Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880045958.01.T02 | XP_003608455.2 | 81.731 | 208 | 18 | 5 | 1 | 189 | 1 | 207 | 3.36E-88 | 269 |
| MsG0880045958.01.T01 | XP_003608455.2 | 88.462 | 208 | 18 | 3 | 1 | 203 | 1 | 207 | 4.51E-71 | 225 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880045958.01.T01 | Q9FPR2 | 58.333 | 72 | 22 | 3 | 1 | 64 | 1 | 72 | 8.66E-12 | 65.1 |
| MsG0880045958.01.T02 | Q9FPR2 | 58.333 | 72 | 22 | 3 | 1 | 64 | 1 | 72 | 2.25E-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880045958.01.T01 | G7JCS7 | 88.462 | 208 | 18 | 3 | 1 | 203 | 1 | 207 | 2.16e-71 | 225 |
| MsG0880045958.01.T02 | G7JCS7 | 81.731 | 208 | 18 | 5 | 1 | 189 | 1 | 207 | 1.60e-88 | 269 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048253.01 | MsG0880045958.01 | 0.914755 | 1.320615e-84 | 3.336147e-80 |
| MsG0080048717.01 | MsG0880045958.01 | 0.899580 | 1.722196e-77 | 2.142981e-73 |
| MsG0180000011.01 | MsG0880045958.01 | 0.871581 | 6.129561e-67 | 2.485591e-63 |
| MsG0180001548.01 | MsG0880045958.01 | -0.813714 | 2.225914e-51 | 1.464588e-48 |
| MsG0880045943.01 | MsG0880045958.01 | 0.986846 | 3.577057e-168 | 1.724668e-161 |
| MsG0180005199.01 | MsG0880045958.01 | 0.829802 | 4.198157e-55 | 4.343308e-52 |
| MsG0180005339.01 | MsG0880045958.01 | -0.802502 | 5.442817e-49 | 2.670435e-46 |
| MsG0780041353.01 | MsG0880045958.01 | 0.834817 | 2.406526e-56 | 2.888320e-53 |
| MsG0280010793.01 | MsG0880045958.01 | 0.835408 | 1.707680e-56 | 2.086405e-53 |
| MsG0480020797.01 | MsG0880045958.01 | 0.812833 | 3.474002e-51 | 2.231764e-48 |
| MsG0480023001.01 | MsG0880045958.01 | 0.802279 | 6.049144e-49 | 2.951237e-46 |
| MsG0580024872.01 | MsG0880045958.01 | -0.852686 | 3.921657e-61 | 8.260496e-58 |
| MsG0580025670.01 | MsG0880045958.01 | 0.861466 | 1.005916e-63 | 2.849147e-60 |
| MsG0380016516.01 | MsG0880045958.01 | -0.815917 | 7.232185e-52 | 5.051825e-49 |
| MsG0380017708.01 | MsG0880045958.01 | 0.836335 | 9.940587e-57 | 1.248983e-53 |
| MsG0380017793.01 | MsG0880045958.01 | -0.811100 | 8.287338e-51 | 5.084458e-48 |
| MsG0580029237.01 | MsG0880045958.01 | -0.807181 | 5.730280e-50 | 3.170416e-47 |
| MsG0680030630.01 | MsG0880045958.01 | 0.842970 | 1.867922e-58 | 2.879413e-55 |
| MsG0280007598.01 | MsG0880045958.01 | 0.804326 | 2.279713e-49 | 1.172027e-46 |
| MsG0280007923.01 | MsG0880045958.01 | 0.849956 | 2.317806e-60 | 4.469219e-57 |
| MsG0680035665.01 | MsG0880045958.01 | -0.816434 | 5.540972e-52 | 3.925618e-49 |
| MsG0780037052.01 | MsG0880045958.01 | 0.857179 | 1.946995e-62 | 4.763744e-59 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880045958.01.T02 | MTR_4g095280 | 81.731 | 208 | 18 | 5 | 1 | 189 | 1 | 207 | 4.07e-92 | 269 |
| MsG0880045958.01.T01 | MTR_4g095280 | 88.462 | 208 | 18 | 3 | 1 | 203 | 1 | 207 | 5.47e-75 | 225 |
| MsG0880045958.01.T01 | MTR_5g016250 | 49.393 | 247 | 58 | 10 | 1 | 203 | 1 | 224 | 8.81e-20 | 84.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880045958.01.T02 | AT4G37450 | 58.333 | 72 | 22 | 3 | 1 | 64 | 1 | 72 | 2.30e-12 | 64.3 |
| MsG0880045958.01.T02 | AT4G37450 | 52.439 | 82 | 35 | 2 | 1 | 78 | 70 | 151 | 2.40e-12 | 65.1 |
