AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000799.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000799.01.T01 MTR_1g008200 96.970 297 7 2 1 297 1 295 0.0 582
MsG0180000799.01.T01 MTR_1g008195 84.848 297 38 2 1 297 1 290 1.34e-159 446
MsG0180000799.01.T01 MTR_1g008170 80.602 299 45 3 1 296 1 289 2.45e-153 430
MsG0180000799.01.T01 MTR_6g065550 74.603 126 21 2 10 135 50 164 5.59e-37 130
MsG0180000799.01.T01 MTR_3g463620 30.097 103 71 1 140 242 49 150 1.08e-14 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000799.01.T01 AT5G53400 59.582 287 100 2 26 297 19 304 5.02e-116 336
MsG0180000799.01.T01 AT4G27890 56.066 305 114 6 1 297 1 293 9.32e-109 317
MsG0180000799.01.T01 AT5G58740 25.949 158 81 3 140 297 21 142 9.31e-14 68.2

Find 99 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTCATGATTTCCTGTTTC+TGG 0.058297 1:+11340680 None:intergenic
ACAGTTTGGGGTGTCTAAAT+TGG 0.188690 1:-11340361 MsG0180000799.01.T01:three_prime_UTR
TTATATATTTGAACATATTT+TGG 0.220188 1:-11340300 MsG0180000799.01.T01:three_prime_UTR
TAAAAGCTTACATCAATAAT+TGG 0.250303 1:+11341610 None:intergenic
CAACCATTCATGTTTATGTT+TGG 0.295885 1:-11340400 MsG0180000799.01.T01:three_prime_UTR
CTCTCTTGAACTTTCTCTAA+TGG 0.315405 1:-11343272 MsG0180000799.01.T01:exon
AAGAGGTTTGGGTTTCTTCT+TGG 0.317575 1:+11343233 None:intergenic
TGATCAGAGGCAGAAGTCTA+TGG 0.321181 1:-11340725 MsG0180000799.01.T01:CDS
AGAAAGCTGCGCTATGATTC+GGG 0.325747 1:-11340503 MsG0180000799.01.T01:three_prime_UTR
TACACTCCCAAACAACAGTT+TGG 0.329221 1:-11340375 MsG0180000799.01.T01:three_prime_UTR
AGAAGAAGATGAAGAGGTTT+GGG 0.330750 1:+11343222 None:intergenic
GAGAAGAAGATGAAGAGGTT+TGG 0.337011 1:+11343221 None:intergenic
AGACACCCCAAACTGTTGTT+TGG 0.354071 1:+11340368 None:intergenic
TTCTGGAGCTCCTCACTTGT+TGG 0.356328 1:+11340697 None:intergenic
TTGGGTTTCTTCTTGGTAAT+CGG 0.361888 1:+11343240 None:intergenic
TCAAGCCTGATGAATGTTAC+TGG 0.367377 1:-11341401 MsG0180000799.01.T01:CDS
ATCCATACCATTACCCTGAT+TGG 0.375160 1:+11341768 None:intergenic
AGCAGCAATCTTAGCTTTCT+CGG 0.384597 1:+11343009 None:intergenic
CGAATCATTGTCGAAGAAAT+CGG 0.389616 1:+11343096 None:intergenic
GACACCCCAAACTGTTGTTT+GGG 0.392691 1:+11340369 None:intergenic
AAACATAAACATGAATGGTT+GGG 0.395039 1:+11340402 None:intergenic
TTGATGGACAGTTCCCAATC+AGG 0.395904 1:-11341782 MsG0180000799.01.T01:intron
TAGAAAGCTGCGCTATGATT+CGG 0.396170 1:-11340504 MsG0180000799.01.T01:three_prime_UTR
TCAACAGTCTGTCGAGTCTC+AGG 0.400798 1:+11341060 None:intergenic
TCACCAAGTTTGCTGCTCTC+AGG 0.401717 1:+11341090 None:intergenic
ACACTCCCAAACAACAGTTT+GGG 0.405028 1:-11340374 MsG0180000799.01.T01:three_prime_UTR
CAGTTTGGGGTGTCTAAATT+GGG 0.407050 1:-11340360 MsG0180000799.01.T01:three_prime_UTR
AGAAAAGCGGTTGGATTTGA+AGG 0.414688 1:+11343154 None:intergenic
TGGATCTGGAGAAATATTCT+TGG 0.418168 1:-11341750 MsG0180000799.01.T01:CDS
CATGAAGAAATTTATGAGTC+AGG 0.419859 1:-11340665 MsG0180000799.01.T01:intron
GATGGAGAAAGTGGCTTAGC+AGG 0.426627 1:-11342893 MsG0180000799.01.T01:intron
TTTAACCAAGCATGATCAAA+TGG 0.428418 1:-11341169 MsG0180000799.01.T01:CDS
GAGAAGAAGGATGGAGAAAG+TGG 0.429003 1:-11342902 MsG0180000799.01.T01:CDS
AAGTGAGGAGCTCCAGAAAC+AGG 0.431963 1:-11340692 MsG0180000799.01.T01:CDS
CATCTAAAAGTTGGAATCAA+AGG 0.443557 1:-11341640 MsG0180000799.01.T01:CDS
GAACCTGAGAGCAGCAAACT+TGG 0.444776 1:-11341093 MsG0180000799.01.T01:CDS
CCAGTCCATTTGATCATGCT+TGG 0.448786 1:+11341164 None:intergenic
AAGAAGAACCATCTAAAAGT+TGG 0.449134 1:-11341649 MsG0180000799.01.T01:CDS
