AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480023605.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023605.01.T01 MTR_8g096900 79.787 94 19 0 73 166 28 121 6.79e-49 158
MsG0480023605.01.T01 MTR_2g013980 87.912 91 11 0 1 91 1093 1183 1.20e-40 145
MsG0480023605.01.T01 MTR_5g037350 81.707 82 10 1 20 96 484 565 6.94e-40 142
MsG0480023605.01.T01 MTR_3g102480 90.323 62 6 0 1 62 3 64 1.71e-34 117
MsG0480023605.01.T01 MTR_5g024920 67.816 87 26 1 5 91 1 85 2.10e-31 119
MsG0480023605.01.T01 MTR_5g010635 64.103 78 28 0 89 166 20 97 2.05e-29 108
MsG0480023605.01.T01 MTR_8g096920 64.865 74 25 1 92 164 18 91 3.65e-28 103
MsG0480023605.01.T01 MTR_8g096910 60.759 79 30 1 87 164 16 94 1.26e-27 102
MsG0480023605.01.T01 MTR_5g010640 54.217 83 38 0 82 164 15 97 1.27e-26 100
MsG0480023605.01.T01 MTR_1g090220 60.638 94 25 1 1 82 84 177 3.37e-25 95.9
MsG0480023605.01.T01 MTR_7g025530 69.048 84 25 1 8 91 240 322 4.50e-25 100
MsG0480023605.01.T01 MTR_1g021865 55.102 98 35 3 1 98 110 198 6.06e-24 93.2
MsG0480023605.01.T01 MTR_3g467660 71.429 63 18 0 21 83 5 67 1.00e-23 95.1
MsG0480023605.01.T01 MTR_6g086840 83.673 49 8 0 44 92 9 57 2.82e-21 84.3
MsG0480023605.01.T01 MTR_5g034890 50.000 84 17 1 8 91 166 224 5.72e-19 83.2
MsG0480023605.01.T01 MTR_3g073740 89.189 37 4 0 48 84 10 46 6.57e-14 64.3
MsG0480023605.01.T01 MTR_5g059200 46.753 77 35 2 92 163 28 103 8.26e-14 67.8
MsG0480023605.01.T01 MTR_5g031630 83.784 37 6 0 51 87 199 235 1.25e-13 67.8
MsG0480023605.01.T01 MTR_1g021945 46.250 80 34 2 92 163 25 103 2.38e-13 65.9
MsG0480023605.01.T01 MTR_8g107140 45.333 75 32 3 97 163 31 104 1.19e-12 63.9
MsG0480023605.01.T01 MTR_6g079580 36.170 94 48 3 78 163 10 99 4.05e-12 62.4
MsG0480023605.01.T01 MTR_3g111620 43.590 78 35 2 95 164 29 105 5.86e-12 62.0
MsG0480023605.01.T01 MTR_8g075510 45.122 82 30 4 92 163 30 106 6.29e-12 62.4
MsG0480023605.01.T01 MTR_8g036215 42.500 80 37 2 92 163 19 97 6.84e-12 62.0
MsG0480023605.01.T01 MTR_3g011720 68.889 45 13 1 21 65 31 74 1.04e-11 57.8
MsG0480023605.01.T01 MTR_8g075510 44.578 83 31 4 92 164 30 107 1.10e-11 61.2
MsG0480023605.01.T01 MTR_7g062610 41.772 79 37 2 93 163 23 100 2.71e-11 60.5
MsG0480023605.01.T01 MTR_4g063630 38.372 86 44 2 87 164 23 107 3.66e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023605.01.T01 AT4G11650 65.278 72 25 0 92 163 22 93 5.10e-27 102
MsG0480023605.01.T01 AT5G24620 50.000 82 32 2 90 163 77 157 3.30e-18 80.9
MsG0480023605.01.T01 AT5G24620 50.000 82 32 2 90 163 98 178 3.82e-18 80.9
MsG0480023605.01.T01 AT5G24620 50.000 82 32 2 90 163 22 102 4.31e-18 80.5
