AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480022629.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022629.01.T01 MTR_4g093980 99.041 417 4 0 10 426 29 445 0.0 855
MsG0480022629.01.T01 MTR_8g088620 79.808 416 84 0 10 425 29 444 0.0 708
MsG0480022629.01.T01 MTR_5g024150 28.425 292 172 11 48 308 119 404 4.46e-21 95.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022629.01.T01 AT5G09550 83.654 416 68 0 10 425 29 444 0.0 733
MsG0480022629.01.T01 AT3G59920 76.442 416 98 0 10 425 29 444 0.0 685
MsG0480022629.01.T01 AT2G44100 76.739 417 97 0 10 426 29 445 0.0 685
MsG0480022629.01.T01 AT2G44100 76.119 402 96 0 10 411 29 430 0.0 661
MsG0480022629.01.T01 AT3G06540 25.146 342 198 12 49 342 117 448 1.28e-20 94.7

Find 100 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATAGCTATTTAAGCGATTT+AGG 0.117749 4:+74854366 MsG0480022629.01.T01:intron
GATGATACAGTTGACTTTAT+TGG 0.182516 4:+74855587 MsG0480022629.01.T01:CDS
GGCACTGAAGTCACCTTTAA+TGG 0.213355 4:+74855047 MsG0480022629.01.T01:CDS
TTGTCCAAATGCAGCAAATA+TGG 0.234329 4:+74855557 MsG0480022629.01.T01:intron
CACAAACTTACCTTGCATTC+TGG 0.280608 4:-74856566 None:intergenic
TTCTCAAACAGACCCATTAA+AGG 0.296833 4:-74855060 None:intergenic
TGACAAGCCACCAGAGGAAT+TGG 0.304762 4:+74854394 MsG0480022629.01.T01:CDS
GTTGCCTTTGACACAATTCT+TGG 0.327533 4:+74854172 None:intergenic
GACACAATTCTTGGTAAATC+AGG 0.330577 4:+74854181 MsG0480022629.01.T01:CDS
ATAGCTATTTAAGCGATTTA+GGG 0.336658 4:+74854367 MsG0480022629.01.T01:intron
GATCATTAGCTTCATAATCT+TGG 0.340169 4:-74855113 None:intergenic
CCTTACATATATCCACTATA+TGG 0.373214 4:+74856398 MsG0480022629.01.T01:CDS
ATGGATCAAAATGACTACTA+TGG 0.385668 4:+74854212 MsG0480022629.01.T01:CDS
TCATCTTGATGACAGTTACT+TGG 0.390099 4:+74855625 MsG0480022629.01.T01:CDS
TATGATGGCCAATGGAGCTT+TGG 0.414944 4:+74854785 MsG0480022629.01.T01:CDS
AGTGCCTCAACATCTGTTGC+TGG 0.426848 4:-74855030 None:intergenic
GAGTCGTTAGTGTCTGGAAT+AGG 0.427675 4:-74857064 None:intergenic
TGTTTGAGAAGCGCCGGGCT+CGG 0.429684 4:+74855073 MsG0480022629.01.T01:CDS
TCATGTCAACATTGTATTCT+CGG 0.431332 4:-74854424 None:intergenic
TCTAGCAGATATACCTTGTC+AGG 0.432373 4:-74856862 None:intergenic
ATCAAGTCCTTCGTGAGACT+TGG 0.434472 4:-74855136 None:intergenic
CTGAACTTTAAAGCTGTAGA+TGG 0.445888 4:+74854843 MsG0480022629.01.T01:CDS
GAGCATAAGAGCAGCAGAAA+AGG 0.457022 4:-74857230 None:intergenic
GCACTGAAGTCACCTTTAAT+GGG 0.461818 4:+74855048 MsG0480022629.01.T01:CDS
GGTCCAAGGAGATCGATTCC+AGG 0.462358 4:-74857333 None:intergenic
GTGGTTTCAAAGTGTGTTGT+GGG 0.472100 4:-74857546 None:intergenic
CGGCTAGAGCCCAATTCCTC+TGG 0.476276 4:-74854404 None:intergenic
GAGTGAGAGTCGTTAGTGTC+TGG 0.477098 4:-74857070 None:intergenic
TGGGTCTGTTTGAGAAGCGC+CGG 0.477888 4:+74855067 MsG0480022629.01.T01:CDS
TCAGCTGTCTTGCTGTAACT+TGG 0.480690 4:-74855164 None:intergenic
ACCTTGTCAGGCAGATATGA+TGG 0.484809 4:-74856850 None:intergenic
CAAATGCAGCAAATATGGAT+TGG 0.489275 4:+74855562 MsG0480022629.01.T01:intron
GACAAGCCACCAGAGGAATT+GGG 0.489494 4:+74854395 MsG0480022629.01.T01:CDS
CCTCAGGTGGAATTGAAGCC+TGG 0.489518 4:+74857315 MsG0480022629.01.T01:CDS
AGCTGAGACTGACCAACCTC+AGG 0.491525 4:+74857299 MsG0480022629.01.T01:CDS
CATATATCCACTATATGGAC+TGG 0.492691 4:+74856403 MsG0480022629.01.T01:CDS
GCTCGGTTGAGTGCTGTGTA+TGG 0.493867 4:+74856521 MsG0480022629.01.T01:CDS
TAGGTAGAGTTTGACGCTGA+TGG 0.507482 4:+74856766 MsG0480022629.01.T01:intron
AAATGAAGAACTTCCGAGCC+CGG 0.511161 4:-74855086 None:intergenic
TGGTAGTTTATGATGGCCAA+TGG 0.511335 4:+74854777 MsG0480022629.01.T01:intron