TGAGAAGGAAGATGAGAAGA+AGG 0.450742 1:-11342915 MsG0180000799.01.T01:CDS
CGATTTCTTCGACAATGATT+CGG 0.451771 1:-11343095 MsG0180000799.01.T01:CDS
AGCTATGGAGGTAGATGAGA+AGG 0.453896 1:-11342930 MsG0180000799.01.T01:CDS
TCAGGGTAATGGTATGGATC+TGG 0.458750 1:-11341764 MsG0180000799.01.T01:CDS
GGCGGCTGCTGTTGCTGCGG+CGG 0.461162 1:-11342960 MsG0180000799.01.T01:CDS
AAGGAAGATGAGAAGAAGGA+TGG 0.482846 1:-11342911 MsG0180000799.01.T01:CDS
AAGGTGGAAGAGAACGGAAT+AGG 0.487694 1:+11343181 None:intergenic
TCCATACCATTACCCTGATT+GGG 0.488514 1:+11341769 None:intergenic
ATGCTCCAGTAACATTCATC+AGG 0.490196 1:+11341396 None:intergenic
TAAACCAGAGTTTGATTCGA+TGG 0.492391 1:+11340232 None:intergenic
CGACAATGATTCGGCTGAGA+AGG 0.493721 1:-11343086 MsG0180000799.01.T01:CDS
AAACCAGAGTTTGATTCGAT+GGG 0.498271 1:+11340233 None:intergenic
TGTTTGAGAAGAAGATGAAG+AGG 0.500343 1:+11343216 None:intergenic
CAAACATAAACATGAATGGT+TGG 0.500868 1:+11340401 None:intergenic
ATCTAAAAGTTGGAATCAAA+GGG 0.502699 1:-11341639 MsG0180000799.01.T01:CDS
GGAGCTCCTCACTTGTTGGA+AGG 0.509413 1:+11340701 None:intergenic
TGGTGGAAATGTCTTGTTAA+GGG 0.518276 1:-11341144 MsG0180000799.01.T01:CDS
TCCCAATCAGGGTAATGGTA+TGG 0.518546 1:-11341770 MsG0180000799.01.T01:CDS
GCATTCGAGAAGTCCATCTC+CGG 0.524232 1:+11340537 None:intergenic
AGAGAAGGCGAAGGTTGATA+AGG 0.527997 1:-11342984 MsG0180000799.01.T01:CDS
TGTATTGCAGCATCCGGAGA+TGG 0.529847 1:-11340550 MsG0180000799.01.T01:intron
TCTGTCGAGTCTCAGGATCC+AGG 0.530996 1:+11341067 None:intergenic
TTATATCATGGTTTAAGTAA+CGG 0.532998 1:-11340273 MsG0180000799.01.T01:three_prime_UTR
AATCCAAACATAAACATGAA+TGG 0.536791 1:+11340397 None:intergenic
ATCCGCCGTTCGCGCTGTGA+AGG 0.537892 1:-11343056 MsG0180000799.01.T01:CDS
GTGAATGTTCCAGTGCCAAA+TGG 0.540930 1:-11341703 MsG0180000799.01.T01:CDS
TTCCCCATCGAATCAAACTC+TGG 0.541453 1:-11340236 MsG0180000799.01.T01:three_prime_UTR
TGATGGACAGTTCCCAATCA+GGG 0.541528 1:-11341781 MsG0180000799.01.T01:intron
TGCCAAATGGAACAAAATCA+AGG 0.549463 1:-11341690 MsG0180000799.01.T01:CDS
GAGCAGCAAACTTGGTGACC+TGG 0.549952 1:-11341085 MsG0180000799.01.T01:CDS
AACATAAACATGAATGGTTG+GGG 0.550301 1:+11340403 None:intergenic
AAGCTTACATCAATAATTGG+TGG 0.551582 1:+11341613 None:intergenic
ACAGTTCCCAATCAGGGTAA+TGG 0.556894 1:-11341775 MsG0180000799.01.T01:intron
GATCAGAGGCAGAAGTCTAT+GGG 0.558052 1:-11340724 MsG0180000799.01.T01:CDS
GATGAATGTTACTGGAGCAT+AGG 0.561295 1:-11341393 MsG0180000799.01.T01:intron
CAATGATTCGGCTGAGAAGG+TGG 0.562539 1:-11343083 MsG0180000799.01.T01:CDS
CTGGTGGAAATGTCTTGTTA+AGG 0.563095 1:-11341145 MsG0180000799.01.T01:CDS
TAAGATTGCTGCTGAAGAGA+AGG 0.565303 1:-11342999 MsG0180000799.01.T01:CDS
GGCGGCGGCTGCTGTTGCTG+CGG 0.565880 1:-11342963 MsG0180000799.01.T01:CDS
TGTATTCGACTTCATCGCTA+AGG 0.567639 1:-11343125 MsG0180000799.01.T01:CDS
ACAGACTGTTGAAAAGATGA+TGG 0.576647 1:-11341049 MsG0180000799.01.T01:intron
AGCATGATCAAATGGACTGG+TGG 0.576780 1:-11341161 MsG0180000799.01.T01:CDS
TGGATTTGAAGGATCGAAGG+TGG 0.582135 1:+11343165 None:intergenic
TACTCTAAAGATTACCCCAA+AGG 0.588595 1:+11340448 None:intergenic
CCAAGCATGATCAAATGGAC+TGG 0.599013 1:-11341164 MsG0180000799.01.T01:CDS
GGCGAAGGTTGATAAGGCGG+CGG 0.599571 1:-11342978 MsG0180000799.01.T01:CDS
GGATCGAAGGTGGAAGAGAA+CGG 0.602076 1:+11343175 None:intergenic
GAAAGCTGCGCTATGATTCG+GGG 0.610589 1:-11340502 MsG0180000799.01.T01:three_prime_UTR
GGTTGGATTTGAAGGATCGA+AGG 0.613022 1:+11343162 None:intergenic
TACCTTCACAGCGCGAACGG+CGG 0.622007 1:+11343054 None:intergenic
CTTAGCTTTCTCGGCAGCAA+CGG 0.624150 1:+11343018 None:intergenic
