AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580024601.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024601.01.T01 MTR_5g013640 94.415 376 20 1 4 378 35 410 0.0 749
MsG0580024601.01.T01 MTR_5g013620 91.799 378 30 1 1 378 36 412 0.0 740
MsG0580024601.01.T01 MTR_4g099110 80.508 354 69 0 29 382 52 405 0.0 627
MsG0580024601.01.T01 MTR_4g045667 53.517 327 148 3 53 378 11 334 3.18e-128 378
MsG0580024601.01.T01 MTR_2g089030 54.268 328 146 3 52 378 83 407 2.08e-125 374
MsG0580024601.01.T01 MTR_8g099775 51.734 346 158 5 40 378 61 404 9.33e-123 365
MsG0580024601.01.T01 MTR_6g477780 67.382 233 75 1 147 378 10 242 1.42e-121 357
MsG0580024601.01.T01 MTR_7g077410 50.289 346 167 4 33 377 243 584 5.41e-111 340
MsG0580024601.01.T01 MTR_2g020240 44.083 338 183 2 42 378 70 402 7.36e-97 299
MsG0580024601.01.T01 MTR_5g026210 40.000 375 214 7 8 377 169 537 3.36e-93 293
MsG0580024601.01.T01 MTR_5g026210 40.308 325 184 7 25 347 189 505 9.82e-81 256
MsG0580024601.01.T01 MTR_2g020240 44.444 270 145 1 109 378 3 267 1.15e-79 250
MsG0580024601.01.T01 MTR_5g026210 40.942 276 157 5 25 298 189 460 8.51e-69 224
MsG0580024601.01.T01 MTR_6g477770 66.667 93 31 0 55 147 106 198 7.50e-41 143
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024601.01.T01 AT4G17090 75.946 370 85 3 9 377 42 408 0.0 602
MsG0580024601.01.T01 AT3G23920 64.384 365 124 3 15 378 71 430 2.62e-176 503
MsG0580024601.01.T01 AT4G15210 53.049 328 149 4 53 378 12 336 5.21e-127 372
MsG0580024601.01.T01 AT4G15210 53.049 328 149 4 53 378 12 336 2.59e-126 373
MsG0580024601.01.T01 AT4G00490 47.581 372 187 5 10 377 47 414 3.63e-117 351
MsG0580024601.01.T01 AT4G15210 54.545 286 126 3 94 378 1 283 4.55e-116 345
MsG0580024601.01.T01 AT4G15210 54.545 286 126 3 94 378 1 283 4.55e-116 345
MsG0580024601.01.T01 AT2G32290 51.524 328 154 4 52 377 75 399 3.43e-114 345
MsG0580024601.01.T01 AT2G45880 48.961 337 167 4 42 377 235 567 9.13e-109 334
MsG0580024601.01.T01 AT5G55700 46.429 336 169 3 54 378 91 426 3.01e-106 323
MsG0580024601.01.T01 AT5G45300 44.277 332 180 4 47 377 247 574 1.09e-92 292
MsG0580024601.01.T01 AT5G45300 44.277 332 180 4 47 377 245 572 1.30e-92 292
MsG0580024601.01.T01 AT5G45300 44.277 332 180 4 47 377 261 588 1.70e-92 292
MsG0580024601.01.T01 AT5G18670 43.210 324 176 2 55 378 87 402 2.43e-85 269
MsG0580024601.01.T01 AT5G55700 49.778 225 106 2 161 378 39 263 6.24e-74 234

Find 93 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATAGATTCACAGATTATT+TGG 0.131732 5:-6779526 MsG0580024601.01.T01:CDS
TTCCAAGTTCCATCAGTTTC+AGG 0.191128 5:+6779088 None:intergenic
ATGGTCCTATGAAGTATAAT+TGG 0.246951 5:-6780023 MsG0580024601.01.T01:CDS
CTGGTTTACACAGACAAATT+AGG 0.254676 5:-6779651 MsG0580024601.01.T01:CDS
ACAGTATATGAGATCTTCTT+TGG 0.254734 5:-6778887 MsG0580024601.01.T01:intron
ACTTGTTTGAAATATGCTTT+TGG 0.284260 5:+6778669 None:intergenic
ACTTGGAAGTTTCCAGGAAT+TGG 0.297749 5:-6779073 MsG0580024601.01.T01:CDS
GGTTGATGCTTGGTGGGGTT+TGG 0.299766 5:-6780055 MsG0580024601.01.T01:CDS
GGAACATGGAACACAGAATA+TGG 0.310195 5:-6778757 MsG0580024601.01.T01:CDS
CATTGGAATTCTCCAATTCC+TGG 0.333977 5:+6779061 None:intergenic
GATGGAACTTGGAAGTTTCC+AGG 0.338985 5:-6779079 MsG0580024601.01.T01:CDS
TTTGCTAGCATTTGTGCTAT+TGG 0.345574 5:+6778532 None:intergenic
GAAGCATCAGCTGCAGCAAT+TGG 0.348122 5:-6778865 MsG0580024601.01.T01:CDS
ATGGAGATTTCTTCCTTGAT+TGG 0.348721 5:-6778738 MsG0580024601.01.T01:CDS