MsG0480023605.01.T01 AT1G75040 52.632 76 28 2 91 159 22 96 2.89e-16 73.9
MsG0480023605.01.T01 AT1G77700 44.304 79 38 2 92 165 60 137 4.93e-15 71.6
MsG0480023605.01.T01 AT1G77700 44.304 79 38 2 92 165 88 165 9.61e-15 70.9
MsG0480023605.01.T01 AT1G77700 44.304 79 38 2 92 165 60 137 1.79e-14 69.7
MsG0480023605.01.T01 AT1G75050 45.122 82 37 2 90 164 22 102 4.78e-14 67.8
MsG0480023605.01.T01 AT1G19320 45.455 77 34 2 94 163 27 102 2.78e-13 65.9
MsG0480023605.01.T01 AT1G75030 44.304 79 36 2 92 163 23 100 2.64e-12 63.2
MsG0480023605.01.T01 AT5G38280 41.463 82 38 3 91 163 23 103 3.11e-12 63.9
MsG0480023605.01.T01 AT5G38280 41.463 82 38 3 91 163 23 103 3.12e-12 63.9
MsG0480023605.01.T01 AT1G73620 42.500 80 37 2 92 163 41 119 3.77e-11 60.1

Find 57 sgRNAs with CRISPR-Local

Find 131 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTCTATCAAAGACCATATT+TGG 0.156995 4:+87566233 None:intergenic
GAACCACATCGGCCCGTATT+TGG 0.159384 4:-87564758 MsG0480023605.01.T01:CDS
TAGAAAAGTTTGTAGAAAAT+AGG 0.232249 4:-87566412 MsG0480023605.01.T01:CDS
GGTTGTAGCTTCGACGGTTC+AGG 0.298469 4:-87564726 MsG0480023605.01.T01:CDS
GAAAATAGGCTTAGATGGTT+TGG 0.322680 4:-87566398 MsG0480023605.01.T01:CDS
TTGTAGAAAATAGGCTTAGA+TGG 0.356442 4:-87566403 MsG0480023605.01.T01:CDS
AACCACATCGGCCCGTATTT+GGG 0.357300 4:-87564757 MsG0480023605.01.T01:CDS
AACCATTAGAAAAGATTTAG+AGG 0.369865 4:-87566270 MsG0480023605.01.T01:CDS
GCTGCGGCCCATACAGTGTT+AGG 0.372800 4:+87564843 None:intergenic
GTCGAAGCTACAACCGGTTC+TGG 0.376293 4:+87564734 None:intergenic
AACCGGTTCTGGCCCAAATA+CGG 0.380313 4:+87564745 None:intergenic
CAATGAGTTGGATCCAAATA+TGG 0.382094 4:-87566246 MsG0480023605.01.T01:intron
ACAATTGCCCTAACACTGTA+TGG 0.387614 4:-87564851 MsG0480023605.01.T01:CDS
TCTTCTTACCACGGCGTCTA+CGG 0.406616 4:+87566358 None:intergenic
GCCCGTATTTGGGCCAGAAC+CGG 0.409145 4:-87564747 MsG0480023605.01.T01:CDS
AGATCAAATGGAGGAGAGTC+AGG 0.409734 4:-87566333 MsG0480023605.01.T01:CDS
AGACTAGACATGATAGGATT+AGG 0.412117 4:-87566475 MsG0480023605.01.T01:CDS
TACCGCCGCAGTCACCGGTT+TGG 0.450783 4:+87564691 None:intergenic
AGTCAGGTTAAAAGAGGTAG+AGG 0.455911 4:-87566317 MsG0480023605.01.T01:CDS
GGTTCCTGCAGCTACGTTGA+TGG 0.457014 4:+87564776 None:intergenic
ACCGGTTCTGGCCCAAATAC+GGG 0.461130 4:+87564746 None:intergenic
CAGCTTACCGCCGCAGTCAC+CGG 0.467832 4:+87564686 None:intergenic
GTATGGGCCGCAGCTGTACC+AGG 0.485418 4:-87564834 MsG0480023605.01.T01:CDS
GGTAAGAAGAGTAGATCAAA+TGG 0.497053 4:-87566345 MsG0480023605.01.T01:CDS
TTTAGTTGCTTACCGCCGCC+TGG 0.498951 4:+87564816 None:intergenic
AGATTTAGAGGTCAATGAGT+TGG 0.506040 4:-87566258 MsG0480023605.01.T01:CDS
