Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022543.01.T01 | XP_013457136.1 | 98.974 | 195 | 2 | 0 | 9 | 203 | 10 | 204 | 3.89E-136 | 389 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022543.01.T01 | Q6NQE2 | 82.09 | 201 | 36 | 0 | 1 | 201 | 1 | 201 | 3.00E-119 | 339 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022543.01.T01 | A0A072UN88 | 98.974 | 195 | 2 | 0 | 9 | 203 | 10 | 204 | 1.86e-136 | 389 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180005417.01 | MsG0480022543.01 | 0.828319 | 9.602077e-55 | 9.510689e-52 |
| MsG0180005757.01 | MsG0480022543.01 | 0.815321 | 9.815292e-52 | 6.745448e-49 |
| MsG0480022543.01 | MsG0480023303.01 | 0.812500 | 4.108417e-51 | 2.616569e-48 |
| MsG0480022543.01 | MsG0580024398.01 | 0.800337 | 1.511072e-48 | 7.018126e-46 |
| MsG0480022543.01 | MsG0680031683.01 | 0.801120 | 1.045780e-48 | 4.954557e-46 |
| MsG0480022543.01 | MsG0680034333.01 | 0.809222 | 2.105009e-50 | 1.228853e-47 |
| MsG0480022543.01 | MsG0780036726.01 | 0.814782 | 1.293009e-51 | 8.756587e-49 |
| MsG0480022543.01 | MsG0780037182.01 | 0.800703 | 1.272335e-48 | 5.964092e-46 |
| MsG0480022543.01 | MsG0780039619.01 | 0.832436 | 9.466119e-56 | 1.057960e-52 |
| MsG0480022543.01 | MsG0780039978.01 | 0.804064 | 2.584050e-49 | 1.319681e-46 |
| MsG0480022543.01 | MsG0780041180.01 | 0.811483 | 6.844336e-51 | 4.241829e-48 |
| MsG0480022543.01 | MsG0880043550.01 | 0.821020 | 5.040550e-53 | 4.053835e-50 |
| MsG0380018051.01 | MsG0480022543.01 | 0.816142 | 6.440610e-52 | 4.527008e-49 |
| MsG0280007686.01 | MsG0480022543.01 | 0.814157 | 1.777342e-51 | 1.183501e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022543.01.T01 | MTR_4g091900 | 98.974 | 195 | 2 | 0 | 9 | 203 | 10 | 204 | 4.71e-140 | 389 |
| MsG0480022543.01.T01 | MTR_4g091900 | 98.958 | 192 | 2 | 0 | 12 | 203 | 1 | 192 | 4.83e-137 | 381 |
| MsG0480022543.01.T01 | MTR_2g081810 | 81.000 | 200 | 38 | 0 | 1 | 200 | 1 | 200 | 5.08e-119 | 336 |
| MsG0480022543.01.T01 | MTR_8g466030 | 79.500 | 200 | 41 | 0 | 1 | 200 | 1 | 200 | 7.20e-116 | 328 |
| MsG0480022543.01.T01 | MTR_2g011080 | 75.253 | 198 | 49 | 0 | 6 | 203 | 1 | 198 | 8.54e-109 | 310 |
| MsG0480022543.01.T01 | MTR_2g011080 | 73.399 | 203 | 54 | 0 | 1 | 203 | 1 | 203 | 1.16e-107 | 307 |
| MsG0480022543.01.T01 | MTR_5g070030 | 69.430 | 193 | 58 | 1 | 9 | 200 | 10 | 202 | 3.69e-96 | 278 |
| MsG0480022543.01.T01 | MTR_5g019620 | 63.366 | 202 | 73 | 1 | 2 | 202 | 51 | 252 | 1.51e-88 | 261 |
| MsG0480022543.01.T01 | MTR_4g069250 | 64.322 | 199 | 70 | 1 | 2 | 199 | 50 | 248 | 7.22e-88 | 259 |
| MsG0480022543.01.T01 | MTR_2g011080 | 74.342 | 152 | 39 | 0 | 52 | 203 | 1 | 152 | 4.73e-80 | 236 |
| MsG0480022543.01.T01 | MTR_4g091890 | 90.833 | 120 | 7 | 1 | 84 | 203 | 1 | 116 | 8.60e-74 | 218 |
| MsG0480022543.01.T01 | MTR_8g466080 | 79.310 | 116 | 24 | 0 | 85 | 200 | 1 | 116 | 6.70e-63 | 191 |
| MsG0480022543.01.T01 | MTR_8g466110 | 56.452 | 124 | 28 | 3 | 52 | 175 | 1 | 98 | 1.19e-34 | 119 |