| MsG0880045958.01.T01 | AT4G37450 | 58.333 | 72 | 22 | 3 | 1 | 64 | 1 | 72 | 8.83e-13 | 65.1 |
| MsG0880045958.01.T01 | AT4G37450 | 58.333 | 72 | 22 | 3 | 1 | 64 | 70 | 141 | 1.80e-12 | 65.1 |
Find 100 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAACTTTCAACTTTCAATA+TGG | 0.214473 | 8:-66944507 | MsG0880045958.01.T01:exon |
| CCCTTGCTTGGTGCTGGAGC+TGG | 0.249954 | 8:+66944113 | None:intergenic |
| TTCTTTCCCTTGCTTGGTGC+TGG | 0.263309 | 8:+66944107 | None:intergenic |
| GGTGTTGTTGGTGTGGTTGT+AGG | 0.304465 | 8:+66944344 | None:intergenic |
| GGTGCTCCTGCTGGTGGTGC+TGG | 0.331916 | 8:+66944035 | None:intergenic |
| AGCAGCTGGAGGAGATGATT+TGG | 0.353606 | 8:+66944304 | None:intergenic |
| TTGTTCTTCTTTCCCTTGCT+TGG | 0.362413 | 8:+66944101 | None:intergenic |
| GGAGGTTTGGTTGCCGGAGC+AGG | 0.362636 | 8:+66944278 | None:intergenic |
| GTGGTGGCGGCCGGAGTTGA+TGG | 0.392958 | 8:+66944395 | None:intergenic |
| CACCACTCCTGTTGCATCTC+CGG | 0.398121 | 8:-66944378 | MsG0880045958.01.T01:CDS |
| AGAGTGGAGCAGAAACTATC+AGG | 0.404075 | 8:-66943135 | MsG0880045958.01.T01:CDS |
| GCTGCCGGAGGTTTGGTTGC+CGG | 0.408047 | 8:+66944272 | None:intergenic |
| GCACCACCAGCAGGAGCACC+TGG | 0.414679 | 8:-66944032 | MsG0880045958.01.T01:CDS |
| CCTGCATCTTCGCTTGGTCC+AGG | 0.415878 | 8:+66944014 | None:intergenic |
| GCTGGTGGTGGAGTGCTGAC+TGG | 0.421414 | 8:+66944230 | None:intergenic |
| GGTGGTGAGCTGACTGGAGC+AGG | 0.426318 | 8:+66944179 | None:intergenic |
| GCCGGAGCAGGTGCAGCAGC+TGG | 0.433970 | 8:+66944290 | None:intergenic |
| AGAGAAAGAGTGAGTGAGAG+AGG | 0.435994 | 8:+66944572 | None:intergenic |
| AGCACCATCACCAGCGTTGT+TGG | 0.436518 | 8:-66944063 | MsG0880045958.01.T01:CDS |
| GCACCATCACCAGCGTTGTT+GGG | 0.436941 | 8:-66944062 | MsG0880045958.01.T01:CDS |
| GCAGCTGGAGGAGATGATTT+GGG | 0.439226 | 8:+66944305 | None:intergenic |
| AGGTGACTGGCCTCCGACGC+CGG | 0.439946 | 8:+66944439 | None:intergenic |
| GGTGCTGGAGCTGGAACCGC+TGG | 0.440384 | 8:+66944122 | None:intergenic |
| GCTCCTGCTGGTGGTGCTGG+TGG | 0.457667 | 8:+66944038 | None:intergenic |
| TGCATTATCGTCGCCGGCGT+CGG | 0.458092 | 8:-66944452 | MsG0880045958.01.T01:CDS |
| TCCAGCTGCTGCACCTGCTC+CGG | 0.458206 | 8:-66944291 | MsG0880045958.01.T01:CDS |
| CTTGGTCCAGGTGCTCCTGC+TGG | 0.461592 | 8:+66944026 | None:intergenic |
| TGGTGATGCTGCCGGAGGTT+TGG | 0.463953 | 8:+66944265 | None:intergenic |
| TTGGGAGAAGCAACGGGAGC+TGG | 0.468676 | 8:+66944323 | None:intergenic |
| GAGCTGACTGGAGCAGGTGT+GGG | 0.472900 | 8:+66944185 | None:intergenic |
| TTGGTGCAGCGGAAGGTGAC+TGG | 0.475188 | 8:+66944426 | None:intergenic |
| ACAGGAACTGGTGCTGGTGG+TGG | 0.475601 | 8:+66944218 | None:intergenic |
| ACTGCTGGTGGTGAGCTGAC+TGG | 0.475791 | 8:+66944173 | None:intergenic |
| AGGCTTAGCTTTGAGCTGGA+TGG | 0.476021 | 8:-66943095 | MsG0880045958.01.T01:CDS |
| GGTGGTGATTTGACAGGAAC+TGG | 0.477818 | 8:+66944206 | None:intergenic |
| CAAGATTACCTCATCGTTCG+CGG | 0.478036 | 8:+66943971 | None:intergenic |
| TTCGCGGTAGAAGCGGGTCC+AGG | 0.478864 | 8:+66943987 | None:intergenic |
| GGTGCTCCTGCATCTTCGCT+TGG | 0.481476 | 8:+66944008 | None:intergenic |
| AGCGAAGATGCAGGAGCACC+TGG | 0.485174 | 8:-66944005 | MsG0880045958.01.T01:CDS |
