AlfalfaGEDB | MsG0480021891.01

M. sativa cultivar ZhongmuNo.1 / MsG0480021891.01

KEGG: K01465
GO: GO:0004151 GO:0016787 GO:0016812 GO:0019856
PFAM: PF01979

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021891.01.T01	XP_003607471.1	89.119	386	2	1	1	386	1	346	0	692

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021891.01.T01	O04904	70.052	384	75	1	1	384	33	376	0	570

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021891.01.T01	G7JTT9	89.119	386	2	1	1	386	1	346	0.0	692

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0380014948.01	MsG0480021891.01	0.800408	1.461930e-48	6.801933e-46
MsG0380015332.01	MsG0480021891.01	0.800496	1.402703e-48	6.540890e-46
MsG0380015363.01	MsG0480021891.01	0.823832	1.119975e-53	9.751902e-51
MsG0480020402.01	MsG0480021891.01	0.800172	1.632541e-48	7.550166e-46
MsG0480021870.01	MsG0480021891.01	0.836621	8.406930e-57	1.065177e-53
MsG0480021891.01	MsG0480023354.01	0.811464	6.909320e-51	4.279910e-48
MsG0480021891.01	MsG0480023463.01	0.813731	2.206116e-51	1.452207e-48
MsG0480021891.01	MsG0580029008.01	0.812325	4.487880e-51	2.844876e-48
MsG0480021891.01	MsG0580030142.01	0.811964	5.378492e-51	3.376096e-48
MsG0480021891.01	MsG0780039257.01	0.814546	1.458104e-51	9.812456e-49

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021891.01.T01	MTR_4g078370	89.119	386	2	1	1	386	1	346	0.0	692

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021891.01.T01	AT4G22930	70.052	384	75	1	1	384	33	376	0.0	570
MsG0480021891.01.T01	AT4G22930	70.052	384	75	1	1	384	33	376	0.0	570

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Find 117 sgRNAs with CRISPR-Local

Find 441 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGCTTTGCACTGTGAG+GGG	0.602141	4:+65633085	None:intergenic
AAATGGAAACGATAGACACT+CGG	0.625624	4:+65629578	None:intergenic
AAATTGTTATTCTGTTCTTG+AGG	0.556275	4:-65632612	MsG0480021891.01.T01:CDS
AACAGCAGAGACAGAGAGAA+TGG	0.479518	4:-65633177	MsG0480021891.01.T01:exon
AAGTCTTAGCATCTGCTACT+TGG	0.474592	4:+65635705	None:intergenic
AAGTGTTTCACCGGCAAACA+TGG	0.467013	4:+65629542	None:intergenic
AATCGCAATGCTTTGTTCCA+AGG	0.460976	4:-65631522	MsG0480021891.01.T01:CDS
AATGGAAACGATAGACACTC+GGG	0.667966	4:+65629579	None:intergenic
ACAAGTCAAAGATTAAACTG+AGG	0.713629	4:-65629620	MsG0480021891.01.T01:CDS
ACCAGTTGGTACAAGCTATC+AGG	0.362028	4:+65629404	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGCAAGATTCAATTCTC+AGG	+	Chr4:65630552-65630571	None:intergenic	30.0%
AAGAAACAAAAAATTGGGGA+AGG	+	Chr4:65632532-65632551	None:intergenic	30.0%
AAGAAGAAGAATGGAAGATA+TGG	+	Chr4:65631080-65631099	None:intergenic	30.0%
AAGAATTGAACTACTTCTTC+CGG	-	Chr4:65633674-65633693	MsG0480021891.01.T01:intron	30.0%
AATGCAAGATTCAATTCTCA+GGG	+	Chr4:65630551-65630570	None:intergenic	30.0%
AATTGGGAGAAGATAATTAG+GGG	-	Chr4:65629564-65629583	MsG0480021891.01.T01:CDS	30.0%
ACAAGTCAAAGATTAAACTG+AGG	-	Chr4:65635412-65635431	MsG0480021891.01.T01:intron	30.0%
ACCAAACCTAAAAGGTAAAA+AGG	+	Chr4:65629499-65629518	None:intergenic	30.0%
ACCCAATATTATTTACCTGT+CGG	+	Chr4:65630106-65630125	None:intergenic	30.0%
ACCGACAGGTAAATAATATT+GGG	-	Chr4:65630102-65630121	MsG0480021891.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	65629094	65635960	65629094	ID=MsG0480021891.01;Name=MsG0480021891.01
Chr4	mRNA	65629094	65635960	65629094	ID=MsG0480021891.01.T01;Parent=MsG0480021891.01;Name=MsG0480021891.01.T01;_AED=0.36;_eAED=0.40;_QI=408\|0.71\|0.87\|1\|0.85\|0.75\|8\|424\|386
Chr4	exon	65629094	65629712	65629094	ID=MsG0480021891.01.T01:exon:20664;Parent=MsG0480021891.01.T01
Chr4	exon	65630451	65630570	65630451	ID=MsG0480021891.01.T01:exon:20663;Parent=MsG0480021891.01.T01
Chr4	exon	65630726	65630886	65630726	ID=MsG0480021891.01.T01:exon:20662;Parent=MsG0480021891.01.T01
Chr4	exon	65631469	65631585	65631469	ID=MsG0480021891.01.T01:exon:20661;Parent=MsG0480021891.01.T01
Chr4	exon	65631681	65631846	65631681	ID=MsG0480021891.01.T01:exon:20660;Parent=MsG0480021891.01.T01
Chr4	exon	65632583	65632719	65632583	ID=MsG0480021891.01.T01:exon:20659;Parent=MsG0480021891.01.T01
Chr4	exon	65632916	65633322	65632916	ID=MsG0480021891.01.T01:exon:20658;Parent=MsG0480021891.01.T01
Chr4	exon	65635695	65635960	65635695	ID=MsG0480021891.01.T01:exon:20657;Parent=MsG0480021891.01.T01
Chr4	five_prime_UTR	65635695	65635960	65635695	ID=MsG0480021891.01.T01:five_prime_utr;Parent=MsG0480021891.01.T01
Chr4	five_prime_UTR	65633181	65633322	65633181	ID=MsG0480021891.01.T01:five_prime_utr;Parent=MsG0480021891.01.T01
Chr4	CDS	65632916	65633180	65632916	ID=MsG0480021891.01.T01:cds;Parent=MsG0480021891.01.T01
Chr4	CDS	65632583	65632719	65632583	ID=MsG0480021891.01.T01:cds;Parent=MsG0480021891.01.T01
Chr4	CDS	65631681	65631846	65631681	ID=MsG0480021891.01.T01:cds;Parent=MsG0480021891.01.T01
Chr4	CDS	65631469	65631585	65631469	ID=MsG0480021891.01.T01:cds;Parent=MsG0480021891.01.T01
Chr4	CDS	65630726	65630886	65630726	ID=MsG0480021891.01.T01:cds;Parent=MsG0480021891.01.T01
Chr4	CDS	65630451	65630570	65630451	ID=MsG0480021891.01.T01:cds;Parent=MsG0480021891.01.T01
Chr4	CDS	65629518	65629712	65629518	ID=MsG0480021891.01.T01:cds;Parent=MsG0480021891.01.T01
Chr4	three_prime_UTR	65629094	65629517	65629094	ID=MsG0480021891.01.T01:three_prime_utr;Parent=MsG0480021891.01.T01