ACCATCAGTAGCATGATCAT+TGG 0.514853 4:-74857400 None:intergenic
AAGCCTGGAATCGATCTCCT+TGG 0.519075 4:+74857330 MsG0480022629.01.T01:CDS
GCCATCGGTGTGACTTCAGA+TGG 0.519822 4:+74856793 MsG0480022629.01.T01:CDS
CTGTCCACAAAATCCTTAGC+TGG 0.520365 4:-74855653 None:intergenic
CTGCAGCACTTGCAGCACTC+AGG 0.521016 4:-74857798 None:intergenic
CCATATAGTGGATATATGTA+AGG 0.525515 4:-74856398 None:intergenic
AACTCTCCCAGTCCATATAG+TGG 0.528131 4:-74856410 None:intergenic
CACACGAACCAAAGCTCCAT+TGG 0.528527 4:-74854793 None:intergenic
AGGTAGAGTTTGACGCTGAT+GGG 0.530777 4:+74856767 MsG0480022629.01.T01:intron
TGTGGTTTCAAAGTGTGTTG+TGG 0.530952 4:-74857547 None:intergenic
ATCAAAATGACTACTATGGA+GGG 0.531635 4:+74854216 MsG0480022629.01.T01:CDS
ATCAGTAGCATGATCATTGG+TGG 0.535403 4:-74857397 None:intergenic
CCAGGCTTCAATTCCACCTG+AGG 0.541595 4:-74857315 None:intergenic
ATTCTGCCACAGAAGCAACT+TGG 0.552217 4:+74857103 MsG0480022629.01.T01:CDS
TCAAGTCCTTCGTGAGACTT+GGG 0.552859 4:-74855135 None:intergenic
TTTACCAAGAATTGTGTCAA+AGG 0.555886 4:-74854176 None:intergenic
ATCCAACAGGTTCAAAACGT+TGG 0.556173 4:+74857007 MsG0480022629.01.T01:intron
ATTACTGGAAGGCATTTGCT+CGG 0.557422 4:+74856504 MsG0480022629.01.T01:intron
TTGGTCAGTCTCAGCTTCTG+TGG 0.560618 4:-74857292 None:intergenic
TTACGACCAAGTTGCTTCTG+TGG 0.561237 4:-74857109 None:intergenic
CAGATGTACAGTAAGATCAC+TGG 0.563791 4:+74857585 MsG0480022629.01.T01:CDS
GCTTCAATTCCACCTGAGGT+TGG 0.567079 4:-74857311 None:intergenic
AACCTCCTTGAAAACGTGCA+AGG 0.567787 4:-74856373 None:intergenic
TTACTTGGATAAGCCAGCTA+AGG 0.567941 4:+74855640 MsG0480022629.01.T01:CDS
TCCATCTGAAGTCACACCGA+TGG 0.574997 4:-74856794 None:intergenic
GACGCTGATGGGAAAGCCAT+CGG 0.579371 4:+74856778 MsG0480022629.01.T01:CDS
TGGACTGGGAGAGTTGCCTC+AGG 0.580060 4:+74856418 MsG0480022629.01.T01:CDS
GGGTCTGTTTGAGAAGCGCC+GGG 0.581340 4:+74855068 MsG0480022629.01.T01:CDS
GTTCAGATACTTTGTAACAT+CGG 0.582634 4:-74854826 None:intergenic
TGGAAGCTTTGTGTATAACA+AGG 0.583286 4:+74854863 MsG0480022629.01.T01:CDS
GCTGAATAAACCAGAATGCA+AGG 0.583808 4:+74856556 MsG0480022629.01.T01:CDS
TCATAGAAGATCTCATCGAC+TGG 0.589050 4:-74857354 None:intergenic
AGACACTAACGACTCTCACT+CGG 0.589228 4:+74857072 MsG0480022629.01.T01:CDS
ACCTCCTTGAAAACGTGCAA+GGG 0.590185 4:-74856372 None:intergenic
GTCATCAAGATGAAGTGCTA+AGG 0.592615 4:-74855615 None:intergenic
GGTAAATCAGGTGTTGCACA+TGG 0.593570 4:+74854193 MsG0480022629.01.T01:CDS
GATCAAAATGACTACTATGG+AGG 0.599865 4:+74854215 MsG0480022629.01.T01:CDS
CGGTTGAGTGCTGTGTATGG+TGG 0.604718 4:+74856524 MsG0480022629.01.T01:CDS
CTAGAGCCCAATTCCTCTGG+TGG 0.604965 4:-74854401 None:intergenic
ACCAATGATCATGCTACTGA+TGG 0.607857 4:+74857399 MsG0480022629.01.T01:CDS
AGATCTCATCGACTGGTCCA+AGG 0.610382 4:-74857347 None:intergenic
TCAGTAGCATGATCATTGGT+GGG 0.611320 4:-74857396 None:intergenic
TGAGACTGACCAACCTCAGG+TGG 0.613165 4:+74857302 MsG0480022629.01.T01:CDS
TAGCTATTTAAGCGATTTAG+GGG 0.616783 4:+74854368 MsG0480022629.01.T01:intron
CGTTAGTGTCTGGAATAGGA+TGG 0.621499 4:-74857060 None:intergenic
CTTTGTGTATAACAAGGGAA+AGG 0.626697 4:+74854869 MsG0480022629.01.T01:CDS
CTGTGTGAGATTAAGAGATG+TGG 0.627691 4:-74854243 None:intergenic
TCAAAATGACTACTATGGAG+GGG 0.629297 4:+74854217 MsG0480022629.01.T01:CDS
TCCATCATATCTGCCTGACA+AGG 0.629352 4:+74856849 MsG0480022629.01.T01:CDS
GGAAGCTTTGTGTATAACAA+GGG 0.632018 4:+74854864 MsG0480022629.01.T01:CDS
CAATGTTGACATGATACCAA+AGG 0.632382 4:+74854433 MsG0480022629.01.T01:CDS
AGTTCCAGCAACAGATGTTG+AGG 0.634985 4:+74855026 MsG0480022629.01.T01:CDS
GTACAGTAAGATCACTGGAA+AGG 0.642420 4:+74857590 MsG0480022629.01.T01:CDS
