AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080049013.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080049013.01.T01 MTR_2g105850 98.883 179 2 0 91 269 68 246 2.57e-131 372
MsG0080049013.01.T01 MTR_2g105850 72.067 179 1 1 91 269 68 197 4.21e-83 248
MsG0080049013.01.T01 MTR_4g113520 32.669 251 101 6 85 268 62 311 1.45e-35 129
MsG0080049013.01.T01 MTR_3g087920 45.205 146 75 2 81 223 35 178 3.70e-31 118
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080049013.01.T01 AT1G50440 68.571 245 65 3 29 269 14 250 1.74e-115 332
MsG0080049013.01.T01 AT1G50440 68.571 245 65 3 29 269 14 250 1.74e-115 332
MsG0080049013.01.T01 AT1G50440 68.571 245 65 3 29 269 14 250 1.74e-115 332
MsG0080049013.01.T01 AT1G50440 67.907 215 58 2 29 239 14 221 1.61e-99 290
MsG0080049013.01.T01 AT1G50440 57.353 204 74 3 29 228 14 208 8.87e-73 223
MsG0080049013.01.T01 AT1G11020 36.653 251 92 5 85 268 70 320 4.69e-41 144
MsG0080049013.01.T01 AT2G22120 47.107 121 61 1 81 198 34 154 2.72e-30 115
MsG0080049013.01.T01 AT2G22120 47.107 121 61 1 81 198 34 154 4.48e-30 116

Find 11 sgRNAs with CRISPR-Local

Find 268 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCTAACATGGCTAGATTAA+AGG 0.243249 contig608end:+13720 MsG0080049013.01.T01:intergenic
AGTTTAGCTATAAGTGAATT+TGG 0.243976 contig608end:+13670 MsG0080049013.01.T01:intergenic
AATTTCTTTGAGTCTACATT+AGG 0.300585 contig608end:-13619 MsG0080049013.01.T01:exon
ATTTCTTTGAGTCTACATTA+GGG 0.340005 contig608end:-13618 MsG0080049013.01.T01:exon
TCCTTTAATCTAGCCATGTT+AGG 0.383380 contig608end:-13721 MsG0080049013.01.T01:exon
CCATGTTAGGCAAGTAGGAT+TGG 0.447287 contig608end:-13708 MsG0080049013.01.T01:exon
TCTAGCCATGTTAGGCAAGT+AGG 0.473668 contig608end:-13713 MsG0080049013.01.T01:exon
CCAATCCTACTTGCCTAACA+TGG 0.534884 contig608end:+13708 MsG0080049013.01.T01:intergenic
TTTGAGTCTACATTAGGGGA+AGG 0.557506 contig608end:-13613 MsG0080049013.01.T01:exon
TTTCTTTGAGTCTACATTAG+GGG 0.636194 contig608end:-13617 MsG0080049013.01.T01:exon
GACTCAAAGAAATTACATCG+AGG 0.745396 contig608end:+13628 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGATAATTAAAGATATTAA+CGG - contig608end:11795-11814 MsG0080049013.01.T01:intron 10.0%
!! TCTTCTTATAATTAAATTAT+CGG + contig608end:11248-11267 MsG0080049013.01.T01:intergenic 10.0%
!!! ACCTTAAATTTTTATAAAAA+AGG + contig608end:13464-13483 MsG0080049013.01.T01:intergenic 10.0%
!!! TCCTTTTTTATAAAAATTTA+AGG - contig608end:13460-13479 MsG0080049013.01.T01:CDS 10.0%
!! ATAAGAAGATTTAACAAATA+GGG - contig608end:11259-11278 MsG0080049013.01.T01:intron 15.0%
!! ATTTGGAAAAATAAAAATCA+TGG - contig608end:10419-10438 MsG0080049013.01.T01:intron 15.0%
!! CTTCTTATAATTAAATTATC+GGG + contig608end:11247-11266 MsG0080049013.01.T01:intergenic 15.0%
!! TAAAAAATTGATTGCAATAA+TGG + contig608end:10335-10354 MsG0080049013.01.T01:intergenic 15.0%
!! TATAAGAAGATTTAACAAAT+AGG - contig608end:11258-11277 MsG0080049013.01.T01:intron 15.0%
!! TATACATTAGTTAAAAAGTA+TGG + contig608end:11690-11709 MsG0080049013.01.T01:intergenic 15.0%
!! TCTATTATTAGATTGAAAAT+TGG - contig608end:11943-11962 MsG0080049013.01.T01:intron 15.0%
!! TTTGGAAAAATAAAAATCAT+GGG - contig608end:10420-10439 MsG0080049013.01.T01:intron 15.0%
!!! AATTTTCAATCTAATAATAG+AGG + contig608end:11944-11963 MsG0080049013.01.T01:intergenic 15.0%
!!! ATCAATTAATTTTTACTGTT+TGG - contig608end:11436-11455 MsG0080049013.01.T01:intron 15.0%
!!! ATTGGATATATATTTTGAAA+CGG + contig608end:11631-11650 MsG0080049013.01.T01:intergenic 15.0%
!!! ATTTTCAATCTAATAATAGA+GGG + contig608end:11943-11962 MsG0080049013.01.T01:intergenic 15.0%
!!! CAACATAGATATTAATTTTA+AGG - contig608end:10767-10786 MsG0080049013.01.T01:intron 15.0%
