AlfalfaGEDB | MsG0480023001.01

M. sativa cultivar ZhongmuNo.1 / MsG0480023001.01

KEGG: K08235
GO: GO:0004553 GO:0005618 GO:0005975 GO:0006073 GO:0010411 GO:0016762 GO:0042546 GO:0048046
PFAM: PF00722 PF06955

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480023001.01.T01	XP_013446617.1	99.293	283	2	0	1	283	1	283	0	590

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480023001.01.T01	P35694	87.589	282	33	2	1	281	1	281	0	508

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480023001.01.T01	A0A072TT00	99.293	283	2	0	1	283	1	283	0.0	590

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048253.01	MsG0480023001.01	0.808726	2.687771e-50	1.548319e-47
MsG0480022240.01	MsG0480023001.01	-0.808309	3.300095e-50	1.880555e-47
MsG0480023001.01	MsG0580024597.01	-0.823714	1.193407e-53	1.035789e-50
MsG0480023001.01	MsG0580024598.01	-0.812067	5.107247e-51	3.214832e-48
MsG0480023001.01	MsG0580024601.01	-0.816305	5.922646e-52	4.181721e-49
MsG0480023001.01	MsG0880045958.01	0.802279	6.049144e-49	2.951237e-46

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480023001.01.T01	MTR_8g081040	99.293	283	2	0	1	283	1	283	0.0	590
MsG0480023001.01.T01	MTR_3g084620	85.874	269	36	2	14	281	10	277	7.07e-175	484
MsG0480023001.01.T01	MTR_3g084630	85.874	269	36	2	14	281	10	277	8.16e-175	484
MsG0480023001.01.T01	MTR_8g102220	75.090	277	56	1	5	281	3	266	1.19e-158	442
MsG0480023001.01.T01	MTR_4g128410	70.956	272	74	1	15	281	9	280	8.67e-144	405
MsG0480023001.01.T01	MTR_7g093530	69.314	277	80	1	10	281	3	279	1.42e-141	400
MsG0480023001.01.T01	MTR_4g128570	68.459	279	77	3	6	282	4	273	6.39e-141	398
MsG0480023001.01.T01	MTR_4g128580	72.491	269	65	1	24	283	19	287	1.81e-140	397
MsG0480023001.01.T01	MTR_4g128400	63.287	286	97	2	1	281	1	283	2.89e-136	386
MsG0480023001.01.T01	MTR_2g038860	67.626	278	80	1	14	281	9	286	7.91e-136	385
MsG0480023001.01.T01	MTR_2g038705	67.626	278	80	1	14	281	9	286	7.91e-136	385
MsG0480023001.01.T01	MTR_4g126920	67.658	269	80	2	21	282	14	282	8.47e-132	375
MsG0480023001.01.T01	MTR_4g128590	64.261	291	75	3	6	283	3	277	1.36e-130	372
MsG0480023001.01.T01	MTR_5g091730	53.875	271	125	0	11	281	8	278	3.10e-106	310
MsG0480023001.01.T01	MTR_7g084760	53.405	279	118	4	14	281	10	287	2.06e-102	301
MsG0480023001.01.T01	MTR_8g102910	53.047	279	119	5	12	281	4	279	4.11e-102	300
MsG0480023001.01.T01	MTR_7g084770	56.031	257	106	3	31	281	32	287	2.19e-101	298
MsG0480023001.01.T01	MTR_6g033055	51.957	281	120	4	16	282	9	288	3.54e-101	298
MsG0480023001.01.T01	MTR_6g033085	51.943	283	121	4	14	282	7	288	6.32e-101	297
MsG0480023001.01.T01	MTR_7g084750	50.871	287	126	4	9	281	2	287	7.52e-101	297
MsG0480023001.01.T01	MTR_4g045853	48.057	283	129	5	15	283	12	290	6.84e-96	284
MsG0480023001.01.T01	MTR_3g089540	51.562	256	122	1	28	281	27	282	2.03e-94	280
MsG0480023001.01.T01	MTR_6g088320	49.104	279	131	3	12	281	7	283	2.85e-94	280
MsG0480023001.01.T01	MTR_4g097640	49.455	275	132	4	13	281	14	287	4.48e-93	277
MsG0480023001.01.T01	MTR_4g097670	49.455	275	132	4	13	281	14	287	4.48e-93	277
MsG0480023001.01.T01	MTR_2g089140	46.290	283	133	4	15	281	7	286	1.24e-92	276
MsG0480023001.01.T01	MTR_4g097700	50.579	259	121	4	29	281	67	324	3.39e-91	273
MsG0480023001.01.T01	MTR_1g105900	47.636	275	135	2	15	282	20	292	1.79e-90	270
MsG0480023001.01.T01	MTR_1g105495	45.486	288	141	7	10	282	9	295	9.48e-85	256
MsG0480023001.01.T01	MTR_2g089140	50.000	224	97	2	72	281	1	223	5.67e-83	249
MsG0480023001.01.T01	MTR_8g013055	44.358	257	135	3	31	281	31	285	6.46e-77	236
MsG0480023001.01.T01	MTR_7g056090	40.075	267	146	7	13	269	11	273	3.06e-62	198
MsG0480023001.01.T01	MTR_7g102260	40.684	263	140	6	30	282	36	292	4.11e-62	198
MsG0480023001.01.T01	MTR_1g063020	40.076	262	141	6	30	281	39	294	4.04e-60	193
MsG0480023001.01.T01	MTR_4g057450	40.840	262	139	6	30	281	49	304	5.65e-60	193
MsG0480023001.01.T01	MTR_2g095800	40.945	254	134	5	30	272	53	301	1.74e-58	189
MsG0480023001.01.T01	MTR_2g049130	40.964	249	126	8	31	267	29	268	3.46e-56	182
MsG0480023001.01.T01	MTR_2g049030	36.237	287	162	9	5	279	4	281	1.41e-53	176
MsG0480023001.01.T01	MTR_8g064180	35.165	273	139	8	35	281	50	310	5.62e-50	167
MsG0480023001.01.T01	MTR_5g029100	37.255	255	140	8	43	282	57	306	1.28e-47	162
MsG0480023001.01.T01	MTR_1g033420	36.015	261	155	5	31	281	33	291	5.30e-47	160
MsG0480023001.01.T01	MTR_5g029100	33.217	286	164	8	12	282	2	275	2.58e-44	153
MsG0480023001.01.T01	MTR_8g090100	33.818	275	164	7	20	281	12	281	1.36e-43	151
MsG0480023001.01.T01	MTR_8g479340	31.579	190	62	8	100	282	8	136	6.09e-16	73.6
MsG0480023001.01.T01	MTR_8g032640	31.977	172	109	5	53	222	33	198	1.54e-13	68.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480023001.01.T01	AT3G23730	74.101	278	62	3	14	281	9	286	2.91e-158	442
MsG0480023001.01.T01	AT4G14130	75.277	271	61	2	17	281	14	284	1.19e-156	438
MsG0480023001.01.T01	AT4G25810	65.091	275	89	1	14	281	9	283	5.29e-135	383
MsG0480023001.01.T01	AT5G57550	61.679	274	103	1	12	283	11	284	1.27e-130	372
MsG0480023001.01.T01	AT4G30270	63.004	273	91	2	10	282	4	266	2.07e-130	371
MsG0480023001.01.T01	AT5G57560	61.151	278	100	2	12	281	4	281	3.71e-128	366
MsG0480023001.01.T01	AT5G57540	63.602	261	88	2	28	282	23	282	1.15e-126	362
MsG0480023001.01.T01	AT5G57530	63.774	265	87	3	24	282	22	283	8.43e-126	360
MsG0480023001.01.T01	AT4G25820	63.910	266	89	2	22	281	21	285	3.87e-123	353
MsG0480023001.01.T01	AT5G48070	59.636	275	105	3	12	282	10	282	1.49e-121	349
MsG0480023001.01.T01	AT2G18800	58.007	281	100	3	20	282	17	297	2.18e-120	347
MsG0480023001.01.T01	AT4G30280	59.636	275	105	3	12	282	10	282	2.70e-112	325
MsG0480023001.01.T01	AT4G30290	59.273	275	106	3	12	282	5	277	1.63e-111	323
MsG0480023001.01.T01	AT1G65310	62.548	259	91	3	28	282	48	304	2.31e-110	322
MsG0480023001.01.T01	AT1G65310	62.548	259	91	3	28	282	26	282	2.96e-110	320
MsG0480023001.01.T01	AT5G13870	52.899	276	120	4	15	281	13	287	1.84e-98	291
MsG0480023001.01.T01	AT5G13870	52.899	276	120	4	15	281	13	287	1.84e-98	291
MsG0480023001.01.T01	AT5G13870	52.899	276	120	4	15	281	13	287	1.84e-98	291
MsG0480023001.01.T01	AT4G03210	50.000	280	129	5	12	283	10	286	1.16e-97	288
MsG0480023001.01.T01	AT2G06850	54.864	257	109	3	31	281	35	290	3.82e-97	288
MsG0480023001.01.T01	AT5G65730	47.826	276	136	5	12	281	17	290	6.28e-92	274
MsG0480023001.01.T01	AT4G37800	47.018	285	143	5	5	282	7	290	9.36e-91	271
MsG0480023001.01.T01	AT4G28850	47.687	281	135	2	12	282	10	288	2.07e-90	270
MsG0480023001.01.T01	AT4G03210	55.022	229	94	4	63	283	31	258	1.17e-89	267
MsG0480023001.01.T01	AT2G06850	55.895	229	94	3	61	283	5	232	1.24e-89	266
MsG0480023001.01.T01	AT2G14620	44.643	280	148	3	10	282	16	295	5.10e-86	259
MsG0480023001.01.T01	AT1G11545	45.270	296	145	7	1	282	8	300	1.50e-85	258
MsG0480023001.01.T01	AT2G14620	46.957	230	115	2	60	282	16	245	2.29e-77	236
MsG0480023001.01.T01	AT2G14620	47.945	219	107	2	71	282	16	234	3.70e-75	229
MsG0480023001.01.T01	AT4G13090	41.754	285	150	6	11	281	6	288	3.88e-73	226
MsG0480023001.01.T01	AT3G25050	41.538	260	140	4	30	281	34	289	7.45e-72	223
MsG0480023001.01.T01	AT4G13080	43.750	256	136	5	31	281	39	291	4.58e-70	218
MsG0480023001.01.T01	AT2G36870	40.840	262	139	6	30	281	42	297	8.26e-60	192
MsG0480023001.01.T01	AT3G44990	41.603	262	135	9	31	281	39	293	1.32e-56	184
MsG0480023001.01.T01	AT1G32170	35.235	298	168	9	3	281	2	293	1.09e-51	172
MsG0480023001.01.T01	AT1G10550	35.000	260	131	6	50	281	60	309	9.18e-51	169
MsG0480023001.01.T01	AT1G14720	36.641	262	153	6	31	281	31	290	4.95e-48	163
MsG0480023001.01.T01	AT2G01850	34.601	263	144	6	30	273	30	283	1.57e-46	159
MsG0480023001.01.T01	AT3G48580	33.725	255	146	8	37	281	32	273	4.41e-42	146
MsG0480023001.01.T01	AT4G18990	33.984	256	137	6	53	281	62	312	1.82e-40	144
MsG0480023001.01.T01	AT3G48580	32.889	225	135	7	60	281	3	214	8.25e-37	130
MsG0480023001.01.T01	AT4G18990	33.043	230	118	7	80	281	17	238	5.18e-33	122
MsG0480023001.01.T01	AT2G36870	41.727	139	71	3	30	160	42	178	4.92e-30	112
MsG0480023001.01.T01	AT3G48580	30.859	256	132	10	37	281	32	253	3.83e-27	106

