AlfalfaGEDB | MsG0480022240.01

M. sativa cultivar ZhongmuNo.1 / MsG0480022240.01

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022240.01.T01	XP_003607784.1	89.474	57	5	1	1	56	1	57	3.39E-17	78.6

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022240.01.T01	G7JHG4	89.474	57	5	1	1	56	1	57	1.62e-17	78.6

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048748.01	MsG0480022240.01	0.815292	9.963488e-52	6.841865e-49
MsG0080049069.01	MsG0480022240.01	0.818353	2.049204e-52	1.530414e-49
MsG0080049070.01	MsG0480022240.01	0.840350	9.170362e-58	1.302645e-54
MsG0180000017.01	MsG0480022240.01	0.807021	6.194339e-50	3.412953e-47
MsG0180000040.01	MsG0480022240.01	0.801746	7.783916e-49	3.746313e-46
MsG0180000246.01	MsG0480022240.01	0.812418	4.282698e-51	2.721703e-48
MsG0180000489.01	MsG0480022240.01	0.833909	4.067951e-56	4.751988e-53
MsG0180000549.01	MsG0480022240.01	0.829196	5.893334e-55	5.989548e-52
MsG0180000599.01	MsG0480022240.01	0.800017	1.755777e-48	8.088290e-46
MsG0180000843.01	MsG0480022240.01	0.832546	8.887370e-56	9.965821e-53
MsG0180000942.01	MsG0480022240.01	0.836100	1.140442e-56	1.422722e-53
MsG0180000976.01	MsG0480022240.01	0.800048	1.729987e-48	7.975896e-46
MsG0180001270.01	MsG0480022240.01	0.801217	9.991837e-49	4.745223e-46
MsG0180001548.01	MsG0480022240.01	0.879648	1.049848e-69	5.737126e-66
MsG0180002523.01	MsG0480022240.01	0.814995	1.159693e-51	7.899485e-49
MsG0180002700.01	MsG0480022240.01	0.866941	1.972655e-65	6.768033e-62
MsG0180003196.01	MsG0480022240.01	0.874773	5.195761e-68	2.368091e-64
MsG0180003514.01	MsG0480022240.01	0.804806	1.809860e-49	9.421391e-47
MsG0180004792.01	MsG0480022240.01	0.862415	5.152454e-64	1.507811e-60
MsG0180005130.01	MsG0480022240.01	-0.805157	1.528827e-49	8.030138e-47
MsG0180005143.01	MsG0480022240.01	-0.801785	7.642564e-49	3.681963e-46
MsG0180005184.01	MsG0480022240.01	0.837368	5.416719e-57	7.020660e-54
MsG0180005339.01	MsG0480022240.01	0.858829	6.294414e-63	1.627956e-59
MsG0180005391.01	MsG0480022240.01	0.851813	6.951625e-61	1.423924e-57
MsG0180005418.01	MsG0480022240.01	0.805687	1.183638e-49	6.302538e-47
MsG0180005898.01	MsG0480022240.01	0.806293	8.826366e-50	4.773016e-47
MsG0180006028.01	MsG0480022240.01	0.809328	1.997391e-50	1.169333e-47
MsG0180006217.01	MsG0480022240.01	0.829771	4.271003e-55	4.414594e-52
MsG0180006253.01	MsG0480022240.01	-0.842321	2.776682e-58	4.194829e-55
MsG0280006319.01	MsG0480022240.01	0.818591	1.809304e-52	1.360019e-49
MsG0280010564.01	MsG0480022240.01	0.814462	1.521525e-51	1.021632e-48
MsG0280010728.01	MsG0480022240.01	0.819980	8.733533e-53	6.823467e-50
MsG0280011073.01	MsG0480022240.01	0.834031	3.792138e-56	4.445509e-53
MsG0280011110.01	MsG0480022240.01	-0.807005	6.244060e-50	3.438879e-47
MsG0280011180.01	MsG0480022240.01	0.845654	3.549131e-59	5.956552e-56
MsG0280011218.01	MsG0480022240.01	0.854759	9.939070e-62	2.243371e-58
MsG0280011362.01	MsG0480022240.01	0.818737	1.677146e-52	1.265779e-49
MsG0380012868.01	MsG0480022240.01	0.882761	7.942107e-71	4.900002e-67
MsG0380014179.01	MsG0480022240.01	0.825153	5.475946e-54	4.951266e-51