!! AAACTTAAACAAGAAAGAAT+GGG + contig608end:13635-13654 MsG0080049013.01.T01:intergenic 20.0%
!! AACAAAGAAACAATAAACTT+TGG - contig608end:10853-10872 MsG0080049013.01.T01:CDS 20.0%
!! AAGGATCATAATATGTAATT+TGG - contig608end:10502-10521 MsG0080049013.01.T01:intron 20.0%
!! AATGAAATACATAAAATCGT+AGG + contig608end:12775-12794 MsG0080049013.01.T01:intergenic 20.0%
!! ATGAAATACATAAAATCGTA+GGG + contig608end:12774-12793 MsG0080049013.01.T01:intergenic 20.0%
!! CAAACAAAATTATTCTCAAT+TGG + contig608end:11997-12016 MsG0080049013.01.T01:intergenic 20.0%
!! CATATATGACTAAAAGATAA+AGG - contig608end:10591-10610 MsG0080049013.01.T01:CDS 20.0%
!! GTGCTTATTTATAAATTCTA+TGG - contig608end:12858-12877 MsG0080049013.01.T01:intron 20.0%
!! TAAACAATACAATACAAGAA+CGG + contig608end:13402-13421 MsG0080049013.01.T01:intergenic 20.0%
!! TAAGAAGATTTAACAAATAG+GGG - contig608end:11260-11279 MsG0080049013.01.T01:intron 20.0%
!! TCTAATTTAACATCTAAAAG+TGG + contig608end:13666-13685 MsG0080049013.01.T01:intergenic 20.0%
!! TCTTTATAGCAATAATATGT+TGG - contig608end:13127-13146 MsG0080049013.01.T01:intron 20.0%
!! TTCAAAATTTATCCTAAAAG+CGG - contig608end:10149-10168 MsG0080049013.01.T01:CDS 20.0%
!! TTCTTGTATTGTATTGTTTA+AGG - contig608end:13402-13421 MsG0080049013.01.T01:intron 20.0%
!!! AATCTATCTATTTCTTGTTT+GGG - contig608end:12202-12221 MsG0080049013.01.T01:intron 20.0%
!!! ATATATCCAATTTTTGCAAT+GGG - contig608end:11640-11659 MsG0080049013.01.T01:intron 20.0%
!!! ATGATTTAGTCTAATTTTTG+AGG - contig608end:11125-11144 MsG0080049013.01.T01:CDS 20.0%
!!! CTAATTTTTGAGGTATATAT+TGG - contig608end:11135-11154 MsG0080049013.01.T01:CDS 20.0%
!!! GAATAATTTTGTTTGTCTAT+CGG - contig608end:12002-12021 MsG0080049013.01.T01:intron 20.0%
!!! TAATCTATCTATTTCTTGTT+TGG - contig608end:12201-12220 MsG0080049013.01.T01:intron 20.0%
!!! TATATATCCAATTTTTGCAA+TGG - contig608end:11639-11658 MsG0080049013.01.T01:intron 20.0%
!!! TATTAATTTTAAGGTGTTGT+AGG - contig608end:10776-10795 MsG0080049013.01.T01:intron 20.0%
!!! TTTTTCCAAACAAACTAATA+GGG - contig608end:11043-11062 MsG0080049013.01.T01:CDS 20.0%
! AAACAATACAATACAAGAAC+GGG + contig608end:13401-13420 MsG0080049013.01.T01:intergenic 25.0%
! AAATAGGAATAATTTCACAG+AGG + contig608end:12400-12419 MsG0080049013.01.T01:intergenic 25.0%
! AAGAAGATTTAACAAATAGG+GGG - contig608end:11261-11280 MsG0080049013.01.T01:intron 25.0%
! AATTTCTTTGAGTCTACATT+AGG - contig608end:10111-10130 MsG0080049013.01.T01:exon 25.0%
! AGAATGAATGAATGAATCTA+GGG + contig608end:12056-12075 MsG0080049013.01.T01:intergenic 25.0%
! AGTTTAGCTATAAGTGAATT+TGG + contig608end:10063-10082 MsG0080049013.01.T01:intergenic 25.0%
! ATTTCTTTGAGTCTACATTA+GGG - contig608end:10112-10131 MsG0080049013.01.T01:exon 25.0%
! GAAACTTAAACAAGAAAGAA+TGG + contig608end:13636-13655 MsG0080049013.01.T01:intergenic 25.0%
! TAGATTGAAAATTGGTAAGT+GGG - contig608end:11951-11970 MsG0080049013.01.T01:intron 25.0%
! TATCATATTGTATGCTTCAT+GGG - contig608end:10291-10310 MsG0080049013.01.T01:intron 25.0%
! TCAAAATTTATCCTAAAAGC+GGG - contig608end:10150-10169 MsG0080049013.01.T01:CDS 25.0%
! TCCAAACATTTAAGTAACTT+GGG + contig608end:10689-10708 MsG0080049013.01.T01:intergenic 25.0%
! TGAAATACATAAAATCGTAG+GGG + contig608end:12773-12792 MsG0080049013.01.T01:intergenic 25.0%
! TGATTGAAGATCGTTTAATT+TGG - contig608end:10402-10421 MsG0080049013.01.T01:intron 25.0%
! TGTAAACTATCTCAAACTAT+GGG + contig608end:11548-11567 MsG0080049013.01.T01:intergenic 25.0%
! TTAGATTGAAAATTGGTAAG+TGG - contig608end:11950-11969 MsG0080049013.01.T01:intron 25.0%
! TTGTAAACTATCTCAAACTA+TGG + contig608end:11549-11568 MsG0080049013.01.T01:intergenic 25.0%
!! AATTGATTCTGAGTCATATA+AGG - contig608end:13430-13449 MsG0080049013.01.T01:intron 25.0%