Find 91 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TGCTATAATGGTTAGCTTTA+TGG	0.091663	4:+79579734	MsG0480023001.01.T01:CDS
ACATTCTTGAATACCCTTAT+TGG	0.161725	4:-79581392	None:intergenic
ATTCTCATTGGTTGGTTCTT+TGG	0.193461	4:-79581437	None:intergenic
TCAAAGAGAGAGTACCTATT+TGG	0.231310	4:+79579885	MsG0480023001.01.T01:CDS
GTCTGTTTCTCTGTCCAAAA+TGG	0.240325	4:+79579668	MsG0480023001.01.T01:exon
AGTGGAATTAGAAGCCATTT+TGG	0.245346	4:-79579682	None:intergenic
TGGTTGATAACATGCCAATA+AGG	0.266753	4:+79581378	MsG0480023001.01.T01:CDS
ACAGACAGAGAGAGAAGTTT+TGG	0.268335	4:-79579651	None:intergenic
ATATTTGTGTGAAGAATATA+AGG	0.297093	4:-79581157	None:intergenic
GTTTATGCTAATTGCTATAA+TGG	0.308914	4:+79579722	MsG0480023001.01.T01:CDS
TAGCCACTAGGCACTTTATA+AGG	0.315025	4:+79581736	MsG0480023001.01.T01:exon
CTCATCATGGGTTGGCCCTT+GGG	0.318423	4:-79581098	None:intergenic
TGGATTTAACTGCAGATTCT+TGG	0.319730	4:+79581358	MsG0480023001.01.T01:intron
ATAGTTGTTAATGTACATTA+AGG	0.323492	4:+79581887	MsG0480023001.01.T01:three_prime_UTR
TCCACACTTACTCCATCATT+TGG	0.354596	4:+79581245	MsG0480023001.01.T01:CDS
TTCAAGAATGTTGAATCTAT+TGG	0.357714	4:+79581404	MsG0480023001.01.T01:CDS
ATAAATGCGCTTGATGCTTA+TGG	0.368751	4:+79581620	MsG0480023001.01.T01:CDS
GAGAACAACAATTCTACCTT+TGG	0.383624	4:+79581203	MsG0480023001.01.T01:CDS
TCTCATCATGGGTTGGCCCT+TGG	0.389738	4:-79581099	None:intergenic
GCATATCAATTCTCCCAAAT+AGG	0.393235	4:-79579899	None:intergenic
TCAAGTTTATGTTGCTCTGT+TGG	0.395155	4:+79581939	MsG0480023001.01.T01:three_prime_UTR
CAAAGAGAGAGTACCTATTT+GGG	0.397766	4:+79579886	MsG0480023001.01.T01:CDS
GCCTGTGGAATGCTGATGAT+TGG	0.400428	4:+79581468	MsG0480023001.01.T01:CDS
ATTGGTTGGTTCTTTGGAAA+AGG	0.403105	4:-79581431	None:intergenic
GAGTGAATGTGTTAGAATAA+AGG	0.409541	4:-79579616	None:intergenic
ACTGAGTGGCCTTGAAATTA+CGG	0.411712	4:-79581550	None:intergenic
CTTGACAAAGTCTCTGGCTC+TGG	0.412130	4:+79579855	MsG0480023001.01.T01:CDS
AGTTGGATTAATCATTTCAA+TGG	0.414765	4:+79581791	MsG0480023001.01.T01:three_prime_UTR
TAGTTGTTAATGTACATTAA+GGG	0.422289	4:+79581888	MsG0480023001.01.T01:three_prime_UTR
GCCTAGTGGCTACACTCAAC+AGG	0.435642	4:-79581725	None:intergenic
CTTTCCCTTGACAAAGTCTC+TGG	0.439703	4:+79579849	MsG0480023001.01.T01:CDS
CTTGTTGCTGGCAACTCAGC+TGG	0.440806	4:+79579930	MsG0480023001.01.T01:CDS
ATGCAGCTTAAGCTTGTTGC+TGG	0.445241	4:+79579918	MsG0480023001.01.T01:CDS
AGTGACTTACATGATGTGTT+GGG	0.447640	4:-79581272	None:intergenic
GTATGCTGTAAAGGGTGCTT+TGG	0.447810	4:-79581525	None:intergenic
ATTACGGTAGTATGCTGTAA+AGG	0.449817	4:-79581534	None:intergenic
AGCATACTACCGTAATTTCA+AGG	0.452720	4:+79581541	MsG0480023001.01.T01:CDS
GGTTGATAACATGCCAATAA+GGG	0.455271	4:+79581379	MsG0480023001.01.T01:CDS
GTTCAAATTCTGATGCTGAA+TGG	0.458018	4:+79581594	MsG0480023001.01.T01:CDS
ACTCAAAATCAATCTCATCA+TGG	0.481396	4:-79581111	None:intergenic
AGGCTGGAATAGATTCTCAT+TGG	0.482882	4:-79581449	None:intergenic
TTTCACCAATCCACCTCTTG+TGG	0.492660	4:-79581492	None:intergenic
TGGAATAGATTCTCATTGGT+TGG	0.493361	4:-79581445	None:intergenic
TTTATGGTGGCTACTTGTGC+TGG	0.495035	4:+79579750	MsG0480023001.01.T01:CDS
ATCATCAGCATTCCACAGGC+TGG	0.499092	4:-79581465	None:intergenic
CTCAAAATCAATCTCATCAT+GGG	0.501697	4:-79581110	None:intergenic
CCTGTGGAATGCTGATGATT+GGG	0.507771	4:+79581469	MsG0480023001.01.T01:CDS
GTGGTACAGCTGTCATCCCA+AGG	0.509097	4:+79581082	MsG0480023001.01.T01:intron
TTACGGTAGTATGCTGTAAA+GGG	0.510381	4:-79581533	None:intergenic
AATATCTTTACTCAAGGTAA+AGG	0.513107	4:+79581175	MsG0480023001.01.T01:CDS
ATTTGAACTTAAAGAAGACT+TGG	0.523911	4:-79581579	None:intergenic
