AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480021240.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021240.01.T01 MTR_4g069850 94.595 185 1 1 1 176 1 185 2.76e-125 353
MsG0480021240.01.T01 MTR_4g012940 84.865 185 19 1 1 176 1 185 3.79e-112 320
MsG0480021240.01.T01 MTR_2g101890 78.680 197 29 2 3 190 5 197 3.25e-110 315
MsG0480021240.01.T01 MTR_1g097420 71.892 185 43 1 1 176 1 185 4.34e-93 271
MsG0480021240.01.T01 MTR_1g097420 63.033 211 42 1 1 175 1 211 9.51e-89 261
MsG0480021240.01.T01 MTR_8g092020 69.364 173 44 1 4 167 8 180 3.70e-86 254
MsG0480021240.01.T01 MTR_6g039490 57.979 188 70 1 1 179 1 188 1.47e-73 223
MsG0480021240.01.T01 MTR_1452s0010 84.337 83 13 0 19 101 1 83 2.74e-47 152
MsG0480021240.01.T01 MTR_1686s0010 68.750 80 25 0 19 98 1 80 8.30e-37 124
MsG0480021240.01.T01 MTR_2g005510 36.449 214 105 6 1 190 1 207 8.27e-36 126
MsG0480021240.01.T01 MTR_1g068740 39.888 178 88 6 2 166 5 176 1.20e-33 120
MsG0480021240.01.T01 MTR_2g005500 38.690 168 87 4 8 166 9 169 2.29e-33 119
MsG0480021240.01.T01 MTR_4g064897 39.394 165 84 4 8 163 12 169 3.27e-33 119
MsG0480021240.01.T01 MTR_1g068730 39.326 178 89 6 2 166 5 176 4.24e-33 119
MsG0480021240.01.T01 MTR_7g100020 40.476 168 85 5 8 166 15 176 9.68e-33 118
MsG0480021240.01.T01 MTR_1g115325 40.476 168 85 5 8 166 15 176 1.13e-32 118
MsG0480021240.01.T01 MTR_2g096550 39.286 168 88 5 8 166 15 177 3.52e-32 116
MsG0480021240.01.T01 MTR_1663s0010 65.333 75 26 0 101 175 1 75 1.76e-31 110
MsG0480021240.01.T01 MTR_3g069510 38.095 168 88 4 8 166 12 172 3.74e-31 114
MsG0480021240.01.T01 MTR_2g014990 34.328 201 105 6 8 191 13 203 4.96e-31 114
MsG0480021240.01.T01 MTR_7g081700 37.714 175 90 5 8 170 8 175 9.37e-31 112
MsG0480021240.01.T01 MTR_4g088090 33.333 201 107 6 8 191 13 203 3.80e-30 111
MsG0480021240.01.T01 MTR_4g079350 36.364 165 89 4 8 163 13 170 1.23e-29 110
MsG0480021240.01.T01 MTR_8g006970 38.554 166 86 5 8 164 8 166 1.51e-29 108
MsG0480021240.01.T01 MTR_5g013900 36.264 182 95 4 10 177 11 185 1.64e-29 109
MsG0480021240.01.T01 MTR_8g006970 37.349 166 88 4 8 164 22 180 3.83e-29 108
MsG0480021240.01.T01 MTR_4g063160 39.412 170 86 6 8 166 15 178 5.55e-29 108
MsG0480021240.01.T01 MTR_4g099470 40.559 143 78 3 24 166 9 144 7.11e-29 107
MsG0480021240.01.T01 MTR_6g021790 34.759 187 106 4 8 185 6 185 7.94e-29 107
MsG0480021240.01.T01 MTR_8g103550 34.392 189 107 5 1 179 1 182 1.92e-28 106
MsG0480021240.01.T01 MTR_1g052475 38.182 165 86 4 8 163 15 172 3.33e-28 106
MsG0480021240.01.T01 MTR_2g027660 35.233 193 108 5 8 190 6 191 5.05e-28 105
MsG0480021240.01.T01 MTR_3g087160 34.921 189 102 4 10 184 11 192 5.72e-28 105
MsG0480021240.01.T01 MTR_8g090215 37.912 182 92 5 10 177 11 185 6.31e-28 105
MsG0480021240.01.T01 MTR_4g098950 36.269 193 101 6 10 187 11 196 6.85e-28 105
MsG0480021240.01.T01 MTR_3g086980 36.970 165 88 4 8 163 16 173 7.22e-28 105
MsG0480021240.01.T01 MTR_8g036220 37.654 162 85 4 8 160 16 170 8.13e-28 105
MsG0480021240.01.T01 MTR_3g064390 36.364 165 89 4 10 165 12 169 2.08e-27 103
MsG0480021240.01.T01 MTR_7g405790 33.929 168 95 4 8 166 15 175 2.31e-27 104
MsG0480021240.01.T01 MTR_2g075950 35.758 165 90 5 8 163 13 170 3.15e-27 103
MsG0480021240.01.T01 MTR_5g076590 35.758 165 90 4 10 165 12 169 1.07e-26 102
MsG0480021240.01.T01 MTR_0262s0050 37.576 165 87 4 8 163 15 172 1.20e-26 102
MsG0480021240.01.T01 MTR_2g090865 36.420 162 87 4 8 160 11 165 1.40e-26 102
MsG0480021240.01.T01 MTR_8g089985 34.545 165 92 4 8 163 17 174 1.57e-26 102
MsG0480021240.01.T01 MTR_8g031680 35.673 171 94 4 9 170 7 170 3.38e-26 101
MsG0480021240.01.T01 MTR_1g078200 33.929 168 95 4 8 166 14 174 5.69e-26 100
MsG0480021240.01.T01 MTR_2g083860 34.545 165 92 4 8 163 13 170 1.90e-25 99.4
MsG0480021240.01.T01 MTR_7g051940 32.738 168 97 4 8 166 13 173 3.08e-25 98.6
MsG0480021240.01.T01 MTR_6g079550 35.185 162 89 4 8 160 12 166 6.07e-25 97.8
MsG0480021240.01.T01 MTR_8g031870 33.333 165 94 4 10 165 8 165 1.64e-24 96.3
MsG0480021240.01.T01 MTR_8g031660 34.857 175 98 4 8 173 6 173 1.76e-24 96.7
MsG0480021240.01.T01 MTR_8g027220 33.511 188 101 5 1 171 19 199 2.12e-24 97.1
MsG0480021240.01.T01 MTR_1g094220 34.132 167 93 5 9 165 32 191 5.54e-24 95.1
MsG0480021240.01.T01 MTR_1g068730 38.346 133 65 4 2 121 5 133 5.58e-24 94.4
MsG0480021240.01.T01 MTR_1g068740 38.346 133 65 4 2 121 5 133 1.26e-23 94.0
MsG0480021240.01.T01 MTR_1812s0010 58.209 67 28 0 102 168 2 68 1.37e-23 90.5
MsG0480021240.01.T01 MTR_8g107070 35.185 162 89 4 8 160 14 168 3.71e-23 94.4
MsG0480021240.01.T01 MTR_8g093740 33.526 173 98 6 8 170 13 178 7.84e-23 92.0
MsG0480021240.01.T01 MTR_1g094220 33.333 165 93 5 9 163 32 189 1.41e-22 91.3
MsG0480021240.01.T01 MTR_7g117910 35.811 148 78 4 8 146 20 159 3.69e-22 90.5
MsG0480021240.01.T01 MTR_1g029450 34.104 173 97 6 8 170 17 182 4.65e-22 90.5
MsG0480021240.01.T01 MTR_1g094220 32.927 164 93 5 9 162 32 188 7.84e-22 89.7
MsG0480021240.01.T01 MTR_1g094220 33.129 163 92 5 9 161 32 187 1.40e-21 89.7
MsG0480021240.01.T01 MTR_8g093740 35.915 142 84 4 30 170 10 145 3.52e-21 87.0
MsG0480021240.01.T01 MTR_7g103070 33.939 165 93 5 10 164 18 176 5.33e-21 87.4
MsG0480021240.01.T01 MTR_8g031830 32.927 164 94 4 5 159 3 159 9.18e-21 86.7
