AlfalfaGEDB | MsG0480022872.01

M. sativa cultivar ZhongmuNo.1 / MsG0480022872.01

KEGG: -
GO: GO:0016021
PFAM: PF02721 PF02990

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022872.01.T01	XP_039684528.1	99.612	515	2	0	276	790	5	519	0	1070

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022872.01.T01	Q9ZPS7	87.938	514	61	1	277	790	8	520	0	943

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022872.01.T01	A0A396GMP8	99.612	515	2	0	276	790	5	519	0.0	1070

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048727.01	MsG0480022872.01	-0.829669	4.522292e-55	4.660035e-52
MsG0080048773.01	MsG0480022872.01	-0.803067	4.161262e-49	2.071167e-46
MsG0080048802.01	MsG0480022872.01	-0.804336	2.268074e-49	1.166361e-46
MsG0080048849.01	MsG0480022872.01	-0.835498	1.620104e-56	1.984728e-53
MsG0080048878.01	MsG0480022872.01	-0.819255	1.278376e-52	9.787619e-50
MsG0080049068.01	MsG0480022872.01	-0.863738	2.008473e-64	6.154400e-61
MsG0080049069.01	MsG0480022872.01	-0.864699	1.007545e-64	3.192633e-61
MsG0180000010.01	MsG0480022872.01	0.838675	2.497949e-57	3.369995e-54
MsG0180000026.01	MsG0480022872.01	-0.853710	1.995546e-61	4.351037e-58
MsG0180000129.01	MsG0480022872.01	-0.809960	1.461244e-50	8.698873e-48

Showing 1 to 10 of 227 entries

Previous1 2 3 4 5…23Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022872.01.T01	MTR_6g074910	85.910	511	71	1	280	790	7	516	0.0	928
MsG0480022872.01.T01	MTR_5g077170	75.195	512	126	1	280	790	8	519	0.0	810
MsG0480022872.01.T01	MTR_4g053270	46.063	508	264	3	289	792	19	520	6.24e-157	473
MsG0480022872.01.T01	MTR_8g088730	39.683	504	287	7	294	789	22	516	1.11e-123	386
MsG0480022872.01.T01	MTR_2g006300	39.641	502	288	7	294	789	18	510	8.25e-120	376
MsG0480022872.01.T01	MTR_8g016270	35.145	552	302	9	301	804	45	588	5.01e-102	331
MsG0480022872.01.T01	MTR_1g014080	33.092	553	312	10	301	804	34	577	3.53e-91	302
MsG0480022872.01.T01	MTR_3g105950	32.727	550	312	9	304	804	36	576	2.67e-88	294
MsG0480022872.01.T01	MTR_5g098730	27.208	566	323	15	299	790	42	592	7.92e-61	219
MsG0480022872.01.T01	MTR_3g082140	26.018	565	331	14	299	790	36	586	1.31e-57	210

Showing 1 to 10 of 13 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022872.01.T01	AT2G01970	87.938	514	61	1	277	790	8	520	0.0	943
MsG0480022872.01.T01	AT1G14670	87.873	503	61	0	288	790	18	520	0.0	913
MsG0480022872.01.T01	AT5G37310	81.188	505	95	0	286	790	17	521	0.0	868
MsG0480022872.01.T01	AT5G37310	81.188	505	95	0	286	790	17	521	0.0	868
MsG0480022872.01.T01	AT1G08350	49.126	515	257	4	280	792	9	520	3.14e-179	528
MsG0480022872.01.T01	AT1G08350	48.928	513	257	4	280	790	9	518	4.82e-177	525
MsG0480022872.01.T01	AT1G08350	48.928	513	257	4	280	790	9	518	4.82e-177	525
MsG0480022872.01.T01	AT1G08350	47.380	439	227	3	354	790	1	437	1.30e-144	438
MsG0480022872.01.T01	AT1G10950	38.677	499	291	7	297	789	27	516	1.76e-117	370
MsG0480022872.01.T01	AT3G13772	32.796	558	307	10	301	804	38	581	2.05e-94	311