| MsG0480022543.01.T01 | MTR_8g466150 | 56.452 | 124 | 28 | 3 | 52 | 175 | 1 | 98 | 1.19e-34 | 119 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480022543.01.T01 | AT4G27270 | 82.090 | 201 | 36 | 0 | 1 | 201 | 1 | 201 | 3.05e-120 | 339 |
| MsG0480022543.01.T01 | AT5G54500 | 81.188 | 202 | 38 | 0 | 1 | 202 | 1 | 202 | 7.57e-120 | 338 |
| MsG0480022543.01.T01 | AT4G27270 | 84.737 | 190 | 29 | 0 | 12 | 201 | 1 | 190 | 3.32e-117 | 331 |
| MsG0480022543.01.T01 | AT4G27270 | 84.737 | 190 | 29 | 0 | 12 | 201 | 1 | 190 | 3.32e-117 | 331 |
| MsG0480022543.01.T01 | AT4G27270 | 86.000 | 150 | 21 | 0 | 52 | 201 | 1 | 150 | 1.26e-92 | 268 |
| MsG0480022543.01.T01 | AT5G54500 | 83.117 | 154 | 26 | 0 | 9 | 162 | 9 | 162 | 6.59e-92 | 269 |
| MsG0480022543.01.T01 | AT5G58800 | 65.285 | 193 | 66 | 1 | 9 | 200 | 10 | 202 | 1.17e-91 | 267 |
| MsG0480022543.01.T01 | AT5G58800 | 65.285 | 193 | 66 | 1 | 9 | 200 | 10 | 202 | 1.17e-91 | 267 |
| MsG0480022543.01.T01 | AT4G36750 | 65.657 | 198 | 67 | 1 | 3 | 199 | 73 | 270 | 1.44e-88 | 261 |
Find 79 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGGCTTCCCGACAAGATT+TGG | 0.247346 | 4:+73928072 | MsG0480022543.01.T01:CDS |
| TAAGTCAATCACACTTTATC+TGG | 0.285706 | 4:+73927417 | None:intergenic |
| TGCTCAGTTTAAAGCATTCT+TGG | 0.295404 | 4:+73928104 | MsG0480022543.01.T01:CDS |
| ACCTCCGCAGGCAGAGTTTC+AGG | 0.301695 | 4:-73927967 | None:intergenic |
| CTCTGCCTGCGGAGGTCGTT+GGG | 0.320468 | 4:+73927974 | MsG0480022543.01.T01:CDS |
| TGCTACTTTGATCCACGTTT+TGG | 0.332112 | 4:+73929058 | MsG0480022543.01.T01:three_prime_UTR |
| ATAATTGGCACATCACTCTT+TGG | 0.334809 | 4:-73928012 | None:intergenic |
| GAGGCTGATGGTTTGTTGCT+TGG | 0.342120 | 4:+73928054 | MsG0480022543.01.T01:CDS |
| TATAGCTTTCATAAGTCTTA+AGG | 0.342729 | 4:-73927520 | None:intergenic |
| AGCGCATCAGGTGTAATAAT+TGG | 0.347422 | 4:-73928027 | None:intergenic |
| CATCAGGGGAAGTACTTTGC+TGG | 0.357702 | 4:+73928757 | MsG0480022543.01.T01:CDS |
| TGGCGTACTCAGGCACTTGC+AGG | 0.358990 | 4:+73928144 | MsG0480022543.01.T01:CDS |
| GTGCCCATTGGTTACACATT+TGG | 0.364441 | 4:+73928622 | MsG0480022543.01.T01:CDS |
| GTTTGAGATGGAGAGCATAA+AGG | 0.387084 | 4:+73928654 | MsG0480022543.01.T01:CDS |
| ATAAAATAATTTATGTTGCT+TGG | 0.396774 | 4:+73927487 | MsG0480022543.01.T01:five_prime_UTR |
| TTTGAGATGGAGAGCATAAA+GGG | 0.400626 | 4:+73928655 | MsG0480022543.01.T01:CDS |
| TGCGGAGGTCGTTGGGAAGA+TGG | 0.403064 | 4:+73927981 | MsG0480022543.01.T01:CDS |
| GGGTGGTTCCCCATATGGTT+CGG | 0.423157 | 4:+73928675 | MsG0480022543.01.T01:CDS |
| AAAGCATTCTTGGATGCAAC+TGG | 0.423811 | 4:+73928114 | MsG0480022543.01.T01:CDS |
| TAATTAACATCTTATTCTGT+TGG | 0.429715 | 4:-73928879 | None:intergenic |
| GCGAAGGTTCCCGAACCATA+TGG | 0.433025 | 4:-73928685 | None:intergenic |
| ACAGCCTACCGAGTTGGAAT+TGG | 0.433561 | 4:+73928723 | MsG0480022543.01.T01:CDS |
| GGTGGTTCCCCATATGGTTC+GGG | 0.436267 | 4:+73928676 | MsG0480022543.01.T01:CDS |