CATGGGTGCTTGAAGAAATA+AGG 0.350399 5:-6779686 MsG0580024601.01.T01:CDS
GAAATGTTGGTGACTCTTGC+AGG 0.358515 5:-6779918 MsG0580024601.01.T01:intron
ACAGCCCAACGAGATGTATT+CGG 0.366361 5:+6779617 None:intergenic
GATAGATTCACAGATTATTT+GGG 0.369481 5:-6779525 MsG0580024601.01.T01:CDS
ACAAGTGGACCACATGATTC+TGG 0.376267 5:-6778826 MsG0580024601.01.T01:CDS
CCCATTGTTACCGTGTCTAA+TGG 0.379739 5:+6780153 None:intergenic
AATCAATATCCTGAAGATAC+TGG 0.386987 5:-6778796 MsG0580024601.01.T01:CDS
TGGTTTACACAGACAAATTA+GGG 0.392347 5:-6779650 MsG0580024601.01.T01:CDS
TAAACAAACATTCTTAGTTA+AGG 0.395318 5:-6780322 MsG0580024601.01.T01:CDS
CAGTTAAGGAAAACAAGAAA+TGG 0.402206 5:-6780251 MsG0580024601.01.T01:CDS
TTGTCTGTGTAAACCAGCTC+AGG 0.410476 5:+6779657 None:intergenic
GCTTCCCAATTATACTTCAT+AGG 0.415265 5:+6780018 None:intergenic
CAGCCCAACGAGATGTATTC+GGG 0.415616 5:+6779618 None:intergenic
AGCTGGAAGAACTCCACTTC+AGG 0.421399 5:-6779577 MsG0580024601.01.T01:CDS
CTAGCATACCTTTACCTCCA+TGG 0.426539 5:-6779704 MsG0580024601.01.T01:intron
ACGGAAGCTTCTCATGTAAT+CGG 0.432165 5:+6779548 None:intergenic
AGCAATGAATGCTAGTTTGA+TGG 0.437255 5:-6780109 MsG0580024601.01.T01:CDS
AAACACCAACTCTACAGTTA+AGG 0.445155 5:-6780265 MsG0580024601.01.T01:CDS
TCCAAGTTCCATCAGTTTCA+GGG 0.453104 5:+6779089 None:intergenic
TAGCATACCTTTACCTCCAT+GGG 0.456896 5:-6779703 MsG0580024601.01.T01:CDS
TTTGTACCTTGTCATAGCAT+TGG 0.457100 5:+6779044 None:intergenic
GGAGTTCTTCCAGCTAGAAC+AGG 0.462089 5:+6779585 None:intergenic
CCATCAGTTTCAGGGTAAGA+TGG 0.465255 5:+6779097 None:intergenic
GATTCAGTGCCTGTTCTAGC+TGG 0.467117 5:-6779594 MsG0580024601.01.T01:CDS
TCAAGCACCCATGGAGGTAA+AGG 0.469083 5:+6779696 None:intergenic
TTGAAGAGTGCTGGAGTTGA+AGG 0.475342 5:-6780084 MsG0580024601.01.T01:CDS
AGTAATGGTTGATGCTTGGT+GGG 0.476693 5:-6780061 MsG0580024601.01.T01:CDS
TGGTCCTATGAAGTATAATT+GGG 0.480087 5:-6780022 MsG0580024601.01.T01:CDS
CTTATTTCTTCAAGCACCCA+TGG 0.485962 5:+6779687 None:intergenic
ACCCTGAAACTGATGGAACT+TGG 0.491404 5:-6779090 MsG0580024601.01.T01:CDS
AAGGAAATTCAAGTGGGACT+AGG 0.494078 5:-6779142 MsG0580024601.01.T01:CDS
AGTTAAGGAAAACAAGAAAT+GGG 0.500489 5:-6780250 MsG0580024601.01.T01:CDS
CCATTAGACACGGTAACAAT+GGG 0.505572 5:-6780153 MsG0580024601.01.T01:CDS
AAAAGCATATTTCAAACAAG+TGG 0.507306 5:-6778667 MsG0580024601.01.T01:CDS
GAGTAATGGTTGATGCTTGG+TGG 0.507394 5:-6780062 MsG0580024601.01.T01:CDS
TTGATGGCATTGAAGAGTGC+TGG 0.508850 5:-6780093 MsG0580024601.01.T01:CDS
CATCAATGTGGTGGAAATGT+TGG 0.516528 5:-6779931 MsG0580024601.01.T01:CDS
TTATGCTGAGCTTGTTCAGA+TGG 0.518500 5:-6779995 MsG0580024601.01.T01:CDS
GTAATGGTTGATGCTTGGTG+GGG 0.525670 5:-6780060 MsG0580024601.01.T01:CDS
AGCACAAATGCTAGCAAACA+TGG 0.531275 5:-6778527 MsG0580024601.01.T01:CDS
AATCCCGAATACATCTCGTT+GGG 0.532457 5:-6779621 MsG0580024601.01.T01:CDS
AAGCATCAGCTGCAGCAATT+GGG 0.535892 5:-6778864 MsG0580024601.01.T01:CDS
CCATCTTACCCTGAAACTGA+TGG 0.538520 5:-6779097 MsG0580024601.01.T01:CDS
GCCATTAGACACGGTAACAA+TGG 0.539108 5:-6780154 MsG0580024601.01.T01:CDS
CAGCAATTGGGAAGAAAGAG+TGG 0.543241 5:-6778852 MsG0580024601.01.T01:CDS
TAATCGGAGTAGACCTGAAG+TGG 0.543820 5:+6779564 None:intergenic
TGCTGGAGTTGAAGGAGTAA+TGG 0.546595 5:-6780076 MsG0580024601.01.T01:CDS
GTTTGCTTGAGTACCAATCA+AGG 0.552816 5:+6778725 None:intergenic
TATAACACAAGGTTTCATGA+TGG 0.559816 5:-6778562 MsG0580024601.01.T01:CDS