Showing 1 to 10 of 21 entries

Previous1 2 3Next

Find 204 sgRNAs with CRISPR-Local

Find 636 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCCTGCCATTGCCATCT+GGG	0.456769	4:-77864780	None:intergenic
AAAGAAAAGACTGAAGCGCT+TGG	0.559289	4:+77863317	MsG0480022872.01.T01:CDS
AAAGAAGCCATAGCAGATGC+AGG	0.557569	4:-77867185	None:intergenic
AAAGAAGGAAGAGAAGAAAA+TGG	0.197169	4:+77861590	MsG0480022872.01.T01:CDS
AAAGACTGAAGCGCTTGGTG+AGG	0.652344	4:+77863322	MsG0480022872.01.T01:CDS
AAATAAAGCTCCTCGGTTGT+AGG	0.389595	4:-77864302	None:intergenic
AAATGGGAAGAAGTGTCTTA+TGG	0.378574	4:+77861607	MsG0480022872.01.T01:CDS
AACCCTGCCATTGCCATCTG+GGG	0.595625	4:-77864779	None:intergenic
AACTGTTGACAAAGAAGGAA+GGG	0.600661	4:+77863529	MsG0480022872.01.T01:CDS
AAGAAGGAAGAGAAGAAAAT+GGG	0.416275	4:+77861591	MsG0480022872.01.T01:CDS

Showing 1 to 10 of 204 entries

Previous1 2 3 4 5…21Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAACAACACGAGAAAAACAT+GGG	+	Chr4:77866692-77866711	MsG0480022872.01.T01:intron	30.0%
AAAGAAGGAAGAGAAGAAAA+TGG	+	Chr4:77861590-77861609	MsG0480022872.01.T01:CDS	30.0%
AAATTAGTTAGGTTTGGACT+TGG	-	Chr4:77866567-77866586	None:intergenic	30.0%
AAGAAGGAAGAGAAGAAAAT+GGG	+	Chr4:77861591-77861610	MsG0480022872.01.T01:CDS	30.0%
AAGTTGAATATAGAAGGAAG+TGG	-	Chr4:77864380-77864399	None:intergenic	30.0%
AATAAGTATGCAGTATGGTT+TGG	+	Chr4:77857751-77857770	MsG0480022872.01.T01:intron	30.0%
AATCGGATAGAAATGTAGAT+CGG	+	Chr4:77857237-77857256	MsG0480022872.01.T01:CDS	30.0%
AATTGGATAAATTATAGGGG+GGG	+	Chr4:77857469-77857488	MsG0480022872.01.T01:intron	30.0%
AATTGGATTACGGTTCAAAT+GGG	+	Chr4:77865877-77865896	MsG0480022872.01.T01:intron	30.0%
AATTTACCTGTTACACAGAA+TGG	-	Chr4:77861960-77861979	None:intergenic	30.0%

Showing 1 to 10 of 636 entries

Previous1 2 3 4 5…64Next

Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	77857221	77867226	77857221	ID=MsG0480022872.01;Name=MsG0480022872.01
Chr4	mRNA	77857221	77867226	77857221	ID=MsG0480022872.01.T01;Parent=MsG0480022872.01;Name=MsG0480022872.01.T01;_AED=0.52;_eAED=0.59;_QI=0\|0.5\|0.36\|0.63\|0.9\|0.81\|11\|0\|885
Chr4	exon	77857221	77857325	77857221	ID=MsG0480022872.01.T01:exon:23459;Parent=MsG0480022872.01.T01
Chr4	exon	77858963	77859230	77858963	ID=MsG0480022872.01.T01:exon:23460;Parent=MsG0480022872.01.T01
Chr4	exon	77859730	77859814	77859730	ID=MsG0480022872.01.T01:exon:23461;Parent=MsG0480022872.01.T01
Chr4	exon	77859887	77860219	77859887	ID=MsG0480022872.01.T01:exon:23462;Parent=MsG0480022872.01.T01
Chr4	exon	77861584	77861754	77861584	ID=MsG0480022872.01.T01:exon:23463;Parent=MsG0480022872.01.T01
Chr4	exon	77861932	77861972	77861932	ID=MsG0480022872.01.T01:exon:23464;Parent=MsG0480022872.01.T01
Chr4	exon	77863309	77863894	77863309	ID=MsG0480022872.01.T01:exon:23465;Parent=MsG0480022872.01.T01
Chr4	exon	77864013	77864150	77864013	ID=MsG0480022872.01.T01:exon:23466;Parent=MsG0480022872.01.T01
Chr4	exon	77864258	77864414	77864258	ID=MsG0480022872.01.T01:exon:23467;Parent=MsG0480022872.01.T01
Chr4	exon	77864503	77865014	77864503	ID=MsG0480022872.01.T01:exon:23468;Parent=MsG0480022872.01.T01
Chr4	exon	77866965	77867226	77866965	ID=MsG0480022872.01.T01:exon:23469;Parent=MsG0480022872.01.T01
Chr4	CDS	77857221	77857325	77857221	ID=MsG0480022872.01.T01:cds;Parent=MsG0480022872.01.T01
Chr4	CDS	77858963	77859230	77858963	ID=MsG0480022872.01.T01:cds;Parent=MsG0480022872.01.T01
Chr4	CDS	77859730	77859814	77859730	ID=MsG0480022872.01.T01:cds;Parent=MsG0480022872.01.T01
Chr4	CDS	77859887	77860219	77859887	ID=MsG0480022872.01.T01:cds;Parent=MsG0480022872.01.T01
Chr4	CDS	77861584	77861754	77861584	ID=MsG0480022872.01.T01:cds;Parent=MsG0480022872.01.T01
Chr4	CDS	77861932	77861972	77861932	ID=MsG0480022872.01.T01:cds;Parent=MsG0480022872.01.T01
Chr4	CDS	77863309	77863894	77863309	ID=MsG0480022872.01.T01:cds;Parent=MsG0480022872.01.T01
Chr4	CDS	77864013	77864150	77864013	ID=MsG0480022872.01.T01:cds;Parent=MsG0480022872.01.T01
Chr4	CDS	77864258	77864414	77864258	ID=MsG0480022872.01.T01:cds;Parent=MsG0480022872.01.T01
Chr4	CDS	77864503	77865014	77864503	ID=MsG0480022872.01.T01:cds;Parent=MsG0480022872.01.T01
Chr4	CDS	77866965	77867226	77866965	ID=MsG0480022872.01.T01:cds;Parent=MsG0480022872.01.T01

