AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000703.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000703.01.T01 MTR_1g010090 54.864 257 57 5 50 264 283 522 1.86e-60 204
MsG0180000703.01.T01 MTR_1g010090 63.636 88 19 1 159 246 670 744 3.26e-20 90.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 74 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTTGATTCTTTCTTTCTT+TGG 0.146629 1:-9945258 None:intergenic
CTGTCATTTATTTCCTCCTT+TGG 0.263768 1:-9944043 None:intergenic
GACAAGACAAACATGTTAAA+AGG 0.325484 1:+9943899 MsG0180000703.01.T01:CDS
GAGAAAGAAGGCATTATAGA+AGG 0.355736 1:+9945407 MsG0180000703.01.T01:CDS
AGTAGCAGTGATAGTGAAAC+TGG 0.362833 1:+9943946 MsG0180000703.01.T01:CDS
AGAGAGGCAGAAATTATAAC+AGG 0.378338 1:+9944380 MsG0180000703.01.T01:CDS
GATGGACAAGATAGGAAGTT+TGG 0.385688 1:+9944247 MsG0180000703.01.T01:CDS
GATTCTTTAAGAAAATCATA+TGG 0.386721 1:+9944115 MsG0180000703.01.T01:CDS
GGCAGTGTTAGGCATGCTTC+AGG 0.402014 1:+9943877 MsG0180000703.01.T01:CDS
TATGGAAGAACTAGAAAAGT+TGG 0.411014 1:+9943998 MsG0180000703.01.T01:CDS
AGAGGTAATGCTGCAGGAAA+AGG 0.422438 1:+9944064 MsG0180000703.01.T01:CDS
TTGATTCTTTCTTTCTTTGG+CGG 0.432772 1:-9945255 None:intergenic
CGCAGAAGGGATGATGATGA+TGG 0.463489 1:+9945379 MsG0180000703.01.T01:CDS
TAGTGCCAAGGTTGATGGAT+TGG 0.477705 1:+9944093 MsG0180000703.01.T01:CDS
ATTCTTTAAGAAAATCATAT+GGG 0.479018 1:+9944116 MsG0180000703.01.T01:CDS
GTCAAATTTGCTAAGCATGA+TGG 0.484595 1:+9944229 MsG0180000703.01.T01:intron
CTCAAGGGATGAGGATGTTG+TGG 0.492092 1:+9945309 MsG0180000703.01.T01:CDS
AATAAAGAACTCTAGGTATG+AGG 0.492130 1:+9945192 MsG0180000703.01.T01:CDS
CTAAGCATGATGGACAAGAT+AGG 0.495879 1:+9944239 MsG0180000703.01.T01:intron
ACTCTGGTAGAGGCAGTGTT+AGG 0.496371 1:+9943866 MsG0180000703.01.T01:CDS
TCTAAATCAGCTAGGATCAG+AGG 0.496676 1:+9944334 MsG0180000703.01.T01:CDS
GCCAAAGAAAGAAAGAATCA+AGG 0.506424 1:+9945257 MsG0180000703.01.T01:CDS
AGTGATAGTGATCGCAGGTA+TGG 0.512964 1:+9943980 MsG0180000703.01.T01:CDS
GAGAAAGAGCTCAAGGGATG+AGG 0.514293 1:+9945300 MsG0180000703.01.T01:CDS
GTGTAGAAATAAAGAACTCT+AGG 0.518740 1:+9945185 MsG0180000703.01.T01:CDS
ATGGAAGAACTAGAAAAGTT+GGG 0.521877 1:+9943999 MsG0180000703.01.T01:CDS
TGGAGAAAGAAAAGCGCAGA+AGG 0.523577 1:+9945365 MsG0180000703.01.T01:CDS
GAAGCACAAAACAGAAGGAT+GGG 0.527077 1:+9945155 MsG0180000703.01.T01:intron
TCAAGGGATGAGGATGTTGT+GGG 0.531064 1:+9945310 MsG0180000703.01.T01:CDS
AATGACAGAGGTAATGCTGC+AGG 0.531486 1:+9944058 MsG0180000703.01.T01:CDS
AGAAAGAAGGCATTATAGAA+GGG 0.532131 1:+9945408 MsG0180000703.01.T01:CDS
ACAGAGTGAGAAAGAGCTCA+AGG 0.533328 1:+9945293 MsG0180000703.01.T01:CDS
GAGGTAATGCTGCAGGAAAA+GGG 0.538469 1:+9944065 MsG0180000703.01.T01:CDS