CTGCAGGTTACTATAACACA+AGG 0.561651 5:-6778573 MsG0580024601.01.T01:CDS
AAGGAGTAATGGTTGATGCT+TGG 0.565190 5:-6780065 MsG0580024601.01.T01:CDS
GTTCAGATGGTACAAAAGCA+TGG 0.567071 5:-6779982 MsG0580024601.01.T01:CDS
GAATCCCGAATACATCTCGT+TGG 0.567655 5:-6779622 MsG0580024601.01.T01:CDS
ACACAGACAAATTAGGGAGG+AGG 0.571216 5:-6779644 MsG0580024601.01.T01:CDS
AATAAGGAAGAACCCTGAGC+TGG 0.576300 5:-6779670 MsG0580024601.01.T01:CDS
AATAATCTGTGAATCTATCA+CGG 0.584013 5:+6779529 None:intergenic
CATGCAACTGAATTAACTGC+AGG 0.589620 5:-6778589 MsG0580024601.01.T01:CDS
AAGAAAGAGTGGGGAACAAG+TGG 0.590788 5:-6778841 MsG0580024601.01.T01:CDS
GGATATCTCAACTCCCCACA+TGG 0.597220 5:+6779118 None:intergenic
TGCTGATTCGAATAGAGTAC+CGG 0.599220 5:-6780190 MsG0580024601.01.T01:CDS
AAGTGGGACTAGGTCCATGT+GGG 0.602013 5:-6779132 MsG0580024601.01.T01:CDS
TCATTTGAAGGAAATTCAAG+TGG 0.603673 5:-6779149 MsG0580024601.01.T01:intron
AGCAATTGGGAAGAAAGAGT+GGG 0.613841 5:-6778851 MsG0580024601.01.T01:CDS
TCAAGCAAACTTGTTGAACA+TGG 0.618498 5:-6778712 MsG0580024601.01.T01:CDS
TGTCTGTGTAAACCAGCTCA+GGG 0.638501 5:+6779658 None:intergenic
ATGCAAGAAACATTTCACAA+AGG 0.640277 5:-6780289 MsG0580024601.01.T01:CDS
CAAGTGGGACTAGGTCCATG+TGG 0.641124 5:-6779133 MsG0580024601.01.T01:CDS
TCGTGGTTATGAGCAATCGA+TGG 0.660833 5:+6780213 None:intergenic
AATGGCAACATCACAAACAC+CGG 0.660873 5:+6780171 None:intergenic
TTAGACACGGTAACAATGGG+AGG 0.667348 5:-6780150 MsG0580024601.01.T01:CDS
CATTTGAAGGAAATTCAAGT+GGG 0.670355 5:-6779148 MsG0580024601.01.T01:intron
CTCTATTCGAATCAGCATCG+TGG 0.679739 5:+6780196 None:intergenic
ATTTCTTCAAGCACCCATGG+AGG 0.686996 5:+6779690 None:intergenic
AGAATTCCAATGCTATGACA+AGG 0.689937 5:-6779050 MsG0580024601.01.T01:intron
TGTGATGTTGCCATTAGACA+CGG 0.702107 5:-6780163 MsG0580024601.01.T01:CDS
GCAATTGGGAAGAAAGAGTG+GGG 0.706843 5:-6778850 MsG0580024601.01.T01:CDS
AGTGGGACTAGGTCCATGTG+GGG 0.709601 5:-6779131 MsG0580024601.01.T01:CDS
TTGTATTGACCAGAATCATG+TGG 0.728140 5:+6778817 None:intergenic
TTTACACAGACAAATTAGGG+AGG 0.734523 5:-6779647 MsG0580024601.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAAGAATTTAATATACT+TGG - Chr5:6780187-6780206 MsG0580024601.01.T01:CDS 10.0%
!! TATTAATGAAATAATTCATA+TGG - Chr5:6779169-6779188 MsG0580024601.01.T01:intron 10.0%
!!! AGTATCATATTTTTTATTTT+TGG + Chr5:6779887-6779906 None:intergenic 10.0%
!! TTTCATATATGCTAAAAAAA+AGG + Chr5:6778748-6778767 None:intergenic 15.0%
!!! CTTAATAAGATAACTTTTTA+TGG + Chr5:6779253-6779272 None:intergenic 15.0%
!!! TTAGCATATATGAAATATTT+TGG - Chr5:6778753-6778772 MsG0580024601.01.T01:CDS 15.0%
!! ATTAAAACCAAATCATTTGA+AGG - Chr5:6780472-6780491 MsG0580024601.01.T01:intron 20.0%
!! TAAACAAACATTCTTAGTTA+AGG - Chr5:6779311-6779330 MsG0580024601.01.T01:intron 20.0%
!! TACATTCAATTTGTCATATA+AGG - Chr5:6780361-6780380 MsG0580024601.01.T01:intron 20.0%
!! TTAAATATGTTTAAACCAAG+TGG + Chr5:6778537-6778556 None:intergenic 20.0%
!!! TGTAAATTTTAAGGAGAAAA+GGG - Chr5:6779139-6779158 MsG0580024601.01.T01:CDS 20.0%
! AATAATCTGTGAATCTATCA+CGG + Chr5:6780107-6780126 None:intergenic 25.0%
! ACTTGAGTAAATAAACATGT+CGG - Chr5:6779023-6779042 MsG0580024601.01.T01:intron 25.0%
! AGTTAAGGAAAACAAGAAAT+GGG - Chr5:6779383-6779402 MsG0580024601.01.T01:intron 25.0%
! GATAGATTCACAGATTATTT+GGG - Chr5:6780108-6780127 MsG0580024601.01.T01:CDS 25.0%
! GCAACAAGTTTAATAGTATT+TGG - Chr5:6779062-6779081 MsG0580024601.01.T01:CDS 25.0%