ATATATCCACTATATGGACT+GGG 0.645856 4:+74856404 MsG0480022629.01.T01:CDS
GATACTTTGTAACATCGGTG+TGG 0.650713 4:-74854821 None:intergenic
CTGAACCACATCTTTCACTG+TGG 0.652632 4:-74857565 None:intergenic
TGAAACCACAGTGAAAGATG+TGG 0.658531 4:+74857560 MsG0480022629.01.T01:CDS
CACATCTCTTAATCTCACAC+AGG 0.661671 4:+74854244 MsG0480022629.01.T01:CDS
GGGAGATGACAAGCCACCAG+AGG 0.687637 4:+74854388 MsG0480022629.01.T01:CDS
AATGATCCCAAGTCTCACGA+AGG 0.713085 4:+74855129 MsG0480022629.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTATCTTTTATTTTCATA+TGG + Chr4:74857730-74857749 MsG0480022629.01.T01:intron 10.0%
!!! TATTTTTGTTTTATTTTTTC+AGG + Chr4:74857756-74857775 MsG0480022629.01.T01:intron 10.0%
!! AAATTGAAGTTAGATTTAAA+GGG - Chr4:74855245-74855264 None:intergenic 15.0%
!! AATTTCATTATATTGTTTGT+CGG - Chr4:74857461-74857480 None:intergenic 15.0%
!! ATAAAAGATAATATTCACAA+AGG - Chr4:74857723-74857742 None:intergenic 15.0%
!! TAAAAGATAATATTCACAAA+GGG - Chr4:74857722-74857741 None:intergenic 15.0%
!! TTATTAATAATGCATGAAAA+AGG + Chr4:74855990-74856009 MsG0480022629.01.T01:intron 15.0%
!! TTTAAAAGGAAATATAGATA+TGG - Chr4:74856448-74856467 None:intergenic 15.0%
!!! AATTTTCAAAGAGAAAAATA+AGG - Chr4:74857489-74857508 None:intergenic 15.0%
!!! TTTTAATTATGCTTTTTTCT+TGG + Chr4:74854700-74854719 MsG0480022629.01.T01:intron 15.0%
!!! TTTTCTCAGATAAATTTATA+AGG + Chr4:74856311-74856330 MsG0480022629.01.T01:intron 15.0%
!! AAAAGAAACATTCTAATAGA+TGG - Chr4:74856230-74856249 None:intergenic 20.0%
!! AAACACTTTCAAATATACTT+TGG + Chr4:74857642-74857661 MsG0480022629.01.T01:intron 20.0%
!! ATCGAAACATTGATATTTAT+CGG + Chr4:74854542-74854561 MsG0480022629.01.T01:intron 20.0%
!! CAAATTGAAGTTAGATTTAA+AGG - Chr4:74855246-74855265 None:intergenic 20.0%
!! GTATATCTTACTTTGTATTA+AGG - Chr4:74856164-74856183 None:intergenic 20.0%
!! TATATTAGTACTTATGTTTG+AGG - Chr4:74855776-74855795 None:intergenic 20.0%
!! TATGAAATAAAAATCTGATG+TGG - Chr4:74855348-74855367 None:intergenic 20.0%
!! TCAAAAGAAAGTAAAACATA+TGG - Chr4:74854906-74854925 None:intergenic 20.0%
!! TTGTAAAACAATTTCTAATG+AGG + Chr4:74854631-74854650 MsG0480022629.01.T01:intron 20.0%
!!! AAAAGCAATATATTTTCCTT+TGG - Chr4:74857268-74857287 None:intergenic 20.0%
!!! AAAGCAATATATTTTCCTTT+GGG - Chr4:74857267-74857286 None:intergenic 20.0%
!!! TTGAATCAAAGTATTGAATT+CGG - Chr4:74855512-74855531 None:intergenic 20.0%
! AAAACCGTAATACTTTATTG+TGG - Chr4:74856125-74856144 None:intergenic 25.0%
! AAGATATACACCTTTGATAA+GGG + Chr4:74856175-74856194 MsG0480022629.01.T01:intron 25.0%
! AATATGAGAAAAGTTACCTT+TGG - Chr4:74854452-74854471 None:intergenic 25.0%
! ATAAAAGCCATATAACTTCT+AGG - Chr4:74855960-74855979 None:intergenic 25.0%
! ATAAACTACCATAAAACAGA+TGG - Chr4:74854768-74854787 None:intergenic 25.0%
! ATAGCTATTTAAGCGATTTA+GGG + Chr4:74854367-74854386 MsG0480022629.01.T01:intron 25.0%
! ATATTGAAAATCTGCATAAG+AGG - Chr4:74854277-74854296 None:intergenic 25.0%
! CATAAATACAGTCCAAATTA+TGG - Chr4:74854731-74854750 None:intergenic 25.0%
! CATAATTTGGACTGTATTTA+TGG + Chr4:74854729-74854748 MsG0480022629.01.T01:intron 25.0%
! TAAGATATACACCTTTGATA+AGG + Chr4:74856174-74856193 MsG0480022629.01.T01:intron 25.0%
! TATAGCTATTTAAGCGATTT+AGG + Chr4:74854366-74854385 MsG0480022629.01.T01:intron 25.0%
! TATATCTGCTAGATTTCTAA+GGG + Chr4:74856872-74856891 MsG0480022629.01.T01:intron 25.0%
! TATGAAAAATTCTGTAGAGA+TGG + Chr4:74855794-74855813 MsG0480022629.01.T01:intron 25.0%
! TCTTCATAATGCTTTAATGA+TGG - Chr4:74855399-74855418 None:intergenic 25.0%
! TGATGTAGAAAAGAAAAATC+AGG - Chr4:74855846-74855865 None:intergenic 25.0%