| TCAGCCTCAGGTAGCGCATC+AGG | 0.442003 | 4:-73928039 | None:intergenic |
| TCTCGTGCCGTCTCCGGCGA+AGG | 0.448926 | 4:-73928701 | None:intergenic |
| GCGGAGGTCGTTGGGAAGAT+GGG | 0.453021 | 4:+73927982 | MsG0480022543.01.T01:CDS |
| ATAAAGGGTGGTTCCCCATA+TGG | 0.462146 | 4:+73928670 | MsG0480022543.01.T01:CDS |
| CCCGACAAGATTTGGAATGA+TGG | 0.467275 | 4:+73928080 | MsG0480022543.01.T01:CDS |
| ATTGGTTACACATTTGGTGC+TGG | 0.468517 | 4:+73928628 | MsG0480022543.01.T01:CDS |
| ATTGGCTCAAGCTTTCCATC+AGG | 0.473009 | 4:+73928741 | MsG0480022543.01.T01:CDS |
| CGAAGGTTCCCGAACCATAT+GGG | 0.473122 | 4:-73928684 | None:intergenic |
| CAAACACTCTTTATGTATAG+AGG | 0.478719 | 4:-73928818 | None:intergenic |
| TATGGTTCGGGAACCTTCGC+CGG | 0.481405 | 4:+73928688 | MsG0480022543.01.T01:CDS |
| GAACTCACGGTGTAGTCTCT+TGG | 0.486876 | 4:-73928212 | None:intergenic |
| AGGCTGTCTCGTGCCGTCTC+CGG | 0.489257 | 4:-73928707 | None:intergenic |
| AAAATTAAAAGTTCTAATGA+TGG | 0.490035 | 4:-73929214 | None:intergenic |
| CCATCATTCCAAATCTTGTC+GGG | 0.494553 | 4:-73928080 | None:intergenic |
| TTTAGTTACTATTCTATGTA+CGG | 0.496466 | 4:+73927608 | MsG0480022543.01.T01:CDS |
| GCCATCATTCCAAATCTTGT+CGG | 0.505362 | 4:-73928081 | None:intergenic |
| CAAATTCATGTAACATCACT+AGG | 0.507942 | 4:-73927563 | None:intergenic |
| AAAGGGGCGGCTTCCGTGGA+AGG | 0.511585 | 4:+73927662 | MsG0480022543.01.T01:CDS |
| ATCTTCCCAACGACCTCCGC+AGG | 0.515536 | 4:-73927979 | None:intergenic |
| ACTCTGCCTGCGGAGGTCGT+TGG | 0.519015 | 4:+73927973 | MsG0480022543.01.T01:CDS |
| TCGGGAACCTTCGCCGGAGA+CGG | 0.520100 | 4:+73928694 | MsG0480022543.01.T01:CDS |
| ATTGGCACATCACTCTTTGG+AGG | 0.535259 | 4:-73928009 | None:intergenic |
| CAGTAGGCACAAGAAGCAAT+TGG | 0.535822 | 4:+73929035 | MsG0480022543.01.T01:three_prime_UTR |
| GCACCAAATGTGTAACCAAT+GGG | 0.537151 | 4:-73928625 | None:intergenic |
| AGTAGAAGCAAAGCTATGGC+AGG | 0.545320 | 4:+73927685 | MsG0480022543.01.T01:CDS |
| AGCAACAAACCATCAGCCTC+AGG | 0.546743 | 4:-73928051 | None:intergenic |
| CACGAGACAGCCTACCGAGT+TGG | 0.547705 | 4:+73928717 | MsG0480022543.01.T01:CDS |
| TTTAAAAGGGGCGGCTTCCG+TGG | 0.548946 | 4:+73927658 | MsG0480022543.01.T01:CDS |
| TGGATGCAACTGGTGGCCTA+TGG | 0.551588 | 4:+73928124 | MsG0480022543.01.T01:CDS |
| GCACTTGCAGGAAAGCCTGC+AGG | 0.551589 | 4:+73928156 | MsG0480022543.01.T01:CDS |
| GTGCTGTAAAAGATTCCTGC+AGG | 0.556948 | 4:-73928171 | None:intergenic |
| CTTTGCTTCTACTCCTTCCA+CGG | 0.562351 | 4:-73927675 | None:intergenic |
| ATCACTCAGCTTGCTCACCA+TGG | 0.564969 | 4:+73928589 | MsG0480022543.01.T01:CDS |
| AGCACCAAATGTGTAACCAA+TGG | 0.574155 | 4:-73928626 | None:intergenic |
| TGGTGCTGGTATGTTTGAGA+TGG | 0.575960 | 4:+73928642 | MsG0480022543.01.T01:CDS |
| AAGGAGTAGAAGCAAAGCTA+TGG | 0.577868 | 4:+73927681 | MsG0480022543.01.T01:CDS |
| TGGTGGCCTATGGCGTACTC+AGG | 0.578013 | 4:+73928134 | MsG0480022543.01.T01:CDS |
| CAGCAAAGTACTTCCCCTGA+TGG | 0.579078 | 4:-73928756 | None:intergenic |
