AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480023318.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023318.01.T01 MTR_8g090215 78.423 241 18 2 1 241 1 207 5.47e-128 360
MsG0480023318.01.T01 MTR_3g087160 73.029 241 30 3 1 241 1 206 1.00e-115 330
MsG0480023318.01.T01 MTR_5g013900 64.730 241 51 2 1 241 1 207 3.40e-103 298
MsG0480023318.01.T01 MTR_4g098950 65.145 241 49 3 1 241 1 206 9.93e-103 296
MsG0480023318.01.T01 MTR_1g094220 40.994 161 86 2 9 169 31 182 5.05e-34 121
MsG0480023318.01.T01 MTR_1g094220 40.994 161 86 2 9 169 31 182 6.22e-34 121
MsG0480023318.01.T01 MTR_1g094220 40.994 161 86 2 9 169 31 182 8.57e-34 121
MsG0480023318.01.T01 MTR_1g094220 40.994 161 86 2 9 169 31 182 1.08e-33 122
MsG0480023318.01.T01 MTR_8g031870 40.606 165 80 2 10 170 7 157 2.12e-33 119
MsG0480023318.01.T01 MTR_5g076590 38.994 159 87 1 11 169 12 160 2.73e-33 119
MsG0480023318.01.T01 MTR_8g031680 39.344 183 96 4 10 187 7 179 4.99e-33 119
MsG0480023318.01.T01 MTR_8g103550 39.645 169 92 2 1 169 1 159 1.42e-32 117
MsG0480023318.01.T01 MTR_3g064390 38.365 159 88 1 11 169 12 160 1.68e-32 117
MsG0480023318.01.T01 MTR_8g031660 40.373 161 86 2 10 170 7 157 5.71e-32 116
MsG0480023318.01.T01 MTR_8g031830 40.000 165 81 2 10 170 7 157 6.00e-32 116
MsG0480023318.01.T01 MTR_4g064897 33.659 205 111 6 10 209 13 197 3.71e-31 114
MsG0480023318.01.T01 MTR_2g102060 36.810 163 85 2 11 169 12 160 1.90e-29 109
MsG0480023318.01.T01 MTR_2g027660 34.783 161 95 2 10 170 7 157 2.66e-29 109
MsG0480023318.01.T01 MTR_6g021790 35.404 161 94 2 10 170 7 157 4.25e-29 109
MsG0480023318.01.T01 MTR_7g051940 35.404 161 94 1 10 170 14 164 6.79e-29 108
MsG0480023318.01.T01 MTR_8g027220 36.559 186 97 5 10 191 27 195 1.07e-28 108
MsG0480023318.01.T01 MTR_6g079550 34.637 179 104 4 10 188 13 178 2.14e-28 107
MsG0480023318.01.T01 MTR_2g005500 34.715 193 109 3 10 202 10 185 5.63e-28 105
MsG0480023318.01.T01 MTR_7g405790 36.970 165 86 4 10 170 16 166 6.44e-28 106
MsG0480023318.01.T01 MTR_3g069510 33.333 180 101 5 10 184 13 178 1.03e-27 105
MsG0480023318.01.T01 MTR_7g081700 36.646 161 92 1 10 170 9 159 2.67e-27 104
MsG0480023318.01.T01 MTR_7g100020 34.896 192 110 5 11 200 17 195 3.94e-27 104
MsG0480023318.01.T01 MTR_1g068740 34.375 192 111 5 11 200 17 195 5.88e-27 103
MsG0480023318.01.T01 MTR_1g078200 34.375 160 95 1 10 169 15 164 6.30e-27 103
MsG0480023318.01.T01 MTR_3g086980 32.515 163 96 2 10 170 17 167 6.35e-27 103
MsG0480023318.01.T01 MTR_8g089985 32.515 163 96 2 10 170 18 168 6.94e-27 103
MsG0480023318.01.T01 MTR_1g068730 34.375 192 111 5 11 200 17 195 8.98e-27 103
MsG0480023318.01.T01 MTR_8g036220 31.288 163 98 2 10 170 17 167 1.26e-26 103
MsG0480023318.01.T01 MTR_2g005510 31.163 215 124 7 10 215 16 215 1.78e-26 102
MsG0480023318.01.T01 MTR_0262s0050 31.551 187 111 3 10 196 16 185 5.07e-26 101
MsG0480023318.01.T01 MTR_8g006970 35.404 161 94 1 10 170 23 173 5.25e-26 101
MsG0480023318.01.T01 MTR_1g115325 36.646 161 91 3 11 170 17 167 6.66e-26 100
MsG0480023318.01.T01 MTR_2g090865 32.258 217 120 7 10 221 12 206 6.73e-26 100
MsG0480023318.01.T01 MTR_8g006970 35.404 161 94 1 10 170 9 159 1.00e-25 99.8
MsG0480023318.01.T01 MTR_2g075950 33.333 165 92 4 10 170 14 164 1.60e-25 100
MsG0480023318.01.T01 MTR_2g096550 35.404 161 92 3 11 169 17 167 2.73e-25 99.4
MsG0480023318.01.T01 MTR_1g052475 31.383 188 117 3 10 195 16 193 3.14e-25 99.4
MsG0480023318.01.T01 MTR_8g093740 37.349 166 85 5 10 170 14 165 3.86e-25 99.0
MsG0480023318.01.T01 MTR_4g088090 29.108 213 127 4 10 218 14 206 7.94e-25 98.2