! TTTAAAGGGATGTAAAATCA+AGG - Chr4:74855231-74855250 None:intergenic 25.0%
!! AAAAAATGAAACACTAGTCT+TGG - Chr4:74857694-74857713 None:intergenic 25.0%
!! AAGCAATATATTTTCCTTTG+GGG - Chr4:74857266-74857285 None:intergenic 25.0%
!! CAATTTTATGTATGTGTGTA+TGG + Chr4:74856688-74856707 MsG0480022629.01.T01:intron 25.0%
!! GAAATTTTCTGTTGATCTAA+AGG - Chr4:74854481-74854500 None:intergenic 25.0%
!! TGTTTTATGGTAGTTTATGA+TGG + Chr4:74854770-74854789 MsG0480022629.01.T01:intron 25.0%
!! TTCTTGGATTTTCCATAATT+TGG + Chr4:74854716-74854735 MsG0480022629.01.T01:intron 25.0%
!!! AAAAACTATGCAATTTGCTA+AGG + Chr4:74854654-74854673 MsG0480022629.01.T01:intron 25.0%
!!! ACAGTTTTTAGTAAAGCTTT+TGG - Chr4:74855874-74855893 None:intergenic 25.0%
!!! AGTATAGATGTTTTGTTTCA+TGG + Chr4:74854307-74854326 MsG0480022629.01.T01:intron 25.0%
!!! GTTTTAGTATTCTTGTACAT+AGG + Chr4:74856747-74856766 MsG0480022629.01.T01:intron 25.0%
AAAATAGTTCACTGAATCAC+TGG - Chr4:74855441-74855460 None:intergenic 30.0%
AATAAGCCGAAGAAAAAGAA+AGG - Chr4:74855208-74855227 None:intergenic 30.0%
AATTCGGTTAAAATAACTGC+TGG - Chr4:74855496-74855515 None:intergenic 30.0%
ACAGCTTAAAGTAATTCAAC+TGG - Chr4:74856617-74856636 None:intergenic 30.0%
ACATATGCCAAATGACTATA+TGG - Chr4:74856289-74856308 None:intergenic 30.0%
AGCTTTACTAAAAACTGTGA+AGG + Chr4:74855876-74855895 MsG0480022629.01.T01:intron 30.0%
ATATAGATATGGAAAACCTG+AGG - Chr4:74856437-74856456 None:intergenic 30.0%
ATATATCCACTATATGGACT+GGG + Chr4:74856404-74856423 MsG0480022629.01.T01:CDS 30.0%
ATCAAAATGACTACTATGGA+GGG + Chr4:74854216-74854235 MsG0480022629.01.T01:CDS 30.0%
ATCATGACCATATAGTCATT+TGG + Chr4:74856279-74856298 MsG0480022629.01.T01:intron 30.0%
ATGGATCAAAATGACTACTA+TGG + Chr4:74854212-74854231 MsG0480022629.01.T01:CDS 30.0%
ATTCTTCTTAGTACTTACTG+TGG - Chr4:74857436-74857455 None:intergenic 30.0%
CAAAACAAGCATAATGATAG+TGG - Chr4:74856257-74856276 None:intergenic 30.0%
CAAAGATCCTAGAAGTTATA+TGG + Chr4:74855950-74855969 MsG0480022629.01.T01:intron 30.0%
CACTATTTAATCAATCCAAC+AGG + Chr4:74856994-74857013 MsG0480022629.01.T01:intron 30.0%
CCATAAAACAGATGGAAAAT+TGG - Chr4:74854760-74854779 None:intergenic 30.0%
CCTTACATATATCCACTATA+TGG + Chr4:74856398-74856417 MsG0480022629.01.T01:CDS 30.0%
GAATTACTTTAAGCTGTGTT+AGG + Chr4:74856620-74856639 MsG0480022629.01.T01:intron 30.0%
GTATATCTGCTAGATTTCTA+AGG + Chr4:74856871-74856890 MsG0480022629.01.T01:intron 30.0%
GTTCAGATACTTTGTAACAT+CGG - Chr4:74854829-74854848 None:intergenic 30.0%
GTTGGATTGATTAAATAGTG+AGG - Chr4:74856994-74857013 None:intergenic 30.0%
TACAAGAATACTAAAACGTG+AGG - Chr4:74856744-74856763 None:intergenic 30.0%
TAGCTATTTAAGCGATTTAG+GGG + Chr4:74854368-74854387 MsG0480022629.01.T01:intron 30.0%
TCAATGTTTCGATGCTTTAT+CGG - Chr4:74854535-74854554 None:intergenic 30.0%
TCATGTCAACATTGTATTCT+CGG - Chr4:74854427-74854446 None:intergenic 30.0%
TGAGGAGAAATACATAGAAA+AGG - Chr4:74856726-74856745 None:intergenic 30.0%
TTAATTCCACACAAGCTAAT+CGG + Chr4:74857179-74857198 MsG0480022629.01.T01:intron 30.0%
TTTACCAAGAATTGTGTCAA+AGG - Chr4:74854179-74854198 None:intergenic 30.0%
! AAGGCCACAATAAAGTATTA+CGG + Chr4:74856118-74856137 MsG0480022629.01.T01:intron 30.0%
! AGCAATATATTTTCCTTTGG+GGG - Chr4:74857265-74857284 None:intergenic 30.0%
! ATACTTTATTGTGGCCTTTT+AGG - Chr4:74856116-74856135 None:intergenic 30.0%
! CCAATTTTCCATCTGTTTTA+TGG + Chr4:74854757-74854776 MsG0480022629.01.T01:intron 30.0%
! GATCATTAGCTTCATAATCT+TGG - Chr4:74855116-74855135 None:intergenic 30.0%
! GATGATACAGTTGACTTTAT+TGG + Chr4:74855587-74855606 MsG0480022629.01.T01:CDS 30.0%