| TGGCTCAAGCTTTCCATCAG+GGG | 0.583615 | 4:+73928743 | MsG0480022543.01.T01:CDS |
| TTGGCTCAAGCTTTCCATCA+GGG | 0.591341 | 4:+73928742 | MsG0480022543.01.T01:CDS |
| GGCATTGCAAAGAAGCTCAA+AGG | 0.592964 | 4:+73928778 | MsG0480022543.01.T01:CDS |
| AGCACTGGTTCTCAAGGAGG+AGG | 0.599229 | 4:+73928189 | MsG0480022543.01.T01:CDS |
| CAAGTGCCTGAGTACGCCAT+AGG | 0.599625 | 4:-73928140 | None:intergenic |
| ATGGTGAGCAAGCTGAGTGA+TGG | 0.600815 | 4:-73928587 | None:intergenic |
| TACAGCACTGGTTCTCAAGG+AGG | 0.602179 | 4:+73928186 | MsG0480022543.01.T01:CDS |
| GAGGTCGTTGGGAAGATGGG+AGG | 0.615091 | 4:+73927985 | MsG0480022543.01.T01:CDS |
| ACCTGAAACTCTGCCTGCGG+AGG | 0.615512 | 4:+73927966 | MsG0480022543.01.T01:CDS |
| GAAGGTTCCCGAACCATATG+GGG | 0.617327 | 4:-73928683 | None:intergenic |
| TGAGCCAATTCCAACTCGGT+AGG | 0.619105 | 4:-73928727 | None:intergenic |
| GATGCGCTACCTGAGGCTGA+TGG | 0.631007 | 4:+73928042 | MsG0480022543.01.T01:CDS |
| AGCTTGAGCCAATTCCAACT+CGG | 0.640803 | 4:-73928731 | None:intergenic |
| GCATTCTTGGATGCAACTGG+TGG | 0.654481 | 4:+73928117 | MsG0480022543.01.T01:CDS |
| TACACCTGATGCGCTACCTG+AGG | 0.657213 | 4:+73928035 | MsG0480022543.01.T01:CDS |
| ACATCACCACTTCCAAAACG+TGG | 0.674908 | 4:-73929070 | None:intergenic |
| GGTACCTGAAACTCTGCCTG+CGG | 0.684253 | 4:+73927963 | MsG0480022543.01.T01:intron |
| GAGATGGAGAGCATAAAGGG+TGG | 0.732219 | 4:+73928658 | MsG0480022543.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTTATTTGAATTTATATAT+TGG | - | Chr4:73928512-73928531 | None:intergenic | 10.0% |
| !! | ATATATAAACAGTTTAAATT+TGG | - | Chr4:73928423-73928442 | None:intergenic | 10.0% |
| !!! | TTATTTTGAACATTTTAATT+TGG | - | Chr4:73927811-73927830 | None:intergenic | 10.0% |
| !! | ACTGTTTATATATAAGTTAT+AGG | + | Chr4:73928430-73928449 | MsG0480022543.01.T01:intron | 15.0% |
| !! | ATAAAATAATTTATGTTGCT+TGG | + | Chr4:73927487-73927506 | MsG0480022543.01.T01:five_prime_UTR | 15.0% |
| !!! | CTTTTTCTTTAATTAAGAAA+CGG | - | Chr4:73928268-73928287 | None:intergenic | 15.0% |
| !!! | TTTTTCTTTAATTAAGAAAC+GGG | - | Chr4:73928267-73928286 | None:intergenic | 15.0% |
| !! | AATTACAAGATCTAATAGAT+TGG | - | Chr4:73927885-73927904 | None:intergenic | 20.0% |
| !! | AGATGTTAATTAAAAAAGAG+AGG | + | Chr4:73928890-73928909 | MsG0480022543.01.T01:three_prime_UTR | 20.0% |
| !! | CGTTTCTTAATTAAAGAAAA+AGG | + | Chr4:73928266-73928285 | MsG0480022543.01.T01:intron | 20.0% |
| !! | TAATTAACATCTTATTCTGT+TGG | - | Chr4:73928882-73928901 | None:intergenic | 20.0% |
| !! | TCAAATAAGTTAATCCAAAT+AGG | + | Chr4:73928522-73928541 | MsG0480022543.01.T01:intron | 20.0% |
| !! | TTTAGTTACTATTCTATGTA+CGG | + | Chr4:73927608-73927627 | MsG0480022543.01.T01:CDS | 20.0% |
| ! | AATTATCATCTGATACGTAT+AGG | + | Chr4:73927942-73927961 | MsG0480022543.01.T01:intron | 25.0% |
| ! | ACCATCTTAAAGATATCTAA+TGG | - | Chr4:73927834-73927853 | None:intergenic | 25.0% |