MsG0480023318.01.T01 MTR_2g014990 29.187 209 132 2 10 218 14 206 8.82e-25 98.2
MsG0480023318.01.T01 MTR_3g064390 37.778 135 74 1 11 145 12 136 1.16e-24 96.3
MsG0480023318.01.T01 MTR_4g079350 29.108 213 127 4 10 218 14 206 1.22e-24 97.8
MsG0480023318.01.T01 MTR_2g083860 32.727 165 93 4 10 170 14 164 1.24e-24 97.8
MsG0480023318.01.T01 MTR_1g062760 36.316 190 100 7 10 193 15 189 2.03e-24 97.1
MsG0480023318.01.T01 MTR_3g096350 36.458 192 95 7 10 192 13 186 2.04e-24 97.1
MsG0480023318.01.T01 MTR_1g090717 37.430 179 90 6 10 180 16 180 1.75e-23 94.4
MsG0480023318.01.T01 MTR_4g063160 34.021 194 111 6 11 200 17 197 1.91e-23 94.4
MsG0480023318.01.T01 MTR_7g117910 33.333 162 86 4 6 159 13 160 8.89e-23 92.8
MsG0480023318.01.T01 MTR_1g029450 33.537 164 94 4 10 170 18 169 2.97e-22 91.3
MsG0480023318.01.T01 MTR_7g103070 29.958 237 121 8 10 240 17 214 4.02e-22 90.9
MsG0480023318.01.T01 MTR_8g107070 35.758 165 88 3 10 170 15 165 5.58e-22 91.7
MsG0480023318.01.T01 MTR_4g099470 43.689 103 58 0 68 170 33 135 8.45e-22 89.4
MsG0480023318.01.T01 MTR_4g012940 34.731 167 92 4 11 170 10 166 1.72e-19 84.0
MsG0480023318.01.T01 MTR_4g069850 33.533 167 94 4 11 170 10 166 2.37e-19 83.6
MsG0480023318.01.T01 MTR_7g103070 33.526 173 88 5 70 240 11 158 4.24e-19 81.6
MsG0480023318.01.T01 MTR_2g101890 34.731 167 92 4 11 170 12 168 5.21e-19 82.4
MsG0480023318.01.T01 MTR_1g097420 27.311 238 126 6 11 241 10 207 8.23e-19 82.0
MsG0480023318.01.T01 MTR_8g093740 38.462 117 70 2 56 170 16 132 2.43e-18 80.1
MsG0480023318.01.T01 MTR_1g068730 33.582 134 79 2 11 144 17 140 4.24e-18 79.3
MsG0480023318.01.T01 MTR_1g068740 34.091 132 77 2 11 142 17 138 6.69e-18 79.3
MsG0480023318.01.T01 MTR_8g092020 32.530 166 95 4 11 169 14 169 9.28e-18 79.3
MsG0480023318.01.T01 MTR_3g096350 35.714 140 69 6 10 142 13 138 1.83e-16 74.3
MsG0480023318.01.T01 MTR_3g096350 37.594 133 64 5 10 137 13 131 3.94e-16 73.6
MsG0480023318.01.T01 MTR_3g078260 32.558 172 92 5 11 170 10 169 1.86e-15 73.2
MsG0480023318.01.T01 MTR_1g097420 26.638 229 121 6 20 241 46 234 2.40e-15 73.2
MsG0480023318.01.T01 MTR_2g090875 29.651 172 97 5 11 170 8 167 8.41e-13 65.5
MsG0480023318.01.T01 MTR_4g088055 29.070 172 98 5 11 170 8 167 4.92e-12 63.2
MsG0480023318.01.T01 MTR_4g113620 27.329 161 95 5 10 170 14 152 4.75e-11 60.8
MsG0480023318.01.T01 MTR_4g073250 27.907 172 100 5 11 170 8 167 7.51e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023318.01.T01 AT5G10260 68.050 241 43 2 1 241 1 207 1.68e-110 316
MsG0480023318.01.T01 AT2G22290 68.050 241 43 2 1 241 1 207 1.94e-110 316
MsG0480023318.01.T01 AT2G44610 65.702 242 48 3 1 241 1 208 4.61e-104 300
MsG0480023318.01.T01 AT4G39890 60.887 248 56 5 1 241 1 214 2.42e-89 263
MsG0480023318.01.T01 AT5G64990 60.086 233 65 3 10 241 8 213 2.34e-87 258
MsG0480023318.01.T01 AT5G64990 60.515 233 57 3 10 241 8 206 1.87e-86 255
MsG0480023318.01.T01 AT3G54840 41.615 161 85 2 9 169 33 184 3.67e-34 122
MsG0480023318.01.T01 AT3G54840 41.615 161 85 2 9 169 33 184 4.88e-34 121
MsG0480023318.01.T01 AT4G19640 38.750 160 88 1 11 170 12 161 1.54e-33 120
MsG0480023318.01.T01 AT3G54840 41.772 158 83 2 12 169 2 150 2.32e-33 119
MsG0480023318.01.T01 AT5G45130 38.750 160 88 1 11 170 12 161 2.89e-33 119
MsG0480023318.01.T01 AT5G45130 37.975 158 88 1 13 170 22 169 1.74e-31 115
MsG0480023318.01.T01 AT4G17170 34.783 161 95 2 10 170 7 157 1.31e-29 110
MsG0480023318.01.T01 AT4G17160 34.568 162 96 2 9 170 6 157 2.51e-29 109
MsG0480023318.01.T01 AT3G11730 35.294 187 110 2 10 195 9 185 4.80e-29 108