! TATGCTTTTGTAGAGTGATA+TGG + Chr4:74855707-74855726 MsG0480022629.01.T01:intron 30.0%
! TGTATTAAGGATTTAGCTTC+TGG - Chr4:74856151-74856170 None:intergenic 30.0%
!! ACTTCGATACTTTTGATTAC+TGG + Chr4:74856489-74856508 MsG0480022629.01.T01:intron 30.0%
!! CCATATAGTGGATATATGTA+AGG - Chr4:74856401-74856420 None:intergenic 30.0%
!! CTCTGCAAGGATTTAATTTT+AGG - Chr4:74857519-74857538 None:intergenic 30.0%
ATATAGTTACCAACCTACCA+TGG + Chr4:74856013-74856032 MsG0480022629.01.T01:intron 35.0%
ATGAAACCTCTTGCATATTG+AGG + Chr4:74854955-74854974 MsG0480022629.01.T01:intron 35.0%
CAAATGCAGCAAATATGGAT+TGG + Chr4:74855562-74855581 MsG0480022629.01.T01:intron 35.0%
CAATGTTGACATGATACCAA+AGG + Chr4:74854433-74854452 MsG0480022629.01.T01:CDS 35.0%
CATATATCCACTATATGGAC+TGG + Chr4:74856403-74856422 MsG0480022629.01.T01:CDS 35.0%
CTAGGATCTTTGAGTCATTA+AGG - Chr4:74855942-74855961 None:intergenic 35.0%
CTTTGTGTATAACAAGGGAA+AGG + Chr4:74854869-74854888 MsG0480022629.01.T01:CDS 35.0%
GACACAATTCTTGGTAAATC+AGG + Chr4:74854181-74854200 MsG0480022629.01.T01:CDS 35.0%
GATCAAAATGACTACTATGG+AGG + Chr4:74854215-74854234 MsG0480022629.01.T01:CDS 35.0%
TCAAAATGACTACTATGGAG+GGG + Chr4:74854217-74854236 MsG0480022629.01.T01:CDS 35.0%
TCAATATGCAAGAGGTTTCA+TGG - Chr4:74854956-74854975 None:intergenic 35.0%
TGCAGTGGTTTATCATATAC+CGG + Chr4:74855743-74855762 MsG0480022629.01.T01:intron 35.0%
TGTAGAGTGATATGGTTTGA+AGG + Chr4:74855715-74855734 MsG0480022629.01.T01:intron 35.0%
TTCTCAAACAGACCCATTAA+AGG - Chr4:74855063-74855082 None:intergenic 35.0%
TTGTCCAAATGCAGCAAATA+TGG + Chr4:74855557-74855576 MsG0480022629.01.T01:intron 35.0%
! ACATAGAAGCATGTCCTAAA+AGG + Chr4:74856099-74856118 MsG0480022629.01.T01:intron 35.0%
! CAATCCATATTTGCTGCATT+TGG - Chr4:74855564-74855583 None:intergenic 35.0%
! CTGCTTCCTTTCTTTTTCTT+CGG + Chr4:74855199-74855218 MsG0480022629.01.T01:intron 35.0%
! GATTTTCCTCAATATGCAAG+AGG - Chr4:74854964-74854983 None:intergenic 35.0%
! GGAAGCTTTGTGTATAACAA+GGG + Chr4:74854864-74854883 MsG0480022629.01.T01:CDS 35.0%
! TCATCTTGATGACAGTTACT+TGG + Chr4:74855625-74855644 MsG0480022629.01.T01:CDS 35.0%
! TGGAAGCTTTGTGTATAACA+AGG + Chr4:74854863-74854882 MsG0480022629.01.T01:CDS 35.0%
! TTATGTTTGAGGTCGAATAC+CGG - Chr4:74855765-74855784 None:intergenic 35.0%
!! CGATACTTTTGATTACTGGA+AGG + Chr4:74856493-74856512 MsG0480022629.01.T01:intron 35.0%
!! CTGAACTTTAAAGCTGTAGA+TGG + Chr4:74854843-74854862 MsG0480022629.01.T01:CDS 35.0%
!! TAATCGGTTTGTGATTTCCA+TGG + Chr4:74857195-74857214 MsG0480022629.01.T01:intron 35.0%
!!! GTCTAGTTTTCCCTTATCAA+AGG - Chr4:74856188-74856207 None:intergenic 35.0%
ACCAATGATCATGCTACTGA+TGG + Chr4:74857399-74857418 MsG0480022629.01.T01:CDS 40.0%
ACCATCAGTAGCATGATCAT+TGG - Chr4:74857403-74857422 None:intergenic 40.0%
ATCAGTAGCATGATCATTGG+TGG - Chr4:74857400-74857419 None:intergenic 40.0%
ATCCAACAGGTTCAAAACGT+TGG + Chr4:74857007-74857026 MsG0480022629.01.T01:intron 40.0%
CACAAACTTACCTTGCATTC+TGG - Chr4:74856569-74856588 None:intergenic 40.0%
CACATCTCTTAATCTCACAC+AGG + Chr4:74854244-74854263 MsG0480022629.01.T01:CDS 40.0%
CAGATGTACAGTAAGATCAC+TGG + Chr4:74857585-74857604 MsG0480022629.01.T01:CDS 40.0%
CTGTGTGAGATTAAGAGATG+TGG - Chr4:74854246-74854265 None:intergenic 40.0%
GATACTTTGTAACATCGGTG+TGG - Chr4:74854824-74854843 None:intergenic 40.0%
GCACTGAAGTCACCTTTAAT+GGG + Chr4:74855048-74855067 MsG0480022629.01.T01:CDS 40.0%
GCTGAATAAACCAGAATGCA+AGG + Chr4:74856556-74856575 MsG0480022629.01.T01:CDS 40.0%
GTACAGTAAGATCACTGGAA+AGG + Chr4:74857590-74857609 MsG0480022629.01.T01:CDS 40.0%