AGAGGGGATGATGAGTATCA+TGG 0.540257 1:+9945345 MsG0180000703.01.T01:CDS
GGTTCTATTGATGCAGACTC+TGG 0.540789 1:+9943850 MsG0180000703.01.T01:CDS
AAGGAAGAACTCAAGGGAAG+AGG 0.544319 1:+9945228 MsG0180000703.01.T01:CDS
GTGGAGAAAGAAAGCACAGA+AGG 0.547097 1:+9945443 MsG0180000703.01.T01:CDS
AAGAAAGCACAGAAGGGAGT+AGG 0.549615 1:+9945450 MsG0180000703.01.T01:CDS
AGAAGCACAAAACAGAAGGA+TGG 0.550668 1:+9945154 MsG0180000703.01.T01:intron
CTAAATCAGCTAGGATCAGA+GGG 0.558128 1:+9944335 MsG0180000703.01.T01:CDS
GCAAAGAAAGGAAGAACTCA+AGG 0.561372 1:+9945221 MsG0180000703.01.T01:CDS
AGAATCCAATCCATCAACCT+TGG 0.565326 1:-9944098 None:intergenic
ATGAGGATGATCGCAAAGAA+AGG 0.565805 1:+9945209 MsG0180000703.01.T01:CDS
AGAAGGGATGATGATGATCG+TGG 0.570623 1:+9945424 MsG0180000703.01.T01:CDS
GTGGGGAAAGAAAGCACAGA+GGG 0.571480 1:+9945328 MsG0180000703.01.T01:CDS
CCAAAGAAAGAAAGAATCAA+GGG 0.575336 1:+9945258 MsG0180000703.01.T01:CDS
ATTGATGCAGACTCTGGTAG+AGG 0.577993 1:+9943856 MsG0180000703.01.T01:CDS
AGGGATGATGATGATGGGCA+TGG 0.590007 1:+9945385 MsG0180000703.01.T01:CDS
ATGGTTATTCTAAATCAGCT+AGG 0.591198 1:+9944326 MsG0180000703.01.T01:CDS
AATGAAAATGAAGAAAGAGA+TGG 0.593131 1:+9944307 MsG0180000703.01.T01:CDS
ATAGAGAAGCACAAAACAGA+AGG 0.595940 1:+9945150 MsG0180000703.01.T01:intron
CATATGGGGAGATTATAAAG+AGG 0.596441 1:+9944131 MsG0180000703.01.T01:CDS
AGCGAAGAGAAGTGAGCCAA+AGG 0.596644 1:+9944027 MsG0180000703.01.T01:CDS
CAGAGTGAGAAAGAGCTCAA+GGG 0.606711 1:+9945294 MsG0180000703.01.T01:CDS
GCAGAAGGGATGATGATGAT+GGG 0.608301 1:+9945380 MsG0180000703.01.T01:CDS
ATGATGGGCATGGAGAAAGA+AGG 0.620146 1:+9945395 MsG0180000703.01.T01:CDS
TGAGGAGTGATAGTGATCGC+AGG 0.624334 1:+9943975 MsG0180000703.01.T01:CDS
ATCACTGCTACTCTCATCAG+AGG 0.629147 1:-9943935 None:intergenic
ATATGGGGAGATTATAAAGA+GGG 0.631021 1:+9944132 MsG0180000703.01.T01:CDS
TGGAGAAAGAAAGCACAGAA+GGG 0.632987 1:+9945444 MsG0180000703.01.T01:CDS
AAGCACAAAACAGAAGGATG+GGG 0.649229 1:+9945156 MsG0180000703.01.T01:CDS
ACAAAACAGAAGGATGGGGA+TGG 0.653755 1:+9945160 MsG0180000703.01.T01:CDS
TTCTTTAAGAAAATCATATG+GGG 0.654898 1:+9944117 MsG0180000703.01.T01:CDS
GGAGAAAGAAAAGCGCAGAA+GGG 0.657495 1:+9945366 MsG0180000703.01.T01:CDS
CAAAGAAAGGAAGAACTCAA+GGG 0.668656 1:+9945222 MsG0180000703.01.T01:CDS
GAAGAGAAGTGAGCCAAAGG+AGG 0.686174 1:+9944030 MsG0180000703.01.T01:CDS
AAGGAGGAAATAAATGACAG+AGG 0.696476 1:+9944046 MsG0180000703.01.T01:CDS
AAGACAAACATGTTAAAAGG+CGG 0.697682 1:+9943902 MsG0180000703.01.T01:CDS
CAAGGGATGAGGATGTTGTG+GGG 0.710191 1:+9945311 MsG0180000703.01.T01:CDS
AATGAAACTTCTGATCAGAG+AGG 0.718112 1:+9944364 MsG0180000703.01.T01:CDS
GAGAGGCAGAAATTATAACA+GGG 0.720186 1:+9944381 MsG0180000703.01.T01:CDS
