AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480019190.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480019190.01.T01 MTR_0002s1270 83.905 379 26 1 43 386 22 400 0.0 624
MsG0480019190.01.T01 MTR_7g046380 84.140 372 24 1 39 375 26 397 0.0 613
MsG0480019190.01.T01 MTR_5g077900 79.204 226 12 1 196 386 1 226 3.39e-127 365
MsG0480019190.01.T01 MTR_4g066310 76.471 204 33 1 41 244 11 199 1.66e-108 317
MsG0480019190.01.T01 MTR_0057s0200 100.000 59 0 0 328 386 1 59 1.16e-38 133
MsG0480019190.01.T01 MTR_8g051620 50.420 119 58 1 196 313 1 119 4.62e-38 133
MsG0480019190.01.T01 MTR_8g051620 50.926 108 53 0 196 303 1 108 3.50e-35 125
MsG0480019190.01.T01 MTR_4g066320 88.333 60 6 1 326 384 60 119 5.98e-32 117
MsG0480019190.01.T01 MTR_4g066320 82.609 46 8 0 126 171 1 46 1.06e-18 81.6
MsG0480019190.01.T01 MTR_2g092960 29.412 238 127 5 182 383 984 1216 5.75e-26 110
MsG0480019190.01.T01 MTR_2g092960 42.553 141 57 5 36 175 760 877 2.75e-17 84.3
MsG0480019190.01.T01 MTR_8g017000 29.487 234 121 5 191 386 462 689 5.15e-23 101
MsG0480019190.01.T01 MTR_2g037270 29.487 234 121 5 191 386 462 689 7.04e-23 100
MsG0480019190.01.T01 MTR_0462s0020 27.570 214 113 4 207 382 82 291 9.79e-22 94.7
MsG0480019190.01.T01 MTR_4g048180 31.737 167 107 3 217 382 109 269 7.82e-21 91.7
MsG0480019190.01.T01 MTR_3g028430 75.926 54 4 1 333 386 15 59 5.73e-20 83.2
MsG0480019190.01.T01 MTR_3g011560 28.507 221 127 4 191 386 462 676 1.11e-19 91.3
MsG0480019190.01.T01 MTR_5g020725 70.000 50 10 1 33 77 1 50 4.88e-15 69.7
MsG0480019190.01.T01 MTR_2g086200 66.667 48 16 0 337 384 185 232 6.75e-14 71.2
MsG0480019190.01.T01 MTR_4g066300 90.625 32 3 0 326 357 7 38 1.07e-13 65.9
MsG0480019190.01.T01 MTR_2g023630 25.253 297 180 6 61 323 1 289 3.29e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 83 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCGAAAGTGTTTGGGATTT+TGG 0.107550 4:-15741714 MsG0480019190.01.T01:CDS
CTCACAACTTCAAACAAATT+TGG 0.137777 4:-15742259 MsG0480019190.01.T01:CDS
GTTGATGCAACAAGCATTTC+TGG 0.171896 4:-15742175 MsG0480019190.01.T01:CDS
AAGAAGTTATATTATCTAAT+TGG 0.208399 4:+15740361 None:intergenic
TCTGGATAAACTTAAGACTA+TGG 0.231009 4:-15742157 MsG0480019190.01.T01:CDS
CATCATTTGTTTGCAAGGTT+TGG 0.244894 4:+15742127 None:intergenic
ATCATTTGTTTGCAAGGTTT+GGG 0.305681 4:+15742128 None:intergenic
AGAAATAGATCGAAAGTGTT+TGG 0.315223 4:-15741722 MsG0480019190.01.T01:CDS
TGGTTAACACAGAGCTTTAG+AGG 0.331097 4:-15741246 MsG0480019190.01.T01:intron
GGATTAACATCCAAGCATAC+TGG 0.331920 4:+15741689 None:intergenic
CTGTGTTGTTGTTGTTGACT+TGG 0.348338 4:-15743295 MsG0480019190.01.T01:CDS
GATATCTTAACAAGGGCAAT+TGG 0.355585 4:-15742393 MsG0480019190.01.T01:CDS
GCTGGTTAACATCTATGGTT+TGG 0.363850 4:+15742286 None:intergenic
AACTGTCTAATACACTTTGC+TGG 0.367487 4:+15741910 None:intergenic
GCAATAGAAAGAAGGCAAAA+TGG 0.368092 4:-15741205 MsG0480019190.01.T01:CDS
GAGATGCTGGTTAACATCTA+TGG 0.369363 4:+15742281 None:intergenic
GAAATAGATCGAAAGTGTTT+GGG 0.378893 4:-15741721 MsG0480019190.01.T01:CDS
TAATCCAATAAAACAACTTT+AGG 0.380192 4:+15740465 None:intergenic
CTCCTACTCTGATCTTCATC+AGG 0.402566 4:+15743321 None:intergenic
AGAGGTTCATCAACTTGCTC+AGG 0.406730 4:-15741228 MsG0480019190.01.T01:CDS
