AlfalfaGEDB | MsG0480019889.01

M. sativa cultivar ZhongmuNo.1 / MsG0480019889.01

KEGG: -
GO: -
PFAM: PF09495

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480019889.01.T01	XP_024641188.1	51.471	204	72	4	137	316	317	517	3.36E-53	197

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480019889.01.T01	A0A396HF17	51.471	204	72	4	137	316	317	517	1.60e-53	197

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180000799.01	MsG0480019889.01	0.827093	1.892443e-54	1.808659e-51
MsG0180002491.01	MsG0480019889.01	0.826629	2.442105e-54	2.302729e-51
MsG0180004606.01	MsG0480019889.01	0.805399	1.359933e-49	7.187619e-47
MsG0480019889.01	MsG0480020372.01	0.801960	7.034468e-49	3.404017e-46
MsG0480019889.01	MsG0580025134.01	0.832113	1.137556e-55	1.259213e-52
MsG0480019889.01	MsG0580025408.01	0.847349	1.223528e-59	2.168384e-56
MsG0480019889.01	MsG0580029300.01	0.803013	4.267920e-49	2.121357e-46
MsG0480019889.01	MsG0680034395.01	0.830823	2.363129e-55	2.518203e-52
MsG0480019889.01	MsG0780039340.01	0.811183	7.953696e-51	4.890353e-48
MsG0480019889.01	MsG0780040338.01	0.813477	2.509608e-51	1.640669e-48

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480019889.01.T01	MTR_0512s0010	98.701	77	1	0	353	429	1	77	3.70e-47	157
MsG0480019889.01.T01	MTR_4g101060	90.323	62	6	0	364	425	12	73	4.02e-33	120
MsG0480019889.01.T01	MTR_1g064650	36.257	171	57	3	175	325	185	323	2.77e-20	91.7
MsG0480019889.01.T01	MTR_5g095460	52.308	65	31	0	154	218	4	68	2.56e-18	80.5
MsG0480019889.01.T01	MTR_0251s0060	31.472	197	78	6	141	327	202	351	2.36e-17	83.6
MsG0480019889.01.T01	MTR_0018s0300	33.679	193	55	5	105	297	129	248	1.21e-16	80.1
MsG0480019889.01.T01	MTR_2g094423	68.889	45	14	0	136	180	152	196	1.82e-15	75.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480019889.01.T01	AT3G52040	60.674	89	35	0	353	441	1	89	4.05e-30	112

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Find 146 sgRNAs with CRISPR-Local