GTGATTTCCATGGTTATTGC+AGG + Chr4:74857205-74857224 MsG0480022629.01.T01:intron 40.0%
GTGGTTTCAAAGTGTGTTGT+GGG - Chr4:74857549-74857568 None:intergenic 40.0%
TCAGTAGCATGATCATTGGT+GGG - Chr4:74857399-74857418 None:intergenic 40.0%
TCATAGAAGATCTCATCGAC+TGG - Chr4:74857357-74857376 None:intergenic 40.0%
TCTAGCAGATATACCTTGTC+AGG - Chr4:74856865-74856884 None:intergenic 40.0%
TGAAACCACAGTGAAAGATG+TGG + Chr4:74857560-74857579 MsG0480022629.01.T01:CDS 40.0%
TGGTAGTTTATGATGGCCAA+TGG + Chr4:74854777-74854796 MsG0480022629.01.T01:intron 40.0%
TGTGGTTTCAAAGTGTGTTG+TGG - Chr4:74857550-74857569 None:intergenic 40.0%
TTACTTGGATAAGCCAGCTA+AGG + Chr4:74855640-74855659 MsG0480022629.01.T01:CDS 40.0%
! GGATTTTGTGGACAGAGTTA+AGG + Chr4:74855661-74855680 MsG0480022629.01.T01:CDS 40.0%
! GTCATCAAGATGAAGTGCTA+AGG - Chr4:74855618-74855637 None:intergenic 40.0%
! TAAGCCAGCTAAGGATTTTG+TGG + Chr4:74855649-74855668 MsG0480022629.01.T01:CDS 40.0%
!! AAAGGTACCTGCAATAACCA+TGG - Chr4:74857215-74857234 None:intergenic 40.0%
!! ATCATATGCGACTTGCTAAC+TGG - Chr4:74855465-74855484 None:intergenic 40.0%
!! ATTACTGGAAGGCATTTGCT+CGG + Chr4:74856504-74856523 MsG0480022629.01.T01:intron 40.0%
!! TTCCAACGTTTTGAACCTGT+TGG - Chr4:74857012-74857031 None:intergenic 40.0%
AAATGAAGAACTTCCGAGCC+CGG - Chr4:74855089-74855108 None:intergenic 45.0%
AACCTCCTTGAAAACGTGCA+AGG - Chr4:74856376-74856395 None:intergenic 45.0%
AACTCTCCCAGTCCATATAG+TGG - Chr4:74856413-74856432 None:intergenic 45.0%
AATGATCCCAAGTCTCACGA+AGG + Chr4:74855129-74855148 MsG0480022629.01.T01:CDS 45.0%
ACCTCCTTGAAAACGTGCAA+GGG - Chr4:74856375-74856394 None:intergenic 45.0%
ACCTTGTCAGGCAGATATGA+TGG - Chr4:74856853-74856872 None:intergenic 45.0%
AGACACTAACGACTCTCACT+CGG + Chr4:74857072-74857091 MsG0480022629.01.T01:CDS 45.0%
AGGTAGAGTTTGACGCTGAT+GGG + Chr4:74856767-74856786 MsG0480022629.01.T01:intron 45.0%
AGTTCCAGCAACAGATGTTG+AGG + Chr4:74855026-74855045 MsG0480022629.01.T01:CDS 45.0%
ATCAAGTCCTTCGTGAGACT+TGG - Chr4:74855139-74855158 None:intergenic 45.0%
ATGTTTGACACATCCTGCCA+TGG - Chr4:74856033-74856052 None:intergenic 45.0%
ATTCTGCCACAGAAGCAACT+TGG + Chr4:74857103-74857122 MsG0480022629.01.T01:CDS 45.0%
CTGAACCACATCTTTCACTG+TGG - Chr4:74857568-74857587 None:intergenic 45.0%
CTGTCCACAAAATCCTTAGC+TGG - Chr4:74855656-74855675 None:intergenic 45.0%
GAGCATAAGAGCAGCAGAAA+AGG - Chr4:74857233-74857252 None:intergenic 45.0%
GCTTATGCTCACATCAAGTG+AGG - Chr4:74855290-74855309 None:intergenic 45.0%
TAGGTAGAGTTTGACGCTGA+TGG + Chr4:74856766-74856785 MsG0480022629.01.T01:intron 45.0%
TATGATGGCCAATGGAGCTT+TGG + Chr4:74854785-74854804 MsG0480022629.01.T01:CDS 45.0%
TCAAGTCCTTCGTGAGACTT+GGG - Chr4:74855138-74855157 None:intergenic 45.0%
TCCATCATATCTGCCTGACA+AGG + Chr4:74856849-74856868 MsG0480022629.01.T01:CDS 45.0%
TTACGACCAAGTTGCTTCTG+TGG - Chr4:74857112-74857131 None:intergenic 45.0%
! CGTTAGTGTCTGGAATAGGA+TGG - Chr4:74857063-74857082 None:intergenic 45.0%
! GAATCCCTTGCACGTTTTCA+AGG + Chr4:74856368-74856387 MsG0480022629.01.T01:CDS 45.0%
! GAGTCGTTAGTGTCTGGAAT+AGG - Chr4:74857067-74857086 None:intergenic 45.0%
! GGCACTGAAGTCACCTTTAA+TGG + Chr4:74855047-74855066 MsG0480022629.01.T01:CDS 45.0%
! GGTAAATCAGGTGTTGCACA+TGG + Chr4:74854193-74854212 MsG0480022629.01.T01:CDS 45.0%
! TCAGCTGTCTTGCTGTAACT+TGG - Chr4:74855167-74855186 None:intergenic 45.0%
!! CACAAACCGATTAGCTTGTG+TGG - Chr4:74857188-74857207 None:intergenic 45.0%
!! ACAATTATATTAAATTTAAA+AGG - Chr4:74856462-74856481 None:intergenic 5.0%
!!! AAATACTTTTATTTAATTAT+TGG + Chr4:74856912-74856931 MsG0480022629.01.T01:intron 5.0%