!! AGAAACAATAAACTTTGGAA+TGG - contig608end:10858-10877 MsG0080049013.01.T01:CDS 25.0%
!! ATACTCTTAGATTAGCTAAA+GGG + contig608end:10274-10293 MsG0080049013.01.T01:intergenic 25.0%
!! ATCTATCTATTTCTTGTTTG+GGG - contig608end:12203-12222 MsG0080049013.01.T01:intron 25.0%
!! ATTCTTTTCTTTTCTTTTGC+AGG - contig608end:12257-12276 MsG0080049013.01.T01:intron 25.0%
!! CTTTTTCCAAACAAACTAAT+AGG - contig608end:11042-11061 MsG0080049013.01.T01:CDS 25.0%
!! TAGAAACATTCTAAAGAGAA+AGG - contig608end:13682-13701 MsG0080049013.01.T01:exon 25.0%
!! TTCTTTCTTGTTTAAGTTTC+CGG - contig608end:13636-13655 MsG0080049013.01.T01:exon 25.0%
!! TTTTACTTGGTTTACTACAT+AGG + contig608end:10901-10920 MsG0080049013.01.T01:intergenic 25.0%
!!! AAACAATAAACTTTGGAATG+GGG - contig608end:10860-10879 MsG0080049013.01.T01:CDS 25.0%
!!! ACTATAATTTTGAGTTTGTG+AGG - contig608end:11492-11511 MsG0080049013.01.T01:intron 25.0%
!!! GAAACAATAAACTTTGGAAT+GGG - contig608end:10859-10878 MsG0080049013.01.T01:CDS 25.0%
!!! GATACATGTTTTTTTTTGTG+TGG - contig608end:11092-11111 MsG0080049013.01.T01:CDS 25.0%
!!! GATATATATTTTGAAACGGA+TGG + contig608end:11627-11646 MsG0080049013.01.T01:intergenic 25.0%
!!! GATTTGATTTGATTGATTTC+AGG + contig608end:12079-12098 MsG0080049013.01.T01:intergenic 25.0%
AAAAGCTGCAAACAAACATT+GGG + contig608end:12980-12999 MsG0080049012.01.T01:intergenic 30.0%
AAAATAAATTCGTCCTCACA+TGG - contig608end:11205-11224 MsG0080049013.01.T01:CDS 30.0%
AACCAACTTATTACATGCAA+TGG - contig608end:13039-13058 MsG0080049013.01.T01:intron 30.0%
AATTATTCTCAATTGGACGA+CGG + contig608end:11990-12009 MsG0080049013.01.T01:intergenic 30.0%
AGTTTCTAATCTAAACCATC+AGG - contig608end:10737-10756 MsG0080049013.01.T01:intron 30.0%
ATACATATACCAGCTAGTAA+AGG + contig608end:13610-13629 MsG0080049013.01.T01:intergenic 30.0%
ATATGTAATTTGGAAGCTCA+AGG - contig608end:10512-10531 MsG0080049013.01.T01:intron 30.0%
ATCTAGCTGTAATTCCAAAT+TGG + contig608end:10210-10229 MsG0080049013.01.T01:intergenic 30.0%
ATGCAAGAGTTACTTGATAA+AGG - contig608end:10476-10495 MsG0080049013.01.T01:intron 30.0%
ATTTCGGGAAATGTATAAGT+TGG + contig608end:12311-12330 MsG0080049013.01.T01:intergenic 30.0%
ATTTGAGAGTGGTGAATAAA+TGG + contig608end:12952-12971 MsG0080049013.01.T01:intergenic 30.0%
GAGAATGAATGAATGAATCT+AGG + contig608end:12057-12076 MsG0080049013.01.T01:intergenic 30.0%
GATGAACTTAGAGAAATGTT+TGG - contig608end:12882-12901 MsG0080049013.01.T01:intron 30.0%
GGGAAGTTAAAAAATTCATG+TGG - contig608end:10541-10560 MsG0080049013.01.T01:intron 30.0%
GGTCATAAGATATGCAATTT+CGG - contig608end:13356-13375 MsG0080049013.01.T01:intron 30.0%
GTATCATATTGTATGCTTCA+TGG - contig608end:10290-10309 MsG0080049013.01.T01:intron 30.0%
GTCATAAGATATGCAATTTC+GGG - contig608end:13357-13376 MsG0080049013.01.T01:intron 30.0%
GTCCAAACATTTAAGTAACT+TGG + contig608end:10690-10709 MsG0080049013.01.T01:intergenic 30.0%
GTTTCTAATCTAAACCATCA+GGG - contig608end:10738-10757 MsG0080049013.01.T01:intron 30.0%
TAAAAACCATGCTCTATGAA+TGG - contig608end:10916-10935 MsG0080049013.01.T01:intron 30.0%
TCAATCTAATAATAGAGGGA+CGG + contig608end:11939-11958 MsG0080049013.01.T01:intergenic 30.0%
TTCCATTGCATGTAATAAGT+TGG + contig608end:13044-13063 MsG0080049013.01.T01:intergenic 30.0%
TTTCTAATCTAAACCATCAG+GGG - contig608end:10739-10758 MsG0080049013.01.T01:intron 30.0%
TTTCTTTGAGTCTACATTAG+GGG - contig608end:10113-10132 MsG0080049013.01.T01:exon 30.0%
TTTGAGAGTGGTGAATAAAT+GGG + contig608end:12951-12970 MsG0080049013.01.T01:intergenic 30.0%
! GATACTCTTAGATTAGCTAA+AGG + contig608end:10275-10294 MsG0080049013.01.T01:intergenic 30.0%
! GTTTGAAGCTAATTGCATTT+CGG + contig608end:12327-12346 MsG0080049013.01.T01:intergenic 30.0%