TAGTGAAACTGGCAGCAGTG+AGG 0.728944 1:+9943957 MsG0180000703.01.T01:CDS
TGGGGAAAGAAAGCACAGAG+GGG 0.755948 1:+9945329 MsG0180000703.01.T01:CDS
TGTGGGGAAAGAAAGCACAG+AGG 0.809683 1:+9945327 MsG0180000703.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATGATAATGATTATAAAA+AGG + Chr1:9944473-9944492 MsG0180000703.01.T01:intron 10.0%
!!! ATTCTTTAAGAAAATCATAT+GGG + Chr1:9944116-9944135 MsG0180000703.01.T01:CDS 15.0%
!! ATGAAGAAAAAAAAATGGAA+GGG + Chr1:9944508-9944527 MsG0180000703.01.T01:intron 20.0%
!! TAATGATTATAAAAAGGATC+AGG + Chr1:9944479-9944498 MsG0180000703.01.T01:intron 20.0%
!!! GATTCTTTAAGAAAATCATA+TGG + Chr1:9944115-9944134 MsG0180000703.01.T01:CDS 20.0%
!!! TTCTTTAAGAAAATCATATG+GGG + Chr1:9944117-9944136 MsG0180000703.01.T01:CDS 20.0%
! AATGAAAATGAAGAAAGAGA+TGG + Chr1:9944307-9944326 MsG0180000703.01.T01:CDS 25.0%
! CATGAAGAAAAAAAAATGGA+AGG + Chr1:9944507-9944526 MsG0180000703.01.T01:intron 25.0%
! TGACCATGAAGAAAAAAAAA+TGG + Chr1:9944503-9944522 MsG0180000703.01.T01:intron 25.0%
!!! CTTCCATTTTTTTTTCTTCA+TGG - Chr1:9944509-9944528 None:intergenic 25.0%
AAAAGCTTAAGAGATGAAGA+TGG + Chr1:9944592-9944611 MsG0180000703.01.T01:intron 30.0%
AAAGAAAGATCAGAAGATTG+AGG + Chr1:9944695-9944714 MsG0180000703.01.T01:intron 30.0%
AAGACAAACATGTTAAAAGG+CGG + Chr1:9943902-9943921 MsG0180000703.01.T01:CDS 30.0%
AATAAAGAACTCTAGGTATG+AGG + Chr1:9945192-9945211 MsG0180000703.01.T01:CDS 30.0%
ATATGGGGAGATTATAAAGA+GGG + Chr1:9944132-9944151 MsG0180000703.01.T01:CDS 30.0%
ATGAAGAAAGGAAGAACTTA+AGG + Chr1:9944867-9944886 MsG0180000703.01.T01:intron 30.0%
ATGAAGATAGAGATAGAGAT+AGG + Chr1:9944200-9944219 MsG0180000703.01.T01:intron 30.0%
ATGGAAGAACTAGAAAAGTT+GGG + Chr1:9943999-9944018 MsG0180000703.01.T01:CDS 30.0%
ATGGTTATTCTAAATCAGCT+AGG + Chr1:9944326-9944345 MsG0180000703.01.T01:CDS 30.0%
CCAAAGAAAGAAAGAATCAA+GGG + Chr1:9945258-9945277 MsG0180000703.01.T01:CDS 30.0%
GACAAGACAAACATGTTAAA+AGG + Chr1:9943899-9943918 MsG0180000703.01.T01:CDS 30.0%
GATTATGAAACAAGAAGGAA+GGG + Chr1:9944447-9944466 MsG0180000703.01.T01:intron 30.0%
GGAGAAAAGAAAGAACTTAA+GGG + Chr1:9944762-9944781 MsG0180000703.01.T01:intron 30.0%
GTGTAGAAATAAAGAACTCT+AGG + Chr1:9945185-9945204 MsG0180000703.01.T01:CDS 30.0%
TATGGAAGAACTAGAAAAGT+TGG + Chr1:9943998-9944017 MsG0180000703.01.T01:CDS 30.0%
TGAAGAAAGGAAGAACTTAA+GGG + Chr1:9944868-9944887 MsG0180000703.01.T01:intron 30.0%
TGAAGATAGAGATAGAGATA+GGG + Chr1:9944201-9944220 MsG0180000703.01.T01:intron 30.0%
TGGAGAAAAGAAAGAACTTA+AGG + Chr1:9944761-9944780 MsG0180000703.01.T01:intron 30.0%
TTAGAGAAACAAAGACTAGA+AGG + Chr1:9945042-9945061 MsG0180000703.01.T01:intron 30.0%
TTGATTCTTTCTTTCTTTGG+CGG - Chr1:9945258-9945277 None:intergenic 30.0%
