AlfalfaGEDB | MsG0480018918.01

M. sativa cultivar ZhongmuNo.1 / MsG0480018918.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480018918.01.T01	KEH29001.1	73.387	124	2	1	49	172	46	138	2.36E-50	177

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480018918.01.T01	Q9M324	58.065	124	21	1	49	172	43	135	1.09E-40	146

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480018918.01.T01	A0A072UHU0	73.387	124	2	1	49	172	46	138	1.13e-50	177

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048700.01	MsG0480018918.01	0.817457	3.265271e-52	2.379319e-49
MsG0080048701.01	MsG0480018918.01	0.813748	2.187866e-51	1.440773e-48
MsG0080048781.01	MsG0480018918.01	0.813265	2.793352e-51	1.815541e-48
MsG0080048996.01	MsG0480018918.01	0.819545	1.098130e-52	8.475679e-50
MsG0080049140.01	MsG0480018918.01	0.839547	1.484125e-57	2.056247e-54
MsG0180000111.01	MsG0480018918.01	0.837502	5.004452e-57	6.513987e-54
MsG0180000353.01	MsG0480018918.01	0.829129	6.117424e-55	6.204570e-52
MsG0180000360.01	MsG0480018918.01	0.808936	2.424353e-50	1.404372e-47
MsG0180000373.01	MsG0480018918.01	0.858026	1.092653e-62	2.750537e-59
MsG0180002421.01	MsG0480018918.01	0.857728	1.339023e-62	3.337249e-59

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480018918.01.T01	MTR_4g020070	73.387	124	2	1	49	172	46	138	2.86e-54	177
MsG0480018918.01.T01	MTR_4g020070	73.387	124	2	1	49	172	46	138	9.47e-54	178
MsG0480018918.01.T01	MTR_8g031030	57.258	124	22	1	49	172	46	138	1.18e-38	138
MsG0480018918.01.T01	MTR_4g065003	54.839	124	25	1	49	172	47	139	4.32e-38	135
MsG0480018918.01.T01	MTR_4g065003	54.839	124	25	1	49	172	47	139	1.15e-37	135
MsG0480018918.01.T01	MTR_7g077150	54.032	124	26	1	49	172	46	138	1.99e-36	132
MsG0480018918.01.T01	MTR_8g098370	51.613	124	29	1	49	172	48	140	1.07e-33	124
MsG0480018918.01.T01	MTR_8g098370	51.613	124	29	1	49	172	48	140	1.39e-33	124
MsG0480018918.01.T01	MTR_4g098740	49.194	124	32	1	49	172	50	142	1.82e-31	119
MsG0480018918.01.T01	MTR_5g098970	49.640	139	32	3	35	172	66	167	6.02e-30	114

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480018918.01.T01	AT3G54030	58.065	124	21	1	49	172	43	135	1.11e-41	146
MsG0480018918.01.T01	AT4G00710	57.258	124	22	1	49	172	45	137	5.16e-39	139
MsG0480018918.01.T01	AT4G00710	57.258	124	22	1	49	172	45	137	5.16e-39	139
MsG0480018918.01.T01	AT1G63500	55.645	124	24	1	49	172	46	138	1.91e-38	137
MsG0480018918.01.T01	AT5G41260	52.419	124	28	1	49	172	46	138	4.25e-37	134
MsG0480018918.01.T01	AT5G59010	53.226	124	27	1	49	172	42	134	4.98e-34	125
MsG0480018918.01.T01	AT3G09240	47.581	124	34	1	49	172	31	123	1.53e-31	119
MsG0480018918.01.T01	AT3G09240	47.581	124	34	1	49	172	46	138	2.21e-31	118
MsG0480018918.01.T01	AT1G01740	50.806	124	30	1	49	172	43	135	7.73e-31	117
MsG0480018918.01.T01	AT1G01740	50.806	124	30	1	49	172	43	135	8.81e-31	117

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Find 36 sgRNAs with CRISPR-Local