Gene Sequence

>MsG0480022872.01.T01

ATGGTTTTGAAAAACAAATCGGATAGAAATGTAGATCGGATAGAGAGGAGGAAGATGGTGCTGACATCACGATCAGATGAAGTTGTAGTGTGGCAGAGGGATGCCGGACGTAGGATCCAGGCATCAGTTCCTGAGGAGTTGGTTCAGCTCTTTAGAACGAGACTTTTCACTGGCTCTGTTTATATCATTTCCCGTTTTCGAATTGTGAGGAATCTGGGTTCTTATCGTGTCACTAACCATGGTTACCGTCTGGTTTTTAGTCTAGAGACCACTGCTATTGTGATTGTTGGAACATTGAGTCGTATGAACGATCTTTATTTCGTGGATTCATCTATGATTAGTAGACACCAGAGTGATTGTGACTTCTTGGCTGGATATACTTACGTGGAGAATGTCAAGGGTGTTTCTCAGATTTTTGTAGATCCTGATATAGTGCAGGTTGCTGATTTTATGAAAAGGTTAACTACTTGTGGAATTCCCGTCGATGGTCCTATTGACTCTTGTAATCCAGAGATGAGAGAATACGGCGAGGCTGATTTTTTGCTCTTCTACCCGAAAAAGACGATAGCTGAACTTGACTCAATCATTGAAGATGGGAAGTTTGTTATATCAGCATGTTTGACTGGATTTATTGATGGTGGTGATTGTTGGACCAATTCCCTTTCTTGCGAAGAGGTTGAGGAGGATGAATCAAGTTTGATAGGTGATCATGGAAATGCTGCTTATGAATTCCATTTAATTCAAAGGTTGATGAATGTTCTTGTCGATATTTGCTCTATTGATTCATTCCGAGAAGGAAAGAAGGAAGAGAAGAAAATGGGAAGAAGTGTCTTATGGATCCACCTGCTGATCTCTCTTCTCGCTGCCACTCACGTCAGATCCGATGCCTCCGATCATCGTTACAGCGACGGCGATGCCGTTCCTCTTTACGCCAATAAAGTCGGTCCCTTTCACAATCCCAGTGAAACGTATCGTTACCTTGACCTACCATTCTGTGTAACAGGTCACGAGAAAGAAAAGACTGAAGCGCTTGGTGAGGTGTTGAATGGAGATCGCCTTGTTAGTGCTCCTTATGAACTTAAGTTTAAAAAAGAGAAAGACTCTACGGTTGTCTGCAAGAAGACGCTCACAAGGGAGCAAGTTAATCAGTTCCGAGAGGCAGTTAAAAAGGACTATTATTTCCAAATGTATTACGATGACTTGCCAATCTGGGGATTTATTGGAACTGTTGACAAAGAAGGAAGGGCAGACCCGAGCGAGTATAAATATTTTCTTTACAAGCACATTCAGTTTGATGTTCTGTACAACAAAGATCGTGTGATTGAAATCAGTGCCCGTATGGACCCTCATTCTGTGGTTGACCTGACTGAGGACAGGGAAGTGGATGTTGAGTTTATGTACACAGTGAAATGGAAGGAAACTGATATTCCTTTTGAGAAGAGAATGGAAAAATACTCTCAGTCTTCTTCTCTTCCACATCACTTGGAGATTCACTGGTTCTCCATCATAAACTCCTGTGTGACGGTTCTTCTTTTGACTGGTTTCCTGGCAACCATTCTCATGCGTGTCTTGAAGAATGATTTTATGAAATATGCTCAAGACGAGGAAGCTGCTGATGATCAAGAGGAGACAGGATGGAAGTACATTCACGGCGATGTTTTCCGGTTTCCTAAGTTCAAGTCCATATTTGCAGCTGCCCTTGGTTCCGGCACTCAGTTATTCACTCTCACAATCTTCATTTTTATGCTTGCACTGGTTGGTGTATTCTATCCCTACAACCGAGGAGCTTTATTTACTGCACTCGTGGTCATATATGCTCTCACATCTGGAATTGCTGGATATACTGCCACTTCCTTCTATATTCAACTTGAAGGGACTAATTGGGTTAGAAACTTATTGCTGACAGGATGCCTCTTTTGTGGCCCTCTTTTCCTTATGTTCTGCTTCCTTAACACAGTTGCAATTGCTTATAGTGCAACTGCTGCCCTTCCTTTTGGCACAATTTGCGTGATAGTCCTAATATGGACGCTGGTAACTTCGCCATTACTTGTGTTAGGTGGAATTGCAGGTAAAAATAGCAAAACAGAGTTCCAAGCACCTGTCCGCACTACTAAATATCCCCGAGAAATTCCACCTCTTCCTTGGTACAGGAGCACCATTCCCCAGATGGCAATGGCAGGGTTTCTCCCATTCAGTGCCATCTACATAGAGCTGTACTACATTTTTGCTAGTGTCTGGGGCCACAGGATTTACACTATCTACAGCATACTCTTCATCGTCTTTATTATTCTGTTGATCGTCACTGCTTTCATCACTGTGGCTTTGACATACTTTCAACTTGCTGCAGAAGATCATGAATGGTGGTGGAGGTATGTAACTTATCTTATGGAAAATGCAGGCAATTCATACATTGTTTCTAGTCTGTGCATTTACCTCAATTGTGTTGACATGGGAGTGAGTTTTCTTCCTGAGATTGATATTGTTTGTGTTTCCATAGGTCTTTTCTTTGTGGTGGATCAACTGGCTTATTCATCTACGGCTACTGCTTGTATTATTACTACGCAAGATCAGATATGTCTGGTTTTATGCAAACTTCGTTCTTCTTTGGCTACATGGCCTGCATCTGCTATGGCTTCTTTCTCATGCTCGGTAGCGTAG