CACTCAACAGGAACACCTTG+TGG	0.524101	4:-79581713	None:intergenic
ACCAAGACTTTGATCTAACA+TGG	0.525267	4:+79579781	MsG0480023001.01.T01:CDS
GTTGGTTAATTAAGATTCTG+AGG	0.525718	4:+79581957	MsG0480023001.01.T01:three_prime_UTR
ACTCAACAGGAACACCTTGT+GGG	0.532653	4:-79581712	None:intergenic
AACCGTGCTAAGATATTCAA+TGG	0.538829	4:+79579810	MsG0480023001.01.T01:CDS
GTGTTGGGGCTTCCAAATGA+TGG	0.542384	4:-79581257	None:intergenic
ATGGTAGAAGAAGATTGAGA+TGG	0.542822	4:+79581639	MsG0480023001.01.T01:CDS
CCCAATCATCAGCATTCCAC+AGG	0.544118	4:-79581469	None:intergenic
TCCTGTTGAGTGTAGCCACT+AGG	0.556001	4:+79581724	MsG0480023001.01.T01:CDS
AGTTGTTAATGTACATTAAG+GGG	0.558771	4:+79581889	MsG0480023001.01.T01:three_prime_UTR
TAGTGACTTACATGATGTGT+TGG	0.562534	4:-79581273	None:intergenic
CCCATGTTAGATCAAAGTCT+TGG	0.564659	4:-79579782	None:intergenic
CACACAAATATCTTTACTCA+AGG	0.572059	4:+79581169	MsG0480023001.01.T01:CDS
TTCTAGTGGGGTCAAACCAA+AGG	0.574586	4:-79581219	None:intergenic
TATAATGGTTAGCTTTATGG+TGG	0.576994	4:+79579737	MsG0480023001.01.T01:CDS
AAATCAATCTCATCATGGGT+TGG	0.583038	4:-79581106	None:intergenic
TTGGGCCACAAGAGGTGGAT+TGG	0.585521	4:+79581487	MsG0480023001.01.T01:CDS
TGGTAGAAGAAGATTGAGAT+GGG	0.586469	4:+79581640	MsG0480023001.01.T01:CDS
GATGATTGGGCCACAAGAGG+TGG	0.588016	4:+79581482	MsG0480023001.01.T01:CDS
TAAGTGTGGAAGTTTCTAGT+GGG	0.590801	4:-79581232	None:intergenic
CAGAGCCAGAGACTTTGTCA+AGG	0.592607	4:-79579854	None:intergenic
TCCAAATGATGGAGTAAGTG+TGG	0.592696	4:-79581246	None:intergenic
GTGGATTGGTGAAAACTGAT+TGG	0.593499	4:+79581501	MsG0480023001.01.T01:CDS
CACATGAAACTCATTGTGAG+TGG	0.603766	4:-79579700	None:intergenic
CACCATTGAATATCTTAGCA+CGG	0.605044	4:-79579812	None:intergenic
CCAAGACTTTGATCTAACAT+GGG	0.605585	4:+79579782	MsG0480023001.01.T01:CDS
GAGTTCTTGGGAAACACAAG+TGG	0.615147	4:+79581130	MsG0480023001.01.T01:CDS
TGAGAATCTATTCCAGCCTG+TGG	0.616171	4:+79581453	MsG0480023001.01.T01:CDS
TATTTGTGTGAAGAATATAA+GGG	0.617384	4:-79581156	None:intergenic
AGAGCCAGAGACTTTGTCAA+GGG	0.627053	4:-79579853	None:intergenic
GTAAGTGTGGAAGTTTCTAG+TGG	0.637553	4:-79581233	None:intergenic
GTGACTTACATGATGTGTTG+GGG	0.642539	4:-79581271	None:intergenic
GCTGATGATTGGGCCACAAG+AGG	0.655452	4:+79581479	MsG0480023001.01.T01:CDS
TGGTACAGCTGTCATCCCAA+GGG	0.668640	4:+79581083	MsG0480023001.01.T01:intron
GATCTTAAGCGATTCCCACA+AGG	0.682204	4:+79581698	MsG0480023001.01.T01:CDS
CAAGACTTTGATCTAACATG+GGG	0.690513	4:+79579783	MsG0480023001.01.T01:CDS
CGTGCTAAGATATTCAATGG+TGG	0.692895	4:+79579813	MsG0480023001.01.T01:CDS
AAGTGTGGAAGTTTCTAGTG+GGG	0.697172	4:-79581231	None:intergenic
GAACCTTATAAAGTGCCTAG+TGG	0.721452	4:-79581739	None:intergenic
AGACTTGGTTGAGAACTGAG+TGG	0.735795	4:-79581564	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ATTAAAAATATCTTAGATAT+TGG	+	Chr4:79580734-79580753	MsG0480023001.01.T01:intron	10.0%
!!!	ATTAATTTATAAATTTGTTG+TGG	+	Chr4:79581063-79581082	MsG0480023001.01.T01:intron	10.0%
!!	AGATTTATAAAGTAAAAACA+AGG	-	Chr4:79580236-79580255	None:intergenic	15.0%
!!	ATCTAACTAAATTATTGATA+TGG	-	Chr4:79581045-79581064	None:intergenic	15.0%
!!	ATTTAATGACGAAAATATAA+TGG	+	Chr4:79580700-79580719	MsG0480023001.01.T01:intron	15.0%
!!	GATTTATAAAGTAAAAACAA+GGG	-	Chr4:79580235-79580254	None:intergenic	15.0%
!!!	AAAAATTTTACTTCTAAAGT+TGG	+	Chr4:79581774-79581793	MsG0480023001.01.T01:three_prime_UTR	15.0%
!!	ATAGTTGTTAATGTACATTA+AGG	+	Chr4:79581887-79581906	MsG0480023001.01.T01:three_prime_UTR	20.0%
!!	ATATTTGTGTGAAGAATATA+AGG	-	Chr4:79581160-79581179	None:intergenic	20.0%
!!	ATCTTGAAATTTAACCAATA+TGG	+	Chr4:79580910-79580929	MsG0480023001.01.T01:intron	20.0%