MsG0480019812.01	MsG0480022240.01	0.868962	4.421232e-66	1.630108e-62
MsG0480020473.01	MsG0480022240.01	0.876923	9.485041e-69	4.681967e-65
MsG0480020596.01	MsG0480022240.01	0.842052	3.271998e-58	4.900918e-55
MsG0480020797.01	MsG0480022240.01	-0.843866	1.076297e-58	1.706856e-55
MsG0480021091.01	MsG0480022240.01	-0.810117	1.352097e-50	8.082008e-48
MsG0480021101.01	MsG0480022240.01	0.806235	9.079588e-50	4.902911e-47
MsG0480021213.01	MsG0480022240.01	0.824371	8.368835e-54	7.398287e-51
MsG0480021377.01	MsG0480022240.01	0.847151	1.385929e-59	2.441046e-56
MsG0480021817.01	MsG0480022240.01	0.812564	3.979360e-51	2.538566e-48
MsG0480022154.01	MsG0480022240.01	0.830406	2.989758e-55	3.147017e-52
MsG0480022155.01	MsG0480022240.01	0.836710	7.976860e-57	1.013520e-53
MsG0480022162.01	MsG0480022240.01	0.862273	5.696285e-64	1.658525e-60
MsG0480022226.01	MsG0480022240.01	0.866208	3.372362e-65	1.127334e-61
MsG0480022239.01	MsG0480022240.01	0.913223	7.896079e-84	1.847966e-79
MsG0480022240.01	MsG0480022243.01	0.828745	7.580252e-55	7.601222e-52
MsG0480022240.01	MsG0480022245.01	0.817742	2.816045e-52	2.068032e-49
MsG0480022240.01	MsG0480022918.01	0.819127	1.367030e-52	1.042915e-49
MsG0480022240.01	MsG0480023001.01	-0.808309	3.300095e-50	1.880555e-47
MsG0480022240.01	MsG0480023169.01	0.815490	8.999421e-52	6.213973e-49
MsG0480022240.01	MsG0480023406.01	0.862779	3.978566e-64	1.179255e-60
MsG0480022240.01	MsG0480023466.01	0.839579	1.455916e-57	2.019246e-54
MsG0480022240.01	MsG0580024471.01	0.860976	1.418673e-63	3.950263e-60
MsG0480022240.01	MsG0580024535.01	-0.829043	6.417436e-55	6.491713e-52
MsG0480022240.01	MsG0580024597.01	0.872010	4.416336e-67	1.818337e-63
MsG0480022240.01	MsG0580024598.01	0.903147	4.682801e-79	6.842109e-75
MsG0480022240.01	MsG0580024601.01	0.891489	3.791129e-74	3.331025e-70
MsG0480022240.01	MsG0580024764.01	0.803389	3.569162e-49	1.791267e-46
MsG0480022240.01	MsG0580024872.01	0.818903	1.537178e-52	1.165606e-49
MsG0480022240.01	MsG0580025252.01	0.805599	1.234925e-49	6.560374e-47
MsG0480022240.01	MsG0580025558.01	-0.822493	2.299608e-53	1.927823e-50
MsG0480022240.01	MsG0580025670.01	-0.809508	1.827913e-50	1.075209e-47
MsG0480022240.01	MsG0580027183.01	0.831248	1.859263e-55	2.006062e-52
MsG0480022240.01	MsG0580027803.01	0.810303	1.232906e-50	7.404942e-48
MsG0480022240.01	MsG0580027899.01	0.842497	2.493635e-58	3.788004e-55
MsG0480022240.01	MsG0580028024.01	0.815568	8.647095e-52	5.983191e-49
MsG0480022240.01	MsG0580028306.01	0.804982	1.662846e-49	8.695086e-47
MsG0480022240.01	MsG0580028419.01	0.804572	2.025524e-49	1.047974e-46
MsG0480022240.01	MsG0580028495.01	0.836728	7.892342e-57	1.003332e-53
MsG0480022240.01	MsG0580029682.01	0.821003	5.087349e-53	4.089540e-50
MsG0480022240.01	MsG0580029700.01	0.801087	1.062438e-48	5.029407e-46
MsG0480022240.01	MsG0580029912.01	0.831485	1.625796e-55	1.766750e-52
MsG0480022240.01	MsG0580029914.01	0.827705	1.349615e-54	1.313044e-51
MsG0480022240.01	MsG0580030063.01	0.816865	4.437276e-52	3.181146e-49
MsG0480022240.01	MsG0680030464.01	0.809091	2.245360e-50	1.306182e-47