CTTTACCTTCACAGCGCGAA+CGG 0.628341 1:+11343051 None:intergenic
TGCTGCTGAAGAGAAGGCGA+AGG 0.633806 1:-11342993 MsG0180000799.01.T01:CDS
AAAGCTGCGCTATGATTCGG+GGG 0.637438 1:-11340501 MsG0180000799.01.T01:three_prime_UTR
CACTCCCAAACAACAGTTTG+GGG 0.650363 1:-11340373 MsG0180000799.01.T01:three_prime_UTR
AACCAGAGTTTGATTCGATG+GGG 0.651671 1:+11340234 None:intergenic
TGTGAAGGTAAAGAAAGCTA+AGG 0.656073 1:-11343041 MsG0180000799.01.T01:CDS
GAAGGCGAAGGTTGATAAGG+CGG 0.663476 1:-11342981 MsG0180000799.01.T01:CDS
TGCGGCGGAGAAGAAAGCTA+TGG 0.665095 1:-11342945 MsG0180000799.01.T01:CDS
TATGGGCCTTCCAACAAGTG+AGG 0.673276 1:-11340707 MsG0180000799.01.T01:CDS
GGCGGAGAAGAAAGCTATGG+AGG 0.684045 1:-11342942 MsG0180000799.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGAAATAAAAAAAAACTA+GGG + Chr1:11340723-11340742 None:intergenic 10.0%
!! TAAAGAAATAAAAAAAAACT+AGG + Chr1:11340724-11340743 None:intergenic 10.0%
!!! CTTTACTTTATTTAAAATAT+TGG - Chr1:11340739-11340758 MsG0180000799.01.T01:intron 10.0%
!!! TTATATATTTGAACATATTT+TGG - Chr1:11343253-11343272 MsG0180000799.01.T01:CDS 10.0%
!! AAAAAATTCAGATATATAGT+TGG + Chr1:11341716-11341735 None:intergenic 15.0%
!! ATTGTAAATTATCAAAATGA+TGG - Chr1:11341590-11341609 MsG0180000799.01.T01:intron 15.0%
!! TTGATTGTTTATTAAATCTA+TGG - Chr1:11341126-11341145 MsG0180000799.01.T01:CDS 15.0%
!!! AAAATATTTTGAAATACCTT+TGG - Chr1:11343089-11343108 MsG0180000799.01.T01:CDS 15.0%
!!! AAATATTTTGAAATACCTTT+GGG - Chr1:11343090-11343109 MsG0180000799.01.T01:CDS 15.0%
!!! ATTATTTTAAAATTTCTCAG+GGG - Chr1:11342113-11342132 MsG0180000799.01.T01:intron 15.0%
!!! CATTATTTTAAAATTTCTCA+GGG - Chr1:11342112-11342131 MsG0180000799.01.T01:intron 15.0%
!!! TCATTATTTTAAAATTTCTC+AGG - Chr1:11342111-11342130 MsG0180000799.01.T01:intron 15.0%
!!! TTTTAAACTTGTGAAAATTT+TGG - Chr1:11342263-11342282 MsG0180000799.01.T01:intron 15.0%
!! GAAATTTATGAGATAACAAT+GGG - Chr1:11340810-11340829 MsG0180000799.01.T01:intron 20.0%
!! TAAAAGCTTACATCAATAAT+TGG + Chr1:11341946-11341965 None:intergenic 20.0%
!! TGAAATTTATGAGATAACAA+TGG - Chr1:11340809-11340828 MsG0180000799.01.T01:intron 20.0%
!! TTAAAATAATGAATCAGCAA+AGG + Chr1:11342103-11342122 None:intergenic 20.0%
!! TTATATCATGGTTTAAGTAA+CGG - Chr1:11343280-11343299 MsG0180000799.01.T01:five_prime_UTR 20.0%
!! TTTAACTATTCATTAGCTAA+TGG - Chr1:11341663-11341682 MsG0180000799.01.T01:CDS 20.0%
!!! AAATTATCAAAATGATGGAA+TGG - Chr1:11341595-11341614 MsG0180000799.01.T01:intron 20.0%
!!! AATATTTTGAAATACCTTTG+GGG - Chr1:11343091-11343110 MsG0180000799.01.T01:CDS 20.0%
!!! AGATTTAAATAACACTGTTT+TGG - Chr1:11342748-11342767 MsG0180000799.01.T01:intron 20.0%
!!! TACTTAATATAACTTGCATT+TGG - Chr1:11342561-11342580 MsG0180000799.01.T01:intron 20.0%
!!! TATGTATCTATTCTTTTGTT+GGG - Chr1:11342632-11342651 MsG0180000799.01.T01:intron 20.0%
!!! TATTTTGGAGTTTTATATCA+TGG - Chr1:11343268-11343287 MsG0180000799.01.T01:exon 20.0%
!!! TGTATGATATTTTATTGCTA+TGG - Chr1:11340886-11340905 MsG0180000799.01.T01:intron 20.0%
!!! TTATTTTAAAATTTCTCAGG+GGG - Chr1:11342114-11342133 MsG0180000799.01.T01:intron 20.0%
! AAACATAAACATGAATGGTT+GGG + Chr1:11343154-11343173 None:intergenic 25.0%
! AATCCAAACATAAACATGAA+TGG + Chr1:11343159-11343178 None:intergenic 25.0%
! AGAAGCAATACAAAAATCAA+AGG + Chr1:11342918-11342937 None:intergenic 25.0%
! ATAATCGAATAGAGATAACT+TGG - Chr1:11342693-11342712 MsG0180000799.01.T01:intron 25.0%
! ATAATTCATTAGGATCATGA+TGG - Chr1:11342231-11342250 MsG0180000799.01.T01:intron 25.0%
