AlfalfaGEDB | MsG0580025408.01

M. sativa cultivar ZhongmuNo.1 / MsG0580025408.01

KEGG: K03039
GO: GO:0005515
PFAM: PF01399

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580025408.01.T01	XP_003612702.1	97.68	388	7	1	1	388	1	386	0	768

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580025408.01.T01	Q8GYA6	82.99	388	64	1	1	388	1	386	0	671

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580025408.01.T01	G7K9K1	97.680	388	7	1	1	388	1	386	0.0	768

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048687.01	MsG0580025408.01	0.816178	6.320766e-52	4.447148e-49
MsG0080049059.01	MsG0580025408.01	0.801446	8.971703e-49	4.285411e-46
MsG0180000135.01	MsG0580025408.01	0.841963	3.453497e-58	5.158350e-55
MsG0180000799.01	MsG0580025408.01	0.836810	7.524390e-57	9.589042e-54
MsG0180001599.01	MsG0580025408.01	0.843186	1.635526e-58	2.538476e-55
MsG0180002489.01	MsG0580025408.01	0.822541	2.241469e-53	1.881765e-50
MsG0180002491.01	MsG0580025408.01	0.848735	5.069954e-60	9.394865e-57
MsG0180003688.01	MsG0580025408.01	0.817054	4.023664e-52	2.899659e-49
MsG0180003744.01	MsG0580025408.01	0.824720	6.926659e-54	6.186198e-51
MsG0180004050.01	MsG0580025408.01	0.831784	1.371380e-55	1.503795e-52

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PPI

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Gene1	Gene2	Type
MsG0580025408.01	MsG0180000235.01	PPI
MsG0580025408.01	MsG0480023412.01	PPI
MsG0580025408.01	MsG0480023410.01	PPI
MsG0580025408.01	MsG0380015444.01	PPI
MsG0580025408.01	MsG0480023412.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580025408.01.T01	MTR_5g027960	97.680	388	7	1	1	388	1	386	0.0	768

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsG0580025408.01.T01	AT4G19006	82.990	388	64	1	1	388	1	386	671
MsG0580025408.01.T01	AT5G45620	82.474	388	66	1	1	388	1	386	667
MsG0580025408.01.T01	AT4G19006	73.016	441	64	2	1	388	1	439	645
MsG0580025408.01.T01	AT5G45620	83.951	324	50	1	1	324	1	322	564

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Find 103 sgRNAs with CRISPR-Local

Find 321 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCAGCAAATTCCTGA+CGG	0.624927	5:-18182472	None:intergenic
AAAACTTTCTATAGAGAATG+TGG	0.554790	5:+18184024	MsG0580025408.01.T01:CDS
AAAATCCTTACGGGATCGAT+TGG	0.484091	5:+18184870	MsG0580025408.01.T01:CDS
AAACTCAGCAAATTCCTGAC+GGG	0.585720	5:-18182471	None:intergenic
AAAGACATACGCAAAAGATT+TGG	0.377240	5:-18185340	None:intergenic
AAAGGAATGCAAGAATCTTC+TGG	0.334571	5:+18182358	MsG0580025408.01.T01:CDS
AACTGATGCAACATGTCTCT+AGG	0.577151	5:-18185183	None:intergenic
AAGATACTTCCGAGTTACAT+GGG	0.632024	5:+18185044	MsG0580025408.01.T01:three_prime_UTR
AAGGTATTGCAGTGCAGCCA+TGG	0.555178	5:-18180453	None:intergenic
ACATAAGAAATTGTTACAAT+TGG	0.369906	5:-18184988	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGACATACGCAAAAGATT+TGG	-	Chr5:18185343-18185362	None:intergenic	30.0%
AATCAGATCAAAAGAGGTAA+AGG	+	Chr5:18181460-18181479	MsG0580025408.01.T01:intron	30.0%
AGATTTAGAGATCAATGAGT+TGG	+	Chr5:18181519-18181538	MsG0580025408.01.T01:intron	30.0%
AGCCAAAATATCTACATCTT+TGG	-	Chr5:18181210-18181229	None:intergenic	30.0%
ATAAGAAACAGGGATATCAA+TGG	-	Chr5:18181980-18181999	None:intergenic	30.0%
ATATAGTAGTTATGCAACAC+AGG	+	Chr5:18182812-18182831	MsG0580025408.01.T01:intron	30.0%
ATGTTATCACCAGAAGAATT+AGG	+	Chr5:18184292-18184311	MsG0580025408.01.T01:intron	30.0%
ATTCACGATCCAATTAAATC+AGG	-	Chr5:18184949-18184968	None:intergenic	30.0%
ATTGGAATTGTGGTAAAGAT+GGG	+	Chr5:18180781-18180800	MsG0580025408.01.T01:intron	30.0%
ATTGTCGAAATCATCACATT+CGG	+	Chr5:18183892-18183911	MsG0580025408.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	18180335	18185391	18180335	ID=MsG0580025408.01;Name=MsG0580025408.01
Chr5	mRNA	18180335	18185391	18180335	ID=MsG0580025408.01.T01;Parent=MsG0580025408.01;Name=MsG0580025408.01.T01;_AED=0.33;_eAED=0.33;_QI=120\|1\|1\|1\|0.8\|1\|6\|425\|388
Chr5	exon	18180335	18180604	18180335	ID=MsG0580025408.01.T01:exon:1959;Parent=MsG0580025408.01.T01
Chr5	exon	18182107	18182559	18182107	ID=MsG0580025408.01.T01:exon:1960;Parent=MsG0580025408.01.T01
Chr5	exon	18183503	18183583	18183503	ID=MsG0580025408.01.T01:exon:1961;Parent=MsG0580025408.01.T01
Chr5	exon	18183676	18183872	18183676	ID=MsG0580025408.01.T01:exon:1962;Parent=MsG0580025408.01.T01
Chr5	exon	18183973	18184072	18183973	ID=MsG0580025408.01.T01:exon:1963;Parent=MsG0580025408.01.T01
Chr5	exon	18184781	18185391	18184781	ID=MsG0580025408.01.T01:exon:1964;Parent=MsG0580025408.01.T01
Chr5	five_prime_UTR	18180335	18180454	18180335	ID=MsG0580025408.01.T01:five_prime_utr;Parent=MsG0580025408.01.T01
Chr5	CDS	18180455	18180604	18180455	ID=MsG0580025408.01.T01:cds;Parent=MsG0580025408.01.T01
Chr5	CDS	18182107	18182559	18182107	ID=MsG0580025408.01.T01:cds;Parent=MsG0580025408.01.T01
Chr5	CDS	18183503	18183583	18183503	ID=MsG0580025408.01.T01:cds;Parent=MsG0580025408.01.T01
Chr5	CDS	18183676	18183872	18183676	ID=MsG0580025408.01.T01:cds;Parent=MsG0580025408.01.T01
Chr5	CDS	18183973	18184072	18183973	ID=MsG0580025408.01.T01:cds;Parent=MsG0580025408.01.T01
Chr5	CDS	18184781	18184966	18184781	ID=MsG0580025408.01.T01:cds;Parent=MsG0580025408.01.T01
Chr5	three_prime_UTR	18184967	18185391	18184967	ID=MsG0580025408.01.T01:three_prime_utr;Parent=MsG0580025408.01.T01