MsG0480021240.01.T01 MTR_2g102060 31.214 173 103 5 2 165 4 169 1.91e-20 85.9
MsG0480021240.01.T01 MTR_3g064390 36.364 121 64 2 10 121 12 128 3.01e-20 84.0
MsG0480021240.01.T01 MTR_1g090717 33.918 171 96 5 10 169 17 181 4.01e-20 85.1
MsG0480021240.01.T01 MTR_3g096350 31.792 173 101 6 2 164 6 171 1.09e-19 84.0
MsG0480021240.01.T01 MTR_1g062760 33.537 164 94 5 10 164 16 173 1.24e-19 84.0
MsG0480021240.01.T01 MTR_5g036990 51.087 92 40 3 30 120 32 119 9.03e-19 79.3
MsG0480021240.01.T01 MTR_2g093510 71.154 52 15 0 125 176 776 827 4.16e-17 80.1
MsG0480021240.01.T01 MTR_7g103070 38.136 118 66 4 48 164 9 120 1.92e-16 73.9
MsG0480021240.01.T01 MTR_3g107707 28.313 166 100 4 9 165 14 169 5.14e-16 74.3
MsG0480021240.01.T01 MTR_3g107717 28.313 166 100 4 9 165 14 169 5.25e-16 74.3
MsG0480021240.01.T01 MTR_3g107713 28.313 166 100 4 9 165 14 169 5.76e-16 74.3
MsG0480021240.01.T01 MTR_3g096350 33.594 128 71 4 2 119 6 129 8.69e-16 72.4
MsG0480021240.01.T01 MTR_3g096350 33.594 128 71 4 2 119 6 129 1.13e-15 71.6
MsG0480021240.01.T01 MTR_6g087980 28.641 206 117 6 9 190 7 206 2.13e-14 69.7
MsG0480021240.01.T01 MTR_4g113620 28.485 165 92 6 9 165 14 160 3.60e-13 66.2
MsG0480021240.01.T01 MTR_4g088055 28.090 178 104 5 9 168 7 178 4.26e-12 63.2
MsG0480021240.01.T01 MTR_2g090875 26.966 178 106 5 9 168 7 178 5.92e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021240.01.T01 AT3G18820 88.649 185 12 1 1 176 1 185 1.52e-118 336
MsG0480021240.01.T01 AT1G49300 85.405 185 18 1 1 176 1 185 7.93e-114 324
MsG0480021240.01.T01 AT1G49300 85.405 185 18 1 1 176 1 185 7.93e-114 324
MsG0480021240.01.T01 AT1G52280 80.978 184 26 1 1 175 1 184 6.63e-107 306
MsG0480021240.01.T01 AT3G16100 79.348 184 29 1 1 175 1 184 6.68e-106 304
MsG0480021240.01.T01 AT4G09720 70.270 185 46 1 1 176 1 185 3.27e-93 272
MsG0480021240.01.T01 AT1G22740 70.270 185 46 1 1 176 1 185 5.73e-92 268
MsG0480021240.01.T01 AT4G09720 68.421 190 46 2 1 176 1 190 6.80e-90 263
MsG0480021240.01.T01 AT4G09720 66.327 196 46 2 1 176 1 196 2.60e-89 262
MsG0480021240.01.T01 AT2G21880 68.182 176 47 1 4 170 5 180 1.31e-85 253
MsG0480021240.01.T01 AT4G09720 72.667 150 41 0 27 176 2 151 3.18e-79 235
MsG0480021240.01.T01 AT4G09720 72.667 150 41 0 27 176 2 151 3.18e-79 235
MsG0480021240.01.T01 AT4G09720 72.667 150 41 0 27 176 2 151 3.18e-79 235
MsG0480021240.01.T01 AT2G21880 71.053 152 44 0 19 170 4 155 9.77e-79 234
MsG0480021240.01.T01 AT2G21880 71.053 152 44 0 19 170 4 155 9.77e-79 234
MsG0480021240.01.T01 AT2G21880 63.636 176 47 2 4 170 5 172 4.41e-76 228
MsG0480021240.01.T01 AT5G39620 52.688 186 79 1 6 182 3 188 9.65e-66 202
MsG0480021240.01.T01 AT5G59840 41.071 168 84 5 8 166 15 176 1.77e-33 120
MsG0480021240.01.T01 AT1G28550 34.328 201 106 6 8 191 13 204 3.98e-33 119
MsG0480021240.01.T01 AT1G09630 40.000 165 83 4 8 163 12 169 4.32e-33 119
MsG0480021240.01.T01 AT3G53610 40.476 168 85 5 8 166 15 176 6.33e-33 119
MsG0480021240.01.T01 AT3G53610 40.476 168 85 5 8 166 15 176 6.33e-33 119
MsG0480021240.01.T01 AT3G53610 40.476 168 85 5 8 166 15 176 6.33e-33 119
MsG0480021240.01.T01 AT3G11730 35.266 207 118 4 1 198 1 200 1.90e-32 117
MsG0480021240.01.T01 AT3G46060 39.881 168 86 5 8 166 15 176 3.15e-32 117
MsG0480021240.01.T01 AT3G46060 39.881 168 86 5 8 166 15 176 3.15e-32 117
MsG0480021240.01.T01 AT3G46060 39.881 168 86 5 8 166 15 176 3.15e-32 117
MsG0480021240.01.T01 AT4G17530 37.952 166 87 4 8 164 8 166 1.59e-31 114
MsG0480021240.01.T01 AT5G47200 37.952 166 87 4 8 164 8 166 3.71e-31 114
MsG0480021240.01.T01 AT2G33870 33.333 201 108 6 8 191 13 204 3.82e-31 114
MsG0480021240.01.T01 AT3G46830 38.182 165 86 4 8 163 12 169 5.71e-31 113
MsG0480021240.01.T01 AT3G46830 38.182 165 86 4 8 163 12 169 5.71e-31 113
MsG0480021240.01.T01 AT5G59150 36.970 165 88 4 8 163 12 169 7.15e-31 113
MsG0480021240.01.T01 AT5G03520 41.341 179 84 8 2 166 5 176 7.68e-31 113
MsG0480021240.01.T01 AT1G07410 36.970 165 88 4 8 163 12 169 2.83e-30 112
MsG0480021240.01.T01 AT5G60860 37.576 165 87 4 8 163 13 170 3.58e-30 111
MsG0480021240.01.T01 AT5G45750 34.135 208 111 7 8 198 13 211 3.93e-30 111
MsG0480021240.01.T01 AT3G15060 33.831 201 106 6 8 191 13 203 4.62e-30 111
MsG0480021240.01.T01 AT3G09900 41.341 179 84 8 2 166 5 176 5.33e-30 111
MsG0480021240.01.T01 AT2G44610 36.813 182 94 4 10 177 11 185 7.32e-30 110
MsG0480021240.01.T01 AT3G12160 39.394 165 84 4 8 163 15 172 7.66e-30 110
MsG0480021240.01.T01 AT4G35860 35.294 187 105 4 8 185 6 185 2.37e-29 109
MsG0480021240.01.T01 AT1G02130 36.145 166 90 4 8 164 8 166 5.63e-29 108
MsG0480021240.01.T01 AT4G18800 34.783 184 94 5 8 173 13 188 1.54e-28 107
MsG0480021240.01.T01 AT5G64990 40.909 176 79 6 10 172 9 172 1.94e-28 107
MsG0480021240.01.T01 AT4G17170 35.233 193 108 5 8 190 6 191 3.73e-28 106
MsG0480021240.01.T01 AT4G18430 33.939 165 93 4 8 163 13 170 3.91e-28 106
MsG0480021240.01.T01 AT5G47960 36.970 165 88 4 8 163 15 172 6.06e-28 105
MsG0480021240.01.T01 AT1G05810 34.302 172 97 4 4 166 8 172 1.01e-27 105
MsG0480021240.01.T01 AT5G03520 44.697 132 67 4 35 166 41 166 1.65e-27 104
MsG0480021240.01.T01 AT1G05810 34.302 172 97 4 4 166 54 218 2.39e-27 105