! ATCATGATCCTAATGAATTA+TGG + Chr1:11342232-11342251 None:intergenic 25.0%
! ATCTAAAAGTTGGAATCAAA+GGG - Chr1:11341914-11341933 MsG0180000799.01.T01:intron 25.0%
! ATCTATATCACAAAGACTTT+CGG - Chr1:11341359-11341378 MsG0180000799.01.T01:intron 25.0%
! CAAACTGTTAAAAGAATACA+GGG + Chr1:11342810-11342829 None:intergenic 25.0%
! GAATTATGGTCACTTAAAAA+GGG + Chr1:11342218-11342237 None:intergenic 25.0%
! GTTTCTATTACCAAAAAATG+TGG + Chr1:11341325-11341344 None:intergenic 25.0%
! TAAATATGCCAAAATTGCTA+GGG - Chr1:11340990-11341009 MsG0180000799.01.T01:intron 25.0%
! TAGATGATAAACCAATGATA+AGG - Chr1:11341172-11341191 MsG0180000799.01.T01:CDS 25.0%
! TCAAACAAACTAAAAATTCC+AGG + Chr1:11342067-11342086 None:intergenic 25.0%
! TCAAACTGTTAAAAGAATAC+AGG + Chr1:11342811-11342830 None:intergenic 25.0%
! TGAATTATGGTCACTTAAAA+AGG + Chr1:11342219-11342238 None:intergenic 25.0%
! TTAAATATGCCAAAATTGCT+AGG - Chr1:11340989-11341008 MsG0180000799.01.T01:intron 25.0%
! TTAAGTGACCATAATTCATT+AGG - Chr1:11342221-11342240 MsG0180000799.01.T01:intron 25.0%
!! GTATGTATCTATTCTTTTGT+TGG - Chr1:11342631-11342650 MsG0180000799.01.T01:intron 25.0%
!!! TATGCATATACCACATTTTT+TGG - Chr1:11341312-11341331 MsG0180000799.01.T01:intron 25.0%
!!! TTTAAAACCTATTTTTGCAG+AGG - Chr1:11342339-11342358 MsG0180000799.01.T01:intron 25.0%
AAAATGTGGTATATGCATAG+TGG + Chr1:11341311-11341330 None:intergenic 30.0%
AAACACAATCAAATCAGAGA+GGG + Chr1:11341546-11341565 None:intergenic 30.0%
AAATATGCCAAAATTGCTAG+GGG - Chr1:11340991-11341010 MsG0180000799.01.T01:intron 30.0%
AACATAAACATGAATGGTTG+GGG + Chr1:11343153-11343172 None:intergenic 30.0%
AAGAAGAACCATCTAAAAGT+TGG - Chr1:11341904-11341923 MsG0180000799.01.T01:intron 30.0%
AAGCTTACATCAATAATTGG+TGG + Chr1:11341943-11341962 None:intergenic 30.0%
CAAACATAAACATGAATGGT+TGG + Chr1:11343155-11343174 None:intergenic 30.0%
CAAATTTACTAGATCGACAA+AGG + Chr1:11342965-11342984 None:intergenic 30.0%
CAACCATTCATGTTTATGTT+TGG - Chr1:11343153-11343172 MsG0180000799.01.T01:CDS 30.0%
CATCTAAAAGTTGGAATCAA+AGG - Chr1:11341913-11341932 MsG0180000799.01.T01:intron 30.0%
CATGAAGAAATTTATGAGTC+AGG - Chr1:11342888-11342907 MsG0180000799.01.T01:intron 30.0%
GAAAGTCTTTGTGATATAGA+TGG + Chr1:11341360-11341379 None:intergenic 30.0%
GATACATACTTAAATGCAAC+AGG + Chr1:11342620-11342639 None:intergenic 30.0%
GATGAAATGACAATAATCAC+CGG + Chr1:11341048-11341067 None:intergenic 30.0%
TTTAACCAAGCATGATCAAA+TGG - Chr1:11342384-11342403 MsG0180000799.01.T01:intron 30.0%
! AACCTTGATTTTGTTCCATT+TGG + Chr1:11341868-11341887 None:intergenic 30.0%
! AAGATGACATTCTAGTTGAA+TGG - Chr1:11342667-11342686 MsG0180000799.01.T01:intron 30.0%
! ACACTCCATGCTTAAAATTT+TGG + Chr1:11341234-11341253 None:intergenic 30.0%
! ATTTTATGTATTGCAGCATC+CGG - Chr1:11342997-11343016 MsG0180000799.01.T01:CDS 30.0%
! CACTCCATGCTTAAAATTTT+GGG + Chr1:11341233-11341252 None:intergenic 30.0%
! CTTTGATTCCAACTTTTAGA+TGG + Chr1:11341915-11341934 None:intergenic 30.0%
! TACATCTTTGCTCTTTTTGA+TGG - Chr1:11341755-11341774 MsG0180000799.01.T01:CDS 30.0%
! TCTACCCAAAATTTTAAGCA+TGG - Chr1:11341226-11341245 MsG0180000799.01.T01:intron 30.0%
! TCTTTTAACAGTTTGATCAG+AGG - Chr1:11342815-11342834 MsG0180000799.01.T01:intron 30.0%
! TTTGCTATGAACATTGTGTT+GGG - Chr1:11340780-11340799 MsG0180000799.01.T01:intron 30.0%
! TTTGTGATATAGATGGACTT+AGG + Chr1:11341353-11341372 None:intergenic 30.0%
!! ATAACACTGTTTTGGATTTG+AGG - Chr1:11342756-11342775 MsG0180000799.01.T01:intron 30.0%
!! GAATACATTTTCGAGAAAAG+CGG + Chr1:11340415-11340434 None:intergenic 30.0%