!!	TAGTTGTTAATGTACATTAA+GGG	+	Chr4:79581888-79581907	MsG0480023001.01.T01:three_prime_UTR	20.0%
!!	TATGTGTTAAAAATCCATAT+TGG	-	Chr4:79580783-79580802	None:intergenic	20.0%
!!	TATTTGTGTGAAGAATATAA+GGG	-	Chr4:79581159-79581178	None:intergenic	20.0%
!!	TGTATAAAAGTGATTATAGT+AGG	-	Chr4:79579988-79580007	None:intergenic	20.0%
!!	TTTATGTACATTAATCAACT+TGG	+	Chr4:79580569-79580588	MsG0480023001.01.T01:intron	20.0%
!!!	AATATAGTTAATGTTGACTT+TGG	+	Chr4:79580640-79580659	MsG0480023001.01.T01:intron	20.0%
!!!	CTTGGTCTTTTTTTTTAAAA+TGG	+	Chr4:79580587-79580606	MsG0480023001.01.T01:intron	20.0%
!	AATATCTTTACTCAAGGTAA+AGG	+	Chr4:79581175-79581194	MsG0480023001.01.T01:CDS	25.0%
!	AGTTGGATTAATCATTTCAA+TGG	+	Chr4:79581791-79581810	MsG0480023001.01.T01:three_prime_UTR	25.0%
!	AGTTGTTAATGTACATTAAG+GGG	+	Chr4:79581889-79581908	MsG0480023001.01.T01:three_prime_UTR	25.0%
!	ATACAACAAGGTTATAATGA+TGG	-	Chr4:79580050-79580069	None:intergenic	25.0%
!	ATTTGAACTTAAAGAAGACT+TGG	-	Chr4:79581582-79581601	None:intergenic	25.0%
!	CATTAGTTACTTAATGCTTA+AGG	-	Chr4:79581331-79581350	None:intergenic	25.0%
!	GTTTATGCTAATTGCTATAA+TGG	+	Chr4:79579722-79579741	MsG0480023001.01.T01:CDS	25.0%
!	TAAGTAACTAATGCATGAAT+TGG	+	Chr4:79581338-79581357	MsG0480023001.01.T01:intron	25.0%
!	TGAAGAATCAATACTAAAGT+TGG	-	Chr4:79580365-79580384	None:intergenic	25.0%
!	TTCAAGAATGTTGAATCTAT+TGG	+	Chr4:79581404-79581423	MsG0480023001.01.T01:CDS	25.0%
!!	AATGACGAAAATATAATGGA+TGG	+	Chr4:79580704-79580723	MsG0480023001.01.T01:intron	25.0%
!!	TAAGTTTCAAATGGATGTTT+TGG	-	Chr4:79580667-79580686	None:intergenic	25.0%
!!	TTATACACCATTTTCAATTC+TGG	+	Chr4:79580001-79580020	MsG0480023001.01.T01:intron	25.0%
!!!	ACTTTAGTATTGATTCTTCA+AGG	+	Chr4:79580365-79580384	MsG0480023001.01.T01:intron	25.0%
	AACTCAACTCTAATCCAATA+TGG	+	Chr4:79580766-79580785	MsG0480023001.01.T01:intron	30.0%
	ACATATGTATGATAGCAACA+TGG	-	Chr4:79580550-79580569	None:intergenic	30.0%
	ACATTCTTGAATACCCTTAT+TGG	-	Chr4:79581395-79581414	None:intergenic	30.0%
	ACTCAAAATCAATCTCATCA+TGG	-	Chr4:79581114-79581133	None:intergenic	30.0%
	AGCATGTATATGATACAACA+AGG	-	Chr4:79580062-79580081	None:intergenic	30.0%
	ATAAGCTCTTCAGAAATAGT+AGG	-	Chr4:79580170-79580189	None:intergenic	30.0%
	CACACAAATATCTTTACTCA+AGG	+	Chr4:79581169-79581188	MsG0480023001.01.T01:CDS	30.0%
	CTACAAGCTTAAGTTTCAAA+TGG	-	Chr4:79580676-79580695	None:intergenic	30.0%
	CTCAAAATCAATCTCATCAT+GGG	-	Chr4:79581113-79581132	None:intergenic	30.0%
	GAGTGAATGTGTTAGAATAA+AGG	-	Chr4:79579619-79579638	None:intergenic	30.0%
	GTGTAAAAGTAGGTCAATAA+TGG	-	Chr4:79580419-79580438	None:intergenic	30.0%
	GTTGGTTAATTAAGATTCTG+AGG	+	Chr4:79581957-79581976	MsG0480023001.01.T01:three_prime_UTR	30.0%
	GTTGTCTAATGTGTAAAAGT+AGG	-	Chr4:79580429-79580448	None:intergenic	30.0%
	TTGATATGGCAATACCAAAA+AGG	-	Chr4:79581031-79581050	None:intergenic	30.0%
!	AATTTTACTTTCTCGTGACA+GGG	+	Chr4:79580616-79580635	MsG0480023001.01.T01:intron	30.0%
!	TAATTTTACTTTCTCGTGAC+AGG	+	Chr4:79580615-79580634	MsG0480023001.01.T01:intron	30.0%
!!	AAGAGTACCAGAATTGAAAA+TGG	-	Chr4:79580011-79580030	None:intergenic	30.0%
!!	GGTTATAATGATGGATGAAA+TGG	-	Chr4:79580041-79580060	None:intergenic	30.0%
!!	TAGGTCAATAATGGTCTTAT+TGG	-	Chr4:79580410-79580429	None:intergenic	30.0%
!!	TATAATGGTTAGCTTTATGG+TGG	+	Chr4:79579737-79579756	MsG0480023001.01.T01:CDS	30.0%
!!	TGCACAGTTTAATTTGACAA+AGG	-	Chr4:79580454-79580473	None:intergenic	30.0%
!!	TGCTATAATGGTTAGCTTTA+TGG	+	Chr4:79579734-79579753	MsG0480023001.01.T01:CDS	30.0%
!!!	GAGATTGATTTTGAGTTCTT+GGG	+	Chr4:79581118-79581137	MsG0480023001.01.T01:CDS	30.0%