MsG0480023318.01.T01 AT1G07410 32.110 218 116 7 10 216 13 209 4.94e-29 109
MsG0480023318.01.T01 AT4G35860 34.783 161 95 2 10 170 7 157 1.45e-28 107
MsG0480023318.01.T01 AT4G18430 32.075 212 128 3 10 221 14 209 3.44e-28 107
MsG0480023318.01.T01 AT3G07410 34.392 189 112 3 10 196 13 191 4.25e-28 106
MsG0480023318.01.T01 AT1G02130 36.646 161 92 1 10 170 9 159 8.03e-28 105
MsG0480023318.01.T01 AT1G05810 35.593 177 92 5 10 182 13 171 8.30e-28 106
MsG0480023318.01.T01 AT5G65270 30.653 199 119 4 10 206 18 199 8.81e-28 106
MsG0480023318.01.T01 AT3G53610 33.333 207 123 5 11 215 17 210 1.21e-27 105
MsG0480023318.01.T01 AT3G53610 33.333 207 123 5 11 215 17 210 1.21e-27 105
MsG0480023318.01.T01 AT3G53610 33.333 207 123 5 11 215 17 210 1.21e-27 105
MsG0480023318.01.T01 AT5G59150 33.333 180 101 5 10 184 13 178 1.51e-27 105
MsG0480023318.01.T01 AT1G05810 35.593 177 92 5 10 182 59 217 1.66e-27 106
MsG0480023318.01.T01 AT5G47520 35.976 164 87 4 10 169 15 164 1.73e-27 105
MsG0480023318.01.T01 AT3G46830 33.333 180 101 5 10 184 13 178 2.36e-27 104
MsG0480023318.01.T01 AT3G46830 33.333 180 101 5 10 184 13 178 2.36e-27 104
MsG0480023318.01.T01 AT1G09630 33.523 176 106 2 10 184 13 178 2.51e-27 104
MsG0480023318.01.T01 AT4G39990 33.939 165 91 4 10 170 18 168 4.06e-27 104
MsG0480023318.01.T01 AT1G73640 35.758 165 88 4 10 170 14 164 5.25e-27 104
MsG0480023318.01.T01 AT2G31680 32.919 161 98 1 10 170 13 163 6.27e-27 103
MsG0480023318.01.T01 AT3G46060 34.197 193 112 5 11 201 17 196 6.50e-27 103
MsG0480023318.01.T01 AT3G46060 34.197 193 112 5 11 201 17 196 6.50e-27 103
MsG0480023318.01.T01 AT3G46060 34.197 193 112 5 11 201 17 196 6.50e-27 103
MsG0480023318.01.T01 AT1G18200 34.161 161 96 1 10 170 14 164 8.05e-27 103
MsG0480023318.01.T01 AT5G59840 33.679 193 113 5 11 201 17 196 1.44e-26 102
MsG0480023318.01.T01 AT4G17530 35.404 161 94 1 10 170 9 159 1.90e-26 102
MsG0480023318.01.T01 AT5G47200 33.333 186 107 3 10 195 9 177 1.98e-26 102
MsG0480023318.01.T01 AT4G19640 38.235 136 74 1 11 146 12 137 4.02e-26 99.8
MsG0480023318.01.T01 AT2G43130 35.152 165 89 4 10 170 13 163 4.52e-26 101
MsG0480023318.01.T01 AT3G15060 29.630 216 128 4 10 221 14 209 6.30e-26 101
MsG0480023318.01.T01 AT5G60860 29.577 213 126 4 10 218 14 206 1.97e-25 99.8
MsG0480023318.01.T01 AT4G35860 43.689 103 58 0 68 170 9 111 5.08e-25 97.4
MsG0480023318.01.T01 AT1G28550 28.507 221 142 3 10 230 14 218 6.27e-25 98.6
MsG0480023318.01.T01 AT3G12160 33.540 161 97 1 10 170 16 166 6.44e-25 98.6
MsG0480023318.01.T01 AT4G19640 37.415 147 78 2 11 157 12 144 6.82e-25 97.8
MsG0480023318.01.T01 AT1G01200 31.250 240 126 9 10 241 29 237 8.35e-25 98.6
MsG0480023318.01.T01 AT1G16920 31.677 161 100 1 10 170 14 164 1.77e-24 97.4
MsG0480023318.01.T01 AT5G47960 31.677 161 100 1 10 170 16 166 2.55e-24 97.1
MsG0480023318.01.T01 AT3G09900 32.692 208 125 4 11 216 17 211 3.20e-24 96.7
MsG0480023318.01.T01 AT1G43890 35.976 164 90 4 10 170 14 165 8.35e-24 95.5
MsG0480023318.01.T01 AT1G43890 35.976 164 90 4 10 170 14 165 8.35e-24 95.5
MsG0480023318.01.T01 AT1G43890 35.976 164 90 4 10 170 14 165 8.35e-24 95.5
MsG0480023318.01.T01 AT5G03520 33.333 192 113 4 11 200 17 195 8.38e-24 95.5
MsG0480023318.01.T01 AT2G33870 29.108 213 128 4 10 218 14 207 1.21e-23 95.1
MsG0480023318.01.T01 AT4G18800 32.335 167 91 5 10 170 14 164 1.00e-22 92.8
MsG0480023318.01.T01 AT5G03530 34.940 166 89 5 10 170 14 165 1.60e-22 92.0
MsG0480023318.01.T01 AT5G03530 34.940 166 89 5 10 170 14 165 1.60e-22 92.0
MsG0480023318.01.T01 AT5G45750 32.335 167 91 5 10 170 14 164 2.18e-22 91.7