AAGCCTGGAATCGATCTCCT+TGG + Chr4:74857330-74857349 MsG0480022629.01.T01:CDS 50.0%
AGTGCCTCAACATCTGTTGC+TGG - Chr4:74855033-74855052 None:intergenic 50.0%
AGTTACCAACCTACCATGGC+AGG + Chr4:74856017-74856036 MsG0480022629.01.T01:intron 50.0%
CACACGAACCAAAGCTCCAT+TGG - Chr4:74854796-74854815 None:intergenic 50.0%
GACAAGCCACCAGAGGAATT+GGG + Chr4:74854395-74854414 MsG0480022629.01.T01:CDS 50.0%
GAGTGAGAGTCGTTAGTGTC+TGG - Chr4:74857073-74857092 None:intergenic 50.0%
GCTTCAATTCCACCTGAGGT+TGG - Chr4:74857314-74857333 None:intergenic 50.0%
TGACAAGCCACCAGAGGAAT+TGG + Chr4:74854394-74854413 MsG0480022629.01.T01:CDS 50.0%
TTGACACATCCTGCCATGGT+AGG - Chr4:74856029-74856048 None:intergenic 50.0%
TTGGTCAGTCTCAGCTTCTG+TGG - Chr4:74857295-74857314 None:intergenic 50.0%
! AGATCTCATCGACTGGTCCA+AGG - Chr4:74857350-74857369 None:intergenic 50.0%
! TCCATCTGAAGTCACACCGA+TGG - Chr4:74856797-74856816 None:intergenic 50.0%
! TGTGGGATCATAGCTCTGCA+AGG - Chr4:74857532-74857551 None:intergenic 50.0%
!! TCCCTTGCACGTTTTCAAGG+AGG + Chr4:74856371-74856390 MsG0480022629.01.T01:CDS 50.0%
AGCTGAGACTGACCAACCTC+AGG + Chr4:74857299-74857318 MsG0480022629.01.T01:CDS 55.0%
CACATCCTGCCATGGTAGGT+TGG - Chr4:74856025-74856044 None:intergenic 55.0%
CCAGGCTTCAATTCCACCTG+AGG - Chr4:74857318-74857337 None:intergenic 55.0%
CCTCAGGTGGAATTGAAGCC+TGG + Chr4:74857315-74857334 MsG0480022629.01.T01:CDS 55.0%
CTAGAGCCCAATTCCTCTGG+TGG - Chr4:74854404-74854423 None:intergenic 55.0%
GACGCTGATGGGAAAGCCAT+CGG + Chr4:74856778-74856797 MsG0480022629.01.T01:CDS 55.0%
GCCATCGGTGTGACTTCAGA+TGG + Chr4:74856793-74856812 MsG0480022629.01.T01:CDS 55.0%
GCTCACAATGTAGCCCCCAA+AGG + Chr4:74857249-74857268 MsG0480022629.01.T01:CDS 55.0%
GGTTTGAAGGACGCTTGCAG+TGG + Chr4:74855728-74855747 MsG0480022629.01.T01:intron 55.0%
TGAGACTGACCAACCTCAGG+TGG + Chr4:74857302-74857321 MsG0480022629.01.T01:CDS 55.0%
! CGGTTGAGTGCTGTGTATGG+TGG + Chr4:74856524-74856543 MsG0480022629.01.T01:CDS 55.0%
! GCTCGGTTGAGTGCTGTGTA+TGG + Chr4:74856521-74856540 MsG0480022629.01.T01:CDS 55.0%
! GGTCCAAGGAGATCGATTCC+AGG - Chr4:74857336-74857355 None:intergenic 55.0%
! TGGGTCTGTTTGAGAAGCGC+CGG + Chr4:74855067-74855086 MsG0480022629.01.T01:CDS 55.0%
CGGCTAGAGCCCAATTCCTC+TGG - Chr4:74854407-74854426 None:intergenic 60.0%
CTGCAGCACTTGCAGCACTC+AGG - Chr4:74857801-74857820 None:intergenic 60.0%
GGGAGATGACAAGCCACCAG+AGG + Chr4:74854388-74854407 MsG0480022629.01.T01:CDS 60.0%
! TGGACTGGGAGAGTTGCCTC+AGG + Chr4:74856418-74856437 MsG0480022629.01.T01:CDS 60.0%
!! GGGTCTGTTTGAGAAGCGCC+GGG + Chr4:74855068-74855087 MsG0480022629.01.T01:CDS 60.0%
!! TGTTTGAGAAGCGCCGGGCT+CGG + Chr4:74855073-74855092 MsG0480022629.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 74854173 74857831 74854173 ID=MsG0480022629.01;Name=MsG0480022629.01
Chr4 mRNA 74854173 74857831 74854173 ID=MsG0480022629.01.T01;Parent=MsG0480022629.01;Name=MsG0480022629.01.T01;_AED=0.49;_eAED=0.50;_QI=0|0|0|1|1|1|12|0|426
Chr4 exon 74854173 74854265 74854173 ID=MsG0480022629.01.T01:exon:11000;Parent=MsG0480022629.01.T01
Chr4 exon 74854371 74854454 74854371 ID=MsG0480022629.01.T01:exon:11001;Parent=MsG0480022629.01.T01
Chr4 exon 74854783 74854890 74854783 ID=MsG0480022629.01.T01:exon:11002;Parent=MsG0480022629.01.T01
Chr4 exon 74855018 74855190 74855018 ID=MsG0480022629.01.T01:exon:11003;Parent=MsG0480022629.01.T01
Chr4 exon 74855571 74855682 74855571 ID=MsG0480022629.01.T01:exon:11004;Parent=MsG0480022629.01.T01
Chr4 exon 74856359 74856439 74856359 ID=MsG0480022629.01.T01:exon:11005;Parent=MsG0480022629.01.T01