MsG0480022240.01	MsG0680030680.01	0.817513	3.171937e-52	2.314799e-49
MsG0480022240.01	MsG0680032413.01	0.827608	1.424087e-54	1.381491e-51
MsG0480022240.01	MsG0680032516.01	0.807032	6.160858e-50	3.395504e-47
MsG0480022240.01	MsG0680032850.01	0.850651	1.479434e-60	2.918300e-57
MsG0480022240.01	MsG0680033852.01	0.836998	6.736847e-57	8.634385e-54
MsG0480022240.01	MsG0680034725.01	0.805441	1.333067e-49	7.053111e-47
MsG0480022240.01	MsG0680035618.01	0.811344	7.339590e-51	4.531687e-48
MsG0480022240.01	MsG0680035664.01	0.837777	4.254567e-57	5.585314e-54
MsG0480022240.01	MsG0680035665.01	0.846223	2.485578e-59	4.248126e-56
MsG0480022240.01	MsG0780035960.01	0.808947	2.410565e-50	1.396827e-47
MsG0480022240.01	MsG0780035965.01	0.817030	4.074535e-52	2.934377e-49
MsG0480022240.01	MsG0780036008.01	0.854946	8.773076e-62	1.992450e-58
MsG0480022240.01	MsG0780036260.01	-0.801661	8.102605e-49	3.891287e-46
MsG0480022240.01	MsG0780037052.01	-0.862329	5.475143e-64	1.597278e-60
MsG0480022240.01	MsG0780037363.01	0.839098	1.941798e-57	2.653720e-54
MsG0480022240.01	MsG0780037662.01	0.839958	1.160158e-57	1.628272e-54
MsG0480022240.01	MsG0780039161.01	0.824378	8.336113e-54	7.371009e-51
MsG0480022240.01	MsG0780039686.01	-0.822741	2.013749e-53	1.700218e-50
MsG0480022240.01	MsG0780039805.01	0.815450	9.190111e-52	6.338303e-49
MsG0480022240.01	MsG0780040278.01	0.804046	2.606597e-49	1.330532e-46
MsG0480022240.01	MsG0780040343.01	0.818636	1.767940e-52	1.330548e-49
MsG0480022240.01	MsG0780040684.01	0.852698	3.892507e-61	8.202017e-58
MsG0480022240.01	MsG0780040700.01	0.800077	1.707197e-48	7.876605e-46
MsG0480022240.01	MsG0780040825.01	-0.804288	2.321017e-49	1.192124e-46
MsG0480022240.01	MsG0780041004.01	0.818189	2.232100e-52	1.659367e-49
MsG0480022240.01	MsG0780041331.01	0.837097	6.355837e-57	8.169726e-54
MsG0480022240.01	MsG0780041385.01	0.840015	1.121279e-57	1.576592e-54
MsG0480022240.01	MsG0880041847.01	0.800727	1.258155e-48	5.901377e-46
MsG0480022240.01	MsG0880042086.01	0.872324	3.470576e-67	1.445972e-63
MsG0480022240.01	MsG0880042256.01	0.813707	2.233536e-51	1.469299e-48
MsG0480022240.01	MsG0880042415.01	0.881047	3.321089e-70	1.916090e-66
MsG0480022240.01	MsG0880042416.01	0.826968	2.027533e-54	1.930762e-51
MsG0480022240.01	MsG0880042417.01	0.808981	2.371221e-50	1.375278e-47
MsG0480022240.01	MsG0880043107.01	0.879905	8.503152e-70	4.694165e-66
MsG0480022240.01	MsG0880043621.01	0.822509	2.280496e-53	1.912703e-50
MsG0480022240.01	MsG0880043648.01	0.806359	8.549448e-50	4.630903e-47
MsG0480022240.01	MsG0880043650.01	0.807989	3.859971e-50	2.181099e-47
MsG0480022240.01	MsG0880043829.01	0.856759	2.588690e-62	6.243237e-59
MsG0480022240.01	MsG0880044105.01	0.820598	6.301360e-53	5.007736e-50
MsG0480022240.01	MsG0880044524.01	0.821440	4.032726e-53	3.280992e-50
MsG0480022240.01	MsG0880044564.01	0.820637	6.172697e-53	4.910785e-50
MsG0480022240.01	MsG0880044834.01	0.825754	3.945703e-54	3.629001e-51
MsG0480022240.01	MsG0880044901.01	-0.805509	1.289936e-49	6.836608e-47
MsG0480022240.01	MsG0880045031.01	0.813932	1.992618e-51	1.318757e-48