MsG0480023318.01.T01 AT1G06400 30.435 161 102 1 10 170 14 164 2.69e-22 91.7
MsG0480023318.01.T01 AT5G59150 37.500 112 69 1 74 184 16 127 1.03e-21 88.6
MsG0480023318.01.T01 AT3G09910 34.518 197 107 6 10 198 14 196 4.04e-21 88.2
MsG0480023318.01.T01 AT3G09910 34.518 197 107 6 10 198 14 196 4.04e-21 88.2
MsG0480023318.01.T01 AT3G09910 34.518 197 107 6 10 198 14 196 4.04e-21 88.2
MsG0480023318.01.T01 AT3G18820 34.731 167 92 4 11 170 10 166 1.30e-20 86.7
MsG0480023318.01.T01 AT5G03520 42.308 104 59 1 68 170 54 157 1.38e-20 86.7
MsG0480023318.01.T01 AT3G09910 36.364 165 86 5 10 169 14 164 2.22e-20 85.9
MsG0480023318.01.T01 AT3G09910 36.364 165 86 5 10 169 14 164 2.22e-20 85.9
MsG0480023318.01.T01 AT1G52280 36.145 166 89 4 11 169 10 165 2.84e-20 85.9
MsG0480023318.01.T01 AT4G09720 28.571 238 122 7 11 241 10 206 8.02e-19 82.0
MsG0480023318.01.T01 AT5G39620 34.320 169 94 5 9 170 5 163 9.78e-19 81.6
MsG0480023318.01.T01 AT2G21880 34.911 169 87 4 11 169 11 166 1.32e-18 81.6
MsG0480023318.01.T01 AT1G49300 32.934 167 95 4 11 170 10 166 2.92e-18 80.5
MsG0480023318.01.T01 AT1G49300 32.934 167 95 4 11 170 10 166 2.92e-18 80.5
MsG0480023318.01.T01 AT3G16100 35.542 166 90 4 11 169 10 165 3.34e-18 80.5
MsG0480023318.01.T01 AT1G22740 26.471 238 124 7 11 241 10 203 3.52e-17 77.4
MsG0480023318.01.T01 AT4G09720 26.749 243 125 6 11 241 10 211 7.40e-17 77.0
MsG0480023318.01.T01 AT4G09720 26.908 249 123 7 11 241 10 217 2.13e-16 75.9
MsG0480023318.01.T01 AT3G48040 33.140 172 91 6 11 170 10 169 6.13e-15 71.6
MsG0480023318.01.T01 AT2G44690 32.558 172 92 7 11 170 20 179 8.12e-15 71.2
MsG0480023318.01.T01 AT3G48040 33.133 166 87 6 11 164 10 163 7.34e-14 68.2
MsG0480023318.01.T01 AT5G55080 27.439 164 106 6 7 170 11 161 1.80e-13 67.8
MsG0480023318.01.T01 AT5G46025 40.260 77 45 1 95 170 20 96 5.28e-13 63.9
MsG0480023318.01.T01 AT2G21880 31.361 169 85 5 11 169 11 158 2.64e-12 64.3
MsG0480023318.01.T01 AT5G62880 30.814 172 95 5 11 170 10 169 2.70e-12 64.3
MsG0480023318.01.T01 AT4G09720 29.016 193 99 6 56 241 11 172 3.51e-12 63.2
MsG0480023318.01.T01 AT4G09720 29.016 193 99 6 56 241 11 172 3.51e-12 63.2
MsG0480023318.01.T01 AT4G09720 29.016 193 99 6 56 241 11 172 3.51e-12 63.2
MsG0480023318.01.T01 AT2G21880 32.468 154 81 4 26 169 1 141 7.74e-12 62.8
MsG0480023318.01.T01 AT2G21880 32.468 154 81 4 26 169 1 141 7.74e-12 62.8
MsG0480023318.01.T01 AT4G28950 30.409 171 95 7 11 170 8 165 1.58e-11 62.4

Find 48 sgRNAs with CRISPR-Local

Find 120 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAGAAAACGAGCTTGTATT+TGG 0.223259 4:+83691501 None:intergenic
AACCCTTTCTTCTACAAATA+AGG 0.224029 4:-83689461 MsG0480023318.01.T01:CDS
TGAGACTTCTAAATCTTTCT+TGG 0.265565 4:+83690559 None:intergenic
CAAATTTGACACCACCTATC+AGG 0.340690 4:-83691428 MsG0480023318.01.T01:CDS
TCCTCCCTGCTGCTCTGTAT+TGG 0.354070 4:+83689396 None:intergenic
CTTCCTTATTTGTAGAAGAA+AGG 0.383495 4:+83689458 None:intergenic
GAGGAGGTTGCTCATGTTAG+AGG 0.391358 4:-83689378 None:intergenic
AAGATTGCTTCCGCCTTGCC+AGG 0.393556 4:-83689490 MsG0480023318.01.T01:CDS
GATGCCAAGTCAAAAGAGTT+TGG 0.394493 4:-83689838 MsG0480023318.01.T01:CDS
CATGAAGCGGGTGATGATAC+TGG 0.410880 4:+83691456 None:intergenic
GAAGAAAGGGTTTCCATCCC+TGG 0.417515 4:+83689472 None:intergenic
GTTTATCTTCTTTCCCATGT+TGG 0.420104 4:-83689566 MsG0480023318.01.T01:CDS
TTCCTTATTTGTAGAAGAAA+GGG 0.422408 4:+83689459 None:intergenic
GAAGAATCTCTTATGTAGCT+TGG 0.431932 4:+83690534 None:intergenic
TGCTTCCGCCTTGCCAGGGA+TGG 0.448090 4:-83689485 MsG0480023318.01.T01:CDS
TTCATCCAATACAGAGCAGC+AGG 0.451660 4:-83689401 MsG0480023318.01.T01:CDS