! TAATATTCAACCACCAATTT+AGG - Chr5:6779764-6779783 MsG0580024601.01.T01:intron 25.0%
! TATGCTAAAAAAAAGGTCAA+TGG + Chr5:6778741-6778760 None:intergenic 25.0%
! TGAATTTCCTTCAAATGATT+TGG + Chr5:6780482-6780501 None:intergenic 25.0%
! TGATAGATTCACAGATTATT+TGG - Chr5:6780107-6780126 MsG0580024601.01.T01:CDS 25.0%
! TGTCTAACATCAATATGATT+TGG + Chr5:6780651-6780670 None:intergenic 25.0%
! TTAATAGTATTTGGCATGAA+GGG - Chr5:6779071-6779090 MsG0580024601.01.T01:CDS 25.0%
! TTTAATAGTATTTGGCATGA+AGG - Chr5:6779070-6779089 MsG0580024601.01.T01:CDS 25.0%
!! AAAAGCATATTTCAAACAAG+TGG - Chr5:6780966-6780985 MsG0580024601.01.T01:intron 25.0%
!! AAGATTTCTTCTGATAATGA+TGG - Chr5:6778976-6778995 MsG0580024601.01.T01:intron 25.0%
!! AGATTTCTTCTGATAATGAT+GGG - Chr5:6778977-6778996 MsG0580024601.01.T01:intron 25.0%
!! GGAAATTGGTGTAAATTTTA+AGG - Chr5:6779130-6779149 MsG0580024601.01.T01:CDS 25.0%
!! TGTTTGAAAGTAAGTCATTT+TGG + Chr5:6780729-6780748 None:intergenic 25.0%
!!! AAGATACTGGATTTTTCAAA+AGG - Chr5:6780850-6780869 MsG0580024601.01.T01:intron 25.0%
!!! ACTTGTTTGAAATATGCTTT+TGG + Chr5:6780967-6780986 None:intergenic 25.0%
!!! AGATACTGGATTTTTCAAAA+GGG - Chr5:6780851-6780870 MsG0580024601.01.T01:intron 25.0%
!!! GTGTAAATTTTAAGGAGAAA+AGG - Chr5:6779138-6779157 MsG0580024601.01.T01:CDS 25.0%
!!! TTGATAGCATACATTTTTGT+GGG + Chr5:6778581-6778600 None:intergenic 25.0%
!!! TTTGATAGCATACATTTTTG+TGG + Chr5:6778582-6778601 None:intergenic 25.0%
AAAAAAAAGGTCAATGGCTT+GGG + Chr5:6778735-6778754 None:intergenic 30.0%
AAACTATCAGCAAAAATAGC+TGG - Chr5:6780993-6781012 MsG0580024601.01.T01:intron 30.0%
AATCAATATCCTGAAGATAC+TGG - Chr5:6780837-6780856 MsG0580024601.01.T01:intron 30.0%
ACACTAAATAGAGCCTAAAT+TGG + Chr5:6779780-6779799 None:intergenic 30.0%
ACAGTATATGAGATCTTCTT+TGG - Chr5:6780746-6780765 MsG0580024601.01.T01:intron 30.0%
ATACAGACTTGAAAATTTGC+TGG - Chr5:6778950-6778969 MsG0580024601.01.T01:intron 30.0%
ATGCAAGAAACATTTCACAA+AGG - Chr5:6779344-6779363 MsG0580024601.01.T01:intron 30.0%
ATGGTCCTATGAAGTATAAT+TGG - Chr5:6779610-6779629 MsG0580024601.01.T01:CDS 30.0%
CAAAAATAGCTGGAATTCAT+TGG - Chr5:6781003-6781022 MsG0580024601.01.T01:intron 30.0%
CAGTTAAGGAAAACAAGAAA+TGG - Chr5:6779382-6779401 MsG0580024601.01.T01:intron 30.0%
CATATGGAGAAAATAGAGAA+GGG - Chr5:6779185-6779204 MsG0580024601.01.T01:intron 30.0%
CATTTGAAGGAAATTCAAGT+GGG - Chr5:6780485-6780504 MsG0580024601.01.T01:intron 30.0%
CTAAATCTCACATGTAAGTT+AGG - Chr5:6779109-6779128 MsG0580024601.01.T01:CDS 30.0%
GCAAATGGTGTTTACATATA+GGG - Chr5:6778654-6778673 MsG0580024601.01.T01:CDS 30.0%
TAAAAAAAAGGTCAATGGCT+TGG + Chr5:6778736-6778755 None:intergenic 30.0%
TATAACACAAGGTTTCATGA+TGG - Chr5:6781071-6781090 MsG0580024601.01.T01:intron 30.0%
TCACATGTAAGTTAGGAAAT+TGG - Chr5:6779116-6779135 MsG0580024601.01.T01:CDS 30.0%
TCATATGGAGAAAATAGAGA+AGG - Chr5:6779184-6779203 MsG0580024601.01.T01:intron 30.0%
TCATTTGAAGGAAATTCAAG+TGG - Chr5:6780484-6780503 MsG0580024601.01.T01:intron 30.0%
TGGTCCTATGAAGTATAATT+GGG - Chr5:6779611-6779630 MsG0580024601.01.T01:CDS 30.0%
TGGTTTACACAGACAAATTA+GGG - Chr5:6779983-6780002 MsG0580024601.01.T01:CDS 30.0%
TTGAAAAATCCAGTATCTTC+AGG + Chr5:6780849-6780868 None:intergenic 30.0%
! ATTTTCAACGAATCAATGTG+TGG + Chr5:6780268-6780287 None:intergenic 30.0%
! GATAACTTTTTATGGAGCAT+TGG + Chr5:6779245-6779264 None:intergenic 30.0%
! GATTTCTTCTGATAATGATG+GGG - Chr5:6778978-6778997 MsG0580024601.01.T01:intron 30.0%