| TGAGCTGACTGGAGCAGGTG+TGG | 0.488282 | 8:+66944184 | None:intergenic |
| CTCATCGTTCGCGGTAGAAG+CGG | 0.489228 | 8:+66943980 | None:intergenic |
| GCAACGGGAGCTGGTGTTGT+TGG | 0.490912 | 8:+66944332 | None:intergenic |
| GATGATTTGGGAGAAGCAAC+GGG | 0.491381 | 8:+66944317 | None:intergenic |
| GCTGCTACCGGAGATGCAAC+AGG | 0.501881 | 8:+66944371 | None:intergenic |
| GCAACAGGAGTGGTGGCGGC+CGG | 0.507920 | 8:+66944386 | None:intergenic |
| TCCAGCTCCAGCACCAAGCA+AGG | 0.510907 | 8:-66944114 | MsG0880045958.01.T01:CDS |
| TCATCGTTCGCGGTAGAAGC+GGG | 0.516917 | 8:+66943981 | None:intergenic |
| GGAGTTGATGGTGAGGTGGT+TGG | 0.517435 | 8:+66944407 | None:intergenic |
| GTGGTGGTTGGAGCAGCCAC+AGG | 0.519021 | 8:+66944146 | None:intergenic |
| CCTGGACCAAGCGAAGATGC+AGG | 0.520602 | 8:-66944014 | MsG0880045958.01.T01:CDS |
| GGTCCAGGTGCTCCTGCTGG+TGG | 0.523649 | 8:+66944029 | None:intergenic |
| AGCTGGAACCGCTGGTGTGG+TGG | 0.532724 | 8:+66944130 | None:intergenic |
| AGAGTGTGATAATAAGATCA+AGG | 0.533089 | 8:+66943039 | None:intergenic |
| GGAACCGCTGGTGTGGTGGT+TGG | 0.535849 | 8:+66944134 | None:intergenic |
| AACCACCTCACCATCAACTC+CGG | 0.540937 | 8:-66944405 | MsG0880045958.01.T01:CDS |
| AGATGATTTGGGAGAAGCAA+CGG | 0.541525 | 8:+66944316 | None:intergenic |
| GAGGTGGTTGGTGCAGCGGA+AGG | 0.541625 | 8:+66944419 | None:intergenic |
| AACAACGCTGGTGATGGTGC+TGG | 0.542731 | 8:+66944065 | None:intergenic |
| AGATGCAACAGGAGTGGTGG+CGG | 0.543847 | 8:+66944382 | None:intergenic |
| GTTGTTGGTGTGGTTGTAGG+AGG | 0.547446 | 8:+66944347 | None:intergenic |
| GAGAAAGAGTGAGTGAGAGA+GGG | 0.548946 | 8:+66944573 | None:intergenic |
| TAGGAGGCTTAGCTTTGAGC+TGG | 0.549247 | 8:-66943099 | MsG0880045958.01.T01:CDS |
| TGGAGCTGGAACCGCTGGTG+TGG | 0.549390 | 8:+66944127 | None:intergenic |
| GGTCCACCAGCACCACCAGC+AGG | 0.553644 | 8:-66944041 | MsG0880045958.01.T01:CDS |
| GGAGCAGGTGCAGCAGCTGG+AGG | 0.554589 | 8:+66944293 | None:intergenic |
| TTCATCTGCATTATCGTCGC+CGG | 0.560042 | 8:-66944458 | MsG0880045958.01.T01:CDS |
| TGCTCCGGCAACCAAACCTC+CGG | 0.560313 | 8:-66944276 | MsG0880045958.01.T01:CDS |
| CTGACTGGAGCAGGTGTGGG+TGG | 0.564849 | 8:+66944188 | None:intergenic |
| GGCCGGAGTTGATGGTGAGG+TGG | 0.565131 | 8:+66944403 | None:intergenic |
| ACCTCCGGCAGCATCACCAC+CGG | 0.566788 | 8:-66944261 | MsG0880045958.01.T01:CDS |
| GGACCCAACAACGCTGGTGA+TGG | 0.568484 | 8:+66944059 | None:intergenic |
| GATTTGACAGGAACTGGTGC+TGG | 0.568714 | 8:+66944212 | None:intergenic |
| GTGCTGACTGGTGTCACCGC+CGG | 0.572577 | 8:+66944242 | None:intergenic |
| ACCGCCGGTGGTGATGCTGC+CGG | 0.575279 | 8:+66944257 | None:intergenic |
| GCAGCCACAGGTGTTACTGC+TGG | 0.577094 | 8:+66944158 | None:intergenic |
| ATTATCGTCGCCGGCGTCGG+AGG | 0.579627 | 8:-66944449 | MsG0880045958.01.T01:CDS |
| CGGAGATGCAACAGGAGTGG+TGG | 0.583940 | 8:+66944379 | None:intergenic |
| GTTGTAGGAGGTGCTGCTAC+CGG | 0.584827 | 8:+66944359 | None:intergenic |
| ATAGTATCATAGATGTCTCA+AGG | 0.606965 | 8:+66942918 | None:intergenic |
| TGCTCCAACCACCACACCAG+CGG | 0.608500 | 8:-66944138 | MsG0880045958.01.T01:CDS |
| TGGTGAGGTGGTTGGTGCAG+CGG | 0.610327 | 8:+66944415 | None:intergenic |