| ! | AGCAAACAAGCTTAAATATT+TGG | + | Chr4:73928312-73928331 | MsG0480022543.01.T01:intron | 25.0% |
| ! | TATAGCTTTCATAAGTCTTA+AGG | - | Chr4:73927523-73927542 | None:intergenic | 25.0% |
| ! | TCAATCAATCTTTACATGTT+TGG | + | Chr4:73927775-73927794 | MsG0480022543.01.T01:intron | 25.0% |
| ! | TGAAATCAGAAAATCAATCA+GGG | - | Chr4:73928548-73928567 | None:intergenic | 25.0% |
| ! | TTGAAATCAGAAAATCAATC+AGG | - | Chr4:73928549-73928568 | None:intergenic | 25.0% |
| !! | ACCATTAGATATCTTTAAGA+TGG | + | Chr4:73927830-73927849 | MsG0480022543.01.T01:intron | 25.0% |
| !! | GATGATAATTTTGTAAATGC+AGG | - | Chr4:73927932-73927951 | None:intergenic | 25.0% |
| !!! | TAGCTCAAGAGATTTTAAAA+GGG | + | Chr4:73927645-73927664 | MsG0480022543.01.T01:CDS | 25.0% |
| !!! | TCTGATACTTTTTTGTATCA+TGG | + | Chr4:73929118-73929137 | MsG0480022543.01.T01:three_prime_UTR | 25.0% |
| AGATCTAATAGATTGGATTG+CGG | - | Chr4:73927878-73927897 | None:intergenic | 30.0% | |
| CAAACACTCTTTATGTATAG+AGG | - | Chr4:73928821-73928840 | None:intergenic | 30.0% | |
| CAAATTCATGTAACATCACT+AGG | - | Chr4:73927566-73927585 | None:intergenic | 30.0% | |
| TTCTGATTTCAAAATTCTGC+AGG | + | Chr4:73928557-73928576 | MsG0480022543.01.T01:intron | 30.0% | |
| ! | ACATACCACATTTTCTCTTT+AGG | + | Chr4:73927733-73927752 | MsG0480022543.01.T01:intron | 30.0% |
| ! | CATACCACATTTTCTCTTTA+GGG | + | Chr4:73927734-73927753 | MsG0480022543.01.T01:intron | 30.0% |
| ! | CTAGCTCAAGAGATTTTAAA+AGG | + | Chr4:73927644-73927663 | MsG0480022543.01.T01:CDS | 30.0% |
| ! | TCTTGTAATTCGAAAAGCAT+TGG | + | Chr4:73927895-73927914 | MsG0480022543.01.T01:intron | 30.0% |
| ! | TTGGTAGTAATAAGTCTTTC+TGG | + | Chr4:73927708-73927727 | MsG0480022543.01.T01:intron | 30.0% |
| !! | AGCTCAAGAGATTTTAAAAG+GGG | + | Chr4:73927646-73927665 | MsG0480022543.01.T01:CDS | 30.0% |
| !! | CTTGTAATTCGAAAAGCATT+GGG | + | Chr4:73927896-73927915 | MsG0480022543.01.T01:intron | 30.0% |
| !!! | ACACTTTATCTGGCTTTTAT+TGG | + | Chr4:73927427-73927446 | MsG0480022543.01.T01:five_prime_UTR | 30.0% |
| !!! | ACTTTTTTGTATCATGGTCT+TGG | + | Chr4:73929124-73929143 | MsG0480022543.01.T01:three_prime_UTR | 30.0% |
| !!! | CTTTTTTGTATCATGGTCTT+GGG | + | Chr4:73929125-73929144 | MsG0480022543.01.T01:three_prime_UTR | 30.0% |
| AAAATCAATCAGGGCCTATT+TGG | - | Chr4:73928539-73928558 | None:intergenic | 35.0% | |
| AAACAAAACTGAGCGAGATT+CGG | - | Chr4:73928238-73928257 | None:intergenic | 35.0% | |
| AGTTCCCTAAAGAGAAAATG+TGG | - | Chr4:73927741-73927760 | None:intergenic | 35.0% | |
| ATAATTGGCACATCACTCTT+TGG | - | Chr4:73928015-73928034 | None:intergenic | 35.0% | |
| ! | GTTTTCATTGAGATCACAGT+AGG | + | Chr4:73929019-73929038 | MsG0480022543.01.T01:three_prime_UTR | 35.0% |
| ! | TGCTCAGTTTAAAGCATTCT+TGG | + | Chr4:73928104-73928123 | MsG0480022543.01.T01:CDS | 35.0% |
| ! | TTTGAGATGGAGAGCATAAA+GGG | + | Chr4:73928655-73928674 | MsG0480022543.01.T01:CDS | 35.0% |
| !! | TCAAGAGATTTTAAAAGGGG+CGG | + | Chr4:73927649-73927668 | MsG0480022543.01.T01:CDS | 35.0% |