CTTCTTACCACGGCGTCTAC+GGG 0.506246 4:+87566359 None:intergenic
AGCTTCGACGGTTCAGGGAA+CGG 0.509735 4:-87564720 MsG0480023605.01.T01:CDS
GAGGAGAGTCAGGTTAAAAG+AGG 0.517218 4:-87566323 MsG0480023605.01.T01:CDS
GCCGCAGCTGTACCAGGCGG+CGG 0.526493 4:-87564828 MsG0480023605.01.T01:CDS
AAGCTGAACTGCCAAGCTTA+CGG 0.527083 4:-87564669 None:intergenic
TTGGAGCTGTACCGTAAGCT+TGG 0.532816 4:+87564658 None:intergenic
GGGAACGGTCGATGCCAAAC+CGG 0.534308 4:-87564705 MsG0480023605.01.T01:CDS
GTTGTAGCTTCGACGGTTCA+GGG 0.543711 4:-87564725 MsG0480023605.01.T01:CDS
TGGACCATCAACGTAGCTGC+AGG 0.546070 4:-87564780 MsG0480023605.01.T01:CDS
CTGCGGCCCATACAGTGTTA+GGG 0.547508 4:+87564844 None:intergenic
AAGAAGAGTAGATCAAATGG+AGG 0.556047 4:-87566342 MsG0480023605.01.T01:CDS
TGAACCGTCGAAGCTACAAC+CGG 0.559589 4:+87564728 None:intergenic
TGACATCATTAGAGAGAGAG+TGG 0.565974 4:-87566450 MsG0480023605.01.T01:CDS
AGGATGTTGCGTTGGATGAG+TGG 0.569707 4:-87566500 MsG0480023605.01.T01:CDS
CGGAGATGAGGATGTTGCGT+TGG 0.577517 4:-87566508 None:intergenic
GACATCATTAGAGAGAGAGT+GGG 0.583558 4:-87566449 MsG0480023605.01.T01:CDS
TTGATCTACTCTTCTTACCA+CGG 0.584343 4:+87566349 None:intergenic
GTGGTAAGACTAGACATGAT+AGG 0.588491 4:-87566481 MsG0480023605.01.T01:CDS
GGCCCAAATACGGGCCGATG+TGG 0.589446 4:+87564755 None:intergenic
CAATTGCCCTAACACTGTAT+GGG 0.589746 4:-87564850 MsG0480023605.01.T01:CDS
CGATGCCAAACCGGTGACTG+CGG 0.617634 4:-87564696 MsG0480023605.01.T01:CDS
AGAACCGGTTGTAGCTTCGA+CGG 0.620579 4:-87564732 MsG0480023605.01.T01:CDS
GGTTTGGACATGTAGAGAGA+AGG 0.621457 4:-87566382 MsG0480023605.01.T01:CDS
ACATCATTAGAGAGAGAGTG+GGG 0.637541 4:-87566448 MsG0480023605.01.T01:CDS
TGCCAAACCGGTGACTGCGG+CGG 0.639305 4:-87564693 MsG0480023605.01.T01:CDS
ACCGCCGCCTGGTACAGCTG+CGG 0.644365 4:+87564827 None:intergenic
CGTAGCTGCAGGAACCACAT+CGG 0.673819 4:-87564769 MsG0480023605.01.T01:CDS
GAGAAGGCCCGTAGACGCCG+TGG 0.683285 4:-87566366 MsG0480023605.01.T01:CDS
CATCATTAGAGAGAGAGTGG+GGG 0.691334 4:-87566447 MsG0480023605.01.T01:CDS
TGGGCCGCAGCTGTACCAGG+CGG 0.694399 4:-87564831 MsG0480023605.01.T01:CDS
GGCGGTAAGCAACTAAACCG+CGG 0.701327 4:-87564810 MsG0480023605.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAACAAAAAAATTAATAG+GGG - Chr4:87565470-87565489 MsG0480023605.01.T01:intron 10.0%
!! TACTAAATATATGTTATAAA+TGG - Chr4:87565708-87565727 MsG0480023605.01.T01:intron 10.0%
!!! ATTTTTTTGTTTTTATCAAA+AGG + Chr4:87565464-87565483 None:intergenic 10.0%
!!! TTTTTTTGTTTTTATCAAAA+GGG + Chr4:87565463-87565482 None:intergenic 10.0%
!! AACTTTAACTAAAAAACAAA+GGG + Chr4:87565989-87566008 None:intergenic 15.0%
!! TAACTTTAACTAAAAAACAA+AGG + Chr4:87565990-87566009 None:intergenic 15.0%