| GGGAGCTGGTGTTGTTGGTG+TGG | 0.611766 | 8:+66944337 | None:intergenic |
| TTGACAGGAACTGGTGCTGG+TGG | 0.617477 | 8:+66944215 | None:intergenic |
| CGATAATGCAGATGAATGCG+AGG | 0.621043 | 8:+66944465 | None:intergenic |
| GCCGGTGGTGATGCTGCCGG+AGG | 0.626872 | 8:+66944260 | None:intergenic |
| ATCAGGAGCTTGAAGATGCT+AGG | 0.627021 | 8:-66943118 | MsG0880045958.01.T01:CDS |
| CTGACTGGTGTCACCGCCGG+TGG | 0.627806 | 8:+66944245 | None:intergenic |
| GGCGGCCGGAGTTGATGGTG+AGG | 0.629145 | 8:+66944400 | None:intergenic |
| TACCGGAGATGCAACAGGAG+TGG | 0.639684 | 8:+66944376 | None:intergenic |
| GGAAAGAAGAACAAGAAGCA+CGG | 0.641441 | 8:-66944092 | MsG0880045958.01.T01:CDS |
| CCAGCTCCAGCACCAAGCAA+GGG | 0.643686 | 8:-66944113 | MsG0880045958.01.T01:CDS |
| GGTGTGGGTGGTGATTTGAC+AGG | 0.655827 | 8:+66944200 | None:intergenic |
| GCTGGTGGACCCAACAACGC+TGG | 0.656094 | 8:+66944053 | None:intergenic |
| CGCTTCTACCGCGAACGATG+AGG | 0.660407 | 8:-66943979 | MsG0880045958.01.T01:intron |
| GCCACAGGTGTTACTGCTGG+TGG | 0.660434 | 8:+66944161 | None:intergenic |
| TCCGGCAGCATCACCACCGG+CGG | 0.672479 | 8:-66944258 | MsG0880045958.01.T01:CDS |
| AGGAGCTTGAAGATGCTAGG+AGG | 0.675654 | 8:-66943115 | MsG0880045958.01.T01:CDS |
| GATAATGCAGATGAATGCGA+GGG | 0.678738 | 8:+66944466 | None:intergenic |
| ACCACCAGCAGTAACACCTG+TGG | 0.703069 | 8:-66944162 | MsG0880045958.01.T01:CDS |
| ATAGTTAACATAGTACAATG+TGG | 0.738062 | 8:-66943912 | MsG0880045958.01.T01:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAAATTTATATTTATAT+TGG | + | Chr8:66944101-66944120 | None:intergenic | 0.0% |
| !! | AAGAATAAAAAAAAAAAAGA+TGG | + | Chr8:66944435-66944454 | None:intergenic | 10.0% |
| !! | TAAATATATTGTTTATACAA+TGG | - | Chr8:66943941-66943960 | MsG0880045958.01.T01:intron | 10.0% |
| !! | AAATAAGGTTATAAAGATAA+AGG | - | Chr8:66943819-66943838 | MsG0880045958.01.T01:intron | 15.0% |
| !! | AATAAGGTTATAAAGATAAA+GGG | - | Chr8:66943820-66943839 | MsG0880045958.01.T01:intron | 15.0% |
| !!! | ATTATTTTTTGAAAATGTTG+TGG | - | Chr8:66944552-66944571 | MsG0880045958.01.T01:five_prime_UTR | 15.0% |
| !! | AATGATGGTTTAATGTTAAT+CGG | - | Chr8:66944236-66944255 | MsG0880045958.01.T01:CDS | 20.0% |
| !! | GTATGATTATAAAACAATGA+TGG | - | Chr8:66944221-66944240 | MsG0880045958.01.T01:CDS | 20.0% |
| !! | TGAATAGTATATGTCTATTT+AGG | + | Chr8:66943918-66943937 | None:intergenic | 20.0% |
| !!! | AAGAAATTTCAAGATTTGTT+TGG | + | Chr8:66944263-66944282 | None:intergenic | 20.0% |
| !!! | AGAAAATATGTTCATAGTTT+TGG | - | Chr8:66943864-66943883 | MsG0880045958.01.T01:intron | 20.0% |
| !!! | ATTTTATTCATATTTGGATC+TGG | + | Chr8:66943794-66943813 | None:intergenic | 20.0% |
| ! | ACCATAAAAAGAAGAGTAAT+TGG | - | Chr8:66943705-66943724 | MsG0880045958.01.T01:intron | 25.0% |
| ! | ATAGTTAACATAGTACAATG+TGG | - | Chr8:66943522-66943541 | MsG0880045958.01.T01:intron | 25.0% |
| ! | CAAACTTTCAACTTTCAATA+TGG | - | Chr8:66942927-66942946 | MsG0880045958.01.T01:three_prime_UTR | 25.0% |
| ! | CTAACCAAAATCTAAGTTTA+AGG | - | Chr8:66943605-66943624 | MsG0880045958.01.T01:intron | 25.0% |
| !! | ACCAATTACTCTTCTTTTTA+TGG | + | Chr8:66943709-66943728 | None:intergenic | 25.0% |