MsG0480022240.01	MsG0880045190.01	0.811199	7.887614e-51	4.851851e-48
MsG0480022240.01	MsG0880046124.01	0.834534	2.835006e-56	3.374316e-53
MsG0480022240.01	MsG0880046324.01	0.843286	1.538396e-58	2.395609e-55
MsG0480022240.01	MsG0880046334.01	-0.809561	1.780617e-50	1.048891e-47
MsG0480022240.01	MsG0880046408.01	0.843004	1.828882e-58	2.822158e-55
MsG0480022240.01	MsG0880046434.01	-0.839780	1.290932e-57	1.801535e-54
MsG0480022240.01	MsG0880047275.01	0.834216	3.406630e-56	4.015662e-53
MsG0480022240.01	MsG0880047312.01	-0.854538	1.151464e-61	2.580185e-58
MsG0480022240.01	MsG0880047451.01	0.808868	2.506685e-50	1.449480e-47
MsG0480022240.01	MsG0880047656.01	0.815815	7.620877e-52	5.308743e-49
MsG0380015438.01	MsG0480022240.01	0.827536	1.482001e-54	1.434724e-51
MsG0380015847.01	MsG0480022240.01	-0.806217	9.156640e-50	4.942268e-47
MsG0380016057.01	MsG0480022240.01	0.823632	1.247428e-53	1.080048e-50
MsG0380016194.01	MsG0480022240.01	0.812067	5.107245e-51	3.214832e-48
MsG0380017427.01	MsG0480022240.01	0.835181	1.948157e-56	2.363994e-53
MsG0380017620.01	MsG0480022240.01	0.832343	9.979994e-56	1.112234e-52
MsG0480018337.01	MsG0480022240.01	0.853267	2.675284e-61	5.747750e-58
MsG0480018338.01	MsG0480022240.01	0.807555	4.773579e-50	2.666864e-47
MsG0480018345.01	MsG0480022240.01	0.819540	1.101033e-52	8.497055e-50
MsG0480018426.01	MsG0480022240.01	0.800489	1.407316e-48	6.561243e-46
MsG0280007513.01	MsG0480022240.01	-0.829544	4.849825e-55	4.978827e-52
MsG0280007867.01	MsG0480022240.01	0.813857	2.070386e-51	1.367450e-48
MsG0280008072.01	MsG0480022240.01	0.806016	1.009186e-49	5.419189e-47
MsG0280008098.01	MsG0480022240.01	0.851215	1.026196e-60	2.062158e-57
MsG0280008343.01	MsG0480022240.01	0.806306	8.771725e-50	4.745019e-47
MsG0280008419.01	MsG0480022240.01	0.814727	1.329454e-51	8.990523e-49
MsG0280008928.01	MsG0480022240.01	0.825691	4.084089e-54	3.749552e-51
MsG0280008929.01	MsG0480022240.01	0.811237	7.739835e-51	4.765640e-48
MsG0280009435.01	MsG0480022240.01	0.819807	9.565933e-53	7.437948e-50
MsG0280009436.01	MsG0480022240.01	0.817685	2.901451e-52	2.127326e-49
MsG0280009445.01	MsG0480022240.01	0.810652	1.036495e-50	6.283620e-48
MsG0280009699.01	MsG0480022240.01	0.821442	4.028027e-53	3.277421e-50
MsG0280009756.01	MsG0480022240.01	0.802597	5.202303e-49	2.558700e-46

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022240.01.T01	MTR_4g082900	89.474	57	5	1	1	56	1	57	4.10e-21	78.6
MsG0480022240.01.T01	MTR_4g082883	68.519	54	14	2	8	58	26	79	1.17e-14	62.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 15 sgRNAs with CRISPR-Local

Find 19 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GGCTGGACCTAACGATATTT+TGG	0.245207	4:-70038499	MsG0480022240.01.T01:CDS
AAAACCAAAGGTGCGGTTAA+TGG	0.283737	4:-70038317	None:intergenic
AGCACCATTAACCGCACCTT+TGG	0.426753	4:+70038313	None:intergenic
GCACTTGCCAAAATATCGTT+AGG	0.455143	4:+70038492	None:intergenic
TAAAACCAAACCAGATCCTA+TGG	0.485210	4:-70038341	MsG0480022240.01.T01:CDS
TAAACAACAAAATCGATGGC+TGG	0.548436	4:-70038516	None:intergenic