! AAGAGATGGAAAGCATAAAA+GGG + Chr1:9944544-9944563 MsG0180000703.01.T01:intron 30.0%
!! AGAAAGAAGGCATTATAGAA+GGG + Chr1:9945408-9945427 MsG0180000703.01.T01:CDS 30.0%
AAAAATAGTGCCAAGGTTGA+TGG + Chr1:9944088-9944107 MsG0180000703.01.T01:CDS 35.0%
AAAAGGGAAAAATAGTGCCA+AGG + Chr1:9944081-9944100 MsG0180000703.01.T01:CDS 35.0%
AACAAAGACTAGAAGGATTG+AGG + Chr1:9945049-9945068 MsG0180000703.01.T01:intron 35.0%
AAGAAAGAACTTAAGGGATG+AGG + Chr1:9944768-9944787 MsG0180000703.01.T01:intron 35.0%
AAGGAGGAAATAAATGACAG+AGG + Chr1:9944046-9944065 MsG0180000703.01.T01:CDS 35.0%
AAGGATGAAGATTATCCTAC+AGG + Chr1:9944638-9944657 MsG0180000703.01.T01:intron 35.0%
AATCTGTTGGACGAATTGAT+CGG + Chr1:9944415-9944434 MsG0180000703.01.T01:intron 35.0%
AATGAAACTTCTGATCAGAG+AGG + Chr1:9944364-9944383 MsG0180000703.01.T01:CDS 35.0%
AGAAAGAACTTAAGGGATGA+GGG + Chr1:9944769-9944788 MsG0180000703.01.T01:intron 35.0%
AGAAGTCAAACAATAGCCAA+GGG + Chr1:9944164-9944183 MsG0180000703.01.T01:intron 35.0%
AGAGAGGCAGAAATTATAAC+AGG + Chr1:9944380-9944399 MsG0180000703.01.T01:CDS 35.0%
ATGGAGAAAGAAGAGCTTAA+GGG + Chr1:9944939-9944958 MsG0180000703.01.T01:intron 35.0%
CAAAGAAAGGAAGAACTCAA+GGG + Chr1:9945222-9945241 MsG0180000703.01.T01:CDS 35.0%
CATATGGGGAGATTATAAAG+AGG + Chr1:9944131-9944150 MsG0180000703.01.T01:CDS 35.0%
CCCTTGATTCTTTCTTTCTT+TGG - Chr1:9945261-9945280 None:intergenic 35.0%
GAGAGGCAGAAATTATAACA+GGG + Chr1:9944381-9944400 MsG0180000703.01.T01:CDS 35.0%
GATGAAGATGATTCAAGAGA+TGG + Chr1:9944530-9944549 MsG0180000703.01.T01:intron 35.0%
GCCAAAGAAAGAAAGAATCA+AGG + Chr1:9945257-9945276 MsG0180000703.01.T01:CDS 35.0%
GGATTATGAAACAAGAAGGA+AGG + Chr1:9944446-9944465 MsG0180000703.01.T01:intron 35.0%
GTAGAGAAAGAAGAAACTCT+CGG + Chr1:9944797-9944816 MsG0180000703.01.T01:intron 35.0%
TAGAAGTCAAACAATAGCCA+AGG + Chr1:9944163-9944182 MsG0180000703.01.T01:intron 35.0%
TATGGAGAAAGAAGAGCTTA+AGG + Chr1:9944938-9944957 MsG0180000703.01.T01:intron 35.0%
! ATAGAGAAGCACAAAACAGA+AGG + Chr1:9945150-9945169 MsG0180000703.01.T01:intron 35.0%
! CAAGAGATGGAAAGCATAAA+AGG + Chr1:9944543-9944562 MsG0180000703.01.T01:intron 35.0%
! CATCAATTTTCTTTCACCCT+TGG - Chr1:9944183-9944202 None:intergenic 35.0%
! CTGTCATTTATTTCCTCCTT+TGG - Chr1:9944046-9944065 None:intergenic 35.0%
!! GAGAAAGAAGGCATTATAGA+AGG + Chr1:9945407-9945426 MsG0180000703.01.T01:CDS 35.0%
!! GTCAAATTTGCTAAGCATGA+TGG + Chr1:9944229-9944248 MsG0180000703.01.T01:intron 35.0%
!! TGGAGAAAGAAAGCACTTAA+GGG + Chr1:9945115-9945134 MsG0180000703.01.T01:intron 35.0%
!! TTGGAGAAAGAAAGCACTTA+AGG + Chr1:9945114-9945133 MsG0180000703.01.T01:intron 35.0%
AAAGAAGAGCTTAAGGGATG+AGG + Chr1:9944945-9944964 MsG0180000703.01.T01:intron 40.0%