| !! | TTTCATTTTCAGACCTAATA+AGG | + | Chr8:66943675-66943694 | None:intergenic | 25.0% |
| !!! | ATGAAATGATGTTAGTTTTC+TGG | - | Chr8:66944153-66944172 | MsG0880045958.01.T01:CDS | 25.0% |
| !!! | CTTATTTTTGGCTATCTTAT+GGG | - | Chr8:66944452-66944471 | MsG0880045958.01.T01:CDS | 25.0% |
| !!! | TCTTATTTTTGGCTATCTTA+TGG | - | Chr8:66944451-66944470 | MsG0880045958.01.T01:CDS | 25.0% |
| !!! | TGTGGTCATTATTTTATTCT+TGG | - | Chr8:66944570-66944589 | MsG0880045958.01.T01:five_prime_UTR | 25.0% |
| AGAGTGTGATAATAAGATCA+AGG | + | Chr8:66944398-66944417 | None:intergenic | 30.0% | |
| ATAGTATCATAGATGTCTCA+AGG | + | Chr8:66944519-66944538 | None:intergenic | 30.0% | |
| ATTAACAGTTACTGATGATC+TGG | - | Chr8:66943982-66944001 | MsG0880045958.01.T01:CDS | 30.0% | |
| TATTCATATTTGGATCTGGA+TGG | + | Chr8:66943790-66943809 | None:intergenic | 30.0% | |
| TTAACAGTTACTGATGATCT+GGG | - | Chr8:66943983-66944002 | MsG0880045958.01.T01:CDS | 30.0% | |
| ! | CACACCTTAAACTTAGATTT+TGG | + | Chr8:66943612-66943631 | None:intergenic | 30.0% |
| !! | GTTGTTTTATTCTTCTAGTC+TGG | - | Chr8:66944364-66944383 | MsG0880045958.01.T01:CDS | 30.0% |
| !!! | TGTTCCATTTTTTTTCAGAG+TGG | - | Chr8:66944283-66944302 | MsG0880045958.01.T01:CDS | 30.0% |
| ! | AAGATAAAGGGTGTACTATC+TGG | - | Chr8:66943832-66943851 | MsG0880045958.01.T01:intron | 35.0% |
| ! | TGCTCCACTCTGAAAAAAAA+TGG | + | Chr8:66944290-66944309 | None:intergenic | 35.0% |
| GATAATGCAGATGAATGCGA+GGG | + | Chr8:66942971-66942990 | None:intergenic | 40.0% | |
| GGAAAGAAGAACAAGAAGCA+CGG | - | Chr8:66943342-66943361 | MsG0880045958.01.T01:intron | 40.0% | |
| TTGTTCTTCTTTCCCTTGCT+TGG | + | Chr8:66943336-66943355 | None:intergenic | 40.0% | |
| ! | AGATGATTTGGGAGAAGCAA+CGG | + | Chr8:66943121-66943140 | None:intergenic | 40.0% |
| !!! | GAGCTGTCGTTTTTGTTTTC+TGG | - | Chr8:66943752-66943771 | MsG0880045958.01.T01:intron | 40.0% |
| AGAGTGGAGCAGAAACTATC+AGG | - | Chr8:66944299-66944318 | MsG0880045958.01.T01:CDS | 45.0% | |
| ATCAGGAGCTTGAAGATGCT+AGG | - | Chr8:66944316-66944335 | MsG0880045958.01.T01:CDS | 45.0% | |
| CAAGATTACCTCATCGTTCG+CGG | + | Chr8:66943466-66943485 | None:intergenic | 45.0% | |
| CGATAATGCAGATGAATGCG+AGG | + | Chr8:66942972-66942991 | None:intergenic | 45.0% | |
| GGTGTAGGAGACACCTTATT+AGG | - | Chr8:66943659-66943678 | MsG0880045958.01.T01:intron | 45.0% | |
| TTCATCTGCATTATCGTCGC+CGG | - | Chr8:66942976-66942995 | MsG0880045958.01.T01:three_prime_UTR | 45.0% | |
| ! | GATGATTTGGGAGAAGCAAC+GGG | + | Chr8:66943120-66943139 | None:intergenic | 45.0% |
| !! | TGAATAAAATAAATAAAATA+AGG | - | Chr8:66943804-66943823 | MsG0880045958.01.T01:intron | 5.0% |
| !!! | TTATTTATTTTATTCATATT+TGG | + | Chr8:66943800-66943819 | None:intergenic | 5.0% |
| !!! | TTTTTTTTTATTCTTATTTT+TGG | - | Chr8:66944440-66944459 | MsG0880045958.01.T01:CDS | 5.0% |
| AACCACCTCACCATCAACTC+CGG | - | Chr8:66943029-66943048 | MsG0880045958.01.T01:three_prime_UTR | 50.0% | |
| AGCAGCTGGAGGAGATGATT+TGG | + | Chr8:66943133-66943152 | None:intergenic | 50.0% | |
| AGGAGCTTGAAGATGCTAGG+AGG | - | Chr8:66944319-66944338 | MsG0880045958.01.T01:CDS | 50.0% | |
| GATTTGACAGGAACTGGTGC+TGG | + | Chr8:66943225-66943244 | None:intergenic | 50.0% | |