| AACAAAACTGAGCGAGATTC+GGG | - | Chr4:73928237-73928256 | None:intergenic | 40.0% | |
| AAGGAGTAGAAGCAAAGCTA+TGG | + | Chr4:73927681-73927700 | MsG0480022543.01.T01:CDS | 40.0% | |
| AGCACCAAATGTGTAACCAA+TGG | - | Chr4:73928629-73928648 | None:intergenic | 40.0% | |
| AGCGCATCAGGTGTAATAAT+TGG | - | Chr4:73928030-73928049 | None:intergenic | 40.0% | |
| CCATCATTCCAAATCTTGTC+GGG | - | Chr4:73928083-73928102 | None:intergenic | 40.0% | |
| GCACCAAATGTGTAACCAAT+GGG | - | Chr4:73928628-73928647 | None:intergenic | 40.0% | |
| GCCATCATTCCAAATCTTGT+CGG | - | Chr4:73928084-73928103 | None:intergenic | 40.0% | |
| TCTAATAGATTGGATTGCGG+AGG | - | Chr4:73927875-73927894 | None:intergenic | 40.0% | |
| TGGGCACAAAAATCATTCCA+TGG | - | Chr4:73928609-73928628 | None:intergenic | 40.0% | |
| ! | AAAGCATTCTTGGATGCAAC+TGG | + | Chr4:73928114-73928133 | MsG0480022543.01.T01:CDS | 40.0% |
| ! | GGAATGATTTTTGTGCCCAT+TGG | + | Chr4:73928610-73928629 | MsG0480022543.01.T01:CDS | 40.0% |
| ! | GTTTGAGATGGAGAGCATAA+AGG | + | Chr4:73928654-73928673 | MsG0480022543.01.T01:CDS | 40.0% |
| !! | ATTGGTTACACATTTGGTGC+TGG | + | Chr4:73928628-73928647 | MsG0480022543.01.T01:CDS | 40.0% |
| !!! | CTCGCTCAGTTTTGTTTTGA+AGG | + | Chr4:73928241-73928260 | MsG0480022543.01.T01:intron | 40.0% |
| !!! | TGCTACTTTGATCCACGTTT+TGG | + | Chr4:73929058-73929077 | MsG0480022543.01.T01:three_prime_UTR | 40.0% |
| !!! | TTTGATCCACGTTTTGGAAG+TGG | + | Chr4:73929064-73929083 | MsG0480022543.01.T01:three_prime_UTR | 40.0% |
| !!! | TTTTACAGCACTGGTTCTCA+AGG | + | Chr4:73928183-73928202 | MsG0480022543.01.T01:CDS | 40.0% |
| AATAGATTGGATTGCGGAGG+AGG | - | Chr4:73927872-73927891 | None:intergenic | 45.0% | |
| ACATCACCACTTCCAAAACG+TGG | - | Chr4:73929073-73929092 | None:intergenic | 45.0% | |
| AGCTTGAGCCAATTCCAACT+CGG | - | Chr4:73928734-73928753 | None:intergenic | 45.0% | |
| AGTAGAAGCAAAGCTATGGC+AGG | + | Chr4:73927685-73927704 | MsG0480022543.01.T01:CDS | 45.0% | |
| ATAAAGGGTGGTTCCCCATA+TGG | + | Chr4:73928670-73928689 | MsG0480022543.01.T01:CDS | 45.0% | |
| ATAGATTGGATTGCGGAGGA+GGG | - | Chr4:73927871-73927890 | None:intergenic | 45.0% | |
| ATTGGCACATCACTCTTTGG+AGG | - | Chr4:73928012-73928031 | None:intergenic | 45.0% | |
| CAGTAGGCACAAGAAGCAAT+TGG | + | Chr4:73929035-73929054 | MsG0480022543.01.T01:three_prime_UTR | 45.0% | |
| CTTTGCTTCTACTCCTTCCA+CGG | - | Chr4:73927678-73927697 | None:intergenic | 45.0% | |
| GGCATTGCAAAGAAGCTCAA+AGG | + | Chr4:73928778-73928797 | MsG0480022543.01.T01:CDS | 45.0% | |
| GTGCTGTAAAAGATTCCTGC+AGG | - | Chr4:73928174-73928193 | None:intergenic | 45.0% | |
| TTGGCTCAAGCTTTCCATCA+GGG | + | Chr4:73928742-73928761 | MsG0480022543.01.T01:CDS | 45.0% | |
| ! | ATTGGCTCAAGCTTTCCATC+AGG | + | Chr4:73928741-73928760 | MsG0480022543.01.T01:CDS | 45.0% |
| ! | CCCGACAAGATTTGGAATGA+TGG | + | Chr4:73928080-73928099 | MsG0480022543.01.T01:CDS | 45.0% |