AAGAACTTAAGGGATGGCAA+TGG + Chr1:9944878-9944897 MsG0180000703.01.T01:intron 40.0%
AAGAAGAGCTTAAGGGATGA+GGG + Chr1:9944946-9944965 MsG0180000703.01.T01:intron 40.0%
AAGCACAAAACAGAAGGATG+GGG + Chr1:9945156-9945175 MsG0180000703.01.T01:CDS 40.0%
AATATCGTCTTCATCCCTCA+AGG - Chr1:9945096-9945115 None:intergenic 40.0%
ACGGGGATGATTATGAAGAA+AGG + Chr1:9944855-9944874 MsG0180000703.01.T01:intron 40.0%
AGAAAGAAAGAACTCTCGGA+TGG + Chr1:9944978-9944997 MsG0180000703.01.T01:intron 40.0%
AGAAAGAAGAAACTCTCGGA+TGG + Chr1:9944801-9944820 MsG0180000703.01.T01:intron 40.0%
AGAATCCAATCCATCAACCT+TGG - Chr1:9944101-9944120 None:intergenic 40.0%
ATGAGGATGATCGCAAAGAA+AGG + Chr1:9945209-9945228 MsG0180000703.01.T01:CDS 40.0%
CTAAATCAGCTAGGATCAGA+GGG + Chr1:9944335-9944354 MsG0180000703.01.T01:CDS 40.0%
CTTGAGGATGAAGATGATCA+CGG + Chr1:9944670-9944689 MsG0180000703.01.T01:intron 40.0%
GAAAGGAAGAACTTAAGGGA+TGG + Chr1:9944872-9944891 MsG0180000703.01.T01:intron 40.0%
GAAGCACAAAACAGAAGGAT+GGG + Chr1:9945155-9945174 MsG0180000703.01.T01:intron 40.0%
GAGGAGAAAGAAAGAACTCT+CGG + Chr1:9944974-9944993 MsG0180000703.01.T01:intron 40.0%
GATGGACAAGATAGGAAGTT+TGG + Chr1:9944247-9944266 MsG0180000703.01.T01:CDS 40.0%
GCAAAGAAAGGAAGAACTCA+AGG + Chr1:9945221-9945240 MsG0180000703.01.T01:CDS 40.0%
GGATGTTGATCACAATCTGT+TGG + Chr1:9944402-9944421 MsG0180000703.01.T01:intron 40.0%
GGGAGGATTATGAAACAAGA+AGG + Chr1:9944442-9944461 MsG0180000703.01.T01:intron 40.0%
TACAGGAAGAAAGACCTTGA+GGG + Chr1:9945079-9945098 MsG0180000703.01.T01:intron 40.0%
TCTAAATCAGCTAGGATCAG+AGG + Chr1:9944334-9944353 MsG0180000703.01.T01:CDS 40.0%
TGGACGAATTGATCGGAATA+GGG + Chr1:9944422-9944441 MsG0180000703.01.T01:intron 40.0%
TTGAGGGATGAAGACGATAT+TGG + Chr1:9945095-9945114 MsG0180000703.01.T01:intron 40.0%
TTGGACGAATTGATCGGAAT+AGG + Chr1:9944421-9944440 MsG0180000703.01.T01:intron 40.0%
! AGAAGCACAAAACAGAAGGA+TGG + Chr1:9945154-9945173 MsG0180000703.01.T01:intron 40.0%
! AGTAGCAGTGATAGTGAAAC+TGG + Chr1:9943946-9943965 MsG0180000703.01.T01:CDS 40.0%
! CTTAAGCTTTTCTTCTCTCC+CGG - Chr1:9944583-9944602 None:intergenic 40.0%
! TGGAGAAAGAAAGCACAGAA+GGG + Chr1:9945444-9945463 MsG0180000703.01.T01:CDS 40.0%
!! AAGAAAGCACTTAAGGGATG+AGG + Chr1:9945121-9945140 MsG0180000703.01.T01:intron 40.0%
!! AGAAAAGAAGCTCTAGAGAC+GGG + Chr1:9944837-9944856 MsG0180000703.01.T01:intron 40.0%
!! AGAAAGCACTTAAGGGATGA+GGG + Chr1:9945122-9945141 MsG0180000703.01.T01:intron 40.0%
!! CTAAGCATGATGGACAAGAT+AGG + Chr1:9944239-9944258 MsG0180000703.01.T01:intron 40.0%
!! GAGAAAAGAAGCTCTAGAGA+CGG + Chr1:9944836-9944855 MsG0180000703.01.T01:intron 40.0%
AAAGAACTCTCGGATGGTGA+TGG + Chr1:9944984-9945003 MsG0180000703.01.T01:intron 45.0%