! GTTATGTCTTTTCATCAATG+TGG - Chr5:6779690-6779709 MsG0580024601.01.T01:CDS 30.0%
!! ATTTTTCATGCTGCTTCATA+AGG - Chr5:6779279-6779298 MsG0580024601.01.T01:intron 30.0%
!! TGCAAGAGGAATACTTTTTA+GGG - Chr5:6780389-6780408 MsG0580024601.01.T01:intron 30.0%
!! TTGCAAGAGGAATACTTTTT+AGG - Chr5:6780388-6780407 MsG0580024601.01.T01:intron 30.0%
!! TTGTTGCGTGAATATTTTGA+AGG + Chr5:6779049-6779068 None:intergenic 30.0%
!! TTTTTGACTATCAAGCCTAA+AGG + Chr5:6778888-6778907 None:intergenic 30.0%
!!! TATGAAATATTTTGGTCGCT+CGG - Chr5:6778761-6778780 MsG0580024601.01.T01:CDS 30.0%
AAACACCAACTCTACAGTTA+AGG - Chr5:6779368-6779387 MsG0580024601.01.T01:intron 35.0%
ACTAAGACTTGATGCACATT+TGG - Chr5:6780432-6780451 MsG0580024601.01.T01:intron 35.0%
AGAATTCCAATGCTATGACA+AGG - Chr5:6780583-6780602 MsG0580024601.01.T01:intron 35.0%
ATGGAGATTTCTTCCTTGAT+TGG - Chr5:6780895-6780914 MsG0580024601.01.T01:intron 35.0%
ATGGTGTTTACATATAGGGA+CGG - Chr5:6778658-6778677 MsG0580024601.01.T01:CDS 35.0%
CATAGTAAGTTTCACCAACT+TGG - Chr5:6780140-6780159 MsG0580024601.01.T01:CDS 35.0%
CATATAAGGATAGTTGCAAG+AGG - Chr5:6780375-6780394 MsG0580024601.01.T01:intron 35.0%
CTAAATAGAGCCTAAATTGG+TGG + Chr5:6779777-6779796 None:intergenic 35.0%
CTGGTTTACACAGACAAATT+AGG - Chr5:6779982-6780001 MsG0580024601.01.T01:CDS 35.0%
GCTTCCCAATTATACTTCAT+AGG + Chr5:6779618-6779637 None:intergenic 35.0%
GGCAAATGGTGTTTACATAT+AGG - Chr5:6778653-6778672 MsG0580024601.01.T01:CDS 35.0%
GTTTATTTACTCAAGTACCC+TGG + Chr5:6779019-6779038 None:intergenic 35.0%
TAAACACCATTTGCCTCTAA+GGG + Chr5:6778648-6778667 None:intergenic 35.0%
TTTACACAGACAAATTAGGG+AGG - Chr5:6779986-6780005 MsG0580024601.01.T01:CDS 35.0%
TTTGCTAGCATTTGTGCTAT+TGG + Chr5:6781104-6781123 None:intergenic 35.0%
TTTGTACCTTGTCATAGCAT+TGG + Chr5:6780592-6780611 None:intergenic 35.0%
! AGCAATGAATGCTAGTTTGA+TGG - Chr5:6779524-6779543 MsG0580024601.01.T01:CDS 35.0%
! ATGTCTTTTCATCAATGTGG+TGG - Chr5:6779693-6779712 MsG0580024601.01.T01:CDS 35.0%
! GTTTTCCTTAACTGTAGAGT+TGG + Chr5:6779376-6779395 None:intergenic 35.0%
! TTGTATTGACCAGAATCATG+TGG + Chr5:6780819-6780838 None:intergenic 35.0%
! TTTTCAAAAGGGAAGGAACA+TGG - Chr5:6780862-6780881 MsG0580024601.01.T01:intron 35.0%
!! ACCAACTTGGTCTTCAATTT+TGG - Chr5:6780153-6780172 MsG0580024601.01.T01:CDS 35.0%
!! ACTGGATTTTTCAAAAGGGA+AGG - Chr5:6780855-6780874 MsG0580024601.01.T01:intron 35.0%
!! ATATGCTTTTGGCTGATACA+AGG + Chr5:6780956-6780975 None:intergenic 35.0%
!! CAACTTGGTCTTCAATTTTG+GGG - Chr5:6780155-6780174 MsG0580024601.01.T01:CDS 35.0%
!! CCAACTTGGTCTTCAATTTT+GGG - Chr5:6780154-6780173 MsG0580024601.01.T01:CDS 35.0%
!! TCAAGCAAACTTGTTGAACA+TGG - Chr5:6780921-6780940 MsG0580024601.01.T01:intron 35.0%
!! TCTAAGGGTGCTTACATATA+GGG + Chr5:6778633-6778652 None:intergenic 35.0%
!! TTTTTGTGGGTTAATGAAGC+AGG + Chr5:6778568-6778587 None:intergenic 35.0%
!!! TCTTCAATTTTGGGGTTACT+TGG - Chr5:6780163-6780182 MsG0580024601.01.T01:CDS 35.0%
!!! TTTTTATGGAGCATTGGAGA+TGG + Chr5:6779239-6779258 None:intergenic 35.0%
AAGGAAATTCAAGTGGGACT+AGG - Chr5:6780491-6780510 MsG0580024601.01.T01:intron 40.0%
AATCCCGAATACATCTCGTT+GGG - Chr5:6780012-6780031 MsG0580024601.01.T01:CDS 40.0%
AATGGCAACATCACAAACAC+CGG + Chr5:6779465-6779484 None:intergenic 40.0%
ACGGAAGCTTCTCATGTAAT+CGG + Chr5:6780088-6780107 None:intergenic 40.0%
ACTTGGAAGTTTCCAGGAAT+TGG - Chr5:6780560-6780579 MsG0580024601.01.T01:intron 40.0%