AAACTGATCTTGTCGAGAAA+AGG 0.473751 4:-83690205 MsG0480023318.01.T01:intron
TTCTTAGGCGATCAATCCGT+TGG 0.478079 4:-83691484 MsG0480023318.01.T01:CDS
AGGCAAGTTTCTATAGAAGA+AGG 0.486341 4:-83689862 MsG0480023318.01.T01:CDS
GATGTTATAATTGTCTTGGT+TGG 0.487954 4:-83690233 MsG0480023318.01.T01:CDS
TAGTGATGTTATAATTGTCT+TGG 0.496039 4:-83690237 MsG0480023318.01.T01:CDS
ATCGAAACCAGTGCAAAAGC+AGG 0.513342 4:-83689805 MsG0480023318.01.T01:CDS
AATGAAGAATTGAACCTGAT+AGG 0.522083 4:+83691414 None:intergenic
AATACAGAGCAGCAGGGAGG+AGG 0.528419 4:-83689394 MsG0480023318.01.T01:CDS
TTAACTTTCAGGGATACTGC+AGG 0.536162 4:-83690582 MsG0480023318.01.T01:intron
GTATTGGATGAATGCACTGT+GGG 0.541454 4:+83689412 None:intergenic
AAATTTGTCGTACATGAAGC+GGG 0.551096 4:+83691444 None:intergenic
AAAAGCAGGCTTCAATATCA+AGG 0.552081 4:-83689791 MsG0480023318.01.T01:intron
CACTAACAAGTGGGTTGAGG+AGG 0.553351 4:-83690276 MsG0480023318.01.T01:CDS
GAACACTAACAAGTGGGTTG+AGG 0.553502 4:-83690279 MsG0480023318.01.T01:CDS
TTCTACAAATAAGGAAGACA+TGG 0.563578 4:-83689452 MsG0480023318.01.T01:CDS
AGATTGCTTCCGCCTTGCCA+GGG 0.573903 4:-83689489 MsG0480023318.01.T01:CDS
CAAATTTGTCGTACATGAAG+CGG 0.575167 4:+83691443 None:intergenic
AAGGGTTTCCATCCCTGGCA+AGG 0.588850 4:+83689477 None:intergenic
TGAGGACACAAGAACCAACA+TGG 0.589042 4:+83689552 None:intergenic
CATTTCTGAACACTAACAAG+TGG 0.594464 4:-83690286 MsG0480023318.01.T01:CDS
ATTTCTCTCATAAATGGCGA+CGG 0.612804 4:-83691536 None:intergenic
ATTTCTGAACACTAACAAGT+GGG 0.616106 4:-83690285 MsG0480023318.01.T01:CDS
GAAGCAATCTTACGAAACAA+AGG 0.623923 4:+83689502 None:intergenic
ACGAGCTTGTATTTGGCGAG+AGG 0.624355 4:+83691508 None:intergenic
TGCATTGACAGATAACAATG+AGG 0.628007 4:+83689534 None:intergenic
GAGGAGGTGCGTCAAGAACG+TGG 0.657614 4:-83690260 MsG0480023318.01.T01:CDS
TGTATTGGATGAATGCACTG+TGG 0.660739 4:+83689411 None:intergenic
GAGGACACAAGAACCAACAT+GGG 0.673611 4:+83689553 None:intergenic
TCCAATACAGAGCAGCAGGG+AGG 0.703010 4:-83689397 MsG0480023318.01.T01:CDS
GGTTTCCATCCCTGGCAAGG+CGG 0.703532 4:+83689480 None:intergenic
GAAGAATTGAACCTGATAGG+TGG 0.713334 4:+83691417 None:intergenic
TCATCCAATACAGAGCAGCA+GGG 0.714266 4:-83689400 MsG0480023318.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAAATGTGATTTATTAA+GGG + Chr4:83689686-83689705 None:intergenic 10.0%
!!! TTAATAAATCACATTTTTAA+GGG - Chr4:83689686-83689705 MsG0480023318.01.T01:intron 10.0%
!! AAAAAAAATATAAATTGACG+AGG + Chr4:83690189-83690208 None:intergenic 15.0%
!! AAATTTGATCATATAATTTC+AGG - Chr4:83690081-83690100 MsG0480023318.01.T01:intron 15.0%
!! CTTAAAAATGTGATTTATTA+AGG + Chr4:83689687-83689706 None:intergenic 15.0%
!! GTTAATGAAATTAATTGAAT+TGG + Chr4:83690951-83690970 None:intergenic 15.0%
!! TATCGTTATTTAACTAAAAA+AGG + Chr4:83690538-83690557 None:intergenic 15.0%
!! TCAATTAATTTCATTAACAA+AGG - Chr4:83690953-83690972 MsG0480023318.01.T01:intron 15.0%
!!! ACAATGAATTTTAAAAAAAC+TGG + Chr4:83689740-83689759 None:intergenic 15.0%
!!! CTTAATAAATCACATTTTTA+AGG - Chr4:83689685-83689704 MsG0480023318.01.T01:intron 15.0%
!!! GGTCTAATTATTTTTTTATA+TGG - Chr4:83691006-83691025 MsG0480023318.01.T01:intron 15.0%
!!! GTTTTTGTTTAATATCATAT+TGG - Chr4:83690790-83690809 MsG0480023318.01.T01:intron 15.0%
!! AATTAATTGAATTGGCTATA+AGG + Chr4:83690943-83690962 None:intergenic 20.0%
!! AGGTTAATAACTATAAATTG+AGG + Chr4:83690568-83690587 None:intergenic 20.0%
!! ATGAATATATAGATCAAACT+CGG + Chr4:83690739-83690758 None:intergenic 20.0%
!! CAATCACATAAAAAATCATA+GGG + Chr4:83689634-83689653 None:intergenic 20.0%