| ! | GCAGGAATCTTTTACAGCAC+TGG | + | Chr4:73928174-73928193 | MsG0480022543.01.T01:CDS | 45.0% |
| ! | GTGCCCATTGGTTACACATT+TGG | + | Chr4:73928622-73928641 | MsG0480022543.01.T01:CDS | 45.0% |
| !! | TGGTGCTGGTATGTTTGAGA+TGG | + | Chr4:73928642-73928661 | MsG0480022543.01.T01:CDS | 45.0% |
| AGCAACAAACCATCAGCCTC+AGG | - | Chr4:73928054-73928073 | None:intergenic | 50.0% | |
| ATGGTGAGCAAGCTGAGTGA+TGG | - | Chr4:73928590-73928609 | None:intergenic | 50.0% | |
| CGAAGGTTCCCGAACCATAT+GGG | - | Chr4:73928687-73928706 | None:intergenic | 50.0% | |
| CTTGGCTTCCCGACAAGATT+TGG | + | Chr4:73928072-73928091 | MsG0480022543.01.T01:CDS | 50.0% | |
| GAACTCACGGTGTAGTCTCT+TGG | - | Chr4:73928215-73928234 | None:intergenic | 50.0% | |
| GAAGCAAAGCTATGGCAGGT+TGG | + | Chr4:73927689-73927708 | MsG0480022543.01.T01:intron | 50.0% | |
| GAAGGTTCCCGAACCATATG+GGG | - | Chr4:73928686-73928705 | None:intergenic | 50.0% | |
| GCATTCTTGGATGCAACTGG+TGG | + | Chr4:73928117-73928136 | MsG0480022543.01.T01:CDS | 50.0% | |
| TGAGCCAATTCCAACTCGGT+AGG | - | Chr4:73928730-73928749 | None:intergenic | 50.0% | |
| TGGCTCAAGCTTTCCATCAG+GGG | + | Chr4:73928743-73928762 | MsG0480022543.01.T01:CDS | 50.0% | |
| ! | ACAGCCTACCGAGTTGGAAT+TGG | + | Chr4:73928723-73928742 | MsG0480022543.01.T01:CDS | 50.0% |
| ! | ATCACTCAGCTTGCTCACCA+TGG | + | Chr4:73928589-73928608 | MsG0480022543.01.T01:CDS | 50.0% |
| ! | CAGCAAAGTACTTCCCCTGA+TGG | - | Chr4:73928759-73928778 | None:intergenic | 50.0% |
| ! | GAGATGGAGAGCATAAAGGG+TGG | + | Chr4:73928658-73928677 | MsG0480022543.01.T01:CDS | 50.0% |
| ! | TTGCGGAGGAGGGTATAACT+TGG | - | Chr4:73927861-73927880 | None:intergenic | 50.0% |
| !! | CATCAGGGGAAGTACTTTGC+TGG | + | Chr4:73928757-73928776 | MsG0480022543.01.T01:CDS | 50.0% |
| !! | GAGGCTGATGGTTTGTTGCT+TGG | + | Chr4:73928054-73928073 | MsG0480022543.01.T01:CDS | 50.0% |
| !! | TACAGCACTGGTTCTCAAGG+AGG | + | Chr4:73928186-73928205 | MsG0480022543.01.T01:CDS | 50.0% |
| CAAGTGCCTGAGTACGCCAT+AGG | - | Chr4:73928143-73928162 | None:intergenic | 55.0% | |
| GAGCGAGATTCGGGAACTCA+CGG | - | Chr4:73928228-73928247 | None:intergenic | 55.0% | |
| GCGAAGGTTCCCGAACCATA+TGG | - | Chr4:73928688-73928707 | None:intergenic | 55.0% | |
| GGGTGGTTCCCCATATGGTT+CGG | + | Chr4:73928675-73928694 | MsG0480022543.01.T01:CDS | 55.0% | |
| GGTACCTGAAACTCTGCCTG+CGG | + | Chr4:73927963-73927982 | MsG0480022543.01.T01:intron | 55.0% | |
| GGTGGTTCCCCATATGGTTC+GGG | + | Chr4:73928676-73928695 | MsG0480022543.01.T01:CDS | 55.0% | |
| TACACCTGATGCGCTACCTG+AGG | + | Chr4:73928035-73928054 | MsG0480022543.01.T01:CDS | 55.0% | |
| TGGATGCAACTGGTGGCCTA+TGG | + | Chr4:73928124-73928143 | MsG0480022543.01.T01:CDS | 55.0% | |
| TTTAAAAGGGGCGGCTTCCG+TGG | + | Chr4:73927658-73927677 | MsG0480022543.01.T01:CDS | 55.0% | |
| ! | TATGGTTCGGGAACCTTCGC+CGG | + | Chr4:73928688-73928707 | MsG0480022543.01.T01:CDS | 55.0% |
| !! | AGCACTGGTTCTCAAGGAGG+AGG | + | Chr4:73928189-73928208 | MsG0480022543.01.T01:CDS | 55.0% |