! TCTATCTATTTCTTGTTTGG+GGG - contig608end:12204-12223 MsG0080049013.01.T01:intron 30.0%
! TGATGTATCTCTTATTTCTC+AGG - contig608end:10235-10254 MsG0080049013.01.T01:intron 30.0%
! TTTCTGAAGAAGAAGAATCT+TGG + contig608end:12358-12377 MsG0080049013.01.T01:intergenic 30.0%
! TTTGAAGCTAATTGCATTTC+GGG + contig608end:12326-12345 MsG0080049013.01.T01:intergenic 30.0%
! TTTTCCTTTTCTAATTGCAC+AGG - contig608end:12818-12837 MsG0080049013.01.T01:intron 30.0%
!! TAACATGCTTCACTTTTATG+TGG + contig608end:13262-13281 MsG0080049013.01.T01:intergenic 30.0%
!! TACATCCCTATTAGTTTGTT+TGG + contig608end:11051-11070 MsG0080049013.01.T01:intergenic 30.0%
!! TGATTGGACATGTATTTTGA+CGG - contig608end:11836-11855 MsG0080049013.01.T01:intron 30.0%
!! TTGGGCATTGAAAAAATAAG+TGG + contig608end:10671-10690 MsG0080049013.01.T01:intergenic 30.0%
!!! ATGAATTTTTTAACTTCCCG+AGG + contig608end:10540-10559 MsG0080049013.01.T01:intergenic 30.0%
AAACGATCTTCAATCACAGT+TGG + contig608end:10398-10417 MsG0080049013.01.T01:intergenic 35.0%
AACATCTAAAAGTGGAAGAC+CGG + contig608end:13658-13677 MsG0080049013.01.T01:intergenic 35.0%
AACGATCTTCAATCACAGTT+GGG + contig608end:10397-10416 MsG0080049013.01.T01:intergenic 35.0%
ACAACCTGTGCAATTAGAAA+AGG + contig608end:12825-12844 MsG0080049013.01.T01:intergenic 35.0%
ACGAAAAAGTCAGAAATGAG+TGG + contig608end:13003-13022 MsG0080049013.01.T01:intergenic 35.0%
ACTAATAGGGATGTAACAGA+AGG - contig608end:11056-11075 MsG0080049013.01.T01:CDS 35.0%
AGAAGAAGAATCTTGGTTGT+CGG + contig608end:12351-12370 MsG0080049013.01.T01:intergenic 35.0%
AGAAGATCGAGAACATGTAA+AGG - contig608end:13535-13554 MsG0080049013.01.T01:intron 35.0%
AGATTGAAACAATCCATGTG+AGG + contig608end:11221-11240 MsG0080049013.01.T01:intergenic 35.0%
ATACATAAAATCGTAGGGGA+TGG + contig608end:12769-12788 MsG0080049013.01.T01:intergenic 35.0%
ATAGTGCCCATTGCAAAAAT+TGG + contig608end:11649-11668 MsG0080049013.01.T01:intergenic 35.0%
ATGTAACAGAAGGATGCATA+AGG - contig608end:11066-11085 MsG0080049013.01.T01:CDS 35.0%
CACTTGAATCTTTCTGTAGT+TGG + contig608end:11008-11027 MsG0080049013.01.T01:intergenic 35.0%
GAAAAGCTGCAAACAAACAT+TGG + contig608end:12981-13000 MsG0080049013.01.T01:intergenic 35.0%
GAAAATGAATGCATGATCTC+TGG + contig608end:12717-12736 MsG0080049013.01.T01:intergenic 35.0%
GACCTTTGTCAATTCTTGTT+TGG + contig608end:13187-13206 MsG0080049013.01.T01:intergenic 35.0%
GACTCAAAGAAATTACATCG+AGG + contig608end:10105-10124 MsG0080049013.01.T01:intergenic 35.0%
GCCCAAGTTACTTAAATGTT+TGG - contig608end:10685-10704 MsG0080049013.01.T01:intron 35.0%
GGTTATGAAGAACATCCATA+CGG - contig608end:12903-12922 MsG0080049013.01.T01:intron 35.0%
TATATCATGATTGTCAGACG+TGG + contig608end:12426-12445 MsG0080049013.01.T01:intergenic 35.0%
TCAAACTATGGGTCAATCTA+TGG + contig608end:11537-11556 MsG0080049013.01.T01:intergenic 35.0%
TCACAGAGGTGATTCAATAT+GGG + contig608end:12386-12405 MsG0080049013.01.T01:intergenic 35.0%
TCACATTACTTGCTTGCTTT+GGG + contig608end:10974-10993 MsG0080049013.01.T01:intergenic 35.0%
TCCTTTAATCTAGCCATGTT+AGG - contig608end:10009-10028 MsG0080049013.01.T01:exon 35.0%
TGCCAAACAAGAATTGACAA+AGG - contig608end:13182-13201 MsG0080049013.01.T01:intron 35.0%
TGTAACAGAAGGATGCATAA+GGG - contig608end:11067-11086 MsG0080049013.01.T01:CDS 35.0%
TTCACAGAGGTGATTCAATA+TGG + contig608end:12387-12406 MsG0080049013.01.T01:intergenic 35.0%
TTCACATTACTTGCTTGCTT+TGG + contig608end:10975-10994 MsG0080049013.01.T01:intergenic 35.0%
TTGTATGCTTCATGGGAAAA+AGG - contig608end:10298-10317 MsG0080049013.01.T01:intron 35.0%
! AGTTACTTGATAAAGGTGCA+AGG - contig608end:10483-10502 MsG0080049013.01.T01:intron 35.0%
