AlfalfaGEDB | MsG0480022203.01

M. sativa cultivar ZhongmuNo.1 / MsG0480022203.01

KEGG: K15188
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022203.01.T01	XP_039689054.1	62.082	269	3	3	1	181	1	258	2.79E-98	305

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022203.01.T01	Q2RAC5	66.146	192	9	2	35	181	81	261	1.39E-76	240

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022203.01.T01	A0A396IBC3	62.082	269	3	3	1	181	1	258	2.26e-99	308

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048602.01	MsG0480022203.01	0.802851	4.610932e-49	2.282605e-46
MsG0180000494.01	MsG0480022203.01	0.819804	9.579218e-53	7.447605e-50
MsG0180000555.01	MsG0480022203.01	0.848278	6.785367e-60	1.238839e-56
MsG0180000604.01	MsG0480022203.01	0.817376	3.405574e-52	2.475972e-49
MsG0180000680.01	MsG0480022203.01	0.839939	1.173415e-57	1.645828e-54
MsG0180000702.01	MsG0480022203.01	0.807212	5.644890e-50	3.125696e-47
MsG0180000703.01	MsG0480022203.01	0.818883	1.553311e-52	1.177155e-49
MsG0180000741.01	MsG0480022203.01	0.868592	5.822785e-66	2.118108e-62
MsG0180000797.01	MsG0480022203.01	0.807139	5.847595e-50	3.231710e-47
MsG0180000855.01	MsG0480022203.01	0.809768	1.607302e-50	9.520486e-48

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022203.01.T01	MTR_4g083690	62.082	269	3	3	1	181	1	258	3.96e-102	305
MsG0480022203.01.T01	MTR_2g068690	52.416	269	28	4	1	181	1	257	6.92e-77	241
MsG0480022203.01.T01	MTR_7g094070	56.650	203	32	2	33	190	46	237	7.88e-68	214
MsG0480022203.01.T01	MTR_7g094060	67.500	120	27	2	63	181	4	112	2.52e-39	138
MsG0480022203.01.T01	MTR_1g104820	36.458	192	64	3	35	181	184	362	2.08e-25	101
MsG0480022203.01.T01	MTR_1g104820	36.458	192	64	3	35	181	245	423	3.75e-25	101

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022203.01.T01	AT5G45190	63.918	194	14	2	33	181	75	257	7.97e-76	238
MsG0480022203.01.T01	AT4G19600	62.887	194	16	2	33	181	75	257	3.81e-75	235
MsG0480022203.01.T01	AT5G45190	64.211	190	12	2	37	181	90	268	6.52e-74	233
MsG0480022203.01.T01	AT5G45190	76.562	128	19	1	60	187	38	154	1.46e-63	203
MsG0480022203.01.T01	AT4G19560	50.249	201	41	5	29	182	66	254	8.02e-43	149
MsG0480022203.01.T01	AT1G35440	37.824	193	69	3	35	187	51	232	1.63e-34	122
MsG0480022203.01.T01	AT4G19560	53.741	147	54	3	37	181	47	181	1.34e-32	120
MsG0480022203.01.T01	AT1G27630	35.417	192	65	5	36	182	79	256	5.10e-28	106
MsG0480022203.01.T01	AT1G27630	35.602	191	64	5	36	181	79	255	1.23e-27	106
MsG0480022203.01.T01	AT1G27630	34.239	184	62	5	43	181	1	170	5.58e-25	97.4