!! AAATTTGCAATCAAAATTGA+TGG - Chr4:87565665-87565684 MsG0480023605.01.T01:intron 20.0%
!! ACTTTAACTAAAAAACAAAG+GGG + Chr4:87565988-87566007 None:intergenic 20.0%
!! AGTTAAAGTTAATAGAAAAC+AGG - Chr4:87565999-87566018 MsG0480023605.01.T01:intron 20.0%
!! CAAAACAAACTTTATACTAA+TGG - Chr4:87565388-87565407 MsG0480023605.01.T01:intron 20.0%
!! GTTATTTAATTAATACTCCA+AGG + Chr4:87565299-87565318 None:intergenic 20.0%
!! TAGAAAAGTTTGTAGAAAAT+AGG - Chr4:87564756-87564775 MsG0480023605.01.T01:CDS 20.0%
!! TCAAAAAAAAAATAGTCAAG+AGG - Chr4:87565208-87565227 MsG0480023605.01.T01:intron 20.0%
!!! AATTGTATTGATATCGTAAA+AGG - Chr4:87565149-87565168 MsG0480023605.01.T01:intron 20.0%
!!! CTTGACTATTTTTTTTTTGA+GGG + Chr4:87565208-87565227 None:intergenic 20.0%
!!! TCTTGACTATTTTTTTTTTG+AGG + Chr4:87565209-87565228 None:intergenic 20.0%
!!! TCTTTTTATTATAAAGACAG+AGG + Chr4:87565260-87565279 None:intergenic 20.0%
! AACCATTAGAAAAGATTTAG+AGG - Chr4:87564898-87564917 MsG0480023605.01.T01:intron 25.0%
! CTTTAACTAAAAAACAAAGG+GGG + Chr4:87565987-87566006 None:intergenic 25.0%
!! AGTCGTAAAATTCTGAATTT+TGG - Chr4:87565844-87565863 MsG0480023605.01.T01:intron 25.0%
!! GTCGTAAAATTCTGAATTTT+GGG - Chr4:87565845-87565864 MsG0480023605.01.T01:intron 25.0%
!! GTTTCTCTAATAGTTTTCTT+AGG + Chr4:87564881-87564900 None:intergenic 25.0%
!! TCTACAAACTTTTCTACTAT+AGG + Chr4:87564752-87564771 None:intergenic 25.0%
!! TTTTAATATGGAAATTGTGG+TGG + Chr4:87565947-87565966 None:intergenic 25.0%
!!! CTGAATTTTGGGATTTAAAT+GGG - Chr4:87565856-87565875 MsG0480023605.01.T01:intron 25.0%
!!! GTTGTTGTTGATGATTTTAA+TGG - Chr4:87565021-87565040 MsG0480023605.01.T01:intron 25.0%
!!! TAAAGCAAAGGGTTTTAATA+TGG + Chr4:87565959-87565978 None:intergenic 25.0%
!!! TCTGAATTTTGGGATTTAAA+TGG - Chr4:87565855-87565874 MsG0480023605.01.T01:intron 25.0%
!!! TTTTGTTTTTGTGAGAAAGT+GGG + Chr4:87566189-87566208 None:intergenic 25.0%
ACCGTTTCAATAATGTTCTA+TGG - Chr4:87566139-87566158 MsG0480023605.01.T01:intron 30.0%
ATAGAACATTATTGAAACGG+TGG + Chr4:87566140-87566159 None:intergenic 30.0%
ATTCCTTAATCATTGTCACT+AGG - Chr4:87565411-87565430 MsG0480023605.01.T01:intron 30.0%
GCCATAGAACATTATTGAAA+CGG + Chr4:87566143-87566162 None:intergenic 30.0%
GTTCTATCAAAGACCATATT+TGG + Chr4:87564938-87564957 None:intergenic 30.0%
TCTTTGATAGAACATTATGG+CGG - Chr4:87564945-87564964 MsG0480023605.01.T01:intron 30.0%
TGGTCTTTGATAGAACATTA+TGG - Chr4:87564942-87564961 MsG0480023605.01.T01:intron 30.0%
TTCCTTAATCATTGTCACTA+GGG - Chr4:87565412-87565431 MsG0480023605.01.T01:intron 30.0%
TTCTTTGATTATAGGACCAT+AGG + Chr4:87566037-87566056 None:intergenic 30.0%