! ATGATCTGTGGACATACTTT+TGG + contig608end:12559-12578 MsG0080049013.01.T01:intergenic 35.0%
! ATGATGATGAGAGAAGAAAG+AGG + contig608end:12105-12124 MsG0080049013.01.T01:intergenic 35.0%
! ATTCTTGTTTGGCAAGAACA+TGG + contig608end:13176-13195 MsG0080049013.01.T01:intergenic 35.0%
! CATAGAGCATGGTTTTTACT+TGG + contig608end:10914-10933 MsG0080049013.01.T01:intergenic 35.0%
! GGTTTTGCCTATATTTTCGT+TGG + contig608end:13712-13731 MsG0080049013.01.T01:intergenic 35.0%
! TATTTCTTGTTTGGGGGTTA+GGG - contig608end:12210-12229 MsG0080049013.01.T01:intron 35.0%
! TCCATACGGATTTTACACAA+TGG - contig608end:12917-12936 MsG0080049013.01.T01:intron 35.0%
! TGATCTGTGGACATACTTTT+GGG + contig608end:12558-12577 MsG0080049013.01.T01:intergenic 35.0%
! TGTATCTCTTATTTCTCAGG+TGG - contig608end:10238-10257 MsG0080049013.01.T01:intron 35.0%
!! TGCTTCACTTTTATGTGGAT+TGG + contig608end:13257-13276 MsG0080049013.01.T01:intergenic 35.0%
!!! CTGTTTACTTTTTTGACGTC+AGG - contig608end:13502-13521 MsG0080049013.01.T01:CDS 35.0%
AACTAGCCATTCATAGAGCA+TGG + contig608end:10925-10944 MsG0080049013.01.T01:intergenic 40.0%
ACAGATCATGTCTCGATAAC+TGG - contig608end:12570-12589 MsG0080049013.01.T01:intron 40.0%
ACATGTGTGAAGTGGTTGAT+TGG - contig608end:11820-11839 MsG0080049013.01.T01:intron 40.0%
AGAGGTGATTCAATATGGGT+TGG + contig608end:12382-12401 MsG0080049013.01.T01:intergenic 40.0%
AGCAAGCAAGTAATGTGAAG+TGG - contig608end:10976-10995 MsG0080049013.01.T01:intron 40.0%
AGGCAGACCAACGAAAATAT+AGG - contig608end:13702-13721 MsG0080049013.01.T01:exon 40.0%
AGTTATCGAGACATGATCTG+TGG + contig608end:12571-12590 MsG0080049013.01.T01:intergenic 40.0%
AGTTTGTGAGGAGACAACAA+AGG - contig608end:11504-11523 MsG0080049013.01.T01:intron 40.0%
ATGGAAGATGCGACTTTGTT+TGG - contig608end:10807-10826 MsG0080049013.01.T01:intron 40.0%
ATGGTGTGGACATTCCAATT+TGG - contig608end:10193-10212 MsG0080049013.01.T01:CDS 40.0%
ATTGGGCATGAATTTGAGAG+TGG + contig608end:12963-12982 MsG0080049013.01.T01:intergenic 40.0%
CAAATGTCCCTAAAGATCGA+TGG - contig608end:12660-12679 MsG0080049013.01.T01:intron 40.0%
CTTGCTGCAAAACACATCTT+TGG - contig608end:13335-13354 MsG0080049013.01.T01:intron 40.0%
GAGCAAACCCACCAAAATAA+TGG + contig608end:13100-13119 MsG0080049013.01.T01:intergenic 40.0%
GAGGTGATTCAATATGGGTT+GGG + contig608end:12381-12400 MsG0080049013.01.T01:intergenic 40.0%
GCCATTGTGTAAAATCCGTA+TGG + contig608end:12921-12940 MsG0080049013.01.T01:intergenic 40.0%
GCCTAACATGGCTAGATTAA+AGG + contig608end:10013-10032 MsG0080049013.01.T01:intergenic 40.0%
GGGAATTACTTGATCTGAAG+TGG - contig608end:10440-10459 MsG0080049013.01.T01:intron 40.0%
GTGACAGAACTAAGGATGTT+GGG - contig608end:13584-13603 MsG0080049013.01.T01:intron 40.0%
GTTTGTGAGGAGACAACAAA+GGG - contig608end:11505-11524 MsG0080049013.01.T01:intron 40.0%
TCAACCACCATCGATCTTTA+GGG + contig608end:12670-12689 MsG0080049013.01.T01:intergenic 40.0%
TCTTCTCTCATCATCATCCA+GGG - contig608end:12108-12127 MsG0080049013.01.T01:intron 40.0%
TGCATAGCAGCATCATATGA+TGG - contig608end:12172-12191 MsG0080049013.01.T01:intron 40.0%
TGCTTCATGGGAAAAAGGAA+TGG - contig608end:10303-10322 MsG0080049013.01.T01:intron 40.0%
TGTGACAGAACTAAGGATGT+TGG - contig608end:13583-13602 MsG0080049013.01.T01:intron 40.0%
TTATCCTAAAAGCGGGAAGT+AGG - contig608end:10157-10176 MsG0080049013.01.T01:CDS 40.0%
TTCTTCTCTCATCATCATCC+AGG - contig608end:12107-12126 MsG0080049013.01.T01:intron 40.0%
TTTGAGTCTACATTAGGGGA+AGG - contig608end:10117-10136 MsG0080049013.01.T01:exon 40.0%
TTTGTGAGGAGACAACAAAG+GGG - contig608end:11506-11525 MsG0080049013.01.T01:intron 40.0%
! ATTTCTTGTTTGGGGGTTAG+GGG - contig608end:12211-12230 MsG0080049013.01.T01:intron 40.0%
! CATCGATCTTTAGGGACATT+TGG + contig608end:12662-12681 MsG0080049013.01.T01:intergenic 40.0%