AAGAACTTAAGGGATGAGGG+TGG + Chr1:9944772-9944791 MsG0180000703.01.T01:intron 45.0%
AAGATTGAGGATGAACGTGC+AGG + Chr1:9944708-9944727 MsG0180000703.01.T01:intron 45.0%
AAGGAAGAACTCAAGGGAAG+AGG + Chr1:9945228-9945247 MsG0180000703.01.T01:CDS 45.0%
AATGACAGAGGTAATGCTGC+AGG + Chr1:9944058-9944077 MsG0180000703.01.T01:CDS 45.0%
ACAAAACAGAAGGATGGGGA+TGG + Chr1:9945160-9945179 MsG0180000703.01.T01:CDS 45.0%
ACAGAGTGAGAAAGAGCTCA+AGG + Chr1:9945293-9945312 MsG0180000703.01.T01:CDS 45.0%
ACGAATTGATCGGAATAGGG+AGG + Chr1:9944425-9944444 MsG0180000703.01.T01:intron 45.0%
AGAGGGGATGATGAGTATCA+TGG + Chr1:9945345-9945364 MsG0180000703.01.T01:CDS 45.0%
AGAGGTAATGCTGCAGGAAA+AGG + Chr1:9944064-9944083 MsG0180000703.01.T01:CDS 45.0%
AGGATTGAGGATGATCGTAC+AGG + Chr1:9945062-9945081 MsG0180000703.01.T01:intron 45.0%
ATAATCATCCCCATCCCTCA+AGG - Chr1:9944742-9944761 None:intergenic 45.0%
ATCACTGCTACTCTCATCAG+AGG - Chr1:9943938-9943957 None:intergenic 45.0%
ATTGATGCAGACTCTGGTAG+AGG + Chr1:9943856-9943875 MsG0180000703.01.T01:CDS 45.0%
CAGAGTGAGAAAGAGCTCAA+GGG + Chr1:9945294-9945313 MsG0180000703.01.T01:CDS 45.0%
CTCAAGTGCTTTCTTCCTGT+AGG - Chr1:9944656-9944675 None:intergenic 45.0%
GAGGTAATGCTGCAGGAAAA+GGG + Chr1:9944065-9944084 MsG0180000703.01.T01:CDS 45.0%
GGGGAGATTATAAAGAGGGT+CGG + Chr1:9944136-9944155 MsG0180000703.01.T01:intron 45.0%
GGTTCTATTGATGCAGACTC+TGG + Chr1:9943850-9943869 MsG0180000703.01.T01:CDS 45.0%
GTACAGGAAGAAAGACCTTG+AGG + Chr1:9945078-9945097 MsG0180000703.01.T01:intron 45.0%
TCAAGGGATGAGGATGTTGT+GGG + Chr1:9945310-9945329 MsG0180000703.01.T01:CDS 45.0%
TCTAGGGATGGGGATGATTA+TGG + Chr1:9944920-9944939 MsG0180000703.01.T01:intron 45.0%
TGGAGAGAAAAGGAGCTCTA+GGG + Chr1:9944904-9944923 MsG0180000703.01.T01:intron 45.0%
TTGAGGGATGGGGATGATTA+TGG + Chr1:9944741-9944760 MsG0180000703.01.T01:intron 45.0%
! AGAAGGGATGATGATGATCG+TGG + Chr1:9945424-9945443 MsG0180000703.01.T01:CDS 45.0%
! AGTGATAGTGATCGCAGGTA+TGG + Chr1:9943980-9943999 MsG0180000703.01.T01:CDS 45.0%
! GCAGAAGGGATGATGATGAT+GGG + Chr1:9945380-9945399 MsG0180000703.01.T01:CDS 45.0%
! GGAGAAAGAAAAGCGCAGAA+GGG + Chr1:9945366-9945385 MsG0180000703.01.T01:CDS 45.0%
! GTGGAGAAAGAAAGCACAGA+AGG + Chr1:9945443-9945462 MsG0180000703.01.T01:CDS 45.0%
! TAGAGCTCCTTTTCTCTCCA+CGG - Chr1:9944904-9944923 None:intergenic 45.0%
! TGGAAAGCATAAAAGGGACG+AGG + Chr1:9944550-9944569 MsG0180000703.01.T01:intron 45.0%
! TGGAGAAAGAAAAGCGCAGA+AGG + Chr1:9945365-9945384 MsG0180000703.01.T01:CDS 45.0%
!! AGAAAAGGAGCTCTAGGGAT+GGG + Chr1:9944909-9944928 MsG0180000703.01.T01:intron 45.0%
!! ATGATGGGCATGGAGAAAGA+AGG + Chr1:9945395-9945414 MsG0180000703.01.T01:CDS 45.0%
!! CTACAGGAAGAAAGCACTTG+AGG + Chr1:9944654-9944673 MsG0180000703.01.T01:intron 45.0%