!! GCAATTTTGGCATATTTAAC+CGG + Chr1:11340988-11341007 None:intergenic 30.0%
!! GTTTTGTTCACAAACATGTT+TGG - Chr1:11343215-11343234 MsG0180000799.01.T01:CDS 30.0%
!!! ACTTTTTGGGTGTTAATTTC+AGG + Chr1:11342439-11342458 None:intergenic 30.0%
!!! TTAGAGTACTTGTTTTGACT+TGG - Chr1:11343120-11343139 MsG0180000799.01.T01:CDS 30.0%
ACAGACTGTTGAAAAGATGA+TGG - Chr1:11342504-11342523 MsG0180000799.01.T01:intron 35.0%
AGAAGAAGATGAAGAGGTTT+GGG + Chr1:11340334-11340353 None:intergenic 35.0%
AGAGTCTTCTGATTGTAACT+AGG - Chr1:11342289-11342308 MsG0180000799.01.T01:intron 35.0%
ATAACACAAACAAGTGTCAC+TGG + Chr1:11342006-11342025 None:intergenic 35.0%
CAAACACAATCAAATCAGAG+AGG + Chr1:11341547-11341566 None:intergenic 35.0%
CAACAGTAACTGCTATAACT+TGG + Chr1:11341969-11341988 None:intergenic 35.0%
CGAATCATTGTCGAAGAAAT+CGG + Chr1:11340460-11340479 None:intergenic 35.0%
CGATTTCTTCGACAATGATT+CGG - Chr1:11340458-11340477 MsG0180000799.01.T01:three_prime_UTR 35.0%
CTCTCTTGAACTTTCTCTAA+TGG - Chr1:11340281-11340300 MsG0180000799.01.T01:three_prime_UTR 35.0%
TCTTCATGATTTCCTGTTTC+TGG + Chr1:11342876-11342895 None:intergenic 35.0%
TGCCAAATGGAACAAAATCA+AGG - Chr1:11341863-11341882 MsG0180000799.01.T01:intron 35.0%
TGGATCTGGAGAAATATTCT+TGG - Chr1:11341803-11341822 MsG0180000799.01.T01:intron 35.0%
TGTGAAGGTAAAGAAAGCTA+AGG - Chr1:11340512-11340531 MsG0180000799.01.T01:exon 35.0%
TGTTTGAGAAGAAGATGAAG+AGG + Chr1:11340340-11340359 None:intergenic 35.0%
! AAACCAGAGTTTGATTCGAT+GGG + Chr1:11343323-11343342 None:intergenic 35.0%
! CTCTCTGATTTGATTGTGTT+TGG - Chr1:11341545-11341564 MsG0180000799.01.T01:intron 35.0%
! GTTTAAACCCCTAGCAATTT+TGG + Chr1:11341001-11341020 None:intergenic 35.0%
! TAAACCAGAGTTTGATTCGA+TGG + Chr1:11343324-11343343 None:intergenic 35.0%
! TACTCTAAAGATTACCCCAA+AGG + Chr1:11343108-11343127 None:intergenic 35.0%
! TGGTGGAAATGTCTTGTTAA+GGG - Chr1:11342409-11342428 MsG0180000799.01.T01:intron 35.0%
! TTGGGTTTCTTCTTGGTAAT+CGG + Chr1:11340316-11340335 None:intergenic 35.0%
!! GTTTGCTATGAACATTGTGT+TGG - Chr1:11340779-11340798 MsG0180000799.01.T01:intron 35.0%
AAGGAAGATGAGAAGAAGGA+TGG - Chr1:11340642-11340661 MsG0180000799.01.T01:intron 40.0%
AATTCCAGGCTAAAGACAGA+AGG + Chr1:11342053-11342072 None:intergenic 40.0%
ACACTCCCAAACAACAGTTT+GGG - Chr1:11343179-11343198 MsG0180000799.01.T01:CDS 40.0%
AGAAAAGCGGTTGGATTTGA+AGG + Chr1:11340402-11340421 None:intergenic 40.0%
ATCCATACCATTACCCTGAT+TGG + Chr1:11341788-11341807 None:intergenic 40.0%
ATCCATAGTTTGGACTGACA+GGG + Chr1:11341419-11341438 None:intergenic 40.0%
ATGCTCCAGTAACATTCATC+AGG + Chr1:11342160-11342179 None:intergenic 40.0%
ATGGATCTGGTACCATATCT+TGG - Chr1:11341433-11341452 MsG0180000799.01.T01:intron 40.0%
ATGGTACCAGATCCATAGTT+TGG + Chr1:11341429-11341448 None:intergenic 40.0%
CGTCGCTTCTTGCATTTAAA+TGG + Chr1:11341488-11341507 None:intergenic 40.0%
CTCTGATCCTCTGCAAAAAT+AGG + Chr1:11342349-11342368 None:intergenic 40.0%
GAGAAGAAGATGAAGAGGTT+TGG + Chr1:11340335-11340354 None:intergenic 40.0%
GATGAATGTTACTGGAGCAT+AGG - Chr1:11342160-11342179 MsG0180000799.01.T01:intron 40.0%
GCAACATTAAACCAACTACC+GGG + Chr1:11342788-11342807 None:intergenic 40.0%
GGCAACATTAAACCAACTAC+CGG + Chr1:11342789-11342808 None:intergenic 40.0%
TAACGCGATCTCTTGATTCA+CGG + Chr1:11341199-11341218 None:intergenic 40.0%
TAAGATTGCTGCTGAAGAGA+AGG - Chr1:11340554-11340573 MsG0180000799.01.T01:intron 40.0%
TACACTCCCAAACAACAGTT+TGG - Chr1:11343178-11343197 MsG0180000799.01.T01:CDS 40.0%
TAGAAAGCTGCGCTATGATT+CGG - Chr1:11343049-11343068 MsG0180000799.01.T01:CDS 40.0%