! CTATTTCTTGTTTGGGGGTT+AGG - contig608end:12209-12228 MsG0080049013.01.T01:intron 40.0%
! TACGGATTTTACACAATGGC+TGG - contig608end:12921-12940 MsG0080049013.01.T01:intron 40.0%
! TCTCTTATTTCTCAGGTGGT+TGG - contig608end:10242-10261 MsG0080049013.01.T01:intron 40.0%
! TGCAGTTCTCGCCATTATTT+TGG - contig608end:13086-13105 MsG0080049013.01.T01:intron 40.0%
!! ACATCCTTAGTTCTGTCACA+TGG + contig608end:13583-13602 MsG0080049013.01.T01:intergenic 40.0%
!! ACTTTTGGGTACCTTTGCAA+TGG + contig608end:12544-12563 MsG0080049013.01.T01:intergenic 40.0%
!! ATTACTTGCTTGCTTTGGGA+GGG + contig608end:10970-10989 MsG0080049013.01.T01:intergenic 40.0%
!! CAATAAACTTTGGAATGGGG+TGG - contig608end:10863-10882 MsG0080049013.01.T01:CDS 40.0%
!! GGTGTTGTAGGTGTTGTTAA+TGG - contig608end:10788-10807 MsG0080049013.01.T01:intron 40.0%
!! TTTTTGACGTCAGGAGTATG+TGG - contig608end:13511-13530 MsG0080049013.01.T01:intron 40.0%
!!! AGTTCTCGCCATTATTTTGG+TGG - contig608end:13089-13108 MsG0080049013.01.T01:intron 40.0%
!!! ATTTTGGTGGGTTTGCTCTA+TGG - contig608end:13102-13121 MsG0080049013.01.T01:intron 40.0%
!!! GTTCTCGCCATTATTTTGGT+GGG - contig608end:13090-13109 MsG0080049013.01.T01:intron 40.0%
!!! TGGACATGTATTTTGACGGA+GGG - contig608end:11840-11859 MsG0080049013.01.T01:intron 40.0%
!!! TTGGACATGTATTTTGACGG+AGG - contig608end:11839-11858 MsG0080049013.01.T01:intron 40.0%
AGAAAAAGCAAAGCCCTCCT+TGG + contig608end:12603-12622 MsG0080049013.01.T01:intergenic 45.0%
AGTCTTCTCCTCCAAGATCA+AGG + contig608end:12508-12527 MsG0080049013.01.T01:intergenic 45.0%
ATGTCCCTAAAGATCGATGG+TGG - contig608end:12663-12682 MsG0080049013.01.T01:intron 45.0%
ATTCTCAATTGGACGACGGA+CGG + contig608end:11986-12005 MsG0080049013.01.T01:intergenic 45.0%
CCAATCCTACTTGCCTAACA+TGG + contig608end:10025-10044 MsG0080049013.01.T01:intergenic 45.0%
CCATGTTAGGCAAGTAGGAT+TGG - contig608end:10022-10041 MsG0080049013.01.T01:exon 45.0%
CTATGTTGTTCATCCCCTGA+TGG + contig608end:10755-10774 MsG0080049013.01.T01:intergenic 45.0%
CTCAACCACCATCGATCTTT+AGG + contig608end:12671-12690 MsG0080049013.01.T01:intergenic 45.0%
CTCCAAGATCAAGGCATATC+CGG + contig608end:12499-12518 MsG0080049013.01.T01:intergenic 45.0%
CTTGCTGCAAAACACGTCTT+TGG - contig608end:13300-13319 MsG0080049013.01.T01:intron 45.0%
GATCATGTCTCGATAACTGG+AGG - contig608end:12573-12592 MsG0080049013.01.T01:intron 45.0%
GTTTGGCAAGAACATGGTAG+TGG + contig608end:13170-13189 MsG0080049013.01.T01:intergenic 45.0%
TAACGGTGACATGTGTGAAG+TGG - contig608end:11812-11831 MsG0080049013.01.T01:intron 45.0%
TCTAGCCATGTTAGGCAAGT+AGG - contig608end:10017-10036 MsG0080049013.01.T01:exon 45.0%
TGTTTGTCCTAGTTACCCGA+GGG - contig608end:11880-11899 MsG0080049013.01.T01:intron 45.0%
TTGTCAGACGTGGCAGAAAT+AGG + contig608end:12416-12435 MsG0080049013.01.T01:intergenic 45.0%
TTTGGAAGCTCAAGGTTCCT+CGG - contig608end:10520-10539 MsG0080049013.01.T01:intron 45.0%
! CATTACTTGCTTGCTTTGGG+AGG + contig608end:10971-10990 MsG0080049013.01.T01:intergenic 45.0%
! CTTTGTTTGGTTGCGTGCTT+TGG - contig608end:10820-10839 MsG0080049013.01.T01:CDS 45.0%
! TTTCTTGTTTGGGGGTTAGG+GGG - contig608end:12212-12231 MsG0080049013.01.T01:intron 45.0%
!! CTTAGTTCTGTCACATGGCT+GGG + contig608end:13578-13597 MsG0080049013.01.T01:intergenic 45.0%
!! GCACAGGTTGTTGCTTTCTT+GGG - contig608end:12834-12853 MsG0080049013.01.T01:intron 45.0%
!! GTTGCGTGCTTTGGAGTATT+TGG - contig608end:10829-10848 MsG0080049013.01.T01:CDS 45.0%
!! TGCACAGGTTGTTGCTTTCT+TGG - contig608end:12833-12852 MsG0080049013.01.T01:intron 45.0%
!! TTAGTTCTGTCACATGGCTG+GGG + contig608end:13577-13596 MsG0080049013.01.T01:intergenic 45.0%
!!! AAATAAAAATAAATTGTTTT+TGG - contig608end:11378-11397 MsG0080049013.01.T01:intron 5.0%