Protein sequence

>MsG0480022872.01.T01

MVLKNKSDRNVDRIERRKMVLTSRSDEVVVWQRDAGRRIQASVPEELVQLFRTRLFTGSVYIISRFRIVRNLGSYRVTNHGYRLVFSLETTAIVIVGTLSRMNDLYFVDSSMISRHQSDCDFLAGYTYVENVKGVSQIFVDPDIVQVADFMKRLTTCGIPVDGPIDSCNPEMREYGEADFLLFYPKKTIAELDSIIEDGKFVISACLTGFIDGGDCWTNSLSCEEVEEDESSLIGDHGNAAYEFHLIQRLMNVLVDICSIDSFREGKKEEKKMGRSVLWIHLLISLLAATHVRSDASDHRYSDGDAVPLYANKVGPFHNPSETYRYLDLPFCVTGHEKEKTEALGEVLNGDRLVSAPYELKFKKEKDSTVVCKKTLTREQVNQFREAVKKDYYFQMYYDDLPIWGFIGTVDKEGRADPSEYKYFLYKHIQFDVLYNKDRVIEISARMDPHSVVDLTEDREVDVEFMYTVKWKETDIPFEKRMEKYSQSSSLPHHLEIHWFSIINSCVTVLLLTGFLATILMRVLKNDFMKYAQDEEAADDQEETGWKYIHGDVFRFPKFKSIFAAALGSGTQLFTLTIFIFMLALVGVFYPYNRGALFTALVVIYALTSGIAGYTATSFYIQLEGTNWVRNLLLTGCLFCGPLFLMFCFLNTVAIAYSATAALPFGTICVIVLIWTLVTSPLLVLGGIAGKNSKTEFQAPVRTTKYPREIPPLPWYRSTIPQMAMAGFLPFSAIYIELYYIFASVWGHRIYTIYSILFIVFIILLIVTAFITVALTYFQLAAEDHEWWWRYVTYLMENAGNSYIVSSLCIYLNCVDMGVSFLPEIDIVCVSIGLFFVVDQLAYSSTATACIITTQDQICLVLCKLRSSLATWPASAMASFSCSVA*