GTATTTGGCTCATGTTCTAA+TGG 0.408074 4:+15741949 None:intergenic
GTTGTTGTTGACTTGGATGA+TGG 0.409848 4:-15743288 MsG0480019190.01.T01:CDS
TATCCACAATCATTGCCATT+AGG 0.411955 4:+15741050 None:intergenic
CTGGTTAACATCTATGGTTT+GGG 0.416092 4:+15742287 None:intergenic
GATACTTACTTCAATAGATA+TGG 0.422297 4:+15741584 None:intergenic
TTTGAAGTTGTGAGAGATGC+TGG 0.430377 4:+15742268 None:intergenic
TTGTGGAACAAAGGTGCCTT+TGG 0.430612 4:+15742425 None:intergenic
TCGTGTTCGTGGTGTTGGAC+CGG 0.435043 4:-15742352 MsG0480019190.01.T01:CDS
TCTTGACTTATATAATGCTT+AGG 0.443820 4:-15740795 MsG0480019190.01.T01:exon
AAAGTGTATTAGACAGTTGT+TGG 0.445582 4:-15741905 MsG0480019190.01.T01:CDS
AATTTCATCATTTGTTTGCA+AGG 0.449070 4:+15742122 None:intergenic
GGTGGTCGTGTTCGTGGTGT+TGG 0.450791 4:-15742357 MsG0480019190.01.T01:CDS
TAGTACTAAAACTAAAGTTC+AGG 0.451652 4:-15741657 MsG0480019190.01.T01:CDS
GTTATGCATGGAAGCACAAA+AGG 0.464992 4:-15742075 MsG0480019190.01.T01:CDS
CTGGATAAACTTAAGACTAT+GGG 0.467740 4:-15742156 MsG0480019190.01.T01:CDS
TAGTCAAGAAAGCAACCTAA+TGG 0.467793 4:-15741065 MsG0480019190.01.T01:CDS
CTGCTAATATTACTAAGTCT+TGG 0.472781 4:-15740995 MsG0480019190.01.T01:CDS
AATATTGACGTGGAAAATTG+AGG 0.474049 4:-15740400 MsG0480019190.01.T01:three_prime_UTR
TGCAGAGTTTGAACAAAAGA+TGG 0.484187 4:-15742211 MsG0480019190.01.T01:CDS
ATGATGGAGCTGTGTTGACT+TGG 0.485874 4:-15743272 MsG0480019190.01.T01:CDS
TATAATGCTTAGGATTTACA+TGG 0.492970 4:-15740785 MsG0480019190.01.T01:intron
GTATGATTTGCGAAACCAAT+GGG 0.494818 4:-15740828 MsG0480019190.01.T01:CDS
CAACCTAATGGCAATGATTG+TGG 0.497368 4:-15741053 MsG0480019190.01.T01:CDS
TCATCTTCAGTTAATGCCGT+TGG 0.499036 4:+15740854 None:intergenic
AATATTCCAATCTATAAAAG+AGG 0.502878 4:+15740417 None:intergenic
CGTGTTCGTGGTGTTGGACC+GGG 0.503338 4:-15742351 MsG0480019190.01.T01:CDS
CAAGAAAACAAGTTGCCCAT+TGG 0.504204 4:+15740813 None:intergenic
CTCTGAGCAATTACTTTGGA+AGG 0.505979 4:-15742323 MsG0480019190.01.T01:CDS
TATACTCTGAGCAATTACTT+TGG 0.507307 4:-15742327 MsG0480019190.01.T01:CDS
ATATCTTAACAAGGGCAATT+GGG 0.519829 4:-15742392 MsG0480019190.01.T01:CDS
TAACATCTATGGTTTGGGTA+AGG 0.520225 4:+15742292 None:intergenic
GAGCATGGTGGTCGTGTTCG+TGG 0.528686 4:-15742363 MsG0480019190.01.T01:CDS
CAACTTCAAACAAATTTGGA+AGG 0.540055 4:-15742255 MsG0480019190.01.T01:CDS
TGATTATGATGTGGTTGAGA+TGG 0.544806 4:-15740600 MsG0480019190.01.T01:three_prime_UTR
AGTTGTTGGTGGGTAATGCT+TGG 0.552427 4:-15741891 MsG0480019190.01.T01:CDS
CGCTGCACAAGAAAATTACA+AGG 0.553852 4:-15742043 MsG0480019190.01.T01:CDS
TTGCATCAACTCACGTTCGA+CGG 0.556532 4:+15742188 None:intergenic
GAGGTTCATCAACTTGCTCA+GGG 0.558482 4:-15741227 MsG0480019190.01.T01:CDS
GTGTATTAGACAGTTGTTGG+TGG 0.561452 4:-15741902 MsG0480019190.01.T01:CDS
TGCTCAGGGCAATAGAAAGA+AGG 0.563067 4:-15741213 MsG0480019190.01.T01:CDS
TGTATTAGACAGTTGTTGGT+GGG 0.569307 4:-15741901 MsG0480019190.01.T01:CDS
GATTAACATCCAAGCATACT+GGG 0.579187 4:+15741690 None:intergenic
GATTATGATGTGGTTGAGAT+GGG 0.592046 4:-15740599 MsG0480019190.01.T01:three_prime_UTR
TGTATGATTTGCGAAACCAA+TGG 0.592485 4:-15740829 MsG0480019190.01.T01:CDS
AAGATATCGTCACGTCCTTG+TGG 0.594669 4:+15742408 None:intergenic
TTCAGGAACACATACAAACT+AGG 0.603672 4:-15741640 MsG0480019190.01.T01:CDS
TAATATTACTAAGTCTTGGA+TGG 0.604101 4:-15740991 MsG0480019190.01.T01:CDS