| GCAGCTGGAGGAGATGATTT+GGG | + | Chr8:66943132-66943151 | None:intergenic | 50.0% | |
| GGTGGTGATTTGACAGGAAC+TGG | + | Chr8:66943231-66943250 | None:intergenic | 50.0% | |
| GTTGTTGGTGTGGTTGTAGG+AGG | + | Chr8:66943090-66943109 | None:intergenic | 50.0% | |
| !! | AGGCTTAGCTTTGAGCTGGA+TGG | - | Chr8:66944339-66944358 | MsG0880045958.01.T01:CDS | 50.0% |
| !! | GGTGTTGTTGGTGTGGTTGT+AGG | + | Chr8:66943093-66943112 | None:intergenic | 50.0% |
| !! | TAGGAGGCTTAGCTTTGAGC+TGG | - | Chr8:66944335-66944354 | MsG0880045958.01.T01:CDS | 50.0% |
| !! | TTCTTTCCCTTGCTTGGTGC+TGG | + | Chr8:66943330-66943349 | None:intergenic | 50.0% |
| ACCACCAGCAGTAACACCTG+TGG | - | Chr8:66943272-66943291 | MsG0880045958.01.T01:intron | 55.0% | |
| AGATGCAACAGGAGTGGTGG+CGG | + | Chr8:66943055-66943074 | None:intergenic | 55.0% | |
| AGCACCATCACCAGCGTTGT+TGG | - | Chr8:66943371-66943390 | MsG0880045958.01.T01:intron | 55.0% | |
| CACCACTCCTGTTGCATCTC+CGG | - | Chr8:66943056-66943075 | MsG0880045958.01.T01:exon | 55.0% | |
| CTCATCGTTCGCGGTAGAAG+CGG | + | Chr8:66943457-66943476 | None:intergenic | 55.0% | |
| GCACCATCACCAGCGTTGTT+GGG | - | Chr8:66943372-66943391 | MsG0880045958.01.T01:intron | 55.0% | |
| GGTGTGGGTGGTGATTTGAC+AGG | + | Chr8:66943237-66943256 | None:intergenic | 55.0% | |
| TACACCGAACCCACCGTCAA+TGG | + | Chr8:66943645-66943664 | None:intergenic | 55.0% | |
| TACCGGAGATGCAACAGGAG+TGG | + | Chr8:66943061-66943080 | None:intergenic | 55.0% | |
| TCATCGTTCGCGGTAGAAGC+GGG | + | Chr8:66943456-66943475 | None:intergenic | 55.0% | |
| ! | TTGACAGGAACTGGTGCTGG+TGG | + | Chr8:66943222-66943241 | None:intergenic | 55.0% |
| !! | AACAACGCTGGTGATGGTGC+TGG | + | Chr8:66943372-66943391 | None:intergenic | 55.0% |
| !! | ATTGACGGTGGGTTCGGTGT+AGG | - | Chr8:66943644-66943663 | MsG0880045958.01.T01:intron | 55.0% |
| !! | GGAGTTGATGGTGAGGTGGT+TGG | + | Chr8:66943030-66943049 | None:intergenic | 55.0% |
| !! | GTTGTAGGAGGTGCTGCTAC+CGG | + | Chr8:66943078-66943097 | None:intergenic | 55.0% |
| ACCGAACCCACCGTCAATGG+TGG | + | Chr8:66943642-66943661 | None:intergenic | 60.0% | |
| CCAGCTCCAGCACCAAGCAA+GGG | - | Chr8:66943321-66943340 | MsG0880045958.01.T01:intron | 60.0% | |
| CCTGCATCTTCGCTTGGTCC+AGG | + | Chr8:66943423-66943442 | None:intergenic | 60.0% | |
| CCTGGACCAAGCGAAGATGC+AGG | - | Chr8:66943420-66943439 | MsG0880045958.01.T01:intron | 60.0% | |
| CGCTTCTACCGCGAACGATG+AGG | - | Chr8:66943455-66943474 | MsG0880045958.01.T01:intron | 60.0% | |
| CGGAGATGCAACAGGAGTGG+TGG | + | Chr8:66943058-66943077 | None:intergenic | 60.0% | |
| GAGCTGACTGGAGCAGGTGT+GGG | + | Chr8:66943252-66943271 | None:intergenic | 60.0% | |
| GCTGCTACCGGAGATGCAAC+AGG | + | Chr8:66943066-66943085 | None:intergenic | 60.0% | |
| GGACCCAACAACGCTGGTGA+TGG | + | Chr8:66943378-66943397 | None:intergenic | 60.0% | |
| GGTGCTCCTGCATCTTCGCT+TGG | + | Chr8:66943429-66943448 | None:intergenic | 60.0% | |
| TCCAGCTCCAGCACCAAGCA+AGG | - | Chr8:66943320-66943339 | MsG0880045958.01.T01:intron | 60.0% | |
| TGAGCTGACTGGAGCAGGTG+TGG | + | Chr8:66943253-66943272 | None:intergenic | 60.0% | |