AGCAATTGGGAAGAAAGAGT+GGG - Chr5:6780782-6780801 MsG0580024601.01.T01:intron 40.0%
AGCACAAATGCTAGCAAACA+TGG - Chr5:6781106-6781125 MsG0580024601.01.T01:intron 40.0%
CATGCAACTGAATTAACTGC+AGG - Chr5:6781044-6781063 MsG0580024601.01.T01:intron 40.0%
CATGGGTGCTTGAAGAAATA+AGG - Chr5:6779947-6779966 MsG0580024601.01.T01:CDS 40.0%
CATTGGAATTCTCCAATTCC+TGG + Chr5:6780575-6780594 None:intergenic 40.0%
CCATTAGACACGGTAACAAT+GGG - Chr5:6779480-6779499 MsG0580024601.01.T01:intron 40.0%
CCCAAAATTGAAGACCAAGT+TGG + Chr5:6780157-6780176 None:intergenic 40.0%
CTATATGTAAGCACCCTTAG+AGG - Chr5:6778632-6778651 MsG0580024601.01.T01:CDS 40.0%
CTATCAAGCCTAAAGGATGA+AGG + Chr5:6778881-6778900 None:intergenic 40.0%
CTGCAGGTTACTATAACACA+AGG - Chr5:6781060-6781079 MsG0580024601.01.T01:intron 40.0%
GGAACATGGAACACAGAATA+TGG - Chr5:6780876-6780895 MsG0580024601.01.T01:intron 40.0%
GTAAACACCATTTGCCTCTA+AGG + Chr5:6778649-6778668 None:intergenic 40.0%
GTGCTCATTACCAAGTAGTT+TGG - Chr5:6778835-6778854 MsG0580024601.01.T01:CDS 40.0%
GTTCAGATGGTACAAAAGCA+TGG - Chr5:6779651-6779670 MsG0580024601.01.T01:CDS 40.0%
GTTTGCTTGAGTACCAATCA+AGG + Chr5:6780911-6780930 None:intergenic 40.0%
TAGCATACCTTTACCTCCAT+GGG - Chr5:6779930-6779949 MsG0580024601.01.T01:CDS 40.0%
TCCAAGTTCCATCAGTTTCA+GGG + Chr5:6780547-6780566 None:intergenic 40.0%
TGTGATGTTGCCATTAGACA+CGG - Chr5:6779470-6779489 MsG0580024601.01.T01:intron 40.0%
TGTTTACATATAGGGACGGA+GGG - Chr5:6778662-6778681 MsG0580024601.01.T01:CDS 40.0%
TTCCAAGTTCCATCAGTTTC+AGG + Chr5:6780548-6780567 None:intergenic 40.0%
TTTGGTCGCTTGGTCATTTA+GGG - Chr5:6778853-6778872 MsG0580024601.01.T01:CDS 40.0%
! AAGGAGTAATGGTTGATGCT+TGG - Chr5:6779568-6779587 MsG0580024601.01.T01:CDS 40.0%
! AGTAATGGTTGATGCTTGGT+GGG - Chr5:6779572-6779591 MsG0580024601.01.T01:CDS 40.0%
! CATCAATGTGGTGGAAATGT+TGG - Chr5:6779702-6779721 MsG0580024601.01.T01:CDS 40.0%
! CTTATTTCTTCAAGCACCCA+TGG + Chr5:6779949-6779968 None:intergenic 40.0%
! TGGGGTTTGGTTGAAAAAGA+TGG - Chr5:6779591-6779610 MsG0580024601.01.T01:CDS 40.0%
! TTATGCTGAGCTTGTTCAGA+TGG - Chr5:6779638-6779657 MsG0580024601.01.T01:CDS 40.0%
!! CTCTAAGGGTGCTTACATAT+AGG + Chr5:6778634-6778653 None:intergenic 40.0%
!! TGCTGATTCGAATAGAGTAC+CGG - Chr5:6779443-6779462 MsG0580024601.01.T01:intron 40.0%
AAGAAAGAGTGGGGAACAAG+TGG - Chr5:6780792-6780811 MsG0580024601.01.T01:intron 45.0%
AAGCATCAGCTGCAGCAATT+GGG - Chr5:6780769-6780788 MsG0580024601.01.T01:intron 45.0%
AATAAGGAAGAACCCTGAGC+TGG - Chr5:6779963-6779982 MsG0580024601.01.T01:CDS 45.0%
ACAAGTGGACCACATGATTC+TGG - Chr5:6780807-6780826 MsG0580024601.01.T01:intron 45.0%
ACACAGACAAATTAGGGAGG+AGG - Chr5:6779989-6780008 MsG0580024601.01.T01:CDS 45.0%
ACAGCCCAACGAGATGTATT+CGG + Chr5:6780019-6780038 None:intergenic 45.0%
ACCCTGAAACTGATGGAACT+TGG - Chr5:6780543-6780562 MsG0580024601.01.T01:intron 45.0%
ATTTCTTCAAGCACCCATGG+AGG + Chr5:6779946-6779965 None:intergenic 45.0%
CAGCAATTGGGAAGAAAGAG+TGG - Chr5:6780781-6780800 MsG0580024601.01.T01:intron 45.0%
CCATCAGTTTCAGGGTAAGA+TGG + Chr5:6780539-6780558 None:intergenic 45.0%
CCATCTTACCCTGAAACTGA+TGG - Chr5:6780536-6780555 MsG0580024601.01.T01:intron 45.0%
CCCATTGTTACCGTGTCTAA+TGG + Chr5:6779483-6779502 None:intergenic 45.0%
CTAGCATACCTTTACCTCCA+TGG - Chr5:6779929-6779948 MsG0580024601.01.T01:CDS 45.0%
CTCTATTCGAATCAGCATCG+TGG + Chr5:6779440-6779459 None:intergenic 45.0%