TTACAATGATGATTCTGCTG+TGG 0.605263 4:-15740513 MsG0480019190.01.T01:three_prime_UTR
GCAATTGGGACGAAAGAGCA+TGG 0.610861 4:-15742378 MsG0480019190.01.T01:CDS
GTCACGTCCTTGTGGAACAA+AGG 0.611478 4:+15742416 None:intergenic
GTAGGTATTCAATGATCCAA+CGG 0.638191 4:-15740870 MsG0480019190.01.T01:intron
AACATGAGCCAAATACCGCA+AGG 0.641032 4:-15741942 MsG0480019190.01.T01:CDS
TATTACTAAGTCTTGGATGG+AGG 0.643493 4:-15740988 MsG0480019190.01.T01:intron
GACGTGACGATATCTTAACA+AGG 0.664371 4:-15742401 MsG0480019190.01.T01:CDS
AACCTGATGAAGATCAGAGT+AGG 0.666936 4:-15743323 MsG0480019190.01.T01:CDS
CTAGTTGAAGAGACTGCCAA+AGG 0.667624 4:-15742441 MsG0480019190.01.T01:CDS
AAAGGCACCTTTGTTCCACA+AGG 0.671776 4:-15742423 MsG0480019190.01.T01:CDS
TATAGATTGGAATATTGACG+TGG 0.694171 4:-15740410 MsG0480019190.01.T01:three_prime_UTR
GATGAAAACTGATTATGATG+TGG 0.700880 4:-15740609 MsG0480019190.01.T01:three_prime_UTR
ACGTGACGATATCTTAACAA+GGG 0.719315 4:-15742400 MsG0480019190.01.T01:CDS
TAATTGCTCAGAGTATAACC+CGG 0.737625 4:+15742333 None:intergenic
TGCACAAGAAAATTACAAGG+AGG 0.749080 4:-15742040 MsG0480019190.01.T01:CDS
ATTGGGACGAAAGAGCATGG+TGG 0.751315 4:-15742375 MsG0480019190.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACTAATTACTATATAAAAA+TGG - Chr4:15742602-15742621 MsG0480019190.01.T01:intron 10.0%
!!! TTTTTTTACTATTATCAATA+TGG - Chr4:15741877-15741896 MsG0480019190.01.T01:CDS 10.0%
!! AAGAAGTTATATTATCTAAT+TGG + Chr4:15743343-15743362 None:intergenic 15.0%
!! ACATCATAATTTATATATAC+AGG - Chr4:15740976-15740995 MsG0480019190.01.T01:intron 15.0%
!!! CTTTGATGATTTTTTTAATT+TGG - Chr4:15742365-15742384 MsG0480019190.01.T01:CDS 15.0%
!!! TGTTAATTTTAAATTTGTCT+AGG - Chr4:15741932-15741951 MsG0480019190.01.T01:CDS 15.0%
!! AACAAAATTTAATTCTTGAC+TGG - Chr4:15741078-15741097 MsG0480019190.01.T01:intron 20.0%
!! AACACTTAAATATTGAATTG+TGG + Chr4:15741916-15741935 None:intergenic 20.0%
!! AATATTCCAATCTATAAAAG+AGG + Chr4:15743287-15743306 None:intergenic 20.0%
!! CTTTATAAATGAACTTGAAA+AGG + Chr4:15741165-15741184 None:intergenic 20.0%
!! TAATCCAATAAAACAACTTT+AGG + Chr4:15743239-15743258 None:intergenic 20.0%
!! TTTACCATGTAAAAATATGT+AGG - Chr4:15741232-15741251 MsG0480019190.01.T01:CDS 20.0%
! AATTTCATCATTTGTTTGCA+AGG + Chr4:15741582-15741601 None:intergenic 25.0%
! ACGTAGAAGAACAATTATTA+AGG + Chr4:15742174-15742193 None:intergenic 25.0%
! ATGGATAAGAAGAGAAAATA+GGG - Chr4:15740554-15740573 MsG0480019190.01.T01:three_prime_UTR 25.0%
! CAAATGTCAAATTATGAGAT+TGG + Chr4:15742956-15742975 None:intergenic 25.0%
! GATACTTACTTCAATAGATA+TGG + Chr4:15742120-15742139 None:intergenic 25.0%
! GTTAATAATTATTTGTCCCA+AGG - Chr4:15742212-15742231 MsG0480019190.01.T01:CDS 25.0%
! TAATATTACTAAGTCTTGGA+TGG - Chr4:15742710-15742729 MsG0480019190.01.T01:intron 25.0%
! TAGTACTAAAACTAAAGTTC+AGG - Chr4:15742044-15742063 MsG0480019190.01.T01:CDS 25.0%
! TATAATGCTTAGGATTTACA+TGG - Chr4:15742916-15742935 MsG0480019190.01.T01:intron 25.0%
! TCTTGACTTATATAATGCTT+AGG - Chr4:15742906-15742925 MsG0480019190.01.T01:intron 25.0%
! TTTATTAACCTACACATTGT+AGG - Chr4:15742813-15742832 MsG0480019190.01.T01:intron 25.0%
!! AATTTAATTCTTGACTGGTT+CGG - Chr4:15741083-15741102 MsG0480019190.01.T01:intron 25.0%