TTGTAGAAAATAGGCTTAGA+TGG - Chr4:87564765-87564784 MsG0480023605.01.T01:CDS 30.0%
! GACCTCTAAATCTTTTCTAA+TGG + Chr4:87564903-87564922 None:intergenic 30.0%
!! AGAGGAATTCTATTTTGAGA+CGG - Chr4:87565226-87565245 MsG0480023605.01.T01:intron 30.0%
!! GGGTTTTAATATGGAAATTG+TGG + Chr4:87565950-87565969 None:intergenic 30.0%
!!! GTTTTGTTTTTGTGAGAAAG+TGG + Chr4:87566190-87566209 None:intergenic 30.0%
AAGAAGAGTAGATCAAATGG+AGG - Chr4:87564826-87564845 MsG0480023605.01.T01:CDS 35.0%
ACAATAGATTTGAGTCGTTG+AGG - Chr4:87565813-87565832 MsG0480023605.01.T01:intron 35.0%
ACGGCATCTTCTTTGATTAT+AGG + Chr4:87566045-87566064 None:intergenic 35.0%
AGAATACTAATGAGTGTCCT+TGG - Chr4:87565279-87565298 MsG0480023605.01.T01:intron 35.0%
AGACTAGACATGATAGGATT+AGG - Chr4:87564693-87564712 MsG0480023605.01.T01:CDS 35.0%
AGATTTAGAGGTCAATGAGT+TGG - Chr4:87564910-87564929 MsG0480023605.01.T01:intron 35.0%
CAATAGATTTGAGTCGTTGA+GGG - Chr4:87565814-87565833 MsG0480023605.01.T01:intron 35.0%
GAAAATAGGCTTAGATGGTT+TGG - Chr4:87564770-87564789 MsG0480023605.01.T01:CDS 35.0%
GGTAAGAAGAGTAGATCAAA+TGG - Chr4:87564823-87564842 MsG0480023605.01.T01:CDS 35.0%
TTGATCTACTCTTCTTACCA+CGG + Chr4:87564822-87564841 None:intergenic 35.0%
TTTGTCTTGCAGTCTATACA+CGG + Chr4:87566064-87566083 None:intergenic 35.0%
! AAAAATCGGGATTTTGCTTC+AGG - Chr4:87565546-87565565 MsG0480023605.01.T01:intron 35.0%
! CAATGAGTTGGATCCAAATA+TGG - Chr4:87564922-87564941 MsG0480023605.01.T01:intron 35.0%
! CTATGGCCTTTTATAAACTG+AGG - Chr4:87566156-87566175 MsG0480023605.01.T01:intron 35.0%
!! TTTACTTGCTCGTTTTTCGT+CGG - Chr4:87565907-87565926 MsG0480023605.01.T01:intron 35.0%
AAGGGGGTTACTTAAAGCAA+AGG + Chr4:87565971-87565990 None:intergenic 40.0%
ACAATTGCCCTAACACTGTA+TGG - Chr4:87566317-87566336 MsG0480023605.01.T01:CDS 40.0%
ACATCATTAGAGAGAGAGTG+GGG - Chr4:87564720-87564739 MsG0480023605.01.T01:CDS 40.0%
AGGGGGTTACTTAAAGCAAA+GGG + Chr4:87565970-87565989 None:intergenic 40.0%
AGTCAGGTTAAAAGAGGTAG+AGG - Chr4:87564851-87564870 MsG0480023605.01.T01:CDS 40.0%
CAATTGCCCTAACACTGTAT+GGG - Chr4:87566318-87566337 MsG0480023605.01.T01:CDS 40.0%
GACATCATTAGAGAGAGAGT+GGG - Chr4:87564719-87564738 MsG0480023605.01.T01:CDS 40.0%
GTGGTAAGACTAGACATGAT+AGG - Chr4:87564687-87564706 MsG0480023605.01.T01:CDS 40.0%
GTGGTGCCTCAGTTTATAAA+AGG + Chr4:87566165-87566184 None:intergenic 40.0%
GTTTAGTGTAAGTGACCTCA+CGG + Chr4:87565511-87565530 None:intergenic 40.0%
TCTCTCTTTCACCTATACAC+AGG - Chr4:87566273-87566292 MsG0480023605.01.T01:CDS 40.0%
TGACATCATTAGAGAGAGAG+TGG - Chr4:87564718-87564737 MsG0480023605.01.T01:CDS 40.0%