MsG0480021240.01.T01 AT1G16920 35.152 165 91 5 8 163 13 170 2.90e-27 103
MsG0480021240.01.T01 AT5G65270 34.054 185 98 5 8 175 17 194 3.73e-27 103
MsG0480021240.01.T01 AT4G39990 35.152 165 91 4 8 163 17 174 3.84e-27 103
MsG0480021240.01.T01 AT4G17160 36.471 170 92 4 9 169 7 169 4.18e-27 103
MsG0480021240.01.T01 AT2G31680 33.333 168 96 4 8 166 12 172 4.96e-27 103
MsG0480021240.01.T01 AT1G06400 35.152 165 91 4 8 163 13 170 5.97e-27 103
MsG0480021240.01.T01 AT5G10260 36.022 186 90 6 10 177 11 185 1.46e-26 102
MsG0480021240.01.T01 AT1G73640 37.037 162 86 4 8 160 13 167 3.09e-26 101
MsG0480021240.01.T01 AT4G19640 35.152 165 91 4 10 165 12 169 5.45e-26 100
MsG0480021240.01.T01 AT5G64990 39.344 183 79 7 10 172 9 179 6.58e-26 100
MsG0480021240.01.T01 AT5G45130 35.152 165 91 4 10 165 12 169 7.73e-26 100
MsG0480021240.01.T01 AT1G18200 36.970 165 88 5 8 163 13 170 1.29e-25 100
MsG0480021240.01.T01 AT2G43130 33.333 168 96 4 8 166 12 172 1.46e-25 99.8
MsG0480021240.01.T01 AT4G39890 35.366 164 91 3 10 164 11 168 3.22e-25 98.6
MsG0480021240.01.T01 AT5G45130 34.969 163 90 4 12 165 22 177 4.72e-25 98.2
MsG0480021240.01.T01 AT1G01200 34.320 169 96 3 1 160 21 183 5.79e-25 98.6
MsG0480021240.01.T01 AT5G47520 33.333 168 96 4 8 166 14 174 8.86e-25 97.8
MsG0480021240.01.T01 AT3G07410 32.143 168 98 4 8 166 12 172 2.28e-24 96.7
MsG0480021240.01.T01 AT2G22290 36.747 166 85 4 10 164 11 167 3.06e-24 95.9
MsG0480021240.01.T01 AT3G54840 32.955 176 100 6 1 165 25 193 2.19e-23 93.6
MsG0480021240.01.T01 AT5G59150 39.024 123 68 3 41 163 3 118 3.79e-23 92.0
MsG0480021240.01.T01 AT3G54840 33.333 165 93 5 11 165 2 159 6.49e-23 91.3
MsG0480021240.01.T01 AT4G35860 36.552 145 85 3 41 185 2 139 1.25e-22 90.5
MsG0480021240.01.T01 AT3G54840 32.558 172 98 6 1 161 25 189 3.24e-22 90.1
MsG0480021240.01.T01 AT1G43890 34.302 172 98 6 8 170 13 178 3.33e-22 90.9
MsG0480021240.01.T01 AT1G43890 34.302 172 98 6 8 170 13 178 3.33e-22 90.9
MsG0480021240.01.T01 AT1G43890 34.302 172 98 6 8 170 13 178 3.33e-22 90.9
MsG0480021240.01.T01 AT4G19640 34.307 137 76 3 10 137 12 143 4.33e-21 86.3
MsG0480021240.01.T01 AT5G03530 35.366 164 91 6 10 164 15 172 3.41e-20 85.5
MsG0480021240.01.T01 AT5G03530 35.366 164 91 6 10 164 15 172 3.41e-20 85.5
MsG0480021240.01.T01 AT4G19640 35.833 120 64 2 10 120 12 127 9.82e-20 83.6
MsG0480021240.01.T01 AT3G09910 32.727 165 94 6 10 164 15 172 1.36e-17 78.2
MsG0480021240.01.T01 AT3G09910 32.727 165 94 6 10 164 15 172 1.36e-17 78.2
MsG0480021240.01.T01 AT3G09910 32.727 165 94 6 10 164 15 172 1.36e-17 78.2
MsG0480021240.01.T01 AT3G09910 31.707 164 97 5 10 164 15 172 2.12e-17 77.4
MsG0480021240.01.T01 AT3G09910 31.707 164 97 5 10 164 15 172 2.12e-17 77.4
MsG0480021240.01.T01 AT5G55190 28.313 166 100 4 9 165 14 169 4.62e-16 74.3
MsG0480021240.01.T01 AT5G20020 28.313 166 100 4 9 165 14 169 5.39e-16 74.3
MsG0480021240.01.T01 AT5G20010 28.313 166 100 4 9 165 14 169 5.67e-16 74.3
MsG0480021240.01.T01 AT5G55080 25.455 165 104 3 10 165 15 169 4.86e-15 71.6
MsG0480021240.01.T01 AT4G28950 29.508 183 107 6 9 175 7 183 1.34e-14 70.5
MsG0480021240.01.T01 AT5G45970 26.816 179 107 5 9 169 7 179 1.04e-11 62.4
MsG0480021240.01.T01 AT5G62880 27.807 187 111 5 1 169 1 181 1.16e-11 62.4

Find 74 sgRNAs with CRISPR-Local

Find 241 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATCGACTACTGATGTATT+TGG 0.193524 4:-55692750 MsG0480021240.01.T01:five_prime_UTR
ATCTTCAAATTGCACTTCTT+TGG 0.266812 4:+55691422 None:intergenic
TTGGCAGATGTCTCAAAATA+TGG 0.275525 4:+55689875 None:intergenic
GGAACAGCCATATCCAAATA+TGG 0.292388 4:+55688843 None:intergenic
TTCGACATTAATACCTTCTT+TGG 0.296445 4:+55689856 None:intergenic
GTGGCGCCGTGGCCCATATT+TGG 0.304063 4:-55688856 MsG0480021240.01.T01:CDS
TCTCTCTATCGTAAATCTTA+AGG 0.319379 4:+55692703 None:intergenic
GGGCATCCTTTGCTATGGTT+TGG 0.331267 4:+55689825 None:intergenic
CCGTGGCCCATATTTGGATA+TGG 0.335545 4:-55688850 MsG0480021240.01.T01:CDS
AAGAAGTGCAATTTGAAGAT+AGG 0.335741 4:-55691419 MsG0480021240.01.T01:CDS
TCATGGGCCATGGTGGATAT+TGG 0.384424 4:-55688924 MsG0480021240.01.T01:CDS
ATTCCTCCCTCCAGTTGTTA+AGG 0.391109 4:+55690285 None:intergenic
CTCTTGAAAGTCATCATTCT+CGG 0.403803 4:-55692521 MsG0480021240.01.T01:CDS
CATTTGACAACCTTAACAAC+TGG 0.410397 4:-55690295 MsG0480021240.01.T01:CDS
AGAAAGCAACTCCTAGGCTT+TGG 0.417205 4:+55690369 None:intergenic
CTTTCAAGAGCGTTCTTCTA+CGG 0.436158 4:+55692534 None:intergenic
CGCACAGGTTTCAGAAAAGA+AGG 0.443076 4:-55689930 MsG0480021240.01.T01:intron
GCAAAGGATGCCCTGAAAAG+TGG 0.450910 4:-55689815 MsG0480021240.01.T01:CDS
TTGTTTCCTATAACAACAAA+AGG 0.451159 4:+55690112 None:intergenic
ACAACAAAAGGAAAATTCTC+TGG 0.451708 4:+55690124 None:intergenic
GGAGGAAGAGTTAACCGCTT+TGG 0.458775 4:+55692575 None:intergenic
AAACCAGTGTTGTCAAATAT+CGG 0.467210 4:-55688947 MsG0480021240.01.T01:intron
ATATGGCTGTTCCATACAAA+TGG 0.468917 4:-55688833 MsG0480021240.01.T01:CDS
TTTCAGGGCATCCTTTGCTA+TGG 0.470505 4:+55689820 None:intergenic
CTAGGCTTTGGAATCTCTCC+TGG 0.472910 4:+55690381 None:intergenic
TAGGAGTTGCTTTCTATCGT+GGG 0.475937 4:-55690361 MsG0480021240.01.T01:CDS
CGCCATACAAGCCATTTGTA+TGG 0.476276 4:+55688822 None:intergenic