!! ACTTTTCTATTCTACAACTT+TGG - Chr4:15741837-15741856 MsG0480019190.01.T01:intron 25.0%
!!! GAATCCTACATATTTTTACA+TGG + Chr4:15741239-15741258 None:intergenic 25.0%
!!! GTTATACATTTTAGTGTTGT+AGG + Chr4:15742346-15742365 None:intergenic 25.0%
!!! GTTTTAGTACTATGATCTTT+TGG + Chr4:15742036-15742055 None:intergenic 25.0%
AAAGTGTATTAGACAGTTGT+TGG - Chr4:15741796-15741815 MsG0480019190.01.T01:intron 30.0%
AAGAAGAGAAAATAGGGTTT+GGG - Chr4:15740560-15740579 MsG0480019190.01.T01:three_prime_UTR 30.0%
AATATTGACGTGGAAAATTG+AGG - Chr4:15743301-15743320 MsG0480019190.01.T01:CDS 30.0%
AATCTACACCATACTTACTT+CGG + Chr4:15742529-15742548 None:intergenic 30.0%
ACAACTAAACTATTGTCCTT+GGG + Chr4:15742231-15742250 None:intergenic 30.0%
ATAAAAAACCTTGCGGTATT+TGG + Chr4:15741770-15741789 None:intergenic 30.0%
ATATCTTAACAAGGGCAATT+GGG - Chr4:15741309-15741328 MsG0480019190.01.T01:intron 30.0%
ATCATTTGTTTGCAAGGTTT+GGG + Chr4:15741576-15741595 None:intergenic 30.0%
ATGTTTAGACAACAGAGAAT+AGG - Chr4:15740889-15740908 MsG0480019190.01.T01:intron 30.0%
ATTGAATACCTACAATGTGT+AGG + Chr4:15742824-15742843 None:intergenic 30.0%
CAACTTCAAACAAATTTGGA+AGG - Chr4:15741446-15741465 MsG0480019190.01.T01:intron 30.0%
CTCACAACTTCAAACAAATT+TGG - Chr4:15741442-15741461 MsG0480019190.01.T01:intron 30.0%
CTGCTAATATTACTAAGTCT+TGG - Chr4:15742706-15742725 MsG0480019190.01.T01:intron 30.0%
CTGGATAAACTTAAGACTAT+GGG - Chr4:15741545-15741564 MsG0480019190.01.T01:intron 30.0%
CTTTCTTGACTACAAATGAA+TGG + Chr4:15742628-15742647 None:intergenic 30.0%
GATGAAAACTGATTATGATG+TGG - Chr4:15743092-15743111 MsG0480019190.01.T01:intron 30.0%
GATGGATAAGAAGAGAAAAT+AGG - Chr4:15740553-15740572 MsG0480019190.01.T01:three_prime_UTR 30.0%
TAAGAAGAGAAAATAGGGTT+TGG - Chr4:15740559-15740578 MsG0480019190.01.T01:three_prime_UTR 30.0%
TATACTCTGAGCAATTACTT+TGG - Chr4:15741374-15741393 MsG0480019190.01.T01:intron 30.0%
TATAGATTGGAATATTGACG+TGG - Chr4:15743291-15743310 MsG0480019190.01.T01:CDS 30.0%
TCATTGCTTCATTAAGATCT+TGG + Chr4:15742269-15742288 None:intergenic 30.0%
TCTGGATAAACTTAAGACTA+TGG - Chr4:15741544-15741563 MsG0480019190.01.T01:intron 30.0%
TGTTCAAAAATTGCTATGCA+TGG - Chr4:15741700-15741719 MsG0480019190.01.T01:CDS 30.0%
TGTTTAGACAACAGAGAATA+GGG - Chr4:15740890-15740909 MsG0480019190.01.T01:intron 30.0%
TTTGTATCTGTCTTAATGTG+TGG - Chr4:15743002-15743021 MsG0480019190.01.T01:intron 30.0%
! AGAGAGAGTAGAATTTTGAA+CGG - Chr4:15742977-15742996 MsG0480019190.01.T01:intron 30.0%
! CAATTTTTGAACATTGTCGA+TGG + Chr4:15741693-15741712 None:intergenic 30.0%
! CATATGCCTCTTTTATAGAT+TGG - Chr4:15743278-15743297 MsG0480019190.01.T01:CDS 30.0%
!! AGAAATAGATCGAAAGTGTT+TGG - Chr4:15741979-15741998 MsG0480019190.01.T01:CDS 30.0%
!! GAAATAGATCGAAAGTGTTT+GGG - Chr4:15741980-15741999 MsG0480019190.01.T01:CDS 30.0%
!! TCTGCCTAAAGTTGTTTTAT+TGG - Chr4:15743232-15743251 MsG0480019190.01.T01:intron 30.0%
AACTGTCTAATACACTTTGC+TGG + Chr4:15741794-15741813 None:intergenic 35.0%
ACGTGACGATATCTTAACAA+GGG - Chr4:15741301-15741320 MsG0480019190.01.T01:intron 35.0%
ATCTACACCATACTTACTTC+GGG + Chr4:15742528-15742547 None:intergenic 35.0%
CATCATTTGTTTGCAAGGTT+TGG + Chr4:15741577-15741596 None:intergenic 35.0%
CCTGAAAAAGTTGTTATGCA+TGG - Chr4:15741614-15741633 MsG0480019190.01.T01:CDS 35.0%