Find 545 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGCTTATGCACCAATT+CGG	0.456337	4:-29011121	MsG0480019889.01.T01:CDS
AAACTGACAGGTTATATAAT+AGG	0.360225	4:-29007830	MsG0480019889.01.T01:intron
AAAGGGACAATCCCCTTTAT+TGG	0.169398	4:+29002668	None:intergenic
AAAGTACCTCAAACTCGCAA+AGG	0.619602	4:-29006389	MsG0480019889.01.T01:intron
AAATAACACTACAAATGGAA+AGG	0.600687	4:+29002785	None:intergenic
AACCTCTTCGTAGACAGGTT+GGG	0.510197	4:+29008976	None:intergenic
AACGAAAGTTACAAAGGATA+TGG	0.347960	4:-29006267	MsG0480019889.01.T01:CDS
AATAGCATCCGCAACATGGC+AGG	0.526516	4:-29011403	MsG0480019889.01.T01:CDS
AATCTAAATGACATAAAACA+AGG	0.637664	4:+29002605	None:intergenic
AATGGAAAGGTAAATAATGA+AGG	0.514505	4:+29002798	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGGTTTAGTCGTTTAGA+TGG	-	Chr4:29007297-29007316	MsG0480019889.01.T01:intron	30.0%
AAATTCTTTCATCAACCAGT+TGG	-	Chr4:29006062-29006081	MsG0480019889.01.T01:intron	30.0%
AACAGTTTAAACAATGGTTG+AGG	-	Chr4:29008558-29008577	MsG0480019889.01.T01:intron	30.0%
AACGAAAGTTACAAAGGATA+TGG	-	Chr4:29007778-29007797	MsG0480019889.01.T01:intron	30.0%
ACAAGGACTGCATAAAAATT+AGG	+	Chr4:29010810-29010829	None:intergenic	30.0%
ACGAAAAATATGCAATACAG+AGG	-	Chr4:29003911-29003930	MsG0480019889.01.T01:intron	30.0%
ACGAAACAGTGACAAAAAAT+TGG	-	Chr4:29003942-29003961	MsG0480019889.01.T01:intron	30.0%
ACTCTCATGTTAAGTTCATT+AGG	-	Chr4:29003181-29003200	MsG0480019889.01.T01:intron	30.0%
AGAAGATTGCAAAAAGTTGT+GGG	-	Chr4:29004268-29004287	MsG0480019889.01.T01:intron	30.0%
AGAGACATTCTATAAGATTG+TGG	+	Chr4:29003227-29003246	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	29002615	29011452	29002615	ID=MsG0480019889.01;Name=MsG0480019889.01
Chr4	mRNA	29002615	29011452	29002615	ID=MsG0480019889.01.T01;Parent=MsG0480019889.01;Name=MsG0480019889.01.T01;_AED=0.49;_eAED=0.53;_QI=0\|0.28\|0.37\|0.62\|0.71\|0.75\|8\|312\|441
Chr4	exon	29002615	29003052	29002615	ID=MsG0480019889.01.T01:exon:9598;Parent=MsG0480019889.01.T01
Chr4	exon	29006256	29006308	29006256	ID=MsG0480019889.01.T01:exon:9597;Parent=MsG0480019889.01.T01
Chr4	exon	29006390	29006491	29006390	ID=MsG0480019889.01.T01:exon:9596;Parent=MsG0480019889.01.T01
Chr4	exon	29007784	29007842	29007784	ID=MsG0480019889.01.T01:exon:9595;Parent=MsG0480019889.01.T01
Chr4	exon	29008775	29009090	29008775	ID=MsG0480019889.01.T01:exon:9594;Parent=MsG0480019889.01.T01
Chr4	exon	29009149	29009507	29009149	ID=MsG0480019889.01.T01:exon:9593;Parent=MsG0480019889.01.T01
Chr4	exon	29011059	29011151	29011059	ID=MsG0480019889.01.T01:exon:9592;Parent=MsG0480019889.01.T01
Chr4	exon	29011235	29011452	29011235	ID=MsG0480019889.01.T01:exon:9591;Parent=MsG0480019889.01.T01
Chr4	CDS	29011235	29011452	29011235	ID=MsG0480019889.01.T01:cds;Parent=MsG0480019889.01.T01
Chr4	CDS	29011059	29011151	29011059	ID=MsG0480019889.01.T01:cds;Parent=MsG0480019889.01.T01
Chr4	CDS	29009149	29009507	29009149	ID=MsG0480019889.01.T01:cds;Parent=MsG0480019889.01.T01
Chr4	CDS	29008775	29009090	29008775	ID=MsG0480019889.01.T01:cds;Parent=MsG0480019889.01.T01
Chr4	CDS	29007784	29007842	29007784	ID=MsG0480019889.01.T01:cds;Parent=MsG0480019889.01.T01
Chr4	CDS	29006390	29006491	29006390	ID=MsG0480019889.01.T01:cds;Parent=MsG0480019889.01.T01
Chr4	CDS	29006256	29006308	29006256	ID=MsG0480019889.01.T01:cds;Parent=MsG0480019889.01.T01
Chr4	CDS	29002927	29003052	29002927	ID=MsG0480019889.01.T01:cds;Parent=MsG0480019889.01.T01
Chr4	three_prime_UTR	29002615	29002926	29002615	ID=MsG0480019889.01.T01:three_prime_utr;Parent=MsG0480019889.01.T01