!! TATTCGATGTAAAACAAAAT+AGG + Chr4:83691289-83691308 None:intergenic 20.0%
!! TCAGAAATAGTAAAAAGAAA+AGG + Chr4:83690290-83690309 None:intergenic 20.0%
!! TTCCAACATCATATAATAAA+CGG - Chr4:83689984-83690003 MsG0480023318.01.T01:intron 20.0%
!!! AATTCTGATGATTTTTTAAG+AGG - Chr4:83689881-83689900 MsG0480023318.01.T01:intron 20.0%
!!! GCTTTTATGTTAGAATATTA+TGG - Chr4:83689903-83689922 MsG0480023318.01.T01:intron 20.0%
!!! TTAGTGTATTTTAACTTTCA+GGG - Chr4:83690312-83690331 MsG0480023318.01.T01:intron 20.0%
! AGATGATGCATTATGATTTA+TGG - Chr4:83690232-83690251 MsG0480023318.01.T01:CDS 25.0%
! AGATTGATCATTCAAGAATT+AGG - Chr4:83689761-83689780 MsG0480023318.01.T01:intron 25.0%
! ATATAATTTCAGGCTACTAT+CGG - Chr4:83690091-83690110 MsG0480023318.01.T01:intron 25.0%
! CCAATCACATAAAAAATCAT+AGG + Chr4:83689635-83689654 None:intergenic 25.0%
! TAGCAAAATTACAAAGAACA+TGG + Chr4:83690891-83690910 None:intergenic 25.0%
! TAGTGATGTTATAATTGTCT+TGG - Chr4:83690667-83690686 MsG0480023318.01.T01:intron 25.0%
! TTAGATGTGAAAGTTAGTAA+AGG + Chr4:83691257-83691276 None:intergenic 25.0%
! TTCACGTGAATTCATAATTA+TGG - Chr4:83689594-83689613 MsG0480023318.01.T01:intron 25.0%
! TTTCAAATATTGCGATGTTA+TGG - Chr4:83690985-83691004 MsG0480023318.01.T01:intron 25.0%
!! AAATTTTCTGTTAGCAATCT+AGG + Chr4:83690067-83690086 None:intergenic 25.0%
!! AATGAATTTTCATAGTTGCT+TGG - Chr4:83691144-83691163 MsG0480023318.01.T01:intron 25.0%
!! ATGAATTTTCATAGTTGCTT+GGG - Chr4:83691145-83691164 MsG0480023318.01.T01:intron 25.0%
!! TTCCTTATTTGTAGAAGAAA+GGG + Chr4:83691448-83691467 None:intergenic 25.0%
!! TTCTCAATTTCAATTTTGCA+TGG - Chr4:83689519-83689538 MsG0480023318.01.T01:CDS 25.0%
!!! CCTATGATTTTTTATGTGAT+TGG - Chr4:83689632-83689651 MsG0480023318.01.T01:intron 25.0%
!!! CTTAGTGTATTTTAACTTTC+AGG - Chr4:83690311-83690330 MsG0480023318.01.T01:intron 25.0%
!!! CTTTGTAATTTTGCTATGAT+AGG - Chr4:83690895-83690914 MsG0480023318.01.T01:intron 25.0%
AACCCTTTCTTCTACAAATA+AGG - Chr4:83691443-83691462 MsG0480023318.01.T01:CDS 30.0%
AATGAAGAATTGAACCTGAT+AGG + Chr4:83689493-83689512 None:intergenic 30.0%
ATTTCTGAACACTAACAAGT+GGG - Chr4:83690619-83690638 MsG0480023318.01.T01:intron 30.0%
CAACATCATATAATAAACGG+AGG - Chr4:83689987-83690006 MsG0480023318.01.T01:intron 30.0%
CTCCGTTTATTATATGATGT+TGG + Chr4:83689989-83690008 None:intergenic 30.0%
GATGTTATAATTGTCTTGGT+TGG - Chr4:83690671-83690690 MsG0480023318.01.T01:intron 30.0%
TAAGAAAACGAGCTTGTATT+TGG + Chr4:83689406-83689425 None:intergenic 30.0%
TACATTAGAACAGCTTACTT+AGG + Chr4:83690588-83690607 None:intergenic 30.0%
TATGTGTTTGCATTTGAATC+TGG - Chr4:83690488-83690507 MsG0480023318.01.T01:intron 30.0%
TGAAACAAAAAACACCTACA+CGG + Chr4:83690267-83690286 None:intergenic 30.0%
TGAGACTTCTAAATCTTTCT+TGG + Chr4:83690348-83690367 None:intergenic 30.0%
TGTGAAAGTTAGTAAAGGTA+AGG + Chr4:83691252-83691271 None:intergenic 30.0%
TTCTACAAATAAGGAAGACA+TGG - Chr4:83691452-83691471 MsG0480023318.01.T01:CDS 30.0%
! AAATACAAGCTCGTTTTCTT+AGG - Chr4:83689405-83689424 MsG0480023318.01.T01:CDS 30.0%
! CTTCCTTATTTGTAGAAGAA+AGG + Chr4:83691449-83691468 None:intergenic 30.0%
! TCATTCATAAGTCACTTTCA+AGG - Chr4:83689845-83689864 MsG0480023318.01.T01:CDS 30.0%
AAAAGCAGGCTTCAATATCA+AGG - Chr4:83691113-83691132 MsG0480023318.01.T01:intron 35.0%
AAACTGATCTTGTCGAGAAA+AGG - Chr4:83690699-83690718 MsG0480023318.01.T01:intron 35.0%
AAACTTGCCTGTAAACAAAG+CGG + Chr4:83691032-83691051 None:intergenic 35.0%
AAATTTGTCGTACATGAAGC+GGG + Chr4:83689463-83689482 None:intergenic 35.0%
AACGAACAGTTCTATCTTCA+AGG + Chr4:83690144-83690163 None:intergenic 35.0%