AACTGGAGGTCTACCAAGGA+GGG - contig608end:12587-12606 MsG0080049013.01.T01:intron 50.0%
AATAGAGGGACGGACGTTGT+TGG + contig608end:11929-11948 MsG0080049013.01.T01:intergenic 50.0%
AGTAGGTGGAGGATAGGTGA+TGG - contig608end:10174-10193 MsG0080049013.01.T01:CDS 50.0%
ATGCTGATCACCCACAATGC+CGG - contig608end:12477-12496 MsG0080049013.01.T01:intron 50.0%
CAAGGCATATCCGGCATTGT+GGG + contig608end:12490-12509 MsG0080049013.01.T01:intergenic 50.0%
CCAGCCATGTGACAGAACTA+AGG - contig608end:13576-13595 MsG0080049013.01.T01:intron 50.0%
CGATAACTGGAGGTCTACCA+AGG - contig608end:12583-12602 MsG0080049013.01.T01:intron 50.0%
CGGATATGCCTTGATCTTGG+AGG - contig608end:12497-12516 MsG0080049013.01.T01:intron 50.0%
GATGTTGGGCCTTTACTAGC+TGG - contig608end:13598-13617 MsG0080049013.01.T01:intron 50.0%
GTGTTTGTCCTAGTTACCCG+AGG - contig608end:11879-11898 MsG0080049013.01.T01:intron 50.0%
GTTTGTCCTAGTTACCCGAG+GGG - contig608end:11881-11900 MsG0080049013.01.T01:intron 50.0%
TAAAAGCGGGAAGTAGGTGG+AGG - contig608end:10163-10182 MsG0080049013.01.T01:CDS 50.0%
TAACTGGAGGTCTACCAAGG+AGG - contig608end:12586-12605 MsG0080049013.01.T01:intron 50.0%
TCAAGGCATATCCGGCATTG+TGG + contig608end:12491-12510 MsG0080049013.01.T01:intergenic 50.0%
TCCTAAAAGCGGGAAGTAGG+TGG - contig608end:10160-10179 MsG0080049013.01.T01:CDS 50.0%
TCTCATCATCATCCAGGGCA+GGG - contig608end:12113-12132 MsG0080049013.01.T01:intron 50.0%
TGCCGGATATGCCTTGATCT+TGG - contig608end:12494-12513 MsG0080049013.01.T01:intron 50.0%
TGGGTACCTTTGCAATGGCA+GGG + contig608end:12539-12558 MsG0080049013.01.T01:intergenic 50.0%
TTGGAAGCTCAAGGTTCCTC+GGG - contig608end:10521-10540 MsG0080049013.01.T01:intron 50.0%
TTGGGTACCTTTGCAATGGC+AGG + contig608end:12540-12559 MsG0080049013.01.T01:intergenic 50.0%
TTTGTCCTAGTTACCCGAGG+GGG - contig608end:11882-11901 MsG0080049013.01.T01:intron 50.0%
! TTCTTGTTTGGGGGTTAGGG+GGG - contig608end:12213-12232 MsG0080049013.01.T01:intron 50.0%
!! CCTTAGTTCTGTCACATGGC+TGG + contig608end:13579-13598 MsG0080049013.01.T01:intergenic 50.0%
!! TCCACCTACTTCCCGCTTTT+AGG + contig608end:10164-10183 MsG0080049013.01.T01:intergenic 50.0%
ATTGCCCCCTGCCATTGCAA+AGG - contig608end:12530-12549 MsG0080049013.01.T01:intron 55.0%
CGTTCGTTCGTAGACGAGAG+CGG + contig608end:12031-12050 MsG0080049013.01.T01:intergenic 55.0%
CTCTCATCATCATCCAGGGC+AGG - contig608end:12112-12131 MsG0080049013.01.T01:intron 55.0%
GGGTACCTTTGCAATGGCAG+GGG + contig608end:12538-12557 MsG0080049013.01.T01:intergenic 55.0%
GGTACCTTTGCAATGGCAGG+GGG + contig608end:12537-12556 MsG0080049013.01.T01:intergenic 55.0%
TCAATTGGACGACGGACGGA+CGG + contig608end:11982-12001 MsG0080049013.01.T01:intergenic 55.0%
! GTGGAGGATAGGTGATGGTG+TGG - contig608end:10179-10198 MsG0080049013.01.T01:CDS 55.0%
ACATGGCTGGGGTCGAGTTC+AGG + contig608end:13566-13585 MsG0080049013.01.T01:intergenic 60.0%
ACCACACATCACTCCCCCTC+GGG + contig608end:11898-11917 MsG0080049013.01.T01:intergenic 60.0%
ATCATCATCCAGGGCAGGGC+AGG - contig608end:12117-12136 MsG0080049013.01.T01:intron 60.0%
CACCACACATCACTCCCCCT+CGG + contig608end:11899-11918 MsG0080049013.01.T01:intergenic 60.0%
GCGGGAAGTAGGTGGAGGAT+AGG - contig608end:10168-10187 MsG0080049013.01.T01:CDS 60.0%
GTTTGGGGGTTAGGGGGGTT+TGG - contig608end:12218-12237 MsG0080049013.01.T01:intron 60.0%
TCACTCCCCCTCGGGTAACT+AGG + contig608end:11890-11909 MsG0080049013.01.T01:intergenic 60.0%
TCATCATCCAGGGCAGGGCA+GGG - contig608end:12118-12137 MsG0080049013.01.T01:intron 60.0%
ACCCGAGGGGGAGTGATGTG+TGG - contig608end:11894-11913 MsG0080049013.01.T01:intron 65.0%
CGAGGGGGAGTGATGTGTGG+TGG - contig608end:11897-11916 MsG0080049013.01.T01:intron 65.0%