CCATGGTGGATATTGGTGGC+AGG 0.486318 4:-55688917 MsG0480021240.01.T01:CDS
TTTGAGACATCTGCCAAAGA+AGG 0.487428 4:-55689869 MsG0480021240.01.T01:CDS
TTTCAAGAGCGTTCTTCTAC+GGG 0.490904 4:+55692535 None:intergenic
GGAAAATTCTCTGGATCGGA+AGG 0.495526 4:+55690133 None:intergenic
CGGGCATGGTGTGCAGCAAA+AGG 0.496942 4:-55689905 MsG0480021240.01.T01:CDS
GAACAGCCATATCCAAATAT+GGG 0.500123 4:+55688844 None:intergenic
TGCCCTGAAAAGTGGGGAAG+AGG 0.506394 4:-55689807 MsG0480021240.01.T01:CDS
GGAAACAAGATCGACATTGA+TGG 0.507185 4:-55690097 MsG0480021240.01.T01:CDS
GATTTGGGATACAGCTGGCC+AGG 0.507917 4:-55690399 MsG0480021240.01.T01:CDS
GGTTAAGAAGTCAGCTCCAA+TGG 0.508254 4:+55691443 None:intergenic
CTAGGAGTTGCTTTCTATCG+TGG 0.516699 4:-55690362 MsG0480021240.01.T01:CDS
TGGGCCATGGTGGATATTGG+TGG 0.516765 4:-55688921 MsG0480021240.01.T01:CDS
GTGTTGTCAAATATCGGTCA+TGG 0.516964 4:-55688941 MsG0480021240.01.T01:CDS
AATCAGTACAAGGCAACCAT+TGG 0.525698 4:-55691459 MsG0480021240.01.T01:CDS
CAAATATCGGTCATGGGCCA+TGG 0.531374 4:-55688934 MsG0480021240.01.T01:CDS
GCACCATTCACAAACCTGTA+AGG 0.531833 4:+55691389 None:intergenic
TTGCAGATTTGGGATACAGC+TGG 0.533863 4:-55690404 MsG0480021240.01.T01:intron
CAAAGGATGCCCTGAAAAGT+GGG 0.534379 4:-55689814 MsG0480021240.01.T01:CDS
AGGTTTCAGAAAAGAAGGCT+CGG 0.540140 4:-55689925 MsG0480021240.01.T01:CDS
TCATCATTCTCGGTGACAGC+GGG 0.542655 4:-55692511 MsG0480021240.01.T01:intron
AAAAGGAAAATTCTCTGGAT+CGG 0.543661 4:+55690129 None:intergenic
GGTTTCAGAAAAGAAGGCTC+GGG 0.559631 4:-55689924 MsG0480021240.01.T01:CDS
CACGATAGAAAGCAACTCCT+AGG 0.569261 4:+55690363 None:intergenic
TTGACAACCTTAACAACTGG+AGG 0.575421 4:-55690292 MsG0480021240.01.T01:CDS
CAGGAGAGATTCCAAAGCCT+AGG 0.576665 4:-55690380 MsG0480021240.01.T01:CDS
AACAAGATCGACATTGATGG+TGG 0.578098 4:-55690094 MsG0480021240.01.T01:CDS
TTTGGATTACAGCTGTCAGT+AGG 0.586658 4:-55692732 MsG0480021240.01.T01:five_prime_UTR
AAGAGCGTTCTTCTACGGGA+AGG 0.590281 4:+55692539 None:intergenic
CCATATCCAAATATGGGCCA+CGG 0.593457 4:+55688850 None:intergenic
AGCATTCCAAACCATAGCAA+AGG 0.595720 4:-55689831 MsG0480021240.01.T01:CDS
TGTTGTCAAATATCGGTCAT+GGG 0.604017 4:-55688940 MsG0480021240.01.T01:CDS
GTCATCATTCTCGGTGACAG+CGG 0.607687 4:-55692512 MsG0480021240.01.T01:CDS
CAGAAAAGAAGGCTCGGGCA+TGG 0.609079 4:-55689919 MsG0480021240.01.T01:CDS
AGGAGTTGCTTTCTATCGTG+GGG 0.614079 4:-55690360 MsG0480021240.01.T01:CDS
GAAGTTTAGTAATCAGTACA+AGG 0.614358 4:-55691469 MsG0480021240.01.T01:CDS
CGGGAAGGCATCGTTCAGAT+CGG 0.615340 4:+55692554 None:intergenic
TTTGAAAGATGGTGGCGCCG+TGG 0.627726 4:-55688867 MsG0480021240.01.T01:CDS
GAGAGAAACAGAGTTGAAGA+CGG 0.630192 4:-55692647 MsG0480021240.01.T01:five_prime_UTR
ACAAGATCGACATTGATGGT+GGG 0.651715 4:-55690093 MsG0480021240.01.T01:CDS
TGACAACCTTAACAACTGGA+GGG 0.655521 4:-55690291 MsG0480021240.01.T01:CDS
GAAGGCATCGTTCAGATCGG+AGG 0.665371 4:+55692557 None:intergenic
TGATGGTGGGAACAGTAGAG+TGG 0.665695 4:-55690080 MsG0480021240.01.T01:intron
ATATCGGTCATGGGCCATGG+TGG 0.666904 4:-55688931 MsG0480021240.01.T01:CDS
CCTGCCACCAATATCCACCA+TGG 0.684643 4:+55688917 None:intergenic
CAACCTTAACAACTGGAGGG+AGG 0.688480 4:-55690288 MsG0480021240.01.T01:CDS
TCACAAAACACATACCAAAG+CGG 0.704022 4:-55692589 MsG0480021240.01.T01:five_prime_UTR
AAAGGATGCCCTGAAAAGTG+GGG 0.713593 4:-55689813 MsG0480021240.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATGATAATTATGATTAT+CGG + Chr4:55689017-55689036 None:intergenic 10.0%
!! ACTTAATTTAAAAAATTGTT+TGG - Chr4:55689487-55689506 MsG0480021240.01.T01:intron 10.0%
!! TTAAAATTATCAATAAAAAC+AGG + Chr4:55690990-55691009 None:intergenic 10.0%
!!! ATATTATTTTAAAATCACTT+TGG - Chr4:55692196-55692215 MsG0480021240.01.T01:intron 10.0%
!!! TTGATAATTTTAAGTTAAAA+TGG - Chr4:55690997-55691016 MsG0480021240.01.T01:intron 10.0%
!! ATAAACATTCAAAACAAAAA+GGG + Chr4:55690196-55690215 None:intergenic 15.0%
!! ATATATAGATTGAATCTAAT+GGG - Chr4:55690719-55690738 MsG0480021240.01.T01:intron 15.0%
!!! GTACAAAATAATTTTTGTAT+GGG + Chr4:55692427-55692446 None:intergenic 15.0%
!!! TGTACAAAATAATTTTTGTA+TGG + Chr4:55692428-55692447 None:intergenic 15.0%
!!! TTCACATATCTAAAATATAT+AGG + Chr4:55689977-55689996 None:intergenic 15.0%
!! AAACATAACATCAATAACAT+TGG + Chr4:55692034-55692053 None:intergenic 20.0%
!! AAACATGTTAGATAGAAAAA+GGG + Chr4:55691427-55691446 None:intergenic 20.0%
!! AAATCAACTTAACATTAACA+TGG + Chr4:55689523-55689542 None:intergenic 20.0%
!! CATAAAAAATGCATTAAGTT+AGG - Chr4:55691742-55691761 MsG0480021240.01.T01:intron 20.0%
!! CTATAAGTAACTTAATTTAC+AGG - Chr4:55689180-55689199 MsG0480021240.01.T01:intron 20.0%
!! GATAAACATTCAAAACAAAA+AGG + Chr4:55690197-55690216 None:intergenic 20.0%
!! GATATATAGATTGAATCTAA+TGG - Chr4:55690718-55690737 MsG0480021240.01.T01:intron 20.0%
!! TATATAGATTGAATCTAATG+GGG - Chr4:55690720-55690739 MsG0480021240.01.T01:intron 20.0%
!! TTTGTACTAAATATCTATTG+AGG + Chr4:55689759-55689778 None:intergenic 20.0%
!!! AATAGTTTTTATCAGTGTTA+TGG + Chr4:55692693-55692712 None:intergenic 20.0%
!!! AATTTTCCTTTTGTTGTTAT+AGG - Chr4:55691351-55691370 MsG0480021240.01.T01:intron 20.0%
!!! ATCTTTCTGTTATTTGATAA+TGG - Chr4:55691993-55692012 MsG0480021240.01.T01:intron 20.0%