Find 58 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAAAGTAAAACACAACCT+TGG	0.587493	4:-11736779	None:intergenic
AACAATGAATTGTCGAGAAT+CGG	0.387156	4:-11737165	None:intergenic
AACGTTTCAACAAGTTCGCT+TGG	0.507748	4:+11737141	MsG0480018918.01.T01:CDS
ACAATGAATTGTCGAGAATC+GGG	0.460524	4:-11737164	None:intergenic
AGAACACAATGAAGTGAAAG+TGG	0.568385	4:-11737198	None:intergenic
AGATAATATCTTGCATGAAA+TGG	0.426195	4:-11737222	None:intergenic
AGGAAGAATCTAAACAAGTG+GGG	0.655629	4:+11737465	MsG0480018918.01.T01:intron
AGGAGATGAGAGGCTGCTAG+TGG	0.646691	4:+11737535	MsG0480018918.01.T01:CDS
AGTTTATGCCACATGAACTC+TGG	0.555057	4:+11737561	MsG0480018918.01.T01:CDS
ATGCTTAGCCAGAGTTCATG+TGG	0.630751	4:-11737569	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAAAGTAAAACACAACCT+TGG	-	Chr4:11736782-11736801	None:intergenic	30.0%
AACAATGAATTGTCGAGAAT+CGG	-	Chr4:11737168-11737187	None:intergenic	30.0%
TAGGAAGAATCTAAACAAGT+GGG	+	Chr4:11737464-11737483	MsG0480018918.01.T01:intron	30.0%
TCATGCAAGATATTATCTTG+CGG	+	Chr4:11737227-11737246	MsG0480018918.01.T01:CDS	30.0%
TTCAATGGAATTACATGTGT+CGG	-	Chr4:11736875-11736894	None:intergenic	30.0%
ACAATGAATTGTCGAGAATC+GGG	-	Chr4:11737167-11737186	None:intergenic	35.0%
AGAACACAATGAAGTGAAAG+TGG	-	Chr4:11737201-11737220	None:intergenic	35.0%
AGGAAGAATCTAAACAAGTG+GGG	+	Chr4:11737465-11737484	MsG0480018918.01.T01:intron	35.0%
ATGCCTTTGATCAGAATTGT+CGG	-	Chr4:11736837-11736856	None:intergenic	35.0%
CAAACTGTACTCATGAAACT+AGG	-	Chr4:11737000-11737019	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	11736685	11737613	11736685	ID=MsG0480018918.01;Name=MsG0480018918.01
Chr4	mRNA	11736685	11737613	11736685	ID=MsG0480018918.01.T01;Parent=MsG0480018918.01;Name=MsG0480018918.01.T01;_AED=0.63;_eAED=0.72;_QI=0\|0\|0\|1\|0.5\|0.66\|3\|0\|183
Chr4	exon	11736685	11736827	11736685	ID=MsG0480018918.01.T01:exon:7345;Parent=MsG0480018918.01.T01
Chr4	exon	11737016	11737277	11737016	ID=MsG0480018918.01.T01:exon:7346;Parent=MsG0480018918.01.T01
Chr4	exon	11737467	11737613	11737467	ID=MsG0480018918.01.T01:exon:7347;Parent=MsG0480018918.01.T01
Chr4	CDS	11736685	11736827	11736685	ID=MsG0480018918.01.T01:cds;Parent=MsG0480018918.01.T01
Chr4	CDS	11737016	11737277	11737016	ID=MsG0480018918.01.T01:cds;Parent=MsG0480018918.01.T01
Chr4	CDS	11737467	11737613	11737467	ID=MsG0480018918.01.T01:cds;Parent=MsG0480018918.01.T01

Gene Sequence

>MsG0480018918.01.T01

TCCTTCTTATTTTCTTCATGGGGGGTCGTTGCTCTAAATTCTCTTTCTGCTGGTTCCACTCTCATCTCAATACTTCTGTTCTTGAATCCTCTGACCAAGGTTGTGTTTTACTTTGTTATTTTTAGTAGACACATGACACCGCTTTTGGAAGAATTGAAGGCTGCTACAAATGGTTTCTCCTCGGAAAACATAGTTTCTGAGCATGGTGAGAAAGCTCCAAATGTTGGTTACAAAGGGAAACTTGAGAATGGACAGTTGATTGCCGTCAAACGTTTCAACAAGTTCGCTTGGCCCGATTCTCGACAATTCATTGTTTGTTTACTTGCCACTTTCACTTCATTGTGTTCTACCATTTCATGCAAGATATTATCTTGCGGTGCGATCACTGTCCTAGTTCTAATTGTGGAAGAATCTAAACAAGTGGGGGACCTTAGAAGTGATCGTTTGGCGAATTTGATTGGTTGTTGCTATGAAGGAGATGAGAGGCTGCTAGTGGCAGAGTTTATGCCACATGAACTCTGGCTAAGCATCTCTTTCATTGTAGGTTCTTAG

Protein sequence

>MsG0480018918.01.T01

SFLFSSWGVVALNSLSAGSTLISILLFLNPLTKVVFYFVIFSRHMTPLLEELKAATNGFSSENIVSEHGEKAPNVGYKGKLENGQLIAVKRFNKFAWPDSRQFIVCLLATFTSLCSTISCKILSCGAITVLVLIVEESKQVGDLRSDRLANLIGCCYEGDERLLVAEFMPHELWLSISFIVGS*