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Find 57 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTGAAGCTTCCGTCAGA+CGG	0.595709	4:-69657265	MsG0480022203.01.T01:CDS
AAGAAGAAGCATTGGGTCGC+TGG	0.490936	4:-69660750	MsG0480022203.01.T01:intron
AAGCCACATCATATTGCGGC+AGG	0.507122	4:-69657316	MsG0480022203.01.T01:CDS
AAGCTTCACTTTCAGGAACT+TGG	0.431818	4:+69657276	None:intergenic
ACCAACCCTCCAATTGGCGT+GGG	0.488824	4:+69657209	None:intergenic
ACGCCCTTGCACAAGTTGCA+TGG	0.578134	4:-69657475	MsG0480022203.01.T01:CDS
ACTTCTTTATGGCCTCGACA+AGG	0.571121	4:+69657513	None:intergenic
AGATAAGCAAGAAGAAGCAT+TGG	0.512627	4:-69660758	MsG0480022203.01.T01:CDS
AGCAACATTGAACTTCTTTA+TGG	0.142833	4:+69657502	None:intergenic
AGTTCCATGCAACTTGTGCA+AGG	0.554121	4:+69657471	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACTCATAGTTTAAGAGCTT+CGG	+	Chr4:69658320-69658339	None:intergenic	30.0%
AAGCTCTTAAACTATGAGTT+GGG	-	Chr4:69658320-69658339	MsG0480022203.01.T01:intron	30.0%
AATGCAACTTACAAAAGATC+AGG	+	Chr4:69657962-69657981	None:intergenic	30.0%
AGCAACATTGAACTTCTTTA+TGG	+	Chr4:69660510-69660529	None:intergenic	30.0%
ATCTGTGATCTTATTGCTAT+TGG	-	Chr4:69659370-69659389	MsG0480022203.01.T01:intron	30.0%
ATGCAACTTACAAAAGATCA+GGG	+	Chr4:69657961-69657980	None:intergenic	30.0%
ATTTAAGCCACATCATATTG+CGG	-	Chr4:69660689-69660708	MsG0480022203.01.T01:intron	30.0%
CTATAGAAGAACAACAAATC+TGG	+	Chr4:69658792-69658811	None:intergenic	30.0%
GTATTTGAAAGGAAACAGAA+TGG	+	Chr4:69659656-69659675	None:intergenic	30.0%
TAAACAAAATACAAAGAGCG+GGG	+	Chr4:69660322-69660341	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	69657180	69660851	69657180	ID=MsG0480022203.01;Name=MsG0480022203.01
Chr4	mRNA	69657180	69660851	69657180	ID=MsG0480022203.01.T01;Parent=MsG0480022203.01;Name=MsG0480022203.01.T01;_AED=0.45;_eAED=0.45;_QI=0\|0\|0\|1\|0.33\|0.25\|4\|0\|192
Chr4	exon	69660751	69660851	69660751	ID=MsG0480022203.01.T01:exon:55554;Parent=MsG0480022203.01.T01
Chr4	exon	69660114	69660199	69660114	ID=MsG0480022203.01.T01:exon:55553;Parent=MsG0480022203.01.T01
Chr4	exon	69657459	69657629	69657459	ID=MsG0480022203.01.T01:exon:55552;Parent=MsG0480022203.01.T01
Chr4	exon	69657180	69657400	69657180	ID=MsG0480022203.01.T01:exon:55551;Parent=MsG0480022203.01.T01
Chr4	CDS	69660751	69660851	69660751	ID=MsG0480022203.01.T01:cds;Parent=MsG0480022203.01.T01
Chr4	CDS	69660114	69660199	69660114	ID=MsG0480022203.01.T01:cds;Parent=MsG0480022203.01.T01
Chr4	CDS	69657459	69657629	69657459	ID=MsG0480022203.01.T01:cds;Parent=MsG0480022203.01.T01
Chr4	CDS	69657180	69657400	69657180	ID=MsG0480022203.01.T01:cds;Parent=MsG0480022203.01.T01

Gene Sequence

>MsG0480022203.01.T01

ATGGCAGCACTTGTGTCTGGAGAGTTGCCACATCATGGAGCATCTGACGGAAGCTCTTGTAGAAGTTCTCAAGATAAGCAAGAAGAAGCATTGGGTCGCTGGCCTCAAGTAACTATAGCAACAGCCATAATATTTTGTCATCGATTCTTTCTTCGACAATCTCATGCAAAGAATGACCGAAGGGTGGTATATGAGCAGCAGAAAGAATTAATTTTACTTGGAGAGAGGGTTGTACTTGCCACTTTGGCTTTTGACTTGAATGTCCAACATCCATATAAGCCCCTTGTCGAGGCCATAAAGAAGTTCAATGTTGCTAAGAACGCCCTTGCACAAGTTGCATGGAACTTTGTAATGATGGGTTTTTTGTTCACACACTGGAAAGTGGCTTTCAGGCTGAGGACATCACTCTGCCTACAATTTAAGCCACATCATATTGCGGCAGGTGCCATTTTCCTTGCTGCCAAGTTCCTGAAAGTGAAGCTTCCGTCAGACGGTGAGAAGGTCTGGTGGCAGGAGTTTGATGTCACCCCACGCCAATTGGAGGGTTGGTGCCATCCCCTCAATTCATTTGCATACTAA

Protein sequence

>MsG0480022203.01.T01

MAALVSGELPHHGASDGSSCRSSQDKQEEALGRWPQVTIATAIIFCHRFFLRQSHAKNDRRVVYEQQKELILLGERVVLATLAFDLNVQHPYKPLVEAIKKFNVAKNALAQVAWNFVMMGFLFTHWKVAFRLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGEKVWWQEFDVTPRQLEGWCHPLNSFAY*