AGGCAAGTTTCTATAGAAGA+AGG - Chr4:83691042-83691061 MsG0480023318.01.T01:intron 35.0%
CAAATTTGTCGTACATGAAG+CGG + Chr4:83689464-83689483 None:intergenic 35.0%
CATTTCTGAACACTAACAAG+TGG - Chr4:83690618-83690637 MsG0480023318.01.T01:intron 35.0%
GAAGAATCTCTTATGTAGCT+TGG + Chr4:83690373-83690392 None:intergenic 35.0%
GAAGCAATCTTACGAAACAA+AGG + Chr4:83691405-83691424 None:intergenic 35.0%
GGTTTCAACGACTCAAATTA+TGG + Chr4:83689789-83689808 None:intergenic 35.0%
GTTTATCTTCTTTCCCATGT+TGG - Chr4:83691338-83691357 MsG0480023318.01.T01:CDS 35.0%
TAAGCTGTTCTAATGTAGAC+AGG - Chr4:83690591-83690610 MsG0480023318.01.T01:intron 35.0%
TAGCAATCTAGGAACATAGA+GGG + Chr4:83690056-83690075 None:intergenic 35.0%
TTAGCAATCTAGGAACATAG+AGG + Chr4:83690057-83690076 None:intergenic 35.0%
! TGCATTGACAGATAACAATG+AGG + Chr4:83691373-83691392 None:intergenic 35.0%
!! GATTCCAAACTCTTTTGACT+TGG + Chr4:83691073-83691092 None:intergenic 35.0%
AACCATACCCAGTCAGAAAA+CGG + Chr4:83690768-83690787 None:intergenic 40.0%
AGCAATCTAGGAACATAGAG+GGG + Chr4:83690055-83690074 None:intergenic 40.0%
AGTCGTTGAAACCCTTGAAT+GGG - Chr4:83689796-83689815 MsG0480023318.01.T01:CDS 40.0%
ATGGTGCAATTTCTGCTTAG+TGG - Chr4:83689922-83689941 MsG0480023318.01.T01:intron 40.0%
CAAATTTGACACCACCTATC+AGG - Chr4:83689476-83689495 MsG0480023318.01.T01:CDS 40.0%
GAACTCTTCTTCCCATTCAA+GGG + Chr4:83689810-83689829 None:intergenic 40.0%
GAAGAATTGAACCTGATAGG+TGG + Chr4:83689490-83689509 None:intergenic 40.0%
GATCACATGCATCATAGTTG+AGG + Chr4:83691195-83691214 None:intergenic 40.0%
GATGCCAAGTCAAAAGAGTT+TGG - Chr4:83691066-83691085 MsG0480023318.01.T01:intron 40.0%
GTATTGGATGAATGCACTGT+GGG + Chr4:83691495-83691514 None:intergenic 40.0%
TGTATTGGATGAATGCACTG+TGG + Chr4:83691496-83691515 None:intergenic 40.0%
TTAACTTTCAGGGATACTGC+AGG - Chr4:83690322-83690341 MsG0480023318.01.T01:intron 40.0%
! ATTCACAACCGTTTTCTGAC+TGG - Chr4:83690757-83690776 MsG0480023318.01.T01:intron 40.0%
! TCTGCTTAGTGGATAAAGCT+TGG - Chr4:83689933-83689952 MsG0480023318.01.T01:intron 40.0%
! TTCACAACCGTTTTCTGACT+GGG - Chr4:83690758-83690777 MsG0480023318.01.T01:intron 40.0%
!! TATATGGCCGCTTTGTTTAC+AGG - Chr4:83691022-83691041 MsG0480023318.01.T01:intron 40.0%
!!! GATGATACTGGTTTTGCCAA+CGG + Chr4:83689439-83689458 None:intergenic 40.0%
AAACACCTACACGGCTACAA+CGG + Chr4:83690258-83690277 None:intergenic 45.0%
ATAGGTCAAGTGTCTTGCAG+TGG - Chr4:83690913-83690932 MsG0480023318.01.T01:intron 45.0%
ATCGAAACCAGTGCAAAAGC+AGG - Chr4:83691099-83691118 MsG0480023318.01.T01:intron 45.0%
CAGGCTTCAATATCAAGGTC+AGG - Chr4:83691118-83691137 MsG0480023318.01.T01:intron 45.0%
CGAACTCTTCTTCCCATTCA+AGG + Chr4:83689811-83689830 None:intergenic 45.0%
GAACTGTTCGTTTGCAGCTT+TGG - Chr4:83690152-83690171 MsG0480023318.01.T01:intron 45.0%
GAGGACACAAGAACCAACAT+GGG + Chr4:83691354-83691373 None:intergenic 45.0%
GAGTCGTTGAAACCCTTGAA+TGG - Chr4:83689795-83689814 MsG0480023318.01.T01:CDS 45.0%
GCAATCTAGGAACATAGAGG+GGG + Chr4:83690054-83690073 None:intergenic 45.0%
TCATCCAATACAGAGCAGCA+GGG - Chr4:83691504-83691523 MsG0480023318.01.T01:CDS 45.0%
TGAGGACACAAGAACCAACA+TGG + Chr4:83691355-83691374 None:intergenic 45.0%
TTCATCCAATACAGAGCAGC+AGG - Chr4:83691503-83691522 MsG0480023318.01.T01:CDS 45.0%
TTCTTAGGCGATCAATCCGT+TGG - Chr4:83689420-83689439 MsG0480023318.01.T01:CDS 45.0%
! AACCGTTTTCTGACTGGGTA+TGG - Chr4:83690763-83690782 MsG0480023318.01.T01:intron 45.0%
!! ATTGAAGCCTGCTTTTGCAC+TGG + Chr4:83691109-83691128 None:intergenic 45.0%
!! GAACACTAACAAGTGGGTTG+AGG - Chr4:83690625-83690644 MsG0480023318.01.T01:intron 45.0%