!! GAAAAGAAGCTCTAGAGACG+GGG + Chr1:9944838-9944857 MsG0180000703.01.T01:intron 45.0%
!! TAGTGCCAAGGTTGATGGAT+TGG + Chr1:9944093-9944112 MsG0180000703.01.T01:CDS 45.0%
AAGAGCTTAAGGGATGAGGG+TGG + Chr1:9944949-9944968 MsG0180000703.01.T01:intron 50.0%
AAGGAACACCTTGAGGGATG+GGG + Chr1:9944731-9944750 MsG0180000703.01.T01:intron 50.0%
ACTCTGGTAGAGGCAGTGTT+AGG + Chr1:9943866-9943885 MsG0180000703.01.T01:CDS 50.0%
AGATGGTCGTGAGAGAGAGA+AGG + Chr1:9944609-9944628 MsG0180000703.01.T01:intron 50.0%
AGCGAAGAGAAGTGAGCCAA+AGG + Chr1:9944027-9944046 MsG0180000703.01.T01:CDS 50.0%
CAAGGGATGAGGATGTTGTG+GGG + Chr1:9945311-9945330 MsG0180000703.01.T01:CDS 50.0%
CTCAAGGGATGAGGATGTTG+TGG + Chr1:9945309-9945328 MsG0180000703.01.T01:CDS 50.0%
GAAGAGAAGTGAGCCAAAGG+AGG + Chr1:9944030-9944049 MsG0180000703.01.T01:CDS 50.0%
GAAGGAACACCTTGAGGGAT+GGG + Chr1:9944730-9944749 MsG0180000703.01.T01:intron 50.0%
GAGAAAGAGCTCAAGGGATG+AGG + Chr1:9945300-9945319 MsG0180000703.01.T01:CDS 50.0%
GTGGAGAGAAAAGGAGCTCT+AGG + Chr1:9944903-9944922 MsG0180000703.01.T01:intron 50.0%
TAGTGAAACTGGCAGCAGTG+AGG + Chr1:9943957-9943976 MsG0180000703.01.T01:CDS 50.0%
TGCAGGAAGGAACACCTTGA+GGG + Chr1:9944725-9944744 MsG0180000703.01.T01:intron 50.0%
TTGAGGATGAACGTGCAGGA+AGG + Chr1:9944712-9944731 MsG0180000703.01.T01:intron 50.0%
! AAGCTTTTCTTCTCTCCCGG+CGG - Chr1:9944580-9944599 None:intergenic 50.0%
! CGCAGAAGGGATGATGATGA+TGG + Chr1:9945379-9945398 MsG0180000703.01.T01:CDS 50.0%
! GAGAGAGAGAAGGCATGGAA+AGG + Chr1:9944619-9944638 MsG0180000703.01.T01:intron 50.0%
! GTGGGGAAAGAAAGCACAGA+GGG + Chr1:9945328-9945347 MsG0180000703.01.T01:CDS 50.0%
! TGAGGAGTGATAGTGATCGC+AGG + Chr1:9943975-9943994 MsG0180000703.01.T01:CDS 50.0%
! TGGGGAAAGAAAGCACAGAG+GGG + Chr1:9945329-9945348 MsG0180000703.01.T01:CDS 50.0%
! TGTGGGGAAAGAAAGCACAG+AGG + Chr1:9945327-9945346 MsG0180000703.01.T01:CDS 50.0%
!! AGAGAAGAGCTCTAGGGATG+TGG + Chr1:9945013-9945032 MsG0180000703.01.T01:intron 50.0%
!! AGGGATGATGATGATGGGCA+TGG + Chr1:9945385-9945404 MsG0180000703.01.T01:CDS 50.0%
!! GAAAAGGAGCTCTAGGGATG+GGG + Chr1:9944910-9944929 MsG0180000703.01.T01:intron 50.0%
!! GAGAAAAGGAGCTCTAGGGA+TGG + Chr1:9944908-9944927 MsG0180000703.01.T01:intron 50.0%
!! GAGAAGAGCTCTAGGGATGT+GGG + Chr1:9945014-9945033 MsG0180000703.01.T01:intron 50.0%
CCCTAGAGCTCTTCTCTCCT+CGG - Chr1:9945010-9945029 None:intergenic 55.0%
CCGAGGAGAGAAGAGCTCTA+GGG + Chr1:9945007-9945026 MsG0180000703.01.T01:intron 55.0%
GCAATGGCCGTGGAGAGAAA+AGG + Chr1:9944894-9944913 MsG0180000703.01.T01:intron 55.0%
GGAAGGAACACCTTGAGGGA+TGG + Chr1:9944729-9944748 MsG0180000703.01.T01:intron 55.0%