CTGGTTAACATCTATGGTTT+GGG + Chr4:15741417-15741436 None:intergenic 35.0%
GACAACTAAACTATTGTCCT+TGG + Chr4:15742232-15742251 None:intergenic 35.0%
GATATCTTAACAAGGGCAAT+TGG - Chr4:15741308-15741327 MsG0480019190.01.T01:intron 35.0%
GATTAACATCCAAGCATACT+GGG + Chr4:15742014-15742033 None:intergenic 35.0%
GATTATGATGTGGTTGAGAT+GGG - Chr4:15743102-15743121 MsG0480019190.01.T01:intron 35.0%
GCAATAGAAAGAAGGCAAAA+TGG - Chr4:15742496-15742515 MsG0480019190.01.T01:intron 35.0%
GTAGGTATTCAATGATCCAA+CGG - Chr4:15742831-15742850 MsG0480019190.01.T01:intron 35.0%
GTTTAGACAACAGAGAATAG+GGG - Chr4:15740891-15740910 MsG0480019190.01.T01:intron 35.0%
TAATTGCTCAGAGTATAACC+CGG + Chr4:15741371-15741390 None:intergenic 35.0%
TAGTCAAGAAAGCAACCTAA+TGG - Chr4:15742636-15742655 MsG0480019190.01.T01:intron 35.0%
TATCCACAATCATTGCCATT+AGG + Chr4:15742654-15742673 None:intergenic 35.0%
TATTACTAAGTCTTGGATGG+AGG - Chr4:15742713-15742732 MsG0480019190.01.T01:intron 35.0%
TGATTATGATGTGGTTGAGA+TGG - Chr4:15743101-15743120 MsG0480019190.01.T01:intron 35.0%
TGCACAAGAAAATTACAAGG+AGG - Chr4:15741661-15741680 MsG0480019190.01.T01:CDS 35.0%
TGCAGAGTTTGAACAAAAGA+TGG - Chr4:15741490-15741509 MsG0480019190.01.T01:intron 35.0%
TGCTGGAATAAAAAACCTTG+CGG + Chr4:15741777-15741796 None:intergenic 35.0%
TGTATTAGACAGTTGTTGGT+GGG - Chr4:15741800-15741819 MsG0480019190.01.T01:intron 35.0%
TTACAATGATGATTCTGCTG+TGG - Chr4:15743188-15743207 MsG0480019190.01.T01:intron 35.0%
TTCAGGAACACATACAAACT+AGG - Chr4:15742061-15742080 MsG0480019190.01.T01:CDS 35.0%
TTTGTGAAAAGCGGAAATAG+CGG + Chr4:15740708-15740727 None:intergenic 35.0%
! CTTGTAATTTTCTTGTGCAG+CGG + Chr4:15741660-15741679 None:intergenic 35.0%
! GTATGATTTGCGAAACCAAT+GGG - Chr4:15742873-15742892 MsG0480019190.01.T01:intron 35.0%
! GTATTTGGCTCATGTTCTAA+TGG + Chr4:15741755-15741774 None:intergenic 35.0%
! GTGTTTGTCTTTTTGTACGA+TGG - Chr4:15740535-15740554 MsG0480019190.01.T01:three_prime_UTR 35.0%
! TAACATCTATGGTTTGGGTA+AGG + Chr4:15741412-15741431 None:intergenic 35.0%
! TGTATGATTTGCGAAACCAA+TGG - Chr4:15742872-15742891 MsG0480019190.01.T01:intron 35.0%
! TTCTTTTCAAACTGCAGTGA+AGG + Chr4:15741113-15741132 None:intergenic 35.0%
!! CCATGCATAACAACTTTTTC+AGG + Chr4:15741617-15741636 None:intergenic 35.0%
!!! ATCGAAAGTGTTTGGGATTT+TGG - Chr4:15741987-15742006 MsG0480019190.01.T01:CDS 35.0%
AACCTGATGAAGATCAGAGT+AGG - Chr4:15740378-15740397 MsG0480019190.01.T01:three_prime_UTR 40.0%
CAACCTAATGGCAATGATTG+TGG - Chr4:15742648-15742667 MsG0480019190.01.T01:intron 40.0%
CAAGAAAACAAGTTGCCCAT+TGG + Chr4:15742891-15742910 None:intergenic 40.0%
CGCTGCACAAGAAAATTACA+AGG - Chr4:15741658-15741677 MsG0480019190.01.T01:CDS 40.0%
CTCTGAGCAATTACTTTGGA+AGG - Chr4:15741378-15741397 MsG0480019190.01.T01:intron 40.0%
GACAAAAATGTCCCTCCAAA+TGG - Chr4:15740588-15740607 MsG0480019190.01.T01:three_prime_UTR 40.0%
GACGTGACGATATCTTAACA+AGG - Chr4:15741300-15741319 MsG0480019190.01.T01:intron 40.0%
GCTGGTTAACATCTATGGTT+TGG + Chr4:15741418-15741437 None:intergenic 40.0%
GGATTAACATCCAAGCATAC+TGG + Chr4:15742015-15742034 None:intergenic 40.0%
GTATCTGTCTTAATGTGTGG+TGG - Chr4:15743005-15743024 MsG0480019190.01.T01:intron 40.0%
GTGTATTAGACAGTTGTTGG+TGG - Chr4:15741799-15741818 MsG0480019190.01.T01:intron 40.0%