TTGGACGACGGACGGACGGA+CGG + contig608end:11978-11997 MsG0080049013.01.T01:intergenic 65.0%
ATCCAGGGCAGGGCAGGGCA+GGG - contig608end:12123-12142 MsG0080049013.01.T01:intron 70.0%
CATCCAGGGCAGGGCAGGGC+AGG - contig608end:12122-12141 MsG0080049013.01.T01:intron 75.0%
! AGGGCAGGGCAGGGCAGGGC+AGG - contig608end:12127-12146 MsG0080049013.01.T01:intron 80.0%
! TGCCCTGCCCTGCCCTGCCC+TGG + contig608end:12128-12147 MsG0080049013.01.T01:intergenic 80.0%
Chromosome Type Strat End Strand Name
contig608end gene 10001 13751 10001 ID=MsG0080049013.01;
contig608end mRNA 10001 13751 10001 ID=MsG0080049013.01.T01;Parent=MsG0080049013.01
contig608end exon 10001 10228 10001 ID=MsG0080049013.01.T01.exon;Parent=MsG0080049013.01.T01
contig608end CDS 10136 10228 10136 ID=MsG0080049013.01.T01.cds;Parent=MsG0080049013.01.T01
contig608end CDS 10549 10661 10549 ID=MsG0080049013.01.T01.cds;Parent=MsG0080049013.01.T01
contig608end exon 10549 10661 10549 ID=MsG0080049013.01.T01.exon;Parent=MsG0080049013.01.T01
contig608end CDS 10810 10912 10810 ID=MsG0080049013.01.T01.cds;Parent=MsG0080049013.01.T01
contig608end exon 10810 10912 10810 ID=MsG0080049013.01.T01.exon;Parent=MsG0080049013.01.T01
contig608end CDS 11001 11233 11001 ID=MsG0080049013.01.T01.cds;Parent=MsG0080049013.01.T01
contig608end exon 11001 11233 11001 ID=MsG0080049013.01.T01.exon;Parent=MsG0080049013.01.T01
contig608end CDS 11291 11305 11291 ID=MsG0080049013.01.T01.cds;Parent=MsG0080049013.01.T01
contig608end exon 11291 11305 11291 ID=MsG0080049013.01.T01.exon;Parent=MsG0080049013.01.T01
contig608end CDS 11604 11618 11604 ID=MsG0080049013.01.T01.cds;Parent=MsG0080049013.01.T01
contig608end exon 11604 11618 11604 ID=MsG0080049013.01.T01.exon;Parent=MsG0080049013.01.T01
contig608end CDS 13110 13145 13110 ID=MsG0080049013.01.T01.cds;Parent=MsG0080049013.01.T01
contig608end exon 13110 13145 13110 ID=MsG0080049013.01.T01.exon;Parent=MsG0080049013.01.T01
contig608end CDS 13219 13254 13219 ID=MsG0080049013.01.T01.cds;Parent=MsG0080049013.01.T01
contig608end exon 13219 13254 13219 ID=MsG0080049013.01.T01.exon;Parent=MsG0080049013.01.T01
contig608end CDS 13453 13524 13453 ID=MsG0080049013.01.T01.cds;Parent=MsG0080049013.01.T01
contig608end exon 13453 13524 13453 ID=MsG0080049013.01.T01.exon;Parent=MsG0080049013.01.T01
contig608end CDS 13608 13701 13608 ID=MsG0080049013.01.T01.cds;Parent=MsG0080049013.01.T01
contig608end exon 13608 13751 13608 ID=MsG0080049013.01.T01.exon;Parent=MsG0080049013.01.T01
Gene Sequence

>MsG0080049013.01.T01

ATGATATATCCAAATTCACTTATAGCTAAACTTTACAATGCAAGATATTATCCTCGATGTAATTTCTTTGAGTCTACATTAGGGGAAGGTATATATTTCGATGATGTATCTCTTATTTCTCAGGTGGTTGGTGATGTCCCTTTAGCTAATCTAAGAGTATCATATTGTGCAAGGATCATAATATGTAATTTGGAAGCTCAAGATAAAGGTGTTACATGTCTTGCAAATTATGTTTTATGGCAGGGCAGGGCAGAGAATGAGTCTTCTCGAGAAGACTTAATTGCCCCCTGCCATTGCAAAGGTACCCAAAAGTATGTCCACAGATCATGTCTCGATAACTGGAGGTCTACCAAGGAGGGCTTTGCTTTTTCTCACTGTACAGAATGCAGAGCTGTCTTCATAATTCGACCAAATGTCCCTAAAGATCGATGGTGGTTGAGATTGAAATTTCAGTTTCTTGTTGCCAGAGATCATGCATTCATTTTCATCATTGTTCAACTCGTTGTTGCTTTCTTGGGAGTGCTTATTTATAAATTCTATGGAGATGAACTTAGAGAAATGTTTGGTTATGAAGAACATCCATACGGATTTTACACAATGGCTGTTCTCGCCATTATTTTGGTGGGTTTGCTCTATGGCTTCTTTATAGCAATAATATGTTGGCAAAGAATCAATGAACGCCACTACCATGTTCTTGCCAAACAAGAATTGACAAAGGAGTATGTGGTAGAAGATCGAGAACATGTAAAGGATGTGCCTGAACTCGACCCCAGCCATGTGACAGAACTAAGGATGTTGGGCCTTTACTAG
Protein sequence

>MsG0080049013.01.T01

MIYPNSLIAKLYNARYYPRCNFFESTLGEGIYFDDVSLISQVVGDVPLANLRVSYCARIIICNLEAQDKGVTCLANYVLWQGRAENESSREDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFSHCTECRAVFIIRPNVPKDRWWLRLKFQFLVARDHAFIFIIVQLVVAFLGVLIYKFYGDELREMFGYEEHPYGFYTMAVLAIILVGLLYGFFIAIICWQRINERHYHVLAKQELTKEYVVEDREHVKDVPELDPSHVTELRMLGLY*