!!! ATGTTATTGATGTTATGTTT+TGG - Chr4:55692034-55692053 MsG0480021240.01.T01:intron 20.0%
!!! GTGTTATAGTTAATTTGATT+TGG - Chr4:55692752-55692771 MsG0480021240.01.T01:five_prime_UTR 20.0%
!!! GTTTATGCTTTAAAAATATG+CGG - Chr4:55689933-55689952 MsG0480021240.01.T01:intron 20.0%
!!! TCATTTTTCTTATTCTTGTT+TGG - Chr4:55689141-55689160 MsG0480021240.01.T01:intron 20.0%
!!! TCTTTCTGTTATTTGATAAT+GGG - Chr4:55691994-55692013 MsG0480021240.01.T01:intron 20.0%
!!! TGTATTGCATTTTTTGAAAA+CGG - Chr4:55690515-55690534 MsG0480021240.01.T01:intron 20.0%
!!! TGTTATTGATGTTATGTTTT+GGG - Chr4:55692035-55692054 MsG0480021240.01.T01:intron 20.0%
! ACAGAAAGATTCATAATCTA+TGG + Chr4:55691983-55692002 None:intergenic 25.0%
! ACTTAATCCAATAAACTACT+AGG + Chr4:55690446-55690465 None:intergenic 25.0%
! ATAGGATTGATGTTTAATGA+TGG - Chr4:55691842-55691861 MsG0480021240.01.T01:intron 25.0%
! ATCTTTCTGATATTACTAGA+TGG - Chr4:55690214-55690233 MsG0480021240.01.T01:intron 25.0%
! ATTCTAAATCTTGCAGATTT+GGG - Chr4:55691055-55691074 MsG0480021240.01.T01:intron 25.0%
! CAAAAAATGCAATACACTTT+AGG + Chr4:55690511-55690530 None:intergenic 25.0%
! CAGAAAGATTCATAATCTAT+GGG + Chr4:55691982-55692001 None:intergenic 25.0%
! GAAACATGTTAGATAGAAAA+AGG + Chr4:55691428-55691447 None:intergenic 25.0%
! GAAGAATAAAAATAAGCAGA+AGG + Chr4:55689065-55689084 None:intergenic 25.0%
! TACAAAATACTGTGAAATAG+CGG - Chr4:55689773-55689792 MsG0480021240.01.T01:intron 25.0%
! TACATATATGTGCAAACTAA+CGG + Chr4:55690662-55690681 None:intergenic 25.0%
! TAGATAACAAGAATCATATC+TGG - Chr4:55689222-55689241 MsG0480021240.01.T01:intron 25.0%
! TCAAAATCAAATTAAGCACA+AGG + Chr4:55690108-55690127 None:intergenic 25.0%
! TGATATTACTAGATGGTTTA+TGG - Chr4:55690221-55690240 MsG0480021240.01.T01:intron 25.0%
! TGATGAAAAGATTGATATGT+TGG - Chr4:55691893-55691912 MsG0480021240.01.T01:intron 25.0%
! TTGGTTGAAGTAATGTTAAA+GGG - Chr4:55692771-55692790 MsG0480021240.01.T01:five_prime_UTR 25.0%
! TTGTTTCCTATAACAACAAA+AGG + Chr4:55691360-55691379 None:intergenic 25.0%
! TTTGGTTGAAGTAATGTTAA+AGG - Chr4:55692770-55692789 MsG0480021240.01.T01:five_prime_UTR 25.0%
!! AGTTACTTTAGATATGATTC+TGG + Chr4:55689470-55689489 None:intergenic 25.0%
!! ATTTTCACTGCAATTTTCTA+AGG - Chr4:55689894-55689913 MsG0480021240.01.T01:CDS 25.0%
!! GATTTTATTGAAGAATTCGT+AGG - Chr4:55690348-55690367 MsG0480021240.01.T01:CDS 25.0%
!! TCAATCTTTTCATCATAACA+TGG + Chr4:55691888-55691907 None:intergenic 25.0%
!!! CTAAGGTTTTAGTATTGTAT+AGG - Chr4:55689911-55689930 MsG0480021240.01.T01:CDS 25.0%
!!! GAATTATTTGTTGTATCTAC+TGG - Chr4:55689550-55689569 MsG0480021240.01.T01:intron 25.0%
!!! GTATTGCATTTTTTGAAAAC+GGG - Chr4:55690516-55690535 MsG0480021240.01.T01:intron 25.0%
AAAAGGAAAATTCTCTGGAT+CGG + Chr4:55691343-55691362 None:intergenic 30.0%
AAACCAGTGTTGTCAAATAT+CGG - Chr4:55692522-55692541 MsG0480021240.01.T01:CDS 30.0%
AACAATTTCTCAAAAACGAC+AGG + Chr4:55690579-55690598 None:intergenic 30.0%
ACAACAAAAGGAAAATTCTC+TGG + Chr4:55691348-55691367 None:intergenic 30.0%
ACTTCCTATACAAAAATCGA+AGG + Chr4:55689662-55689681 None:intergenic 30.0%
ATCTTCAAATTGCACTTCTT+TGG + Chr4:55690050-55690069 None:intergenic 30.0%
ATCTTTCAAAAAATTGGCCA+TGG + Chr4:55692592-55692611 None:intergenic 30.0%
CATTCAAAACAAAAAGGGTT+TGG + Chr4:55690191-55690210 None:intergenic 30.0%
CATTCTAAATCTTGCAGATT+TGG - Chr4:55691054-55691073 MsG0480021240.01.T01:intron 30.0%
CATTGTGAAAAAAACAGCAA+AGG - Chr4:55692365-55692384 MsG0480021240.01.T01:intron 30.0%
CTCTTGGAAAAAATGCATAT+AGG - Chr4:55691824-55691843 MsG0480021240.01.T01:intron 30.0%
CTGTTTAGCAGTACATATTT+AGG + Chr4:55691498-55691517 None:intergenic 30.0%
GAAGTTTAGTAATCAGTACA+AGG - Chr4:55690000-55690019 MsG0480021240.01.T01:intron 30.0%
GTTTGCACATATATGTAATG+TGG - Chr4:55690665-55690684 MsG0480021240.01.T01:intron 30.0%
TAACAATCCTAAACCGAAAA+AGG + Chr4:55690824-55690843 None:intergenic 30.0%
TAGTGAACTAAAACACTAGT+AGG + Chr4:55691795-55691814 None:intergenic 30.0%
TATAGAGTAGCTTAATGCAT+AGG - Chr4:55689415-55689434 MsG0480021240.01.T01:intron 30.0%
TCTCTCTATCGTAAATCTTA+AGG + Chr4:55688769-55688788 None:intergenic 30.0%
TTCGACATTAATACCTTCTT+TGG + Chr4:55691616-55691635 None:intergenic 30.0%
TTGAAGTAATGTTAAAGGGA+AGG - Chr4:55692775-55692794 MsG0480021240.01.T01:five_prime_UTR 30.0%
TTTATCAGTGTTATGGATGA+CGG + Chr4:55692686-55692705 None:intergenic 30.0%
TTTCATCATAACATGGCAAA+TGG + Chr4:55691881-55691900 None:intergenic 30.0%
TTTCCACAAGAAACAAAACA+TGG + Chr4:55690930-55690949 None:intergenic 30.0%
! AAGAAGTGCAATTTGAAGAT+AGG - Chr4:55690050-55690069 MsG0480021240.01.T01:intron 30.0%
! AGGTTTTTCATGAATGTATC+TGG + Chr4:55691478-55691497 None:intergenic 30.0%
! ATCTGATTGTGAGCATATTT+TGG - Chr4:55691768-55691787 MsG0480021240.01.T01:intron 30.0%
! GGTTTGGTAATTTGTAAATC+TGG + Chr4:55690175-55690194 None:intergenic 30.0%
! GTATCCTTCGATTTTTGTAT+AGG - Chr4:55689655-55689674 MsG0480021240.01.T01:intron 30.0%
! TTATCGACTACTGATGTATT+TGG - Chr4:55688719-55688738 MsG0480021240.01.T01:intron 30.0%
!! TTTTTCGGTTTAGGATTGTT+AGG - Chr4:55690823-55690842 MsG0480021240.01.T01:intron 30.0%
!!! ACTGTTTTAGTGCAATTTGT+TGG - Chr4:55692280-55692299 MsG0480021240.01.T01:intron 30.0%
!!! ATGGCCAATTTTTTGAAAGA+TGG - Chr4:55692591-55692610 MsG0480021240.01.T01:five_prime_UTR 30.0%
