGATTGGTTTTCAATTGT+AGG - Chr4:56057869-56057888 MsG0480021260.01.T01:CDS 30.0%
AAAACTTTATTCAACGTGCG+GGG + Chr4:56057950-56057969 None:intergenic 35.0%
AAAGAACAAACATTTCCTGG+AGG + Chr4:56057983-56058002 None:intergenic 35.0%
AAAGTATGTGAACTTGAGGA+TGG - Chr4:56057611-56057630 MsG0480021260.01.T01:intron 35.0%
AAATAGGGAAGAAACTTGAG+AGG - Chr4:56058032-56058051 MsG0480021260.01.T01:five_prime_UTR 35.0%
AAATTGAAGAGTGATAGGCA+GGG - Chr4:56057368-56057387 MsG0480021260.01.T01:intron 35.0%
AAGTTCACATACTTTAGCCT+TGG + Chr4:56057606-56057625 None:intergenic 35.0%
AATATAGTGACTTTGTCCCT+AGG + Chr4:56057773-56057792 None:intergenic 35.0%
ACAACAAAAGCTACTCATCA+GGG - Chr4:56056384-56056403 MsG0480021260.01.T01:intron 35.0%
ACCTGCCAAACATTAATCTA+TGG + Chr4:56055978-56055997 None:intergenic 35.0%
AGACCTTAAACAAGTGGTAA+TGG + Chr4:56056988-56057007 None:intergenic 35.0%
AGGGACAAAGTCACTATATT+TGG - Chr4:56057773-56057792 MsG0480021260.01.T01:CDS 35.0%
ATCAGGGTTATCAAACAACT+TGG - Chr4:56056400-56056419 MsG0480021260.01.T01:intron 35.0%
ATGCGATATATCCTAATGGA+AGG + Chr4:56057080-56057099 None:intergenic 35.0%
ATGTGTACCCAATAAGTACT+CGG + Chr4:56056910-56056929 None:intergenic 35.0%
CAAAACTTTATTCAACGTGC+GGG + Chr4:56057951-56057970 None:intergenic 35.0%
CCAAACATTAATCTATGGGA+TGG + Chr4:56055973-56055992 None:intergenic 35.0%
CCATCCCATAGATTAATGTT+TGG - Chr4:56055970-56055989 MsG0480021260.01.T01:CDS 35.0%
CCTGCCAAACATTAATCTAT+GGG + Chr4:56055977-56055996 None:intergenic 35.0%
CTCTAACAAGAGCAAATGTT+GGG + Chr4:56056116-56056135 None:intergenic 35.0%
GAAAAGAGACCTTAAACAAG+TGG + Chr4:56056994-56057013 None:intergenic 35.0%
GCTAGAATATGTTGTCCATT+AGG - Chr4:56056545-56056564 MsG0480021260.01.T01:intron 35.0%
GGAGAAAACTTTGTTGAGAT+TGG + Chr4:56056943-56056962 None:intergenic 35.0%
TAAATTGAAGAGTGATAGGC+AGG - Chr4:56057367-56057386 MsG0480021260.01.T01:intron 35.0%
TAATCACTACCAAACGGTAT+CGG + Chr4:56056879-56056898 None:intergenic 35.0%
TACAACAAAAGCTACTCATC+AGG - Chr4:56056383-56056402 MsG0480021260.01.T01:intron 35.0%
TCATGCGAATGTACACATTT+GGG + Chr4:56055873-56055892 None:intergenic 35.0%
TCTCTAACAAGAGCAAATGT+TGG + Chr4:56056117-56056136 None:intergenic 35.0%
TGCGATATATCCTAATGGAA+GGG + Chr4:56057079-56057098 None:intergenic 35.0%
TGTTTGTTCTTTGAATGAGC+TGG - Chr4:56057991-56058010 MsG0480021260.01.T01:five_prime_UTR 35.0%
TTGAGTTTAACTCTATTGCC+AGG + Chr4:56055803-56055822 None:intergenic 35.0%