GAATCCCGAATACATCTCGT+TGG - Chr5:6780011-6780030 MsG0580024601.01.T01:CDS 45.0%
GATGGAACTTGGAAGTTTCC+AGG - Chr5:6780554-6780573 MsG0580024601.01.T01:intron 45.0%
GCAATTGGGAAGAAAGAGTG+GGG - Chr5:6780783-6780802 MsG0580024601.01.T01:intron 45.0%
GCCATTAGACACGGTAACAA+TGG - Chr5:6779479-6779498 MsG0580024601.01.T01:intron 45.0%
GTGTTTACATATAGGGACGG+AGG - Chr5:6778661-6778680 MsG0580024601.01.T01:CDS 45.0%
GTTTGGTCGCTTGGTCATTT+AGG - Chr5:6778852-6778871 MsG0580024601.01.T01:CDS 45.0%
TAAGCACCCTTAGAGGCAAA+TGG - Chr5:6778639-6778658 MsG0580024601.01.T01:CDS 45.0%
TAATCGGAGTAGACCTGAAG+TGG + Chr5:6780072-6780091 None:intergenic 45.0%
TACCAAGTAGTTTGGTCGCT+TGG - Chr5:6778843-6778862 MsG0580024601.01.T01:CDS 45.0%
TCGTGGTTATGAGCAATCGA+TGG + Chr5:6779423-6779442 None:intergenic 45.0%
TGCTGGAGTTGAAGGAGTAA+TGG - Chr5:6779557-6779576 MsG0580024601.01.T01:CDS 45.0%
TGCTTACATATAGGGACGGA+GGG + Chr5:6778625-6778644 None:intergenic 45.0%
TGTCTGTGTAAACCAGCTCA+GGG + Chr5:6779978-6779997 None:intergenic 45.0%
TTAGACACGGTAACAATGGG+AGG - Chr5:6779483-6779502 MsG0580024601.01.T01:intron 45.0%
TTGTCTGTGTAAACCAGCTC+AGG + Chr5:6779979-6779998 None:intergenic 45.0%
! AGGGTGCTTACATATAGGGA+CGG + Chr5:6778629-6778648 None:intergenic 45.0%
! GAGTAATGGTTGATGCTTGG+TGG - Chr5:6779571-6779590 MsG0580024601.01.T01:CDS 45.0%
! GTAATGGTTGATGCTTGGTG+GGG - Chr5:6779573-6779592 MsG0580024601.01.T01:CDS 45.0%
! TTGATGGCATTGAAGAGTGC+TGG - Chr5:6779540-6779559 MsG0580024601.01.T01:CDS 45.0%
!! GAAATGTTGGTGACTCTTGC+AGG - Chr5:6779715-6779734 MsG0580024601.01.T01:intron 45.0%
!! TTGAAGAGTGCTGGAGTTGA+AGG - Chr5:6779549-6779568 MsG0580024601.01.T01:CDS 45.0%
AAGTGGGACTAGGTCCATGT+GGG - Chr5:6780501-6780520 MsG0580024601.01.T01:intron 50.0%
AGCTGGAAGAACTCCACTTC+AGG - Chr5:6780056-6780075 MsG0580024601.01.T01:CDS 50.0%
AGTGAGTGACGCTTACCACT+TGG - Chr5:6778519-6778538 MsG0580024601.01.T01:CDS 50.0%
CAGCCCAACGAGATGTATTC+GGG + Chr5:6780018-6780037 None:intergenic 50.0%
GACCAAGCGACCAAACTACT+TGG + Chr5:6778848-6778867 None:intergenic 50.0%
GATTCAGTGCCTGTTCTAGC+TGG - Chr5:6780039-6780058 MsG0580024601.01.T01:CDS 50.0%
GGAGTTCTTCCAGCTAGAAC+AGG + Chr5:6780051-6780070 None:intergenic 50.0%
GGATATCTCAACTCCCCACA+TGG + Chr5:6780518-6780537 None:intergenic 50.0%
GTGCTTACATATAGGGACGG+AGG + Chr5:6778626-6778645 None:intergenic 50.0%
TCAAGCACCCATGGAGGTAA+AGG + Chr5:6779940-6779959 None:intergenic 50.0%
! GAAGCATCAGCTGCAGCAAT+TGG - Chr5:6780768-6780787 MsG0580024601.01.T01:intron 50.0%
! TTAGGGCGCCTTCATCCTTT+AGG - Chr5:6778870-6778889 MsG0580024601.01.T01:CDS 50.0%
!! GGCTAGCTTGATCAGATCCA+GGG - Chr5:6778999-6779018 MsG0580024601.01.T01:intron 50.0%
!! GTTGGTGACTCTTGCAGGTA+TGG - Chr5:6779720-6779739 MsG0580024601.01.T01:intron 50.0%
AGTGGGACTAGGTCCATGTG+GGG - Chr5:6780502-6780521 MsG0580024601.01.T01:intron 55.0%
CAAGTGGGACTAGGTCCATG+TGG - Chr5:6780500-6780519 MsG0580024601.01.T01:intron 55.0%
! GGTTGATGCTTGGTGGGGTT+TGG - Chr5:6779578-6779597 MsG0580024601.01.T01:CDS 55.0%
! GTCAATGGCTTGGGTTGTCG+TGG + Chr5:6778726-6778745 None:intergenic 55.0%
! TTCAGAGTGCCTTCACCCTC+TGG - Chr5:6778787-6778806 MsG0580024601.01.T01:CDS 55.0%
!! GGGCTAGCTTGATCAGATCC+AGG - Chr5:6778998-6779017 MsG0580024601.01.T01:intron 55.0%
! GCCTTCACCCTCTGGCCTTT+GGG - Chr5:6778795-6778814 MsG0580024601.01.T01:CDS 60.0%
! TGCCTTCACCCTCTGGCCTT+TGG - Chr5:6778794-6778813 MsG0580024601.01.T01:CDS 60.0%