!!! ATTTTTTGGACAGTACACTT+TGG - Chr4:55690853-55690872 MsG0480021240.01.T01:intron 30.0%
!!! CTATATTTTGACGATTGTCT+TGG - Chr4:55690601-55690620 MsG0480021240.01.T01:intron 30.0%
!!! GATTTTGAGATGCTTGAAAA+TGG - Chr4:55690120-55690139 MsG0480021240.01.T01:CDS 30.0%
!!! TGCTGTTTTTTTCACAATGT+TGG + Chr4:55692364-55692383 None:intergenic 30.0%
!!! TGTTAGGCTGCTTAATTTTT+TGG - Chr4:55690839-55690858 MsG0480021240.01.T01:intron 30.0%
AAACACGCCTAGTAGTTTAT+TGG - Chr4:55690436-55690455 MsG0480021240.01.T01:intron 35.0%
AACTTTGTGATCACTTCATC+AGG - Chr4:55691308-55691327 MsG0480021240.01.T01:intron 35.0%
AATCTGGCCTATCATTTACA+AGG + Chr4:55690159-55690178 None:intergenic 35.0%
ATATGGCTGTTCCATACAAA+TGG - Chr4:55692636-55692655 MsG0480021240.01.T01:five_prime_UTR 35.0%
ATATGTGCAAACTAACGGTT+TGG + Chr4:55690657-55690676 None:intergenic 35.0%
ATGTTCAACCTTCAGTTAAG+AGG + Chr4:55690378-55690397 None:intergenic 35.0%
CATGTTAGATAGAAAAAGGG+AGG + Chr4:55691424-55691443 None:intergenic 35.0%
CATTTGACAACCTTAACAAC+TGG - Chr4:55691174-55691193 MsG0480021240.01.T01:intron 35.0%
CGAATAGTACTATTGCATAG+CGG - Chr4:55689710-55689729 MsG0480021240.01.T01:intron 35.0%
CTCTTGAAAGTCATCATTCT+CGG - Chr4:55688948-55688967 MsG0480021240.01.T01:intron 35.0%
GAACAGCCATATCCAAATAT+GGG + Chr4:55692628-55692647 None:intergenic 35.0%
GCCACCATCTTTCAAAAAAT+TGG + Chr4:55692598-55692617 None:intergenic 35.0%
TCACAAAACACATACCAAAG+CGG - Chr4:55688880-55688899 MsG0480021240.01.T01:CDS 35.0%
TCTCGAACTCTTCAATTCTA+GGG - Chr4:55688987-55689006 MsG0480021240.01.T01:intron 35.0%
TGAAGGTTGAACATGTTTGT+TGG - Chr4:55690384-55690403 MsG0480021240.01.T01:CDS 35.0%
TGTTGGAATAGCATACAACA+AGG + Chr4:55692347-55692366 None:intergenic 35.0%
TGTTGTCAAATATCGGTCAT+GGG - Chr4:55692529-55692548 MsG0480021240.01.T01:CDS 35.0%
TTGAAAACGGGATTGTGTAT+GGG - Chr4:55690528-55690547 MsG0480021240.01.T01:intron 35.0%
TTGACATGCAAGCTCAAAAT+TGG - Chr4:55689107-55689126 MsG0480021240.01.T01:intron 35.0%
TTGGCAGATGTCTCAAAATA+TGG + Chr4:55691597-55691616 None:intergenic 35.0%
TTTCCAACATCAATTGTGTC+TGG + Chr4:55692104-55692123 None:intergenic 35.0%
TTTGAAAACGGGATTGTGTA+TGG - Chr4:55690527-55690546 MsG0480021240.01.T01:intron 35.0%
! AAGCCTTTTCCAACTAAATG+GGG + Chr4:55690270-55690289 None:intergenic 35.0%
! CAAGCCTTTTCCAACTAAAT+GGG + Chr4:55690271-55690290 None:intergenic 35.0%
! GCTATAACACTTTTGCATAG+CGG - Chr4:55689806-55689825 MsG0480021240.01.T01:CDS 35.0%
! TTCCATACAAATGGCTTGTA+TGG - Chr4:55692645-55692664 MsG0480021240.01.T01:five_prime_UTR 35.0%
!! AATACACTTTAGGATGCAGA+GGG + Chr4:55690501-55690520 None:intergenic 35.0%
!! AGTGTTGTTGATGATTTGCA+GGG - Chr4:55689607-55689626 MsG0480021240.01.T01:intron 35.0%
!! TAGTGTTGTTGATGATTTGC+AGG - Chr4:55689606-55689625 MsG0480021240.01.T01:intron 35.0%
!!! CATCCATGTTTTGTTTCTTG+TGG - Chr4:55690924-55690943 MsG0480021240.01.T01:intron 35.0%
!!! GCCAATTTTTTGAAAGATGG+TGG - Chr4:55692594-55692613 MsG0480021240.01.T01:five_prime_UTR 35.0%
AACAAGATCGACATTGATGG+TGG - Chr4:55691375-55691394 MsG0480021240.01.T01:intron 40.0%
AACAAGCACGAATTTCCACA+TGG + Chr4:55692070-55692089 None:intergenic 40.0%
AACTTGAGAGCAAACCATGT+TGG - Chr4:55692471-55692490 MsG0480021240.01.T01:intron 40.0%
AATCAGTACAAGGCAACCAT+TGG - Chr4:55690010-55690029 MsG0480021240.01.T01:intron 40.0%
ACATCTTCGGTCAAAAGTCT+CGG - Chr4:55689380-55689399 MsG0480021240.01.T01:intron 40.0%
ACTAAATGGGGTTGGATACA+TGG + Chr4:55690258-55690277 None:intergenic 40.0%
AGCATTCCAAACCATAGCAA+AGG - Chr4:55691638-55691657 MsG0480021240.01.T01:intron 40.0%
AGGTTTCAGAAAAGAAGGCT+CGG - Chr4:55691544-55691563 MsG0480021240.01.T01:intron 40.0%
ATACTGTGAAATAGCGGCTA+TGG - Chr4:55689779-55689798 MsG0480021240.01.T01:intron 40.0%
CAACCCCATTTAGTTGGAAA+AGG - Chr4:55690264-55690283 MsG0480021240.01.T01:intron 40.0%
CCATTTAGTTGGAAAAGGCT+TGG - Chr4:55690269-55690288 MsG0480021240.01.T01:intron 40.0%
CTCTCGAACTCTTCAATTCT+AGG - Chr4:55688986-55689005 MsG0480021240.01.T01:intron 40.0%
GAGAGAAACAGAGTTGAAGA+CGG - Chr4:55688822-55688841 MsG0480021240.01.T01:intron 40.0%
GCGTGTTTAATGTACACAAC+AGG + Chr4:55690424-55690443 None:intergenic 40.0%
GGAAACAAGATCGACATTGA+TGG - Chr4:55691372-55691391 MsG0480021240.01.T01:intron 40.0%
GGAACAGCCATATCCAAATA+TGG + Chr4:55692629-55692648 None:intergenic 40.0%
GTGTTGTCAAATATCGGTCA+TGG - Chr4:55692528-55692547 MsG0480021240.01.T01:CDS 40.0%
TAGGTGAACCTCTTAACTGA+AGG - Chr4:55690367-55690386 MsG0480021240.01.T01:CDS 40.0%
TCACCTTACAGGTTTGTGAA+TGG - Chr4:55690077-55690096 MsG0480021240.01.T01:intron 40.0%
TGAAACCTCATAGACAGCAA+CGG + Chr4:55692231-55692250 None:intergenic 40.0%
TGACAACCTTAACAACTGGA+GGG - Chr4:55691178-55691197 MsG0480021240.01.T01:intron 40.0%
TGACCGATATTTGACAACAC+TGG + Chr4:55692528-55692547 None:intergenic 40.0%
TGTATCCAACCCCATTTAGT+TGG - Chr4:55690258-55690277 MsG0480021240.01.T01:intron 40.0%
TTCACTATATCCACGTCTCT+TGG - Chr4:55691808-55691827 MsG0480021240.01.T01:intron 40.0%
TTGACAACCTTAACAACTGG+AGG - Chr4:55691177-55691196 MsG0480021240.01.T01:intron 40.0%
TTTGGACAGTACACTTTGGT+GGG - Chr4:55690857-55690876 MsG0480021240.01.T01:intron 40.0%