| TGCATTATCGTCGCCGGCGT+CGG | - | Chr8:66942982-66943001 | MsG0880045958.01.T01:three_prime_UTR | 60.0% | |
| TGCTCCAACCACCACACCAG+CGG | - | Chr8:66943296-66943315 | MsG0880045958.01.T01:intron | 60.0% | |
| TGCTCCGGCAACCAAACCTC+CGG | - | Chr8:66943158-66943177 | MsG0880045958.01.T01:intron | 60.0% | |
| TTGGGAGAAGCAACGGGAGC+TGG | + | Chr8:66943114-66943133 | None:intergenic | 60.0% | |
| TTGGTGCAGCGGAAGGTGAC+TGG | + | Chr8:66943011-66943030 | None:intergenic | 60.0% | |
| ! | ACTGCTGGTGGTGAGCTGAC+TGG | + | Chr8:66943264-66943283 | None:intergenic | 60.0% |
| ! | GCCACCATTGACGGTGGGTT+CGG | - | Chr8:66943638-66943657 | MsG0880045958.01.T01:intron | 60.0% |
| ! | TGGTGAGGTGGTTGGTGCAG+CGG | + | Chr8:66943022-66943041 | None:intergenic | 60.0% |
| ! | TGGTGATGCTGCCGGAGGTT+TGG | + | Chr8:66943172-66943191 | None:intergenic | 60.0% |
| !! | ACAGGAACTGGTGCTGGTGG+TGG | + | Chr8:66943219-66943238 | None:intergenic | 60.0% |
| !! | AGCGAAGATGCAGGAGCACC+TGG | - | Chr8:66943429-66943448 | MsG0880045958.01.T01:intron | 60.0% |
| !! | GCAACGGGAGCTGGTGTTGT+TGG | + | Chr8:66943105-66943124 | None:intergenic | 60.0% |
| !! | GCAGCCACAGGTGTTACTGC+TGG | + | Chr8:66943279-66943298 | None:intergenic | 60.0% |
| !! | GCCACAGGTGTTACTGCTGG+TGG | + | Chr8:66943276-66943295 | None:intergenic | 60.0% |
| !! | GGGAGCTGGTGTTGTTGGTG+TGG | + | Chr8:66943100-66943119 | None:intergenic | 60.0% |
| ACCTCCGGCAGCATCACCAC+CGG | - | Chr8:66943173-66943192 | MsG0880045958.01.T01:intron | 65.0% | |
| AGCTGGAACCGCTGGTGTGG+TGG | + | Chr8:66943307-66943326 | None:intergenic | 65.0% | |
| CACGCGCCACCATTGACGGT+GGG | - | Chr8:66943633-66943652 | MsG0880045958.01.T01:intron | 65.0% | |
| CTGACTGGAGCAGGTGTGGG+TGG | + | Chr8:66943249-66943268 | None:intergenic | 65.0% | |
| CTTGGTCCAGGTGCTCCTGC+TGG | + | Chr8:66943411-66943430 | None:intergenic | 65.0% | |
| GGAACCGCTGGTGTGGTGGT+TGG | + | Chr8:66943303-66943322 | None:intergenic | 65.0% | |
| GGTGGTGAGCTGACTGGAGC+AGG | + | Chr8:66943258-66943277 | None:intergenic | 65.0% | |
| GTGCCACGCGCCACCATTGA+CGG | - | Chr8:66943629-66943648 | MsG0880045958.01.T01:intron | 65.0% | |
| GTGGTGGTTGGAGCAGCCAC+AGG | + | Chr8:66943291-66943310 | None:intergenic | 65.0% | |
| TCCAGCTGCTGCACCTGCTC+CGG | - | Chr8:66943143-66943162 | MsG0880045958.01.T01:intron | 65.0% | |
| TGGAGCTGGAACCGCTGGTG+TGG | + | Chr8:66943310-66943329 | None:intergenic | 65.0% | |
| TTCGCGGTAGAAGCGGGTCC+AGG | + | Chr8:66943450-66943469 | None:intergenic | 65.0% | |
| ! | ATTATCGTCGCCGGCGTCGG+AGG | - | Chr8:66942985-66943004 | MsG0880045958.01.T01:three_prime_UTR | 65.0% |
| ! | GAGGTGGTTGGTGCAGCGGA+AGG | + | Chr8:66943018-66943037 | None:intergenic | 65.0% |
| ! | GCTGCCGGAGGTTTGGTTGC+CGG | + | Chr8:66943165-66943184 | None:intergenic | 65.0% |
| ! | GCTGGTGGACCCAACAACGC+TGG | + | Chr8:66943384-66943403 | None:intergenic | 65.0% |
| ! | GGAGGTTTGGTTGCCGGAGC+AGG | + | Chr8:66943159-66943178 | None:intergenic | 65.0% |
| !! | CCCTTGCTTGGTGCTGGAGC+TGG | + | Chr8:66943324-66943343 | None:intergenic | 65.0% |
| !! | GCTGGTGGTGGAGTGCTGAC+TGG | + | Chr8:66943207-66943226 | None:intergenic | 65.0% |
| !! | GGCCGGAGTTGATGGTGAGG+TGG | + | Chr8:66943034-66943053 | None:intergenic | 65.0% |