Gene Sequence

>MsG0580025408.01.T01

ATGGCTGCACTGCAATACCTTGAATCGCTTCGAAGTTCTCACCCTGAACTCGGTGAATGGTACAATTCTCTTGCGGATCTGTACCAGAAGAAGTTATGGCATCAGCTCACTCTCAAACTCGAACAGTTTCTTGCTCTTGCCGTTTTTCAGGATCAGGCTGGTGATGCTCTGATACAATTATATAACAATTTCATCACCGACTTCGAGACCAAAATCAACCTTCTCAAGTTGGCACATTTTGCTGTGATGGTTTCTCGACGGTATTCTGAGAAAGAAGCTGCCATTGGTTATCTTGAAGGGGTCATTGAGAAACTGCAAGCCACTAGAGAGCAGCGCATAGAAGAGCCTATCCTATACATTAAGATGCAAATTGCCTTATTCAAGCTTGAGCAAGGTGACCAAAAGGAATGCAAGAATCTTCTGGAAAATGGGAAGAGTACACTTGACAGCAGGACAGATATTGATCCAACTGTGTATGCGAGCTATTACTGGGTATCATCTCAATATCACAAATCCCGTCAGGAATTTGCTGAGTTTTACAAAAGTGCTCTTCTCTATTTGGCATACACATCAGTGGAGTCTCTCTCTAACTCATTCAAGCTGGATTTGGCATTTGACTTGTCCCTTTCTGCTCTGCTGGGGGATAACATCTACAACTTTGGAGAGCTACTTGCCCATCCTATTATTAAGAGCCTTCTAGGGTCAAAGGTGGAATGGCTCTACTATATTCTGCAGGCATTTAATTCTGGTGATTTGGTTCGATATCAAGAATTATGTCAGGTGCATAATGATGCTTTGAGTGCTCAACCAGCACTAGTTCAAAATGAACAGAAGCTGTTGGAAAAGATCAACATTCTGTGTCTGATGGAAATTATATTCAGCCGGCCTTCGGAAGATCGAACTATTCCCTTGAGTGTTATTGCAGAGCGAACAAAACTTTCTATAGAGAATGTGGAGCATCTCCTTATGAAGAGCCTATCTGTTCATCTGATTGAGGGTATAATTGATCAAGTGGAGGGCACAGTACATGTTTCCTGGGTGCAACCAAGAGTTCTGGGTATTGAACAGATAAAATCCTTACGGGATCGATTGGACGGTTGGACCGGAAAAGTACACGCGGCGTTGTTGTCCATCGAGGCAGAAACACCTGATTTAATTGGATCGTGA

Protein sequence

>MsG0580025408.01.T01

MAALQYLESLRSSHPELGEWYNSLADLYQKKLWHQLTLKLEQFLALAVFQDQAGDALIQLYNNFITDFETKINLLKLAHFAVMVSRRYSEKEAAIGYLEGVIEKLQATREQRIEEPILYIKMQIALFKLEQGDQKECKNLLENGKSTLDSRTDIDPTVYASYYWVSSQYHKSRQEFAEFYKSALLYLAYTSVESLSNSFKLDLAFDLSLSALLGDNIYNFGELLAHPIIKSLLGSKVEWLYYILQAFNSGDLVRYQELCQVHNDALSAQPALVQNEQKLLEKINILCLMEIIFSRPSEDRTIPLSVIAERTKLSIENVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIEQIKSLRDRLDGWTGKVHAALLSIEAETPDLIGS*