!!!	TGAGATTGATTTTGAGTTCT+TGG	+	Chr4:79581117-79581136	MsG0480023001.01.T01:CDS	30.0%
	AAACTCTATTAACGAGGTGT+TGG	-	Chr4:79580884-79580903	None:intergenic	35.0%
	AAATCAATCTCATCATGGGT+TGG	-	Chr4:79581109-79581128	None:intergenic	35.0%
	AACCGTGCTAAGATATTCAA+TGG	+	Chr4:79579810-79579829	MsG0480023001.01.T01:CDS	35.0%
	ACCAAGACTTTGATCTAACA+TGG	+	Chr4:79579781-79579800	MsG0480023001.01.T01:CDS	35.0%
	AGCATACTACCGTAATTTCA+AGG	+	Chr4:79581541-79581560	MsG0480023001.01.T01:CDS	35.0%
	AGTGACTTACATGATGTGTT+GGG	-	Chr4:79581275-79581294	None:intergenic	35.0%
	ATAAATGCGCTTGATGCTTA+TGG	+	Chr4:79581620-79581639	MsG0480023001.01.T01:CDS	35.0%
	ATGGCAATACCAAAAAGGAA+AGG	-	Chr4:79581026-79581045	None:intergenic	35.0%
	ATGGTAGAAGAAGATTGAGA+TGG	+	Chr4:79581639-79581658	MsG0480023001.01.T01:CDS	35.0%
	ATTACGGTAGTATGCTGTAA+AGG	-	Chr4:79581537-79581556	None:intergenic	35.0%
	CAAGACTTTGATCTAACATG+GGG	+	Chr4:79579783-79579802	MsG0480023001.01.T01:CDS	35.0%
	CACCATTGAATATCTTAGCA+CGG	-	Chr4:79579815-79579834	None:intergenic	35.0%
	CACTTTAGATGTTTCGTTCT+AGG	-	Chr4:79580819-79580838	None:intergenic	35.0%
	CCAAGACTTTGATCTAACAT+GGG	+	Chr4:79579782-79579801	MsG0480023001.01.T01:CDS	35.0%
	GAGAACAACAATTCTACCTT+TGG	+	Chr4:79581203-79581222	MsG0480023001.01.T01:CDS	35.0%
	GATGTCAAACTCTATTAACG+AGG	-	Chr4:79580890-79580909	None:intergenic	35.0%
	GCATATCAATTCTCCCAAAT+AGG	-	Chr4:79579902-79579921	None:intergenic	35.0%
	GTTCAAATTCTGATGCTGAA+TGG	+	Chr4:79581594-79581613	MsG0480023001.01.T01:CDS	35.0%
	TAGTGACTTACATGATGTGT+TGG	-	Chr4:79581276-79581295	None:intergenic	35.0%
	TCAAGTTTATGTTGCTCTGT+TGG	+	Chr4:79581939-79581958	MsG0480023001.01.T01:three_prime_UTR	35.0%
	TGATTGAGATGGTTTGATAG+TGG	+	Chr4:79580839-79580858	MsG0480023001.01.T01:intron	35.0%
	TGGAATAGATTCTCATTGGT+TGG	-	Chr4:79581448-79581467	None:intergenic	35.0%
	TGGATTTAACTGCAGATTCT+TGG	+	Chr4:79581358-79581377	MsG0480023001.01.T01:intron	35.0%
	TGGCAATACCAAAAAGGAAA+GGG	-	Chr4:79581025-79581044	None:intergenic	35.0%
	TGGTAGAAGAAGATTGAGAT+GGG	+	Chr4:79581640-79581659	MsG0480023001.01.T01:CDS	35.0%
	TTACGGTAGTATGCTGTAAA+GGG	-	Chr4:79581536-79581555	None:intergenic	35.0%
!	AAAGGAAAGGGACTTTTCTT+TGG	-	Chr4:79581013-79581032	None:intergenic	35.0%
!	AACTCTATTAACGAGGTGTT+GGG	-	Chr4:79580883-79580902	None:intergenic	35.0%
!	AAGGAAAGGGACTTTTCTTT+GGG	-	Chr4:79581012-79581031	None:intergenic	35.0%
!	AGAAAAGTCCCTTTCCTTTT+TGG	+	Chr4:79581014-79581033	MsG0480023001.01.T01:intron	35.0%
!	AGTGGAATTAGAAGCCATTT+TGG	-	Chr4:79579685-79579704	None:intergenic	35.0%
!	ATTCTCATTGGTTGGTTCTT+TGG	-	Chr4:79581440-79581459	None:intergenic	35.0%
!	ATTGGTTGGTTCTTTGGAAA+AGG	-	Chr4:79581434-79581453	None:intergenic	35.0%
!	ATTTTACTTTCTCGTGACAG+GGG	+	Chr4:79580617-79580636	MsG0480023001.01.T01:intron	35.0%
!	CATCTAAAGTGTGATTGAGA+TGG	+	Chr4:79580828-79580847	MsG0480023001.01.T01:intron	35.0%
!!	CAAAGAGAGAGTACCTATTT+GGG	+	Chr4:79579886-79579905	MsG0480023001.01.T01:CDS	35.0%
!!	GGTTGATAACATGCCAATAA+GGG	+	Chr4:79581379-79581398	MsG0480023001.01.T01:CDS	35.0%
!!	TAACCAATATGGTGTTGTGT+GGG	+	Chr4:79580921-79580940	MsG0480023001.01.T01:intron	35.0%
!!	TAAGTGTGGAAGTTTCTAGT+GGG	-	Chr4:79581235-79581254	None:intergenic	35.0%
!!	TCAAAGAGAGAGTACCTATT+TGG	+	Chr4:79579885-79579904	MsG0480023001.01.T01:CDS	35.0%
!!	TGGTTGATAACATGCCAATA+AGG	+	Chr4:79581378-79581397	MsG0480023001.01.T01:CDS	35.0%
!!	TTAACCAATATGGTGTTGTG+TGG	+	Chr4:79580920-79580939	MsG0480023001.01.T01:intron	35.0%
	AGGCTGGAATAGATTCTCAT+TGG	-	Chr4:79581452-79581471	None:intergenic	40.0%
	CACATGAAACTCATTGTGAG+TGG	-	Chr4:79579703-79579722	None:intergenic	40.0%