GCAGGTGTTCATAAGACTGT+AGG	0.564597	4:-70038393	MsG0480022240.01.T01:CDS
ACTGTAGGAAATGCTGCAGC+TGG	0.565617	4:-70038441	MsG0480022240.01.T01:CDS
GCTTCAGCACAGAAAACTGT+AGG	0.594928	4:-70038456	MsG0480022240.01.T01:CDS
AAAACTGTGGGAAATGCTGC+AGG	0.601750	4:-70038411	MsG0480022240.01.T01:CDS
AGATCCTATGGCAAAACCAA+AGG	0.621329	4:-70038329	MsG0480022240.01.T01:CDS
AGCTGGTGCCCAGAAAACTG+TGG	0.654418	4:-70038424	MsG0480022240.01.T01:CDS
TGTAGGAGACTATGCTACCA+TGG	0.655972	4:-70038376	MsG0480022240.01.T01:CDS
CTATGGCAAAACCAAAGGTG+CGG	0.678266	4:-70038324	MsG0480022240.01.T01:CDS
GCTGGTGCCCAGAAAACTGT+GGG	0.683027	4:-70038423	MsG0480022240.01.T01:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	TAAAACCAAACCAGATCCTA+TGG	-	Chr4:70038480-70038499	MsG0480022240.01.T01:CDS	35.0%
!	TTTTACATAATCAGCAGCCA+TGG	+	Chr4:70038465-70038484	None:intergenic	35.0%
	AGATCCTATGGCAAAACCAA+AGG	-	Chr4:70038492-70038511	MsG0480022240.01.T01:CDS	40.0%
	GCACTTGCCAAAATATCGTT+AGG	+	Chr4:70038332-70038351	None:intergenic	40.0%
!	AGCATTTCCCACAGTTTTCT+GGG	+	Chr4:70038408-70038427	None:intergenic	40.0%
!	TTTTGCCATAGGATCTGGTT+TGG	+	Chr4:70038488-70038507	None:intergenic	40.0%
!!!	CGATATTTTGGCAAGTGCAA+AGG	-	Chr4:70038334-70038353	MsG0480022240.01.T01:CDS	40.0%
!!!	TTTGGTTTTGCCATAGGATC+TGG	+	Chr4:70038493-70038512	None:intergenic	40.0%
	AAAACTGTGGGAAATGCTGC+AGG	-	Chr4:70038410-70038429	MsG0480022240.01.T01:CDS	45.0%
	CTATGGCAAAACCAAAGGTG+CGG	-	Chr4:70038497-70038516	MsG0480022240.01.T01:CDS	45.0%
	GCAGGTGTTCATAAGACTGT+AGG	-	Chr4:70038428-70038447	MsG0480022240.01.T01:CDS	45.0%
	GCTTCAGCACAGAAAACTGT+AGG	-	Chr4:70038365-70038384	MsG0480022240.01.T01:CDS	45.0%
	TGTAGGAGACTATGCTACCA+TGG	-	Chr4:70038445-70038464	MsG0480022240.01.T01:CDS	45.0%
!	CAGCATTTCCCACAGTTTTC+TGG	+	Chr4:70038409-70038428	None:intergenic	45.0%
!	GGCTGGACCTAACGATATTT+TGG	-	Chr4:70038322-70038341	MsG0480022240.01.T01:CDS	45.0%
	ACTGTAGGAAATGCTGCAGC+TGG	-	Chr4:70038380-70038399	MsG0480022240.01.T01:CDS	50.0%
!!!	CGCACCTTTGGTTTTGCCAT+AGG	+	Chr4:70038499-70038518	None:intergenic	50.0%
	AGCTGGTGCCCAGAAAACTG+TGG	-	Chr4:70038397-70038416	MsG0480022240.01.T01:CDS	55.0%
	GCTGGTGCCCAGAAAACTGT+GGG	-	Chr4:70038398-70038417	MsG0480022240.01.T01:CDS	55.0%

Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	70038320	70038523	70038320	ID=MsG0480022240.01;Name=MsG0480022240.01
Chr4	mRNA	70038320	70038523	70038320	ID=MsG0480022240.01.T01;Parent=MsG0480022240.01;Name=MsG0480022240.01.T01;_AED=0.50;_eAED=0.50;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|67
Chr4	exon	70038320	70038523	70038320	ID=MsG0480022240.01.T01:exon:11098;Parent=MsG0480022240.01.T01
Chr4	CDS	70038320	70038523	70038320	ID=MsG0480022240.01.T01:cds;Parent=MsG0480022240.01.T01

Gene Sequence	>MsG0480022240.01.T01 ATGGCTGGACCTAACGATATTTTGGCAAGTGCAAAGGATGCAGCAGCTTCAGCACAGAAAACTGTAGGAAATGCTGCAGCTGGTGCCCAGAAAACTGTGGGAAATGCTGCAGGTGTTCATAAGACTGTAGGAGACTATGCTACCATGGCTGCTGATTATGTAAAACCAAACCAGATCCTATGGCAAAACCAAAGGTGCGGTTAA
Protein sequence	>MsG0480022240.01.T01 MAGPNDILASAKDAAASAQKTVGNAAAGAQKTVGNAAGVHKTVGDYATMAADYVKPNQILWQNQRCG*