TTGATGAACGTTGGATTGAA+TGG - Chr4:56056011-56056030 MsG0480021260.01.T01:CDS 35.0%
! CTTACATTTTCCCTTCCATT+AGG - Chr4:56057066-56057085 MsG0480021260.01.T01:intron 35.0%
! TGAGTCTTATCTGATTCTTG+TGG - Chr4:56056257-56056276 MsG0480021260.01.T01:CDS 35.0%
! TTAACATTTGTTGGCTACAG+AGG - Chr4:56057549-56057568 MsG0480021260.01.T01:CDS 35.0%
! TTCATGTAGGTTGAGTTTCA+AGG + Chr4:56057456-56057475 None:intergenic 35.0%
! TTGCAGGAGATGAAAGTATA+TGG + Chr4:56057695-56057714 None:intergenic 35.0%
!! CAAACAACTTGGTTCTATCA+AGG - Chr4:56056411-56056430 MsG0480021260.01.T01:intron 35.0%
!! GGAAAGGCATTGAAGTTTAT+GGG + Chr4:56056166-56056185 None:intergenic 35.0%
AGGATTAAAAGCTCCTCCTA+GGG - Chr4:56057754-56057773 MsG0480021260.01.T01:CDS 40.0%
AGGTTCATCCCATCTGAATT+TGG - Chr4:56057569-56057588 MsG0480021260.01.T01:CDS 40.0%
ATCTTCCACCGAGTACTTAT+TGG - Chr4:56056899-56056918 MsG0480021260.01.T01:intron 40.0%
CATGCGAATGTACACATTTG+GGG + Chr4:56055872-56055891 None:intergenic 40.0%
CCCATAGATTAATGTTTGGC+AGG - Chr4:56055974-56055993 MsG0480021260.01.T01:CDS 40.0%
CTATGGCCTTCAAGAGATAA+AGG + Chr4:56056576-56056595 None:intergenic 40.0%
CTCATGCGAATGTACACATT+TGG + Chr4:56055874-56055893 None:intergenic 40.0%
GAATGAGCTGGTTGAGATAT+GGG - Chr4:56058003-56058022 MsG0480021260.01.T01:five_prime_UTR 40.0%
GAGATAAAGGATCAGCCTAA+TGG + Chr4:56056563-56056582 None:intergenic 40.0%
GAGCTGCTTGAGAAAATCAA+AGG - Chr4:56058073-56058092 MsG0480021260.01.T01:five_prime_UTR 40.0%
GATCTGAGCCAAATTCAGAT+GGG + Chr4:56057580-56057599 None:intergenic 40.0%
GCTGATCCTTTATCTCTTGA+AGG - Chr4:56056567-56056586 MsG0480021260.01.T01:intron 40.0%
GGCTAAAGTATGTGAACTTG+AGG - Chr4:56057607-56057626 MsG0480021260.01.T01:CDS 40.0%
TCTTCCACCGAGTACTTATT+GGG - Chr4:56056900-56056919 MsG0480021260.01.T01:intron 40.0%
TGAATGAGCTGGTTGAGATA+TGG - Chr4:56058002-56058021 MsG0480021260.01.T01:five_prime_UTR 40.0%
TTAATGTTTGGCAGGTAGCT+AGG - Chr4:56055982-56056001 MsG0480021260.01.T01:CDS 40.0%
! AGGTTGTTGTTGATGAACGT+TGG - Chr4:56056002-56056021 MsG0480021260.01.T01:CDS 40.0%
! ATGAAGTATCCGATACCGTT+TGG - Chr4:56056867-56056886 MsG0480021260.01.T01:intron 40.0%
!! GGGAAAGGCATTGAAGTTTA+TGG + Chr4:56056167-56056186 None:intergenic 40.0%
!! TCACATACTTTAGCCTTGGT+AGG + Chr4:56057602-56057621 None:intergenic 40.0%
!! TGCACTGATTCATAAGGTAG+TGG + Chr4:56058109-56058128 None:intergenic 40.0%
!! TGCTGCTTTCACTATCAATG+CGG - Chr4:56057916-56057935 MsG0480021260.01.T01:five_prime_UTR 40.0%