CCTTTGGGCTCGACGCTCTG+GGG - Chr5:6778810-6778829 MsG0580024601.01.T01:CDS 65.0%
CGTCGAGCCCAAAGGCCAGA+GGG + Chr5:6778805-6778824 None:intergenic 65.0%
GCCCAAAGGCCAGAGGGTGA+AGG + Chr5:6778799-6778818 None:intergenic 65.0%
GCCTTTGGGCTCGACGCTCT+GGG - Chr5:6778809-6778828 MsG0580024601.01.T01:CDS 65.0%
GCGTCGAGCCCAAAGGCCAG+AGG + Chr5:6778806-6778825 None:intergenic 70.0%
GGCCTTTGGGCTCGACGCTC+TGG - Chr5:6778808-6778827 MsG0580024601.01.T01:CDS 70.0%
!! CCCCAGAGCGTCGAGCCCAA+AGG + Chr5:6778813-6778832 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr5 gene 6778516 6781139 6778516 ID=MsG0580024601.01;Name=MsG0580024601.01
Chr5 mRNA 6778516 6781139 6778516 ID=MsG0580024601.01.T01;Parent=MsG0580024601.01;Name=MsG0580024601.01.T01;_AED=0.08;_eAED=0.08;_QI=0|0.75|0.6|0.8|0.75|0.8|5|0|383
Chr5 exon 6778516 6778905 6778516 ID=MsG0580024601.01.T01:exon:29206;Parent=MsG0580024601.01.T01
Chr5 exon 6779051 6779161 6779051 ID=MsG0580024601.01.T01:exon:29205;Parent=MsG0580024601.01.T01
Chr5 exon 6779512 6779722 6779512 ID=MsG0580024601.01.T01:exon:29204;Parent=MsG0580024601.01.T01
Chr5 exon 6779919 6780354 6779919 ID=MsG0580024601.01.T01:exon:29203;Parent=MsG0580024601.01.T01
Chr5 exon 6781136 6781139 6781136 ID=MsG0580024601.01.T01:exon:29202;Parent=MsG0580024601.01.T01
Chr5 CDS 6781136 6781139 6781136 ID=MsG0580024601.01.T01:cds;Parent=MsG0580024601.01.T01
Chr5 CDS 6779919 6780354 6779919 ID=MsG0580024601.01.T01:cds;Parent=MsG0580024601.01.T01
Chr5 CDS 6779512 6779722 6779512 ID=MsG0580024601.01.T01:cds;Parent=MsG0580024601.01.T01
Chr5 CDS 6779051 6779161 6779051 ID=MsG0580024601.01.T01:cds;Parent=MsG0580024601.01.T01
Chr5 CDS 6778516 6778905 6778516 ID=MsG0580024601.01.T01:cds;Parent=MsG0580024601.01.T01
Gene Sequence

>MsG0580024601.01.T01

ATGAGAAGAAAATATAAACAAACATTCTTAGTTAAGGAAAGAGTTCAATGCAAGAAACATTTCACAAAGGAAAACACCAACTCTACAGTTAAGGAAAACAAGAAATGGGAGAAGATTCACGTGCCATCGATTGCTCATAACCACGATGCTGATTCGAATAGAGTACCGGTGTTTGTGATGTTGCCATTAGACACGGTAACAATGGGAGGAAAATTGAATAAAGCAAGAGCAATGAATGCTAGTTTGATGGCATTGAAGAGTGCTGGAGTTGAAGGAGTAATGGTTGATGCTTGGTGGGGTTTGGTTGAAAAAGATGGTCCTATGAAGTATAATTGGGAAGCTTATGCTGAGCTTGTTCAGATGGTACAAAAGCATGGTTTGAAGCTTCAAATTGTTATGTCTTTTCATCAATGTGGTGGAAATGTTGGTGACTCTTGCAGCATACCTTTACCTCCATGGGTGCTTGAAGAAATAAGGAAGAACCCTGAGCTGGTTTACACAGACAAATTAGGGAGGAGGAATCCCGAATACATCTCGTTGGGCTGTGATTCAGTGCCTGTTCTAGCTGGAAGAACTCCACTTCAGGTCTACTCCGATTACATGAGAAGCTTCCGTGATAGATTCACAGATTATTTGGGCAATGTCATCATAGAAATTCAAGTGGGACTAGGTCCATGTGGGGAGTTGAGATATCCATCTTACCCTGAAACTGATGGAACTTGGAAGTTTCCAGGAATTGGAGAATTCCAATGCTATGACAAGTATATGAGATCTTCTTTGGAAGCATCAGCTGCAGCAATTGGGAAGAAAGAGTGGGGAACAAGTGGACCACATGATTCTGGTCAATACAATCAATATCCTGAAGATACTGGATTTTTCAAAAGGGAAGGAACATGGAACACAGAATATGGAGATTTCTTCCTTGATTGGTACTCAAGCAAACTTGTTGAACATGGTGAGAAAATCCTTGTATCAGCCAAAAGCATATTTCAAACAAGTGGAGTGAAACTATCAGCAAAAATAGCTGGAATTCATTGGCATTACAATGCAAGATCACATGCAACTGAATTAACTGCAGGTTACTATAACACAAGGTTTCATGATGGTTATATACCAATAGCACAAATGCTAGCAAACATGGAGTTATACTAA

Protein sequence

>MsG0580024601.01.T01

MRRKYKQTFLVKERVQCKKHFTKENTNSTVKENKKWEKIHVPSIAHNHDADSNRVPVFVMLPLDTVTMGGKLNKARAMNASLMALKSAGVEGVMVDAWWGLVEKDGPMKYNWEAYAELVQMVQKHGLKLQIVMSFHQCGGNVGDSCSIPLPPWVLEEIRKNPELVYTDKLGRRNPEYISLGCDSVPVLAGRTPLQVYSDYMRSFRDRFTDYLGNVIIEIQVGLGPCGELRYPSYPETDGTWKFPGIGEFQCYDKYMRSSLEASAAAIGKKEWGTSGPHDSGQYNQYPEDTGFFKREGTWNTEYGDFFLDWYSSKLVEHGEKILVSAKSIFQTSGVKLSAKIAGIHWHYNARSHATELTAGYYNTRFHDGYIPIAQMLANMELY*