Gene Sequence

>MsG0480021891.01.T01

ATGGAGCTAACAATTGCACAGCCTGATGATTTTCATCTTCATCTTCGCGACGGTGCTCTTCTTGAAGCTGTAACCCCTCACAGTGCAAAGCATTTTGGAAGGGCTATTATCATGCCCAATTTGAAACCACCTATCACTACCACATCTTCTGCTATTTCTTATCGAGAATCTATTTTGAAAGCAATACCTAAAACTTCCAATTTCACTCCTCTCATGACACTTTATCTCACTGATGCTACAACTCCGAATGAGATTCAACTTGCAAAAAAAAGTGGATTTGTTTATGGTGTGAAGTTGTATCCTGCTGGAGCTACAACAAACTCACAAGATGGTGTTACAGATCTTTTTGGAAATTGTTATTCTGTTCTTGAGGAAATGGTTGAGCAAGGTTTGCCATTATTGGTTCACGGAGAGGTTACAAATCCAGAAGTTGATATTTTTGACCGGGAAAAGGTCTTTATTGAAACAATTTTAGAGCCTTTAATTCGAAGGCTTCCGCAATTGAAGGTTGTGATGGAGCATATTACTACCATGGATGCTGTTAAATTTGTAGAGTCTTGCAAAGAAGGTTATGTAGCAGCAACAGTTACACCTCAGCATATTCTTCTCAATCGCAATGCTTTGTTCCAAGGTGGCTTGCAGCCTCACAATTACTGTCTTCCCGTGCTTAAAAGAGAGATCCACAGACAGGCTATTGTTTCAGCTATCACTAGTGGAAGTAGACGATTTTTCCTTGGAACTGATAGTGCTCCACATGATAGGCGTAAAAAGGAATCTGCTTGTGGATGTGCTGGCATCTACAACTCCCCGGTTGCTCTATCACTATATGCCAAGGTTTTTGAAGAGAAATTAAAATGGAGAAATGCTATGAACACTTTCTCTATCACTCACTCTTTTATTGGGTGGAACCCATGTGGATCTCACCACTTTATGTGGGAGCCATTTCCAAAGTGTGAGACCCACATGGCTGGTGCACTTGACAAGCTGGAAGCTTTTACAAGCTTTAATGGACCTGACTTCTACGGTATCCCCAGAAACAAGTCAAAGATTAAACTGAGGAAATCTCCTTGGAGAGTACCCGAGTGTCTATCGTTTCCATTTGGAGATATTATTCCCATGTTTGCCGGTGAAACACTTGAATGGGAAGCATTGCTTATTTGA

Protein sequence

>MsG0480021891.01.T01

MELTIAQPDDFHLHLRDGALLEAVTPHSAKHFGRAIIMPNLKPPITTTSSAISYRESILKAIPKTSNFTPLMTLYLTDATTPNEIQLAKKSGFVYGVKLYPAGATTNSQDGVTDLFGNCYSVLEEMVEQGLPLLVHGEVTNPEVDIFDREKVFIETILEPLIRRLPQLKVVMEHITTMDAVKFVESCKEGYVAATVTPQHILLNRNALFQGGLQPHNYCLPVLKREIHRQAIVSAITSGSRRFFLGTDSAPHDRRKKESACGCAGIYNSPVALSLYAKVFEEKLKWRNAMNTFSITHSFIGWNPCGSHHFMWEPFPKCETHMAGALDKLEAFTSFNGPDFYGIPRNKSKIKLRKSPWRVPECLSFPFGDIIPMFAGETLEWEALLI*