TGCCCTAGTGACAATGATTA+AGG + Chr4:87565417-87565436 None:intergenic 40.0%
! ATCCCGATTTTTGACAACCT+TGG + Chr4:87565538-87565557 None:intergenic 40.0%
! TCCCGATTTTTGACAACCTT+GGG + Chr4:87565537-87565556 None:intergenic 40.0%
! TTTTTGTGAGAAAGTGGGAG+TGG + Chr4:87566184-87566203 None:intergenic 40.0%
AAATTACACTGACCTCCGTG+AGG - Chr4:87565493-87565512 MsG0480023605.01.T01:intron 45.0%
AACGCCTTATCCCACTAAGT+GGG + Chr4:87564992-87565011 None:intergenic 45.0%
AACTAAACCGCGGCGAAAAA+TGG - Chr4:87566368-87566387 MsG0480023605.01.T01:CDS 45.0%
ACTTACACTAAACTCCCCCA+AGG - Chr4:87565518-87565537 MsG0480023605.01.T01:intron 45.0%
AGATCAAATGGAGGAGAGTC+AGG - Chr4:87564835-87564854 MsG0480023605.01.T01:CDS 45.0%
CAGGTGCGATATTACTCCTA+TGG - Chr4:87566018-87566037 MsG0480023605.01.T01:intron 45.0%
CATCATTAGAGAGAGAGTGG+GGG - Chr4:87564721-87564740 MsG0480023605.01.T01:CDS 45.0%
CCCCAAGGTTGTCAAAAATC+GGG - Chr4:87565533-87565552 MsG0480023605.01.T01:intron 45.0%
CCCCCAAGGTTGTCAAAAAT+CGG - Chr4:87565532-87565551 MsG0480023605.01.T01:intron 45.0%
GAATGTTGCTGCCTGTGTAT+AGG + Chr4:87566287-87566306 None:intergenic 45.0%
GAGGAGAGTCAGGTTAAAAG+AGG - Chr4:87564845-87564864 MsG0480023605.01.T01:CDS 45.0%
GGTTTGGACATGTAGAGAGA+AGG - Chr4:87564786-87564805 MsG0480023605.01.T01:CDS 45.0%
! CCCGATTTTTGACAACCTTG+GGG + Chr4:87565536-87565555 None:intergenic 45.0%
! CCGATTTTTGACAACCTTGG+GGG + Chr4:87565535-87565554 None:intergenic 45.0%
!!! GGGATTTTGCTTCAGGTTGA+AGG - Chr4:87565553-87565572 MsG0480023605.01.T01:intron 45.0%
!! ATAAAAACAAAAAAATTAAT+AGG - Chr4:87565468-87565487 MsG0480023605.01.T01:intron 5.0%
!! TAAAAACAAAAAAATTAATA+GGG - Chr4:87565469-87565488 MsG0480023605.01.T01:intron 5.0%
AACCACATCGGCCCGTATTT+GGG - Chr4:87566411-87566430 MsG0480023605.01.T01:CDS 50.0%
ACGCCTTATCCCACTAAGTG+GGG + Chr4:87564991-87565010 None:intergenic 50.0%
AGAACCGGTTGTAGCTTCGA+CGG - Chr4:87566436-87566455 MsG0480023605.01.T01:CDS 50.0%
CAACGCCTTATCCCACTAAG+TGG + Chr4:87564993-87565012 None:intergenic 50.0%
CTTATCCCACTAAGTGGGGT+CGG + Chr4:87564987-87565006 None:intergenic 50.0%
GTTGTAGCTTCGACGGTTCA+GGG - Chr4:87566443-87566462 MsG0480023605.01.T01:CDS 50.0%
TAGTGTAAGTGACCTCACGG+AGG + Chr4:87565508-87565527 None:intergenic 50.0%
TCTTCTTACCACGGCGTCTA+CGG + Chr4:87564813-87564832 None:intergenic 50.0%
TGAACCGTCGAAGCTACAAC+CGG + Chr4:87566443-87566462 None:intergenic 50.0%
! AACCGGTTCTGGCCCAAATA+CGG + Chr4:87566426-87566445 None:intergenic 50.0%
!! TGATGGTCCATTTTTCGCCG+CGG + Chr4:87566378-87566397 None:intergenic 50.0%
ACTAAGTGGGGTCGGCTACA+TGG + Chr4:87564979-87564998 None:intergenic 55.0%