GTTGATGCAACAAGCATTTC+TGG - Chr4:15741526-15741545 MsG0480019190.01.T01:intron 40.0%
TCATCTTCAGTTAATGCCGT+TGG + Chr4:15742850-15742869 None:intergenic 40.0%
TCCTCTCTTTCACGCAAAAA+CGG + Chr4:15740859-15740878 None:intergenic 40.0%
TTCAGCAAAGAATGCAGAGA+AGG + Chr4:15741190-15741209 None:intergenic 40.0%
! CTGTGTTGTTGTTGTTGACT+TGG - Chr4:15740406-15740425 MsG0480019190.01.T01:three_prime_UTR 40.0%
! GAGATGCTGGTTAACATCTA+TGG + Chr4:15741423-15741442 None:intergenic 40.0%
! GATCTTGGTGCATTGAACAA+AGG + Chr4:15742254-15742273 None:intergenic 40.0%
! GTCTTAATGTGTGGTGGTTT+TGG - Chr4:15743011-15743030 MsG0480019190.01.T01:intron 40.0%
! GTTATGCATGGAAGCACAAA+AGG - Chr4:15741626-15741645 MsG0480019190.01.T01:CDS 40.0%
! TGGTTAACACAGAGCTTTAG+AGG - Chr4:15742385-15742404 MsG0480019190.01.T01:CDS 40.0%
! TTTGAAGTTGTGAGAGATGC+TGG + Chr4:15741436-15741455 None:intergenic 40.0%
! TTTTTGCGTGAAAGAGAGGA+TGG - Chr4:15740859-15740878 MsG0480019190.01.T01:CDS 40.0%
!! GTTGTTGTTGACTTGGATGA+TGG - Chr4:15740413-15740432 MsG0480019190.01.T01:three_prime_UTR 40.0%
AACATGAGCCAAATACCGCA+AGG - Chr4:15741759-15741778 MsG0480019190.01.T01:intron 45.0%
AAGATATCGTCACGTCCTTG+TGG + Chr4:15741296-15741315 None:intergenic 45.0%
AAGATCAGAGCTGTGAACGA+TGG - Chr4:15740464-15740483 MsG0480019190.01.T01:three_prime_UTR 45.0%
CAACAGAGAATAGGGGAGAA+AGG - Chr4:15740898-15740917 MsG0480019190.01.T01:intron 45.0%
CCACTTAAGCACCATTTGGA+GGG + Chr4:15740602-15740621 None:intergenic 45.0%
CCGAGATCTGTTGTCAATTG+CGG + Chr4:15740804-15740823 None:intergenic 45.0%
CCGCAATTGACAACAGATCT+CGG - Chr4:15740801-15740820 MsG0480019190.01.T01:CDS 45.0%
CCTCCAAATGGTGCTTAAGT+GGG - Chr4:15740600-15740619 MsG0480019190.01.T01:three_prime_UTR 45.0%
CGAGATCTGTTGTCAATTGC+GGG + Chr4:15740803-15740822 None:intergenic 45.0%
CTAGTTGAAGAGACTGCCAA+AGG - Chr4:15741260-15741279 MsG0480019190.01.T01:intron 45.0%
CTCCAAATGGTGCTTAAGTG+GGG - Chr4:15740601-15740620 MsG0480019190.01.T01:three_prime_UTR 45.0%
CTCCTACTCTGATCTTCATC+AGG + Chr4:15740383-15740402 None:intergenic 45.0%
GAGAATAGGGGAGAAAGGAA+TGG - Chr4:15740903-15740922 MsG0480019190.01.T01:intron 45.0%
GTTTCGTCCCGAAGTAAGTA+TGG - Chr4:15742518-15742537 MsG0480019190.01.T01:intron 45.0%
TCCAAATGGTGCTTAAGTGG+GGG - Chr4:15740602-15740621 MsG0480019190.01.T01:three_prime_UTR 45.0%
TCTCTTTCACGCAAAAACGG+AGG + Chr4:15740856-15740875 None:intergenic 45.0%
TGCTCAGGGCAATAGAAAGA+AGG - Chr4:15742488-15742507 MsG0480019190.01.T01:intron 45.0%
TGGAGAAGAAGAGAGAAGAG+CGG - Chr4:15740510-15740529 MsG0480019190.01.T01:three_prime_UTR 45.0%
TTGCATCAACTCACGTTCGA+CGG + Chr4:15741516-15741535 None:intergenic 45.0%
TTGTTCTTCTACGTGTGCAG+AGG - Chr4:15742180-15742199 MsG0480019190.01.T01:CDS 45.0%
! AGAGGTTCATCAACTTGCTC+AGG - Chr4:15742473-15742492 MsG0480019190.01.T01:intron 45.0%
! AGTTGTTGGTGGGTAATGCT+TGG - Chr4:15741810-15741829 MsG0480019190.01.T01:intron 45.0%
! GAGGTTCATCAACTTGCTCA+GGG - Chr4:15742474-15742493 MsG0480019190.01.T01:intron 45.0%
! GATTTTGGACCCAGTATGCT+TGG - Chr4:15742002-15742021 MsG0480019190.01.T01:CDS 45.0%
!! AAAGGCACCTTTGTTCCACA+AGG - Chr4:15741278-15741297 MsG0480019190.01.T01:intron 45.0%
!! ATGATGGAGCTGTGTTGACT+TGG - Chr4:15740429-15740448 MsG0480019190.01.T01:three_prime_UTR 45.0%