ACGAGCTTGTATTTGGCGAG+AGG + Chr4:83689399-83689418 None:intergenic 50.0%
CATGAAGCGGGTGATGATAC+TGG + Chr4:83689451-83689470 None:intergenic 50.0%
GAAGAAAGGGTTTCCATCCC+TGG + Chr4:83691435-83691454 None:intergenic 50.0%
! AGTTGAGGAGCATGCTCTAG+TGG + Chr4:83691180-83691199 None:intergenic 50.0%
!! CACTAACAAGTGGGTTGAGG+AGG - Chr4:83690628-83690647 MsG0480023318.01.T01:intron 50.0%
AAGATTGCTTCCGCCTTGCC+AGG - Chr4:83691414-83691433 MsG0480023318.01.T01:CDS 55.0%
AAGGGTTTCCATCCCTGGCA+AGG + Chr4:83691430-83691449 None:intergenic 55.0%
AATACAGAGCAGCAGGGAGG+AGG - Chr4:83691510-83691529 MsG0480023318.01.T01:CDS 55.0%
AGATTGCTTCCGCCTTGCCA+GGG - Chr4:83691415-83691434 MsG0480023318.01.T01:CDS 55.0%
TATGGCCGTTGTAGCCGTGT+AGG - Chr4:83690250-83690269 MsG0480023318.01.T01:CDS 55.0%
TCCAATACAGAGCAGCAGGG+AGG - Chr4:83691507-83691526 MsG0480023318.01.T01:CDS 55.0%
TCCTCCCTGCTGCTCTGTAT+TGG + Chr4:83691511-83691530 None:intergenic 55.0%
GGTTTCCATCCCTGGCAAGG+CGG + Chr4:83691427-83691446 None:intergenic 60.0%
! GAGGAGGTGCGTCAAGAACG+TGG - Chr4:83690644-83690663 MsG0480023318.01.T01:intron 60.0%
TGCTTCCGCCTTGCCAGGGA+TGG - Chr4:83691419-83691438 MsG0480023318.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 83689381 83691545 83689381 ID=MsG0480023318.01;Name=MsG0480023318.01
Chr4 mRNA 83689381 83691545 83689381 ID=MsG0480023318.01.T01;Parent=MsG0480023318.01;Name=MsG0480023318.01.T01;_AED=0.49;_eAED=0.56;_QI=0|0.5|0.6|1|0.5|0.6|5|0|241
Chr4 exon 83691328 83691545 83691328 ID=MsG0480023318.01.T01:exon:5996;Parent=MsG0480023318.01.T01
Chr4 exon 83690505 83690593 83690505 ID=MsG0480023318.01.T01:exon:5995;Parent=MsG0480023318.01.T01
Chr4 exon 83690206 83690317 83690206 ID=MsG0480023318.01.T01:exon:5994;Parent=MsG0480023318.01.T01
Chr4 exon 83689792 83689882 83689792 ID=MsG0480023318.01.T01:exon:5993;Parent=MsG0480023318.01.T01
Chr4 exon 83689381 83689596 83689381 ID=MsG0480023318.01.T01:exon:5992;Parent=MsG0480023318.01.T01
Chr4 CDS 83691328 83691545 83691328 ID=MsG0480023318.01.T01:cds;Parent=MsG0480023318.01.T01
Chr4 CDS 83690505 83690593 83690505 ID=MsG0480023318.01.T01:cds;Parent=MsG0480023318.01.T01
Chr4 CDS 83690206 83690317 83690206 ID=MsG0480023318.01.T01:cds;Parent=MsG0480023318.01.T01
Chr4 CDS 83689792 83689882 83689792 ID=MsG0480023318.01.T01:cds;Parent=MsG0480023318.01.T01
Chr4 CDS 83689381 83689596 83689381 ID=MsG0480023318.01.T01:cds;Parent=MsG0480023318.01.T01
Gene Sequence

>MsG0480023318.01.T01

ATGGCGACGGTTTCACCTCTCGCCAAATACAAGCTCGTTTTCTTAGGCGATCAATCCGTTGGCAAAACCAGTATCATCACCCGCTTCATGTACGACAAATTTGACACCACCTATCAGGTTCAATTCTTCATTCATTCATTCTCAATTTCAATTTTGCATGGATTATTCAGATCAAAACATTTACGATACGCGTTAATATATGTGTATTTAATCTTCACGGATACTGCAGGCCAAGAAAGATTTAGAAGTCTCATTCCAAGCTACATAAGAGATTCTTCTGTTGCAGTTATTGTATATGATGTAGCTAACAGGCAATCATTTCTGAACACTAACAAGTGGGTTGAGGAGGTGCGTCAAGAACGTGGTAGTGATGTTATAATTGTCTTGGTTGGAAACAAAACTGATCTTGTCGAGAAAAGGCAAGTTTCTATAGAAGAAGGAGATGCCAAGTCAAAAGAGTTTGGAATCATGTTTATCGAAACCAGTGCAAAAGCAGGCTTCAATATCAAGTTTTTCAAGTTTATCTTCTTTCCCATGTTGGTTCTTGTGTCCTCATTGTTATCTGTCAATGCAAAATCGCAGCCTTTGTTTCGTAAGATTGCTTCCGCCTTGCCAGGGATGGAAACCCTTTCTTCTACAAATAAGGAAGACATGGTTGACGTAAATTTAAAGCCCACAGTGCATTCATCCAATACAGAGCAGCAGGGAGGAGGTTGCTCATGTTAG

Protein sequence

>MsG0480023318.01.T01

MATVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQVQFFIHSFSISILHGLFRSKHLRYALIYVYLIFTDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTNKWVEEVRQERGSDVIIVLVGNKTDLVEKRQVSIEEGDAKSKEFGIMFIETSAKAGFNIKFFKFIFFPMLVLVSSLLSVNAKSQPLFRKIASALPGMETLSSTNKEDMVDVNLKPTVHSSNTEQQGGGCSC*