| !! | GTGCTGACTGGTGTCACCGC+CGG | + | Chr8:66943195-66943214 | None:intergenic | 65.0% |
| CCACGCGCCACCATTGACGG+TGG | - | Chr8:66943632-66943651 | MsG0880045958.01.T01:intron | 70.0% | |
| GGAGCAGGTGCAGCAGCTGG+AGG | + | Chr8:66943144-66943163 | None:intergenic | 70.0% | |
| GGTCCACCAGCACCACCAGC+AGG | - | Chr8:66943393-66943412 | MsG0880045958.01.T01:intron | 70.0% | |
| GGTCCAGGTGCTCCTGCTGG+TGG | + | Chr8:66943408-66943427 | None:intergenic | 70.0% | |
| TCCGGCAGCATCACCACCGG+CGG | - | Chr8:66943176-66943195 | MsG0880045958.01.T01:intron | 70.0% | |
| ! | ACCGCCGGTGGTGATGCTGC+CGG | + | Chr8:66943180-66943199 | None:intergenic | 70.0% |
| ! | CCACCGTCAATGGTGGCGCG+TGG | + | Chr8:66943635-66943654 | None:intergenic | 70.0% |
| ! | GCTCCTGCTGGTGGTGCTGG+TGG | + | Chr8:66943399-66943418 | None:intergenic | 70.0% |
| ! | GGTGCTCCTGCTGGTGGTGC+TGG | + | Chr8:66943402-66943421 | None:intergenic | 70.0% |
| ! | GGTGCTGGAGCTGGAACCGC+TGG | + | Chr8:66943315-66943334 | None:intergenic | 70.0% |
| !! | AGGTGACTGGCCTCCGACGC+CGG | + | Chr8:66942998-66943017 | None:intergenic | 70.0% |
| !! | CTGACTGGTGTCACCGCCGG+TGG | + | Chr8:66943192-66943211 | None:intergenic | 70.0% |
| !! | GCAACAGGAGTGGTGGCGGC+CGG | + | Chr8:66943051-66943070 | None:intergenic | 70.0% |
| !! | GCACCACCAGCAGGAGCACC+TGG | - | Chr8:66943402-66943421 | MsG0880045958.01.T01:intron | 70.0% |
| !! | GGCGGCCGGAGTTGATGGTG+AGG | + | Chr8:66943037-66943056 | None:intergenic | 70.0% |
| !! | GTGGTGGCGGCCGGAGTTGA+TGG | + | Chr8:66943042-66943061 | None:intergenic | 70.0% |
| GCCGGAGCAGGTGCAGCAGC+TGG | + | Chr8:66943147-66943166 | None:intergenic | 75.0% | |
| ! | GCCGGTGGTGATGCTGCCGG+AGG | + | Chr8:66943177-66943196 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 66942863 | 66944593 | 66942863 | ID=MsG0880045958.01;Name=MsG0880045958.01 |
| Chr8 | mRNA | 66942863 | 66944593 | 66942863 | ID=MsG0880045958.01.T01;Parent=MsG0880045958.01;Name=MsG0880045958.01.T01;_AED=0.25;_eAED=0.25;_QI=83|1|1|1|0|0|2|212|203 |
| Chr8 | exon | 66942863 | 66943155 | 66942863 | ID=MsG0880045958.01.T01:exon:32461;Parent=MsG0880045958.01.T01 |
| Chr8 | exon | 66943980 | 66944593 | 66943980 | ID=MsG0880045958.01.T01:exon:32460;Parent=MsG0880045958.01.T01 |
| Chr8 | five_prime_UTR | 66944511 | 66944593 | 66944511 | ID=MsG0880045958.01.T01:five_prime_utr;Parent=MsG0880045958.01.T01 |
| Chr8 | CDS | 66943980 | 66944510 | 66943980 | ID=MsG0880045958.01.T01:cds;Parent=MsG0880045958.01.T01 |
| Chr8 | CDS | 66943075 | 66943155 | 66943075 | ID=MsG0880045958.01.T01:cds;Parent=MsG0880045958.01.T01 |
| Chr8 | three_prime_UTR | 66942863 | 66943074 | 66942863 | ID=MsG0880045958.01.T01:three_prime_utr;Parent=MsG0880045958.01.T01 |
| Chr8 | mRNA | 66943848 | 66944510 | 66943848 | ID=MsG0880045958.01.T02;Parent=MsG0880045958.01;Name=MsG0880045958.01.T02;_AED=0.32;_eAED=0.32;_QI=0|-1|0|1|-1|0|1|0|220 |
| Chr8 | exon | 66943848 | 66944510 | 66943848 | ID=MsG0880045958.01.T02:exon:32462;Parent=MsG0880045958.01.T02 |
| Chr8 | CDS | 66943848 | 66944510 | 66943848 | ID=MsG0880045958.01.T02:cds;Parent=MsG0880045958.01.T02 |
| Gene Sequence |
| Protein sequence |