	CCCATGTTAGATCAAAGTCT+TGG	-	Chr4:79579785-79579804	None:intergenic	40.0%
	CGTGCTAAGATATTCAATGG+TGG	+	Chr4:79579813-79579832	MsG0480023001.01.T01:CDS	40.0%
	GTGACTTACATGATGTGTTG+GGG	-	Chr4:79581274-79581293	None:intergenic	40.0%
	TAGCCACTAGGCACTTTATA+AGG	+	Chr4:79581736-79581755	MsG0480023001.01.T01:exon	40.0%
	TCCACACTTACTCCATCATT+TGG	+	Chr4:79581245-79581264	MsG0480023001.01.T01:CDS	40.0%
!	ACAGACAGAGAGAGAAGTTT+TGG	-	Chr4:79579654-79579673	None:intergenic	40.0%
!	ACTGAGTGGCCTTGAAATTA+CGG	-	Chr4:79581553-79581572	None:intergenic	40.0%
!	GAACCTTATAAAGTGCCTAG+TGG	-	Chr4:79581742-79581761	None:intergenic	40.0%
!	GTAAGTGTGGAAGTTTCTAG+TGG	-	Chr4:79581236-79581255	None:intergenic	40.0%
!	GTCTGTTTCTCTGTCCAAAA+TGG	+	Chr4:79579668-79579687	MsG0480023001.01.T01:exon	40.0%
!	TCCAAATGATGGAGTAAGTG+TGG	-	Chr4:79581249-79581268	None:intergenic	40.0%
!!	AAGTGTGGAAGTTTCTAGTG+GGG	-	Chr4:79581234-79581253	None:intergenic	40.0%
!!	GTGGATTGGTGAAAACTGAT+TGG	+	Chr4:79581501-79581520	MsG0480023001.01.T01:CDS	40.0%
	ACTCAACAGGAACACCTTGT+GGG	-	Chr4:79581715-79581734	None:intergenic	45.0%
	AGAGCCAGAGACTTTGTCAA+GGG	-	Chr4:79579856-79579875	None:intergenic	45.0%
	AGTCCCACACAACACCATAT+TGG	-	Chr4:79580927-79580946	None:intergenic	45.0%
	CCTGTGGAATGCTGATGATT+GGG	+	Chr4:79581469-79581488	MsG0480023001.01.T01:CDS	45.0%
	CTTTCCCTTGACAAAGTCTC+TGG	+	Chr4:79579849-79579868	MsG0480023001.01.T01:CDS	45.0%
	GAGTTCTTGGGAAACACAAG+TGG	+	Chr4:79581130-79581149	MsG0480023001.01.T01:CDS	45.0%
	GATCTTAAGCGATTCCCACA+AGG	+	Chr4:79581698-79581717	MsG0480023001.01.T01:CDS	45.0%
	TGAGAATCTATTCCAGCCTG+TGG	+	Chr4:79581453-79581472	MsG0480023001.01.T01:CDS	45.0%
	TTCTAGTGGGGTCAAACCAA+AGG	-	Chr4:79581222-79581241	None:intergenic	45.0%
	TTTATGGTGGCTACTTGTGC+TGG	+	Chr4:79579750-79579769	MsG0480023001.01.T01:CDS	45.0%
	TTTCACCAATCCACCTCTTG+TGG	-	Chr4:79581495-79581514	None:intergenic	45.0%
!	AGACTTGGTTGAGAACTGAG+TGG	-	Chr4:79581567-79581586	None:intergenic	45.0%
!!	ATGCAGCTTAAGCTTGTTGC+TGG	+	Chr4:79579918-79579937	MsG0480023001.01.T01:CDS	45.0%
!!	GTATGCTGTAAAGGGTGCTT+TGG	-	Chr4:79581528-79581547	None:intergenic	45.0%
	ATCATCAGCATTCCACAGGC+TGG	-	Chr4:79581468-79581487	None:intergenic	50.0%
	CACTCAACAGGAACACCTTG+TGG	-	Chr4:79581716-79581735	None:intergenic	50.0%
	CAGAGCCAGAGACTTTGTCA+AGG	-	Chr4:79579857-79579876	None:intergenic	50.0%
	CCCAATCATCAGCATTCCAC+AGG	-	Chr4:79581472-79581491	None:intergenic	50.0%
	GCCTGTGGAATGCTGATGAT+TGG	+	Chr4:79581468-79581487	MsG0480023001.01.T01:CDS	50.0%
	GTGTTGGGGCTTCCAAATGA+TGG	-	Chr4:79581260-79581279	None:intergenic	50.0%
	TCCTGTTGAGTGTAGCCACT+AGG	+	Chr4:79581724-79581743	MsG0480023001.01.T01:CDS	50.0%
	TGGTACAGCTGTCATCCCAA+GGG	+	Chr4:79581083-79581102	MsG0480023001.01.T01:intron	50.0%
!	CTTGACAAAGTCTCTGGCTC+TGG	+	Chr4:79579855-79579874	MsG0480023001.01.T01:CDS	50.0%
	CTTGTTGCTGGCAACTCAGC+TGG	+	Chr4:79579930-79579949	MsG0480023001.01.T01:CDS	55.0%
	GATGATTGGGCCACAAGAGG+TGG	+	Chr4:79581482-79581501	MsG0480023001.01.T01:CDS	55.0%
	GCCTAGTGGCTACACTCAAC+AGG	-	Chr4:79581728-79581747	None:intergenic	55.0%
	GCTGATGATTGGGCCACAAG+AGG	+	Chr4:79581479-79581498	MsG0480023001.01.T01:CDS	55.0%
	GTGGTACAGCTGTCATCCCA+AGG	+	Chr4:79581082-79581101	MsG0480023001.01.T01:intron	55.0%
	TTGGGCCACAAGAGGTGGAT+TGG	+	Chr4:79581487-79581506	MsG0480023001.01.T01:CDS	55.0%
!	GGTGTTGTGTGGGACTCTCT+TGG	+	Chr4:79580931-79580950	MsG0480023001.01.T01:intron	55.0%
!!	CTCATCATGGGTTGGCCCTT+GGG	-	Chr4:79581101-79581120	None:intergenic	55.0%
!!	TCTCATCATGGGTTGGCCCT+TGG	-	Chr4:79581102-79581121	None:intergenic	55.0%

Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	79579596	79581987	79579596	ID=MsG0480023001.01;Name=MsG0480023001.01
Chr4	mRNA	79579596	79581987	79579596	ID=MsG0480023001.01.T01;Parent=MsG0480023001.01;Name=MsG0480023001.01.T01;_AED=0.27;_eAED=0.27;_QI=91\|1\|1\|1\|1\|1\|3\|242\|283
Chr4	exon	79579596	79579971	79579596	ID=MsG0480023001.01.T01:exon:3846;Parent=MsG0480023001.01.T01
Chr4	exon	79581091	79581284	79581091	ID=MsG0480023001.01.T01:exon:3847;Parent=MsG0480023001.01.T01
Chr4	exon	79581373	79581987	79581373	ID=MsG0480023001.01.T01:exon:3848;Parent=MsG0480023001.01.T01
Chr4	five_prime_UTR	79579596	79579686	79579596	ID=MsG0480023001.01.T01:five_prime_utr;Parent=MsG0480023001.01.T01
Chr4	CDS	79579687	79579971	79579687	ID=MsG0480023001.01.T01:cds;Parent=MsG0480023001.01.T01
Chr4	CDS	79581091	79581284	79581091	ID=MsG0480023001.01.T01:cds;Parent=MsG0480023001.01.T01
Chr4	CDS	79581373	79581745	79581373	ID=MsG0480023001.01.T01:cds;Parent=MsG0480023001.01.T01
Chr4	three_prime_UTR	79581746	79581987	79581746	ID=MsG0480023001.01.T01:three_prime_utr;Parent=MsG0480023001.01.T01