Gene Sequence

>MsG0480019889.01.T01

ATGCGACAACGCAACAACTCACCTTCCAATAGCATCCGCAACATGGCAGGAGGTATAGCTAGAATGAGAAGAAGAAGGAGGTTGTTGGTTGGTGACTGGAGATGGTCGATCATGCGGCTCAGATCGGTGACGAAGATGGTTCGATCGCGACAAAGGAATGCATCTCAGTTTGTTGGAGATGGTTCAGGTTGTGCGATGGATATGTTTTTGCTTTCTAGTTCACTTCAAAACGCTTATGCACCAATTCGGTTTAATATTGGTTCGGTTCAGTTTAGCAGTTCGGTTCGGTTTAACACTTTAATATTGGTTCGGGATGAGTTTTTGCTCACATCAGACAGCTCATTCCGAGGAAGCCTTATGAAGATTATGATTGGGAGGACCCGTATGTGGGTAGATGGAAACCTTCTAGCTGATGTTAGACACTTCAGACTCGGGATGGAATCGATGGAGCATTCTCATGTCATTTGGAGGTCGTACGAGCACCGACGAGACGTGACACCTTTTCAGGACGTATGCTGGTACTCCGGATGGATCATGGCCGGCAAAGCTAGGATGGTGTATCACTTGCCCGGAGCGGGTTCTAAGGCAGTCGGCTATGTTCAGACCATTCCTAGACCTCCTACTATGATTGAGCCTCTTGAGCTAGCAGAGGTGGTATTGCCTTCTTGGAGAGTGGATGCATTCAGTGAGGTAGATGAATGGTTCTACCGTGTATGCCATCCTCTTATGATCGGCCCTGCTCCCGTTCCTAAGTACACAGTTCCCAACCTGTCTACGAAGAGGTTATTGTTGAGCAGCAGCGGGCCAGACATCCTCCGACCCATCCAGGTCATCGGCAACATCAGAGTCAGAGTGGAGAATGCAATGTGGATTCCTGATGTGGTTTTAAATCGACTCTTTTTCGGCATTTTGGAGGACATCCGGTCCAATTATACCGTGTTTGAGGAGGTGCTGGCTCCACGGAGGAGGAGTAGGGGTCCAGGGGAGTTATATAATAGGAAGATATTTGTGTTTATTTATACTTCATTGTTAGCTGAGTTTACTAAAGCAAAAAGAATGACGCAGAAATCAAAACTTTTCAAGGGCCAAACTAAGAAGAAATCGATTCCTGCTAATCGTCATGGCAAAGTACCTCAAACTCGCAAAGGGAAGAGATTTGTGAAGCCAACGAAAGTTACAAAGGATATGGATGCTGATCGTGAGGTGAGCAAATTCATTAACCATTGCAATGAAGTTAAAGCAGCGACTGTAGCTACAAAGGACGGTGGTTATCTAAGCATTGTTAGACAGCACCAGAGTCTGCAAGTGGTGCAGAAAAATAGTTAG

Protein sequence

>MsG0480019889.01.T01

MRQRNNSPSNSIRNMAGGIARMRRRRRLLVGDWRWSIMRLRSVTKMVRSRQRNASQFVGDGSGCAMDMFLLSSSLQNAYAPIRFNIGSVQFSSSVRFNTLILVRDEFLLTSDSSFRGSLMKIMIGRTRMWVDGNLLADVRHFRLGMESMEHSHVIWRSYEHRRDVTPFQDVCWYSGWIMAGKARMVYHLPGAGSKAVGYVQTIPRPPTMIEPLELAEVVLPSWRVDAFSEVDEWFYRVCHPLMIGPAPVPKYTVPNLSTKRLLLSSSGPDILRPIQVIGNIRVRVENAMWIPDVVLNRLFFGILEDIRSNYTVFEEVLAPRRRSRGPGELYNRKIFVFIYTSLLAEFTKAKRMTQKSKLFKGQTKKKSIPANRHGKVPQTRKGKRFVKPTKVTKDMDADREVSKFINHCNEVKAATVATKDGGYLSIVRQHQSLQVVQKNS*