TCAAGCCTGATGAATGTTAC+TGG - Chr1:11342152-11342171 MsG0180000799.01.T01:intron 40.0%
TCCATACCATTACCCTGATT+GGG + Chr1:11341787-11341806 None:intergenic 40.0%
TGAGAAGGAAGATGAGAAGA+AGG - Chr1:11340638-11340657 MsG0180000799.01.T01:intron 40.0%
TGATTCACGGTCCTTATCAT+TGG + Chr1:11341186-11341205 None:intergenic 40.0%
TGGATCTGGTACCATATCTT+GGG - Chr1:11341434-11341453 MsG0180000799.01.T01:intron 40.0%
TGTATTCGACTTCATCGCTA+AGG - Chr1:11340428-11340447 MsG0180000799.01.T01:three_prime_UTR 40.0%
TTGGATTTGAGGATTTCTCC+CGG - Chr1:11342767-11342786 MsG0180000799.01.T01:intron 40.0%
! AACCAGAGTTTGATTCGATG+GGG + Chr1:11343322-11343341 None:intergenic 40.0%
! AAGAGGTTTGGGTTTCTTCT+TGG + Chr1:11340323-11340342 None:intergenic 40.0%
! ACAGTTTGGGGTGTCTAAAT+TGG - Chr1:11343192-11343211 MsG0180000799.01.T01:CDS 40.0%
! AGAGAACGGAATAGGTTTTG+AGG + Chr1:11340367-11340386 None:intergenic 40.0%
! AGCAGCAATCTTAGCTTTCT+CGG + Chr1:11340547-11340566 None:intergenic 40.0%
! ATATAGATGGACTTAGGCAG+GGG + Chr1:11341347-11341366 None:intergenic 40.0%
! CAGTTTGGGGTGTCTAAATT+GGG - Chr1:11343193-11343212 MsG0180000799.01.T01:CDS 40.0%
! CTGGTGGAAATGTCTTGTTA+AGG - Chr1:11342408-11342427 MsG0180000799.01.T01:intron 40.0%
! GATATAGATGGACTTAGGCA+GGG + Chr1:11341348-11341367 None:intergenic 40.0%
! GATTTTGTTCCATTTGGCAC+TGG + Chr1:11341862-11341881 None:intergenic 40.0%
! GCTCTCAGGTTCAACTTTTT+GGG + Chr1:11342452-11342471 None:intergenic 40.0%
! TGATATAGATGGACTTAGGC+AGG + Chr1:11341349-11341368 None:intergenic 40.0%
! TGCTCTCAGGTTCAACTTTT+TGG + Chr1:11342453-11342472 None:intergenic 40.0%
!! ACATTTTCGAGAAAAGCGGT+TGG + Chr1:11340411-11340430 None:intergenic 40.0%
!! GAGAACGGAATAGGTTTTGA+GGG + Chr1:11340366-11340385 None:intergenic 40.0%
!! TCCACAATTTCTAGCTCAAC+CGG - Chr1:11340966-11340985 MsG0180000799.01.T01:intron 40.0%
AAGGTGGAAGAGAACGGAAT+AGG + Chr1:11340375-11340394 None:intergenic 45.0%
ACAGTTCCCAATCAGGGTAA+TGG - Chr1:11341778-11341797 MsG0180000799.01.T01:intron 45.0%
ACCATATCTTGGGGGAATTC+AGG - Chr1:11341444-11341463 MsG0180000799.01.T01:intron 45.0%
ACCGGTTGAGCTAGAAATTG+TGG + Chr1:11340970-11340989 None:intergenic 45.0%
AGAAAGCTGCGCTATGATTC+GGG - Chr1:11343050-11343069 MsG0180000799.01.T01:CDS 45.0%
AGACACCCCAAACTGTTGTT+TGG + Chr1:11343188-11343207 None:intergenic 45.0%
AGCTATGGAGGTAGATGAGA+AGG - Chr1:11340623-11340642 MsG0180000799.01.T01:intron 45.0%
CACTCCCAAACAACAGTTTG+GGG - Chr1:11343180-11343199 MsG0180000799.01.T01:CDS 45.0%
CCAAGCATGATCAAATGGAC+TGG - Chr1:11342389-11342408 MsG0180000799.01.T01:intron 45.0%
CCAGTCCATTTGATCATGCT+TGG + Chr1:11342392-11342411 None:intergenic 45.0%
CCATATCTTGGGGGAATTCA+GGG - Chr1:11341445-11341464 MsG0180000799.01.T01:intron 45.0%
GAGAAGAAGGATGGAGAAAG+TGG - Chr1:11340651-11340670 MsG0180000799.01.T01:intron 45.0%
GATCAGAGGCAGAAGTCTAT+GGG - Chr1:11342829-11342848 MsG0180000799.01.T01:intron 45.0%
GATCCATAGTTTGGACTGAC+AGG + Chr1:11341420-11341439 None:intergenic 45.0%
GATCTGGTACCATATCTTGG+GGG - Chr1:11341436-11341455 MsG0180000799.01.T01:intron 45.0%
GGATCTGGTACCATATCTTG+GGG - Chr1:11341435-11341454 MsG0180000799.01.T01:intron 45.0%
GGTTGGATTTGAAGGATCGA+AGG + Chr1:11340394-11340413 None:intergenic 45.0%
GTCAGTCCAAACTATGGATC+TGG - Chr1:11341420-11341439 MsG0180000799.01.T01:CDS 45.0%
GTGAATGTTCCAGTGCCAAA+TGG - Chr1:11341850-11341869 MsG0180000799.01.T01:intron 45.0%
TGATCAGAGGCAGAAGTCTA+TGG - Chr1:11342828-11342847 MsG0180000799.01.T01:intron 45.0%
TGGATTTGAAGGATCGAAGG+TGG + Chr1:11340391-11340410 None:intergenic 45.0%