GGCAGTGTTAGGCATGCTTC+AGG + Chr1:9943877-9943896 MsG0180000703.01.T01:CDS 55.0%
GTCGTGAGAGAGAGAAGGCA+TGG + Chr1:9944614-9944633 MsG0180000703.01.T01:intron 55.0%
GTGCAGGAAGGAACACCTTG+AGG + Chr1:9944724-9944743 MsG0180000703.01.T01:intron 55.0%
TTAAGGGATGAGGGTGGCAG+AGG + Chr1:9944778-9944797 MsG0180000703.01.T01:intron 55.0%
TTAAGGGATGGCAATGGCCG+TGG + Chr1:9944884-9944903 MsG0180000703.01.T01:intron 55.0%
AAAGGGACGAGGAAGACCGC+CGG + Chr1:9944561-9944580 MsG0180000703.01.T01:intron 60.0%
GCCGAGGAGAGAAGAGCTCT+AGG + Chr1:9945006-9945025 MsG0180000703.01.T01:intron 60.0%
AAGGGACGAGGAAGACCGCC+GGG + Chr1:9944562-9944581 MsG0180000703.01.T01:intron 65.0%
!! CTCTCGGATGGTGATGGCCG+AGG + Chr1:9944990-9945009 MsG0180000703.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 9943848 9945471 9943848 ID=MsG0180000703.01;Name=MsG0180000703.01
Chr1 mRNA 9943848 9945471 9943848 ID=MsG0180000703.01.T01;Parent=MsG0180000703.01;Name=MsG0180000703.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|1|1|3|0|265
Chr1 exon 9943848 9944153 9943848 ID=MsG0180000703.01.T01:exon:1727;Parent=MsG0180000703.01.T01
Chr1 exon 9944244 9944419 9944244 ID=MsG0180000703.01.T01:exon:1726;Parent=MsG0180000703.01.T01
Chr1 exon 9945156 9945471 9945156 ID=MsG0180000703.01.T01:exon:1725;Parent=MsG0180000703.01.T01
Chr1 CDS 9943848 9944153 9943848 ID=MsG0180000703.01.T01:cds;Parent=MsG0180000703.01.T01
Chr1 CDS 9944244 9944419 9944244 ID=MsG0180000703.01.T01:cds;Parent=MsG0180000703.01.T01
Chr1 CDS 9945156 9945471 9945156 ID=MsG0180000703.01.T01:cds;Parent=MsG0180000703.01.T01
Gene Sequence

>MsG0180000703.01.T01

ATGGTTCTATTGATGCAGACTCTGGTAGAGGCAGTGTTAGGCATGCTTCAGGACAAGACAAACATGTTAAAAGGCGGACATACTCTTCCTCTGATGAGAGTAGCAGTGATAGTGAAACTGGCAGCAGTGAGGAGTGATAGTGATCGCAGGTATGGAAGAACTAGAAAAGTTGGGTCTGTAGCGAAGAGAAGTGAGCCAAAGGAGGAAATAAATGACAGAGGTAATGCTGCAGGAAAAGGGAAAAATAGTGCCAAGGTTGATGGATTGGATTCTTTAAGAAAATCATATGGGGAGATTATAAAGAGGCATGATGGACAAGATAGGAAGTTTGGTAAAACAGAGTCTGAGTCAAAATCTCGAATTTATCAAAATGAAAATGAAGAAAGAGATGGTTATTCTAAATCAGCTAGGATCAGAGGGAATGATAATGAAACTTCTGATCAGAGAGGCAGAAATTATAACAGGGATGTTGATCACAATCTAAGCACAAAACAGAAGGATGGGGATGGCAGTGTAGAAATAAAGAACTCTAGGTATGAGGATGATCGCAAAGAAAGGAAGAACTCAAGGGAAGAGGATGACCGCCAAAGAAAGAAAGAATCAAGGGAAGATGATGATCACAGAGTGAGAAAGAGCTCAAGGGATGAGGATGTTGTGGGGAAAGAAAGCACAGAGGGGATGATGAGTATCATGGAGAAAGAAAAGCGCAGAAGGGATGATGATGATGGGCATGGAGAAAGAAGGCATTATAGAAGGGATGATGATGATCGTGGAGAAAGAAAGCACAGAAGGGAGTAG

Protein sequence

>MsG0180000703.01.T01

MVLLMQTLVEAVLGMLQDKTNMLKGGHTLPLMRVAVIVKLAAVRSDSDRRYGRTRKVGSVAKRSEPKEEINDRGNAAGKGKNSAKVDGLDSLRKSYGEIIKRHDGQDRKFGKTESESKSRIYQNENEERDGYSKSARIRGNDNETSDQRGRNYNRDVDHNLSTKQKDGDGSVEIKNSRYEDDRKERKNSREEDDRQRKKESREDDDHRVRKSSRDEDVVGKESTEGMMSIMEKEKRRRDDDDGHGERRHYRRDDDDRGERKHRRE*