TTTGGATTACAGCTGTCAGT+AGG - Chr4:55688737-55688756 MsG0480021240.01.T01:intron 40.0%
! ACAAGATCGACATTGATGGT+GGG - Chr4:55691376-55691395 MsG0480021240.01.T01:intron 40.0%
! AGATAGGCTTTTCACCTTAC+AGG - Chr4:55690066-55690085 MsG0480021240.01.T01:intron 40.0%
! ATACAAATGGCTTGTATGGC+GGG - Chr4:55692649-55692668 MsG0480021240.01.T01:five_prime_UTR 40.0%
! CATACAAATGGCTTGTATGG+CGG - Chr4:55692648-55692667 MsG0480021240.01.T01:five_prime_UTR 40.0%
! CCAAGCCTTTTCCAACTAAA+TGG + Chr4:55690272-55690291 None:intergenic 40.0%
! CTAATACTGAAAGAGCGTGA+CGG + Chr4:55690903-55690922 None:intergenic 40.0%
! CTTTTCCAACTAAATGGGGT+TGG + Chr4:55690266-55690285 None:intergenic 40.0%
! GACCAAGCCTTGTAAATGAT+AGG - Chr4:55690149-55690168 MsG0480021240.01.T01:intron 40.0%
! TAGGAGTTGCTTTCTATCGT+GGG - Chr4:55691108-55691127 MsG0480021240.01.T01:intron 40.0%
! TTTGAGACATCTGCCAAAGA+AGG - Chr4:55691600-55691619 MsG0480021240.01.T01:intron 40.0%
! TTTGGGATTTGTTCTCCATG+TGG - Chr4:55692052-55692071 MsG0480021240.01.T01:intron 40.0%
! TTTTGGACAGTACACTTTGG+TGG - Chr4:55690856-55690875 MsG0480021240.01.T01:intron 40.0%
!! ATACACTTTAGGATGCAGAG+GGG + Chr4:55690500-55690519 None:intergenic 40.0%
!! CAATACACTTTAGGATGCAG+AGG + Chr4:55690502-55690521 None:intergenic 40.0%
!! CTTTCAAGAGCGTTCTTCTA+CGG + Chr4:55688938-55688957 None:intergenic 40.0%
!! GCAATTTGTTGGTGCTTGTT+TGG - Chr4:55692291-55692310 MsG0480021240.01.T01:intron 40.0%
!! TTGTTGATGATTTGCAGGGT+GGG - Chr4:55689611-55689630 MsG0480021240.01.T01:intron 40.0%
!! TTTCAAGAGCGTTCTTCTAC+GGG + Chr4:55688937-55688956 None:intergenic 40.0%
!!! TGAAGAGCCTTTTTCGGTTT+AGG - Chr4:55690814-55690833 MsG0480021240.01.T01:intron 40.0%
!!! TGCATTTTTTCCAAGAGACG+TGG + Chr4:55691821-55691840 None:intergenic 40.0%
AAAGGATGCCCTGAAAAGTG+GGG - Chr4:55691656-55691675 MsG0480021240.01.T01:intron 45.0%
AAAGGCTCTTCAGAGTGCAA+CGG + Chr4:55690806-55690825 None:intergenic 45.0%
ACACATAAGTTCTTGCGCAC+AGG - Chr4:55691524-55691543 MsG0480021240.01.T01:intron 45.0%
AGAAAGCAACTCCTAGGCTT+TGG + Chr4:55691103-55691122 None:intergenic 45.0%
ATGTGTCAGTGTCAGACATG+CGG - Chr4:55689313-55689332 MsG0480021240.01.T01:intron 45.0%
ATTCCTCCCTCCAGTTGTTA+AGG + Chr4:55691187-55691206 None:intergenic 45.0%
CAAAGGATGCCCTGAAAAGT+GGG - Chr4:55691655-55691674 MsG0480021240.01.T01:intron 45.0%
CAACATCAATTGTGTCTGGC+AGG + Chr4:55692100-55692119 None:intergenic 45.0%
CACGATAGAAAGCAACTCCT+AGG + Chr4:55691109-55691128 None:intergenic 45.0%
CAGAGTGCAACGGAAAAACT+TGG + Chr4:55690796-55690815 None:intergenic 45.0%
CCATATCCAAATATGGGCCA+CGG + Chr4:55692622-55692641 None:intergenic 45.0%
CGCACAGGTTTCAGAAAAGA+AGG - Chr4:55691539-55691558 MsG0480021240.01.T01:intron 45.0%
CGCCATACAAGCCATTTGTA+TGG + Chr4:55692650-55692669 None:intergenic 45.0%
CTGCCAGACACAATTGATGT+TGG - Chr4:55692098-55692117 MsG0480021240.01.T01:intron 45.0%
GCACCATTCACAAACCTGTA+AGG + Chr4:55690083-55690102 None:intergenic 45.0%
GGAAAATTCTCTGGATCGGA+AGG + Chr4:55691339-55691358 None:intergenic 45.0%
GGCCTATCATTTACAAGGCT+TGG + Chr4:55690154-55690173 None:intergenic 45.0%
GGTTAAGAAGTCAGCTCCAA+TGG + Chr4:55690029-55690048 None:intergenic 45.0%
GGTTTCAGAAAAGAAGGCTC+GGG - Chr4:55691545-55691564 MsG0480021240.01.T01:intron 45.0%
TCTGACACTGACACATGTGT+AGG + Chr4:55689309-55689328 None:intergenic 45.0%
TTGGAAACAGCAATCAGCCA+AGG - Chr4:55692117-55692136 MsG0480021240.01.T01:intron 45.0%
TTGGACAGTACACTTTGGTG+GGG - Chr4:55690858-55690877 MsG0480021240.01.T01:intron 45.0%
TTGGTCACTGGACACATCTT+CGG - Chr4:55689367-55689386 MsG0480021240.01.T01:intron 45.0%
! ACGGGATTGTGTATGGGTTT+TGG - Chr4:55690534-55690553 MsG0480021240.01.T01:intron 45.0%
! AGAGCAAACCATGTTGGTTG+CGG - Chr4:55692477-55692496 MsG0480021240.01.T01:intron 45.0%
! AGGAGTTGCTTTCTATCGTG+GGG - Chr4:55691109-55691128 MsG0480021240.01.T01:intron 45.0%
! CGGGATTGTGTATGGGTTTT+GGG - Chr4:55690535-55690554 MsG0480021240.01.T01:intron 45.0%
! CTAGGAGTTGCTTTCTATCG+TGG - Chr4:55691107-55691126 MsG0480021240.01.T01:intron 45.0%
! TTGCAGATTTGGGATACAGC+TGG - Chr4:55691065-55691084 MsG0480021240.01.T01:intron 45.0%
! TTTCAGGGCATCCTTTGCTA+TGG + Chr4:55691652-55691671 None:intergenic 45.0%
!! GCACTCTGAAGAGCCTTTTT+CGG - Chr4:55690808-55690827 MsG0480021240.01.T01:intron 45.0%
!! GGATATTGGTGGCAGGTTTT+TGG - Chr4:55692559-55692578 MsG0480021240.01.T01:exon 45.0%
!! GTTGTTGATGATTTGCAGGG+TGG - Chr4:55689610-55689629 MsG0480021240.01.T01:intron 45.0%
!! TGTTGATGATTTGCAGGGTG+GGG - Chr4:55689612-55689631 MsG0480021240.01.T01:intron 45.0%
!! TTCCTCTTCCCCACTTTTCA+GGG + Chr4:55691667-55691686 None:intergenic 45.0%
!!! AGGTTTTTGGCTTTTCGCCA+TGG - Chr4:55692572-55692591 MsG0480021240.01.T01:five_prime_UTR 45.0%
ACACGACACATGTTGGTCAC+TGG - Chr4:55689355-55689374 MsG0480021240.01.T01:intron 50.0%
AGACATGCGGGACATTGTGT+AGG - Chr4:55689326-55689345 MsG0480021240.01.T01:intron 50.0%
AGCAATCAGCCAAGGTCATC+AGG - Chr4:55692125-55692144 MsG0480021240.01.T01:intron 50.0%
CAAATATCGGTCATGGGCCA+TGG - Chr4:55692535-55692554 MsG0480021240.01.T01:CDS 50.0%
CAACCTTAACAACTGGAGGG+AGG - Chr4:55691181-55691200 MsG0480021240.01.T01:intron 50.0%
CACTCACATCCTGATGACCT+TGG + Chr4:55692137-55692156 None:intergenic 50.0%
CAGCATTACCGCAACCAACA+TGG + Chr4:55692488-55692507 None:intergenic 50.0%