!! TCCGTTTTTGCGTGAAAGAG+AGG - Chr4:15740855-15740874 MsG0480019190.01.T01:CDS 45.0%
!! TTGTGGAACAAAGGTGCCTT+TGG + Chr4:15741279-15741298 None:intergenic 45.0%
!!! GAAATAGCGGCCGCTTTTAT+TGG + Chr4:15740695-15740714 None:intergenic 45.0%
!! AAAAGTAATTAATATTAATA+AGG + Chr4:15742796-15742815 None:intergenic 5.0%
!! TATTCTATAATAAATTATAT+TGG - Chr4:15740946-15740965 MsG0480019190.01.T01:intron 5.0%
CACCACGCGTTTGTGAAAAG+CGG + Chr4:15740717-15740736 None:intergenic 50.0%
CAGAGCTGTGAACGATGGAA+TGG - Chr4:15740469-15740488 MsG0480019190.01.T01:three_prime_UTR 50.0%
CCAAATGGTGCTTAAGTGGG+GGG - Chr4:15740603-15740622 MsG0480019190.01.T01:three_prime_UTR 50.0%
CCCACTTAAGCACCATTTGG+AGG + Chr4:15740603-15740622 None:intergenic 50.0%
CCCTCCAAATGGTGCTTAAG+TGG - Chr4:15740599-15740618 MsG0480019190.01.T01:three_prime_UTR 50.0%
GCAATTGGGACGAAAGAGCA+TGG - Chr4:15741323-15741342 MsG0480019190.01.T01:intron 50.0%
GGAGAAGAGAGAAGAGCGAT+TGG - Chr4:15740490-15740509 MsG0480019190.01.T01:three_prime_UTR 50.0%
GTCAAATAGCCCGCTTTCCT+GGG + Chr4:15740651-15740670 None:intergenic 50.0%
GTCACGTCCTTGTGGAACAA+AGG + Chr4:15741288-15741307 None:intergenic 50.0%
TTGTCAATTGCGGGCAAACG+CGG + Chr4:15740794-15740813 None:intergenic 50.0%
! ATTGGGACGAAAGAGCATGG+TGG - Chr4:15741326-15741345 MsG0480019190.01.T01:intron 50.0%
! CTTTTCACAAACGCGTGGTG+CGG - Chr4:15740717-15740736 MsG0480019190.01.T01:intron 50.0%
! TCGTATTTTCACCCAGACCC+AGG - Chr4:15740631-15740650 MsG0480019190.01.T01:intron 50.0%
!! TTCCGCTTTTCACAAACGCG+TGG - Chr4:15740712-15740731 MsG0480019190.01.T01:intron 50.0%
CCCCCCACTTAAGCACCATT+TGG + Chr4:15740606-15740625 None:intergenic 55.0%
CGCTCCGCGTCCAATAAAAG+CGG - Chr4:15740682-15740701 MsG0480019190.01.T01:intron 55.0%
GGTCAAATAGCCCGCTTTCC+TGG + Chr4:15740652-15740671 None:intergenic 55.0%
TCTACGTGTGCAGAGGACAC+TGG - Chr4:15742187-15742206 MsG0480019190.01.T01:CDS 55.0%
TTCACCCAGACCCAGGAAAG+CGG - Chr4:15740638-15740657 MsG0480019190.01.T01:intron 55.0%
! CGCTTTTATTGGACGCGGAG+CGG + Chr4:15740684-15740703 None:intergenic 55.0%
! TCGTGTTCGTGGTGTTGGAC+CGG - Chr4:15741349-15741368 MsG0480019190.01.T01:intron 55.0%
ATAGCCCGCTTTCCTGGGTC+TGG + Chr4:15740646-15740665 None:intergenic 60.0%
GACGCGGAGCGGTTCAAATG+CGG + Chr4:15740673-15740692 None:intergenic 60.0%
GAGCATGGTGGTCGTGTTCG+TGG - Chr4:15741338-15741357 MsG0480019190.01.T01:intron 60.0%
GGTGGTCGTGTTCGTGGTGT+TGG - Chr4:15741344-15741363 MsG0480019190.01.T01:intron 60.0%
TAGCCCGCTTTCCTGGGTCT+GGG + Chr4:15740645-15740664 None:intergenic 60.0%
TCACCCAGACCCAGGAAAGC+GGG - Chr4:15740639-15740658 MsG0480019190.01.T01:intron 60.0%
! CGTGTTCGTGGTGTTGGACC+GGG - Chr4:15741350-15741369 MsG0480019190.01.T01:intron 60.0%
!!! GCGGCCGCTTTTATTGGACG+CGG + Chr4:15740689-15740708 None:intergenic 60.0%
CGGTCGCGTTCTGACGCGCT+AGG - Chr4:15740737-15740756 MsG0480019190.01.T01:intron 70.0%
GGGCAAACGCGGCGCGATCG+CGG + Chr4:15740783-15740802 None:intergenic 75.0%
! AACGCGGCGCGATCGCGGCG+CGG + Chr4:15740778-15740797 None:intergenic 80.0%
! GGCGCGATCGCGGCGCGGAG+CGG + Chr4:15740773-15740792 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
Chr4 gene 15740356 15743367 15740356 ID=MsG0480019190.01;Name=MsG0480019190.01