TTCCCCATCGAATCAAACTC+TGG - Chr1:11343317-11343336 MsG0180000799.01.T01:five_prime_UTR 45.0%
! CACAAACAAGTGTCACTGGA+AGG + Chr1:11342002-11342021 None:intergenic 45.0%
! GACACCCCAAACTGTTGTTT+GGG + Chr1:11343187-11343206 None:intergenic 45.0%
! TCAGGGTAATGGTATGGATC+TGG - Chr1:11341789-11341808 MsG0180000799.01.T01:intron 45.0%
! TCCCAATCAGGGTAATGGTA+TGG - Chr1:11341783-11341802 MsG0180000799.01.T01:intron 45.0%
! TGATGGACAGTTCCCAATCA+GGG - Chr1:11341772-11341791 MsG0180000799.01.T01:CDS 45.0%
! TTGATGGACAGTTCCCAATC+AGG - Chr1:11341771-11341790 MsG0180000799.01.T01:CDS 45.0%
!! AGAGAAGGCGAAGGTTGATA+AGG - Chr1:11340569-11340588 MsG0180000799.01.T01:intron 45.0%
!! AGCATGATCAAATGGACTGG+TGG - Chr1:11342392-11342411 MsG0180000799.01.T01:intron 45.0%
!!! CTATGATTCGGGGGCTTTTT+TGG - Chr1:11343061-11343080 MsG0180000799.01.T01:CDS 45.0%
!!! TTTACTTTATTTAAAATATT+GGG - Chr1:11340740-11340759 MsG0180000799.01.T01:intron 5.0%
AAACCCACACACACGCAAGT+CGG + Chr1:11341025-11341044 None:intergenic 50.0%
AAGTGAGGAGCTCCAGAAAC+AGG - Chr1:11342861-11342880 MsG0180000799.01.T01:intron 50.0%
CCCTGAATTCCCCCAAGATA+TGG + Chr1:11341448-11341467 None:intergenic 50.0%
CGTTCCTTCTGTCTTTAGCC+TGG - Chr1:11342046-11342065 MsG0180000799.01.T01:intron 50.0%
CTCCCTGTCAGTCCAAACTA+TGG - Chr1:11341414-11341433 MsG0180000799.01.T01:CDS 50.0%
CTTTACCTTCACAGCGCGAA+CGG + Chr1:11340505-11340524 None:intergenic 50.0%
GAAAGCTGCGCTATGATTCG+GGG - Chr1:11343051-11343070 MsG0180000799.01.T01:CDS 50.0%
GAACCTGAGAGCAGCAAACT+TGG - Chr1:11342460-11342479 MsG0180000799.01.T01:intron 50.0%
GATGGAGAAAGTGGCTTAGC+AGG - Chr1:11340660-11340679 MsG0180000799.01.T01:intron 50.0%
GCATTCGAGAAGTCCATCTC+CGG + Chr1:11343019-11343038 None:intergenic 50.0%
GGATCGAAGGTGGAAGAGAA+CGG + Chr1:11340381-11340400 None:intergenic 50.0%
TATGGGCCTTCCAACAAGTG+AGG - Chr1:11342846-11342865 MsG0180000799.01.T01:intron 50.0%
TCAACAGTCTGTCGAGTCTC+AGG + Chr1:11342496-11342515 None:intergenic 50.0%
TGAGGATTTCTCCCGGTAGT+TGG - Chr1:11342774-11342793 MsG0180000799.01.T01:intron 50.0%
TGTATTGCAGCATCCGGAGA+TGG - Chr1:11343003-11343022 MsG0180000799.01.T01:CDS 50.0%
! AAAGCTGCGCTATGATTCGG+GGG - Chr1:11343052-11343071 MsG0180000799.01.T01:CDS 50.0%
! CAATGATTCGGCTGAGAAGG+TGG - Chr1:11340470-11340489 MsG0180000799.01.T01:three_prime_UTR 50.0%
! CGACAATGATTCGGCTGAGA+AGG - Chr1:11340467-11340486 MsG0180000799.01.T01:three_prime_UTR 50.0%
! CTTAGCTTTCTCGGCAGCAA+CGG + Chr1:11340538-11340557 None:intergenic 50.0%
!! GAAGGCGAAGGTTGATAAGG+CGG - Chr1:11340572-11340591 MsG0180000799.01.T01:intron 50.0%
!! TCACCAAGTTTGCTGCTCTC+AGG + Chr1:11342466-11342485 None:intergenic 50.0%
!! TTCTGGAGCTCCTCACTTGT+TGG + Chr1:11342859-11342878 None:intergenic 50.0%
AACCCACACACACGCAAGTC+GGG + Chr1:11341024-11341043 None:intergenic 55.0%
CTTGCGTGTGTGTGGGTTTC+CGG - Chr1:11341026-11341045 MsG0180000799.01.T01:intron 55.0%
GGCGGAGAAGAAAGCTATGG+AGG - Chr1:11340611-11340630 MsG0180000799.01.T01:intron 55.0%
TCTGTCGAGTCTCAGGATCC+AGG + Chr1:11342489-11342508 None:intergenic 55.0%
TGCGGCGGAGAAGAAAGCTA+TGG - Chr1:11340608-11340627 MsG0180000799.01.T01:intron 55.0%
TGCTGCTGAAGAGAAGGCGA+AGG - Chr1:11340560-11340579 MsG0180000799.01.T01:intron 55.0%
! GAGCAGCAAACTTGGTGACC+TGG - Chr1:11342468-11342487 MsG0180000799.01.T01:intron 55.0%
! GGAGCTCCTCACTTGTTGGA+AGG + Chr1:11342855-11342874 None:intergenic 55.0%
ACCCACACACACGCAAGTCG+GGG + Chr1:11341023-11341042 None:intergenic 60.0%
TACCTTCACAGCGCGAACGG+CGG + Chr1:11340502-11340521 None:intergenic 60.0%