CAGGAGAGATTCCAAAGCCT+AGG - Chr4:55691089-55691108 MsG0480021240.01.T01:intron 50.0%
CCGTGGCCCATATTTGGATA+TGG - Chr4:55692619-55692638 MsG0480021240.01.T01:five_prime_UTR 50.0%
CTGTGAAATAGCGGCTATGG+CGG - Chr4:55689782-55689801 MsG0480021240.01.T01:intron 50.0%
GCAAAGGATGCCCTGAAAAG+TGG - Chr4:55691654-55691673 MsG0480021240.01.T01:intron 50.0%
GGAGGAAGAGTTAACCGCTT+TGG + Chr4:55688897-55688916 None:intergenic 50.0%
GTCATCATTCTCGGTGACAG+CGG - Chr4:55688957-55688976 MsG0480021240.01.T01:intron 50.0%
TCATCATTCTCGGTGACAGC+GGG - Chr4:55688958-55688977 MsG0480021240.01.T01:intron 50.0%
TCTAGCCGTTGCTGTCTATG+AGG - Chr4:55692223-55692242 MsG0480021240.01.T01:intron 50.0%
TGTGTCAGTGTCAGACATGC+GGG - Chr4:55689314-55689333 MsG0480021240.01.T01:intron 50.0%
! GGGCATCCTTTGCTATGGTT+TGG + Chr4:55691647-55691666 None:intergenic 50.0%
!! AAGAGCGTTCTTCTACGGGA+AGG + Chr4:55688933-55688952 None:intergenic 50.0%
!! CTAGGCTTTGGAATCTCTCC+TGG + Chr4:55691091-55691110 None:intergenic 50.0%
!! CTTCCTCTTCCCCACTTTTC+AGG + Chr4:55691668-55691687 None:intergenic 50.0%
!! TCATGGGCCATGGTGGATAT+TGG - Chr4:55692545-55692564 MsG0480021240.01.T01:CDS 50.0%
!! TGATGGTGGGAACAGTAGAG+TGG - Chr4:55691389-55691408 MsG0480021240.01.T01:intron 50.0%
!!! TGGCTTGTATGGCGGGTTTT+TGG - Chr4:55692656-55692675 MsG0480021240.01.T01:five_prime_UTR 50.0%
ATATCGGTCATGGGCCATGG+TGG - Chr4:55692538-55692557 MsG0480021240.01.T01:CDS 55.0%
CAGAAAAGAAGGCTCGGGCA+TGG - Chr4:55691550-55691569 MsG0480021240.01.T01:intron 55.0%
CCTGCCACCAATATCCACCA+TGG + Chr4:55692555-55692574 None:intergenic 55.0%
GACAGCGACACGACACATGT+TGG - Chr4:55689348-55689367 MsG0480021240.01.T01:intron 55.0%
TGCCCTGAAAAGTGGGGAAG+AGG - Chr4:55691662-55691681 MsG0480021240.01.T01:intron 55.0%
! GATTTGGGATACAGCTGGCC+AGG - Chr4:55691070-55691089 MsG0480021240.01.T01:intron 55.0%
! TTTGAAAGATGGTGGCGCCG+TGG - Chr4:55692602-55692621 MsG0480021240.01.T01:five_prime_UTR 55.0%
!! CCATGGTGGATATTGGTGGC+AGG - Chr4:55692552-55692571 MsG0480021240.01.T01:exon 55.0%
!! CGGGAAGGCATCGTTCAGAT+CGG + Chr4:55688918-55688937 None:intergenic 55.0%
!! GAAGGCATCGTTCAGATCGG+AGG + Chr4:55688915-55688934 None:intergenic 55.0%
!! TGGGCCATGGTGGATATTGG+TGG - Chr4:55692548-55692567 MsG0480021240.01.T01:exon 55.0%
CGGGCATGGTGTGCAGCAAA+AGG - Chr4:55691564-55691583 MsG0480021240.01.T01:intron 60.0%
GTGGCGCCGTGGCCCATATT+TGG - Chr4:55692613-55692632 MsG0480021240.01.T01:five_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 55688688 55692803 55688688 ID=MsG0480021240.01;Name=MsG0480021240.01
Chr4 mRNA 55688688 55692803 55688688 ID=MsG0480021240.01.T01;Parent=MsG0480021240.01;Name=MsG0480021240.01.T01;_AED=0.48;_eAED=0.48;_QI=239|0.5|0.71|0.71|1|1|7|0|223
Chr4 exon 55688688 55688699 55688688 ID=MsG0480021240.01.T01:exon:6835;Parent=MsG0480021240.01.T01
Chr4 exon 55688830 55688962 55688830 ID=MsG0480021240.01.T01:exon:6834;Parent=MsG0480021240.01.T01
Chr4 exon 55689800 55689945 55689800 ID=MsG0480021240.01.T01:exon:6833;Parent=MsG0480021240.01.T01
Chr4 exon 55690081 55690161 55690081 ID=MsG0480021240.01.T01:exon:6832;Parent=MsG0480021240.01.T01
Chr4 exon 55690274 55690420 55690274 ID=MsG0480021240.01.T01:exon:6831;Parent=MsG0480021240.01.T01
Chr4 exon 55691404 55691503 55691404 ID=MsG0480021240.01.T01:exon:6830;Parent=MsG0480021240.01.T01
Chr4 exon 55692512 55692803 55692512 ID=MsG0480021240.01.T01:exon:6829;Parent=MsG0480021240.01.T01
Chr4 five_prime_UTR 55692565 55692803 55692565 ID=MsG0480021240.01.T01:five_prime_utr;Parent=MsG0480021240.01.T01
Chr4 CDS 55692512 55692564 55692512 ID=MsG0480021240.01.T01:cds;Parent=MsG0480021240.01.T01
Chr4 CDS 55691404 55691503 55691404 ID=MsG0480021240.01.T01:cds;Parent=MsG0480021240.01.T01
Chr4 CDS 55690274 55690420 55690274 ID=MsG0480021240.01.T01:cds;Parent=MsG0480021240.01.T01
Chr4 CDS 55690081 55690161 55690081 ID=MsG0480021240.01.T01:cds;Parent=MsG0480021240.01.T01
Chr4 CDS 55689800 55689945 55689800 ID=MsG0480021240.01.T01:cds;Parent=MsG0480021240.01.T01
Chr4 CDS 55688830 55688962 55688830 ID=MsG0480021240.01.T01:cds;Parent=MsG0480021240.01.T01
Chr4 CDS 55688688 55688699 55688688 ID=MsG0480021240.01.T01:cds;Parent=MsG0480021240.01.T01
Gene Sequence

>MsG0480021240.01.T01

ATGCCTTCCCGTAGAAGAACGCTCTTGAAAGTCATCATTCTCGGTGACAGCGGATATGTGAATAAGAAGTTTAGTAATCAGTACAAGGCAACCATTGGAGCTGACTTCTTAACCAAAGAAGTGCAATTTGAAGATAGGCTTTTCACCTTACAGATTTGGGATACAGCTGGCCAGGAGAGATTCCAAAGCCTAGGAGTTGCTTTCTATCGTGGGGCTGATTGCTGTGTTCTTGTATATGATGTTAATTCAATGAAATCATTTGACAACCTTAACAACTGGAGGGAGGAATTTCTGATTCAAGCAAATCCTTCCGATCCAGAGAATTTTCCTTTTGTTGTTATAGGAAACAAGATCGACATTGATGGTGGGAACAGTAGAGTGGTTTCAGAAAAGAAGGCTCGGGCATGGTGTGCAGCAAAAGGAAATATACCATATTTTGAGACATCTGCCAAAGAAGGTATTAATGTCGAAGAAGCATTCCAAACCATAGCAAAGGATGCCCTGAAAAGTGGGGAAGAGGAAGAATTTGTTGTCAAATATCGGTCATGGGCCATGGTGGATATTGGTGGCAGGTTTTTGGCTTTTCGCCATGGCCAATTTTTTGAAAGATGGTGGCGCCGTGGCCCATATTTGGATATGGCTGTTCCATACAAATGGCTTGGAAGGTTGTGA

Protein sequence

>MsG0480021240.01.T01

MPSRRRTLLKVIILGDSGYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQANPSDPENFPFVVIGNKIDIDGGNSRVVSEKKARAWCAAKGNIPYFETSAKEGINVEEAFQTIAKDALKSGEEEEFVVKYRSWAMVDIGGRFLAFRHGQFFERWWRRGPYLDMAVPYKWLGRL*