Chr4 mRNA 15740356 15743367 15740356 ID=MsG0480019190.01.T01;Parent=MsG0480019190.01;Name=MsG0480019190.01.T01;_AED=0.27;_eAED=0.27;_QI=0|0.5|0.57|0.85|0.83|0.71|7|285|386
Chr4 exon 15740356 15740630 15740356 ID=MsG0480019190.01.T01:exon:4188;Parent=MsG0480019190.01.T01
Chr4 exon 15740786 15740888 15740786 ID=MsG0480019190.01.T01:exon:4187;Parent=MsG0480019190.01.T01
Chr4 exon 15740989 15741084 15740989 ID=MsG0480019190.01.T01:exon:4186;Parent=MsG0480019190.01.T01
Chr4 exon 15741193 15741256 15741193 ID=MsG0480019190.01.T01:exon:4185;Parent=MsG0480019190.01.T01
Chr4 exon 15741593 15741769 15741593 ID=MsG0480019190.01.T01:exon:4184;Parent=MsG0480019190.01.T01
Chr4 exon 15741859 15742469 15741859 ID=MsG0480019190.01.T01:exon:4183;Parent=MsG0480019190.01.T01
Chr4 exon 15743248 15743367 15743248 ID=MsG0480019190.01.T01:exon:4182;Parent=MsG0480019190.01.T01
Chr4 CDS 15743248 15743367 15743248 ID=MsG0480019190.01.T01:cds;Parent=MsG0480019190.01.T01
Chr4 CDS 15741859 15742469 15741859 ID=MsG0480019190.01.T01:cds;Parent=MsG0480019190.01.T01
Chr4 CDS 15741593 15741769 15741593 ID=MsG0480019190.01.T01:cds;Parent=MsG0480019190.01.T01
Chr4 CDS 15741193 15741256 15741193 ID=MsG0480019190.01.T01:cds;Parent=MsG0480019190.01.T01
Chr4 CDS 15740989 15741084 15740989 ID=MsG0480019190.01.T01:cds;Parent=MsG0480019190.01.T01
Chr4 CDS 15740796 15740888 15740796 ID=MsG0480019190.01.T01:cds;Parent=MsG0480019190.01.T01
Chr4 three_prime_UTR 15740786 15740795 15740786 ID=MsG0480019190.01.T01:three_prime_utr;Parent=MsG0480019190.01.T01
Chr4 three_prime_UTR 15740356 15740630 15740356 ID=MsG0480019190.01.T01:three_prime_utr;Parent=MsG0480019190.01.T01
Gene Sequence

>MsG0480019190.01.T01

ATGGAGAAAGAAAGAAAGAACAAACCTGATGAAGATCAGAGTAGGAGCAGCTGTGTTGTTGTTGTTGACTTGGATGATGGAGCTGTGTTGACTTGGATGATGAAGATCAAGATCAGAGCTGATTCTCTAGTTGAAGAGACTGCCAAAGGCACCTTTGTTCCACAAGGACGTGACGATATCTTAACAAGGGCAATTGGGACGAAAGAGCATGGTGGTCGTGTTCGTGGTGTTGGACCGGGTTATACTCTGAGCAATTACTTTGGAAGGTCTTCACGCCTTACCCAAACCATAGATGTTAACCAGCATCTCTCACAACTTCAAACAAATTTGGAAGGACAGATTAAAGAAAAATTTGATGCAGAGTTTGAACAAAAGATGGCCGTCGAACGTGAGTTGATGCAACAAGCATTTCTGGATAAACTTAAGACTATGGGTTTCTCCCAAACCTTGCAAACAAATGATGAAATTGAGCATAGTAGTCCTGAAAAAGTTGTTATGCATGGAAGCACAAAAGGTTCTTGTACCGCTGCACAAGAAAATTACAAGGAGGACTTGACCATCGACAATGTTCAAAAATTGCTATGCATGGTTTTGAGAAGTGAAGAAGATATACGCATACCATTAGAACATGAGCCAAATACCGCAAGGTTTTTTATTCCAGCAAAGTGTATTAGACAGTTGTTGGTGGGTAATGCTTGGCTTGACTTTTCTATTCTACAACTTTGGTGCACGTGTATGCATTGTCTCTGTATCTCAAGAAATAGATCGAAAGTGTTTGGGATTTTGGACCCAGTATGCTTGGATGTTAATCCAAAAGATCATAGTACTAAAACTAAAGTTCAGGAACACATACAAACTAGGTTGCGTGATTTGAACAAAGTGTGTTACTTAGCACCATATCTATTGAAAGCTTTAGAGGTTCATCAACTTGCTCAGGGCAATAGAAAGAAGGCAAAATGGTTTCGTCCCGAATCAAGAAAGCAACCTAATGGCAATGATTGTGGATACTATGTGATGAAGAATATGCTAGATATCATATCTGCTAATATTACTAAGTCTTGGATGGAGGTATTCAATGATCCAACGGCATTAACTGAAGATGACTTGTATGATTTGCGAAACCAATGGGCAACTTGTTTTCTTGACTTATATAATGCTTAG
Protein sequence

>MsG0480019190.01.T01

MEKERKNKPDEDQSRSSCVVVVDLDDGAVLTWMMKIKIRADSLVEETAKGTFVPQGRDDILTRAIGTKEHGGRVRGVGPGYTLSNYFGRSSRLTQTIDVNQHLSQLQTNLEGQIKEKFDAEFEQKMAVERELMQQAFLDKLKTMGFSQTLQTNDEIEHSSPEKVVMHGSTKGSCTAAQENYKEDLTIDNVQKLLCMVLRSEEDIRIPLEHEPNTARFFIPAKCIRQLLVGNAWLDFSILQLWCTCMHCLCISRNRSKVFGILDPVCLDVNPKDHSTKTKVQEHIQTRLRDLNKVCYLAPYLLKALEVHQLAQGNRKKAKWFRPESRKQPNGNDCGYYVMKNMLDIISANITKSWMEVFNDPTALTEDDLYDLRNQWATCFLDLYNA*