! AACCCCGACTTGCGTGTGTG+TGG - Chr1:11341018-11341037 MsG0180000799.01.T01:intron 60.0%
! ACCCCGACTTGCGTGTGTGT+GGG - Chr1:11341019-11341038 MsG0180000799.01.T01:intron 60.0%
!! GGCGAAGGTTGATAAGGCGG+CGG - Chr1:11340575-11340594 MsG0180000799.01.T01:intron 60.0%
ATCCGCCGTTCGCGCTGTGA+AGG - Chr1:11340497-11340516 MsG0180000799.01.T01:three_prime_UTR 65.0%
GGCGGCGGCTGCTGTTGCTG+CGG - Chr1:11340590-11340609 MsG0180000799.01.T01:intron 75.0%
GGCGGCTGCTGTTGCTGCGG+CGG - Chr1:11340593-11340612 MsG0180000799.01.T01:intron 75.0%
Chromosome Type Strat End Strand Name
Chr1 gene 11340231 11343344 11340231 ID=MsG0180000799.01;Name=MsG0180000799.01
Chr1 mRNA 11340231 11343344 11340231 ID=MsG0180000799.01.T01;Parent=MsG0180000799.01;Name=MsG0180000799.01.T01;_AED=0.47;_eAED=0.47;_QI=69|1|1|1|1|1|6|293|297
Chr1 exon 11342894 11343344 11342894 ID=MsG0180000799.01.T01:exon:817;Parent=MsG0180000799.01.T01
Chr1 exon 11341621 11341793 11341621 ID=MsG0180000799.01.T01:exon:818;Parent=MsG0180000799.01.T01
Chr1 exon 11341394 11341442 11341394 ID=MsG0180000799.01.T01:exon:819;Parent=MsG0180000799.01.T01
Chr1 exon 11341050 11341216 11341050 ID=MsG0180000799.01.T01:exon:820;Parent=MsG0180000799.01.T01
Chr1 exon 11340666 11340749 11340666 ID=MsG0180000799.01.T01:exon:821;Parent=MsG0180000799.01.T01
Chr1 exon 11340231 11340562 11340231 ID=MsG0180000799.01.T01:exon:822;Parent=MsG0180000799.01.T01
Chr1 five_prime_UTR 11343276 11343344 11343276 ID=MsG0180000799.01.T01:five_prime_utr;Parent=MsG0180000799.01.T01
Chr1 CDS 11342894 11343275 11342894 ID=MsG0180000799.01.T01:cds;Parent=MsG0180000799.01.T01
Chr1 CDS 11341621 11341793 11341621 ID=MsG0180000799.01.T01:cds;Parent=MsG0180000799.01.T01
Chr1 CDS 11341394 11341442 11341394 ID=MsG0180000799.01.T01:cds;Parent=MsG0180000799.01.T01
Chr1 CDS 11341050 11341216 11341050 ID=MsG0180000799.01.T01:cds;Parent=MsG0180000799.01.T01
Chr1 CDS 11340666 11340749 11340666 ID=MsG0180000799.01.T01:cds;Parent=MsG0180000799.01.T01
Chr1 CDS 11340524 11340562 11340524 ID=MsG0180000799.01.T01:cds;Parent=MsG0180000799.01.T01
Chr1 three_prime_UTR 11340231 11340523 11340231 ID=MsG0180000799.01.T01:three_prime_utr;Parent=MsG0180000799.01.T01
Gene Sequence

>MsG0180000799.01.T01

ATGGCGATTATCTCCGATTACCAAGAAGAAACCCAAACCTCTTCATCTTCTTCTCAAACAAAACCCTCAAAACCTATTCCGTTCTCTTCCACCTTCGATCCTTCAAATCCAACCGCTTTTCTCGAAAATGTATTCGACTTCATCGCTAAGGAAAGTACCGATTTCTTCGACAATGATTCGGCTGAGAAGGTGGTTTTATCCGCCGTTCGCGCTGTGAAGGTAAAGAAAGCTAAGGCCGTTGCTGCCGAGAAAGCTAAGATTGCTGCTGAAGAGAAGGCGAAGGTTGATAAGGCGGCGGCTGCTGTTGCTGCGGCGGAGAAGAAAGCTATGGAGGTAGATGAGAAGGAAGATGAGAAGAAGGATGGAGAAAGTGGCTTAGCAGTTCCCAATCAGGGTAATGGTATGGATCTGGAGAAATATTCTTGGACTCAAACTCTTCAAGAGCTCAATGTGAATGTTCCAGTGCCAAATGGAACAAAATCAAGGTTTGTCACATGTGAGATAAAGAAGAACCATCTAAAAGTTGGAATCAAAGGGCAGCCACCAATTATTGATGGGGAGCTGTATAAATCTATCAAGCCTGATGAATGTTACTGGAGCATAGAGGATCAGAGTACACTTTCTATTCTTTTAACCAAGCATGATCAAATGGACTGGTGGAAATGTCTTGTTAAGGGTGATCCTGAAATTAACACCCAAAAAGTTGAACCTGAGAGCAGCAAACTTGGTGACCTGGATCCTGAGACTCGACAGACTGTTGAAAAGATGATGTTTGATCAGAGGCAGAAGTCTATGGGCCTTCCAACAAGTGAGGAGCTCCAGAAACAGGAAATCATGAAGAAATTTATGAGTCAGCATCCGGAGATGGACTTCTCGAATGCAAAATTATCTTAG

Protein sequence

>MsG0180000799.01.T01

MAIISDYQEETQTSSSSSQTKPSKPIPFSSTFDPSNPTAFLENVFDFIAKESTDFFDNDSAEKVVLSAVRAVKVKKAKAVAAEKAKIAAEEKAKVDKAAAAVAAAEKKAMEVDEKEDEKKDGESGLAVPNQGNGMDLEKYSWTQTLQELNVNVPVPNGTKSRFVTCEIKKNHLKVGIKGQPPIIDGELYKSIKPDECYWSIEDQSTLSILLTKHDQMDWWKCLVKGDPEINTQKVEPESSKLGDLDPETRQTVEKMMFDQRQKSMGLPTSEELQKQEIMKKFMSQHPEMDFSNAKLS*