Gene Sequence

>MsG0480023001.01.T01

ATGGCTTCTAATTCCACTCACAATGAGTTTCATGTGTTTATGCTAATTGCTATAATGGTTAGCTTTATGGTGGCTACTTGTGCTGGTAGCTTCTACCAAGACTTTGATCTAACATGGGGTGACAACCGTGCTAAGATATTCAATGGTGGTCAGCTTCTATCACTTTCCCTTGACAAAGTCTCTGGCTCTGGCTTCAAATCAAAGAGAGAGTACCTATTTGGGAGAATTGATATGCAGCTTAAGCTTGTTGCTGGCAACTCAGCTGGCACTGTCACTGCTTACTACCTGTCATCCCAAGGGCCAACCCATGATGAGATTGATTTTGAGTTCTTGGGAAACACAAGTGGTGACCCTTATATTCTTCACACAAATATCTTTACTCAAGGTAAAGGTAATAGAGAACAACAATTCTACCTTTGGTTTGACCCCACTAGAAACTTCCACACTTACTCCATCATTTGGAAGCCCCAACACATCATATTCTTGGTTGATAACATGCCAATAAGGGTATTCAAGAATGTTGAATCTATTGGTGTTCCTTTTCCAAAGAACCAACCAATGAGAATCTATTCCAGCCTGTGGAATGCTGATGATTGGGCCACAAGAGGTGGATTGGTGAAAACTGATTGGTCCAAAGCACCCTTTACAGCATACTACCGTAATTTCAAGGCCACTCAGTTCTCAACCAAGTCTTCTTTAAGTTCAAATTCTGATGCTGAATGGCAAATAAATGCGCTTGATGCTTATGGTAGAAGAAGATTGAGATGGGTTCAAAAGTACTTCATGATTTATAACTATTGTAATGATCTTAAGCGATTCCCACAAGGTGTTCCTGTTGAGTGTAGCCACTAG

Protein sequence

>MsG0480023001.01.T01

MASNSTHNEFHVFMLIAIMVSFMVATCAGSFYQDFDLTWGDNRAKIFNGGQLLSLSLDKVSGSGFKSKREYLFGRIDMQLKLVAGNSAGTVTAYYLSSQGPTHDEIDFEFLGNTSGDPYILHTNIFTQGKGNREQQFYLWFDPTRNFHTYSIIWKPQHIIFLVDNMPIRVFKNVESIGVPFPKNQPMRIYSSLWNADDWATRGGLVKTDWSKAPFTAYYRNFKATQFSTKSSLSSNSDAEWQINALDAYGRRRLRWVQKYFMIYNYCNDLKRFPQGVPVECSH*