Chr4 exon 74856515 74856577 74856515 ID=MsG0480022629.01.T01:exon:11006;Parent=MsG0480022629.01.T01
Chr4 exon 74856769 74856870 74856769 ID=MsG0480022629.01.T01:exon:11007;Parent=MsG0480022629.01.T01
Chr4 exon 74857016 74857140 74857016 ID=MsG0480022629.01.T01:exon:11008;Parent=MsG0480022629.01.T01
Chr4 exon 74857227 74857437 74857227 ID=MsG0480022629.01.T01:exon:11009;Parent=MsG0480022629.01.T01
Chr4 exon 74857537 74857611 74857537 ID=MsG0480022629.01.T01:exon:11010;Parent=MsG0480022629.01.T01
Chr4 exon 74857778 74857831 74857778 ID=MsG0480022629.01.T01:exon:11011;Parent=MsG0480022629.01.T01
Chr4 CDS 74854173 74854265 74854173 ID=MsG0480022629.01.T01:cds;Parent=MsG0480022629.01.T01
Chr4 CDS 74854371 74854454 74854371 ID=MsG0480022629.01.T01:cds;Parent=MsG0480022629.01.T01
Chr4 CDS 74854783 74854890 74854783 ID=MsG0480022629.01.T01:cds;Parent=MsG0480022629.01.T01
Chr4 CDS 74855018 74855190 74855018 ID=MsG0480022629.01.T01:cds;Parent=MsG0480022629.01.T01
Chr4 CDS 74855571 74855682 74855571 ID=MsG0480022629.01.T01:cds;Parent=MsG0480022629.01.T01
Chr4 CDS 74856359 74856439 74856359 ID=MsG0480022629.01.T01:cds;Parent=MsG0480022629.01.T01
Chr4 CDS 74856515 74856577 74856515 ID=MsG0480022629.01.T01:cds;Parent=MsG0480022629.01.T01
Chr4 CDS 74856769 74856870 74856769 ID=MsG0480022629.01.T01:cds;Parent=MsG0480022629.01.T01
Chr4 CDS 74857016 74857140 74857016 ID=MsG0480022629.01.T01:cds;Parent=MsG0480022629.01.T01
Chr4 CDS 74857227 74857437 74857227 ID=MsG0480022629.01.T01:cds;Parent=MsG0480022629.01.T01
Chr4 CDS 74857537 74857611 74857537 ID=MsG0480022629.01.T01:cds;Parent=MsG0480022629.01.T01
Chr4 CDS 74857778 74857831 74857778 ID=MsG0480022629.01.T01:cds;Parent=MsG0480022629.01.T01
Gene Sequence

>MsG0480022629.01.T01

TTGCCTTTGACACAATTCTTGGTAAATCAGGTGTTGCACATGGATCAAAATGACTACTATGGAGGGGCTTCCACATCTCTTAATCTCACACAGCTATTTAAGCGATTTAGGGGAGATGACAAGCCACCAGAGGAATTGGGCTCTAGCCGAGAATACAATGTTGACATGATACCAAAGTTTATGATGGCCAATGGAGCTTTGGTTCGTGTGCTCATCCACACCGATGTTACAAAGTATCTGAACTTTAAAGCTGTAGATGGAAGCTTTGTGTATAACAAGGGAAAGATTTACAAAGTTCCAGCAACAGATGTTGAGGCACTGAAGTCACCTTTAATGGGTCTGTTTGAGAAGCGCCGGGCTCGGAAGTTCTTCATTTATGTCCAAGATTATGAAGCTAATGATCCCAAGTCTCACGAAGGACTTGATTTGAACCAAGTTACAGCAAGACAGCTGATTTCCAAATATGGATTGGAAGATGATACAGTTGACTTTATTGGTCATGCCTTAGCACTTCATCTTGATGACAGTTACTTGGATAAGCCAGCTAAGGATTTTGTGGACAGAGTTAAGACTTATGCAGAATCCCTTGCACGTTTTCAAGGAGGTTCACCTTACATATATCCACTATATGGACTGGGAGAGTTGCCTCAGGCATTTGCTCGGTTGAGTGCTGTGTATGGTGGAACTTACATGCTGAATAAACCAGAATGCAAGGTAGAGTTTGACGCTGATGGGAAAGCCATCGGTGTGACTTCAGATGGAGAAACAGCAAAATGCAAGAAAGTCGTGTGTGATCCATCATATCTGCCTGACAAGGTTCAAAACGTTGGAAAAGTTGCGCGTGCTATATGCATTATGAGCCATCCTATTCCAGACACTAACGACTCTCACTCGGCACAAGTCATTCTGCCACAGAAGCAACTTGGTCGTAAATCAGACATGTACCTTTTCTGCTGCTCTTATGCTCACAATGTAGCCCCCAAAGGAAAATATATTGCTTTTGTTACCACAGAAGCTGAGACTGACCAACCTCAGGTGGAATTGAAGCCTGGAATCGATCTCCTTGGACCAGTCGATGAGATCTTCTATGACATCTATGACAGATTTGAACCCACCAATGATCATGCTACTGATGGTTGTTTCATCTCCACAAGCTATGATCCCACAACACACTTTGAAACCACAGTGAAAGATGTGGTTCAGATGTACAGTAAGATCACTGGAAAGGCGCTTGATCTTTCTGTTGACCTGAGTGCTGCAAGTGCTGCAGCTGAAGAATAA
Protein sequence

>MsG0480022629.01.T01

LPLTQFLVNQVLHMDQNDYYGGASTSLNLTQLFKRFRGDDKPPEELGSSREYNVDMIPKFMMANGALVRVLIHTDVTKYLNFKAVDGSFVYNKGKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQDYEANDPKSHEGLDLNQVTARQLISKYGLEDDTVDFIGHALALHLDDSYLDKPAKDFVDRVKTYAESLARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDADGKAIGVTSDGETAKCKKVVCDPSYLPDKVQNVGKVARAICIMSHPIPDTNDSHSAQVILPQKQLGRKSDMYLFCCSYAHNVAPKGKYIAFVTTEAETDQPQVELKPGIDLLGPVDEIFYDIYDRFEPTNDHATDGCFISTSYDPTTHFETTVKDVVQMYSKITGKALDLSVDLSAASAAAEE*