!! TTTGGTGACGGCAATACAAA+AGG - Chr4:56057791-56057810 MsG0480021260.01.T01:CDS 40.0%
AATCCTGGTTGGACAAGAGA+AGG + Chr4:56057740-56057759 None:intergenic 45.0%
ATAGTGACTTTGTCCCTAGG+AGG + Chr4:56057770-56057789 None:intergenic 45.0%
CAGGATTAAAAGCTCCTCCT+AGG - Chr4:56057753-56057772 MsG0480021260.01.T01:CDS 45.0%
CTAACTTCACAGCCTCAACA+AGG + Chr4:56056324-56056343 None:intergenic 45.0%
GGATCTGAGCCAAATTCAGA+TGG + Chr4:56057581-56057600 None:intergenic 45.0%
GTGTACATTCGCATGAGAGA+AGG - Chr4:56055877-56055896 MsG0480021260.01.T01:CDS 45.0%
TAACCTAACCAGCATGTGGT+TGG + Chr4:56057024-56057043 None:intergenic 45.0%
TGCATAACCTAACCAGCATG+TGG + Chr4:56057028-56057047 None:intergenic 45.0%
TGTACCCAATAAGTACTCGG+TGG + Chr4:56056907-56056926 None:intergenic 45.0%
! ATTTGGCTCAGATCCTACCA+AGG - Chr4:56057586-56057605 MsG0480021260.01.T01:CDS 45.0%
! CTAGGAGGAGCTTTTAATCC+TGG + Chr4:56057755-56057774 None:intergenic 45.0%
! GAGGAGCTTTTAATCCTGGT+TGG + Chr4:56057751-56057770 None:intergenic 45.0%
! GTTTTGTACTTGAGACCTCC+AGG - Chr4:56057965-56057984 MsG0480021260.01.T01:five_prime_UTR 45.0%
!! AGATGAAGCAAGCCTTGTTG+AGG - Chr4:56056309-56056328 MsG0480021260.01.T01:CDS 45.0%
!! AGTGGTAATGGTTTGATCCC+CGG + Chr4:56056976-56056995 None:intergenic 45.0%
!! ATATATTGTTATAAATATTA+TGG - Chr4:56056842-56056861 MsG0480021260.01.T01:intron 5.0%
!! ATATTTATAACAATATATAA+AGG + Chr4:56056840-56056859 None:intergenic 5.0%
AGGCAACTTGTGGAAGCTGA+AGG - Chr4:56057665-56057684 MsG0480021260.01.T01:intron 50.0%
ATTGGTGCAACGGGAAGTCT+TGG - Chr4:56056054-56056073 MsG0480021260.01.T01:intron 50.0%
CACTTGAACCAACCACATGC+TGG - Chr4:56057013-56057032 MsG0480021260.01.T01:intron 50.0%
CTTCAATGCCTTTCCCATGC+TGG - Chr4:56056171-56056190 MsG0480021260.01.T01:CDS 50.0%
CTTCCTTCTCTTGTCCAACC+AGG - Chr4:56057734-56057753 MsG0480021260.01.T01:CDS 50.0%
GAGAAGGGTAACTCCAGCAT+GGG + Chr4:56056187-56056206 None:intergenic 50.0%
TGAGAAGGGTAACTCCAGCA+TGG + Chr4:56056188-56056207 None:intergenic 50.0%
! GAACCAACCACATGCTGGTT+AGG - Chr4:56057018-56057037 MsG0480021260.01.T01:intron 50.0%
! GTTTTCTCCATCGAGAGAGC+CGG - Chr4:56056954-56056973 MsG0480021260.01.T01:intron 50.0%
! TTTTCTCCATCGAGAGAGCC+GGG - Chr4:56056955-56056974 MsG0480021260.01.T01:intron 50.0%
GGGTAACTCCAGCATGGGAA+AGG + Chr4:56056182-56056201 None:intergenic 55.0%
TTTCTCCATCGAGAGAGCCG+GGG - Chr4:56056956-56056975 MsG0480021260.01.T01:intron 55.0%