| ACCTCCGCAGGCAGAGTTTC+AGG | - | Chr4:73927970-73927989 | None:intergenic | 60.0% | |
| ACCTGAAACTCTGCCTGCGG+AGG | + | Chr4:73927966-73927985 | MsG0480022543.01.T01:CDS | 60.0% | |
| ATCTTCCCAACGACCTCCGC+AGG | - | Chr4:73927982-73928001 | None:intergenic | 60.0% | |
| CACGAGACAGCCTACCGAGT+TGG | + | Chr4:73928717-73928736 | MsG0480022543.01.T01:CDS | 60.0% | |
| GAGGTCGTTGGGAAGATGGG+AGG | + | Chr4:73927985-73928004 | MsG0480022543.01.T01:CDS | 60.0% | |
| GATGCGCTACCTGAGGCTGA+TGG | + | Chr4:73928042-73928061 | MsG0480022543.01.T01:CDS | 60.0% | |
| GCACTTGCAGGAAAGCCTGC+AGG | + | Chr4:73928156-73928175 | MsG0480022543.01.T01:CDS | 60.0% | |
| GCGGAGGTCGTTGGGAAGAT+GGG | + | Chr4:73927982-73928001 | MsG0480022543.01.T01:CDS | 60.0% | |
| TCAGCCTCAGGTAGCGCATC+AGG | - | Chr4:73928042-73928061 | None:intergenic | 60.0% | |
| TGCGGAGGTCGTTGGGAAGA+TGG | + | Chr4:73927981-73928000 | MsG0480022543.01.T01:CDS | 60.0% | |
| TGGCGTACTCAGGCACTTGC+AGG | + | Chr4:73928144-73928163 | MsG0480022543.01.T01:CDS | 60.0% | |
| TGGTGGCCTATGGCGTACTC+AGG | + | Chr4:73928134-73928153 | MsG0480022543.01.T01:CDS | 60.0% | |
| AAAGGGGCGGCTTCCGTGGA+AGG | + | Chr4:73927662-73927681 | MsG0480022543.01.T01:CDS | 65.0% | |
| ACTCTGCCTGCGGAGGTCGT+TGG | + | Chr4:73927973-73927992 | MsG0480022543.01.T01:CDS | 65.0% | |
| AGGCTGTCTCGTGCCGTCTC+CGG | - | Chr4:73928710-73928729 | None:intergenic | 65.0% | |
| CTCTGCCTGCGGAGGTCGTT+GGG | + | Chr4:73927974-73927993 | MsG0480022543.01.T01:CDS | 65.0% | |
| TCGGGAACCTTCGCCGGAGA+CGG | + | Chr4:73928694-73928713 | MsG0480022543.01.T01:CDS | 65.0% | |
| TCTCGTGCCGTCTCCGGCGA+AGG | - | Chr4:73928704-73928723 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 73927418 | 73929228 | 73927418 | ID=MsG0480022543.01;Name=MsG0480022543.01 |
| Chr4 | mRNA | 73927418 | 73929228 | 73927418 | ID=MsG0480022543.01.T01;Parent=MsG0480022543.01;Name=MsG0480022543.01.T01;_AED=0.32;_eAED=0.32;_QI=172|1|1|1|1|1|3|418|203 |
| Chr4 | exon | 73927418 | 73927706 | 73927418 | ID=MsG0480022543.01.T01:exon:31405;Parent=MsG0480022543.01.T01 |
| Chr4 | exon | 73927964 | 73928226 | 73927964 | ID=MsG0480022543.01.T01:exon:31406;Parent=MsG0480022543.01.T01 |
| Chr4 | exon | 73928579 | 73929228 | 73928579 | ID=MsG0480022543.01.T01:exon:31407;Parent=MsG0480022543.01.T01 |
| Chr4 | five_prime_UTR | 73927418 | 73927589 | 73927418 | ID=MsG0480022543.01.T01:five_prime_utr;Parent=MsG0480022543.01.T01 |
| Chr4 | CDS | 73927590 | 73927706 | 73927590 | ID=MsG0480022543.01.T01:cds;Parent=MsG0480022543.01.T01 |
| Chr4 | CDS | 73927964 | 73928226 | 73927964 | ID=MsG0480022543.01.T01:cds;Parent=MsG0480022543.01.T01 |
| Chr4 | CDS | 73928579 | 73928810 | 73928579 | ID=MsG0480022543.01.T01:cds;Parent=MsG0480022543.01.T01 |
| Chr4 | three_prime_UTR | 73928811 | 73929228 | 73928811 | ID=MsG0480022543.01.T01:three_prime_utr;Parent=MsG0480022543.01.T01 |
| Gene Sequence |
| Protein sequence |