TTGATCCCCGGCTCTCTCGA+TGG + Chr4:56056964-56056983 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 56055783 56058144 56055783 ID=MsG0480021260.01;Name=MsG0480021260.01
Chr4 mRNA 56055783 56058144 56055783 ID=MsG0480021260.01.T01;Parent=MsG0480021260.01;Name=MsG0480021260.01.T01;_AED=0.50;_eAED=0.50;_QI=247|0.66|0.5|1|1|1|4|0|264
Chr4 exon 56055783 56056036 56055783 ID=MsG0480021260.01.T01:exon:6353;Parent=MsG0480021260.01.T01
Chr4 exon 56056133 56056358 56056133 ID=MsG0480021260.01.T01:exon:6352;Parent=MsG0480021260.01.T01
Chr4 exon 56057495 56057629 56057495 ID=MsG0480021260.01.T01:exon:6351;Parent=MsG0480021260.01.T01
Chr4 exon 56057718 56058144 56057718 ID=MsG0480021260.01.T01:exon:6350;Parent=MsG0480021260.01.T01
Chr4 five_prime_UTR 56057898 56058144 56057898 ID=MsG0480021260.01.T01:five_prime_utr;Parent=MsG0480021260.01.T01
Chr4 CDS 56057718 56057897 56057718 ID=MsG0480021260.01.T01:cds;Parent=MsG0480021260.01.T01
Chr4 CDS 56057495 56057629 56057495 ID=MsG0480021260.01.T01:cds;Parent=MsG0480021260.01.T01
Chr4 CDS 56056133 56056358 56056133 ID=MsG0480021260.01.T01:cds;Parent=MsG0480021260.01.T01
Chr4 CDS 56055783 56056036 56055783 ID=MsG0480021260.01.T01:cds;Parent=MsG0480021260.01.T01
Gene Sequence

>MsG0480021260.01.T01

ATGGAAAAAAGCAAGATTTTAATAATTGGTGCAACGGGAAGTCTTGGTTACCATTTAGCAGAATCAAGTATTAAATTTTGTCACCCAACATTTGCTCTTGTTAGAGATTCTTCTTTTTCTGATCCCATCAAATCCCATAAACTTCAATGCCTTTCCCATGCTGGAGTTACCCTTCTCAAAGGTTCTCTAGAAGATGAAGCAAGCCTTGTTGAGGCTGTGAAGTTAGTAGATGTTGTAATTTGTGCTGTTTCAGCTAAACAAACTCTACAACAAAAGCTACTCATCAGGGTTATCAAACAACTTGGTTCTATCAAGAGGTTCATCCCATCTGAATTTGGCTCAGATCCTACCAAGGCTAAAGTATGTGAACTTGAGGATGGCTATAATTTCTATGCACCAAAAATTGAAATTAGGCAACTTGTGGAAGCTGAAGGCATTCCATATACTTTCATCTCCTGCAATTTCTTCATGAAAATTTTGCTTCCTTCTCTTGTCCAACCAGGATTAAAAGCTCCTCCTAGGGACAAAGTCACTATATTTGGTGTATTTATGCAGGAAAGTGATGTTGCTGCTTTCACTATCAATGCGGTTGATGATCCCCGCACGTTGAATAAAGTTTTGTACTTGAGACCTCCAGGAAATGTTTGTTCTTTGAATGAGCTGGTTGAGATATGGGAAACTAAAATAGGGAAGAAACTTGAGAGGTTGCATGTCTCAGAAGAAGAGCTGCTTGAGAAAATCAAAGGTATTATAATACCACTACCTTATGAATCAGTGCATTATGAAACATATTGA

Protein sequence

>MsG0480021260.01.T01

MEKSKILIIGATGSLGYHLAESSIKFCHPTFALVRDSSFSDPIKSHKLQCLSHAGVTLLKGSLEDEASLVEAVKLVDVVICAVSAKQTLQQKLLIRVIKQLGSIKRFIPSEFGSDPTKAKVCELEDGYNFYAPKIEIRQLVEAEGIPYTFISCNFFMKILLPSLVQPGLKAPPRDKVTIFGVFMQESDVAAFTINAVDDPRTLNKVLYLRPPGNVCSLNELVEIWETKIGKKLERLHVSEEELLEKIKGIIIPLPYESVHYETY*