AGCTTCGACGGTTCAGGGAA+CGG - Chr4:87566448-87566467 MsG0480023605.01.T01:CDS 55.0%
ATGTAGCCGACCCCACTTAG+TGG - Chr4:87564978-87564997 MsG0480023605.01.T01:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG - Chr4:87564985-87565004 MsG0480023605.01.T01:intron 55.0%
CGTAGCTGCAGGAACCACAT+CGG - Chr4:87566399-87566418 MsG0480023605.01.T01:CDS 55.0%
CTGCGGCCCATACAGTGTTA+GGG + Chr4:87566327-87566346 None:intergenic 55.0%
CTTCTTACCACGGCGTCTAC+GGG + Chr4:87564812-87564831 None:intergenic 55.0%
GAACCACATCGGCCCGTATT+TGG - Chr4:87566410-87566429 MsG0480023605.01.T01:CDS 55.0%
GGCGGTAAGCAACTAAACCG+CGG - Chr4:87566358-87566377 MsG0480023605.01.T01:CDS 55.0%
GGTTCCTGCAGCTACGTTGA+TGG + Chr4:87566395-87566414 None:intergenic 55.0%
GGTTGTAGCTTCGACGGTTC+AGG - Chr4:87566442-87566461 MsG0480023605.01.T01:CDS 55.0%
TGGACCATCAACGTAGCTGC+AGG - Chr4:87566388-87566407 MsG0480023605.01.T01:CDS 55.0%
TGTAGCCGACCCCACTTAGT+GGG - Chr4:87564979-87564998 MsG0480023605.01.T01:intron 55.0%
TTTAGTTGCTTACCGCCGCC+TGG + Chr4:87566355-87566374 None:intergenic 55.0%
! ACCGGTTCTGGCCCAAATAC+GGG + Chr4:87566425-87566444 None:intergenic 55.0%
! GTCGAAGCTACAACCGGTTC+TGG + Chr4:87566437-87566456 None:intergenic 55.0%
CGATGCCAAACCGGTGACTG+CGG - Chr4:87566472-87566491 MsG0480023605.01.T01:CDS 60.0%
GCCCGTATTTGGGCCAGAAC+CGG - Chr4:87566421-87566440 MsG0480023605.01.T01:CDS 60.0%
GCTGCGGCCCATACAGTGTT+AGG + Chr4:87566328-87566347 None:intergenic 60.0%
GGGAACGGTCGATGCCAAAC+CGG - Chr4:87566463-87566482 MsG0480023605.01.T01:CDS 60.0%
CAGCTTACCGCCGCAGTCAC+CGG + Chr4:87566485-87566504 None:intergenic 65.0%
GGCCCAAATACGGGCCGATG+TGG + Chr4:87566416-87566435 None:intergenic 65.0%
GTATGGGCCGCAGCTGTACC+AGG - Chr4:87566334-87566353 MsG0480023605.01.T01:CDS 65.0%
TGCCAAACCGGTGACTGCGG+CGG - Chr4:87566475-87566494 MsG0480023605.01.T01:CDS 65.0%
! TACCGCCGCAGTCACCGGTT+TGG + Chr4:87566480-87566499 None:intergenic 65.0%
ACCGCCGCCTGGTACAGCTG+CGG + Chr4:87566344-87566363 None:intergenic 70.0%
GAGAAGGCCCGTAGACGCCG+TGG - Chr4:87564802-87564821 MsG0480023605.01.T01:CDS 70.0%
TGGGCCGCAGCTGTACCAGG+CGG - Chr4:87566337-87566356 MsG0480023605.01.T01:CDS 70.0%
GCCGCAGCTGTACCAGGCGG+CGG - Chr4:87566340-87566359 MsG0480023605.01.T01:CDS 75.0%
Chromosome Type Strat End Strand Name
Chr4 gene 87564671 87566519 87564671 ID=MsG0480023605.01;Name=MsG0480023605.01
Chr4 mRNA 87564671 87566519 87564671 ID=MsG0480023605.01.T01;Parent=MsG0480023605.01;Name=MsG0480023605.01.T01;_AED=0.73;_eAED=0.73;_QI=0|0|0|0.5|0|0|2|0|166
Chr4 exon 87566247 87566519 87566247 ID=MsG0480023605.01.T01:exon:1900;Parent=MsG0480023605.01.T01
Chr4 exon 87564671 87564895 87564671 ID=MsG0480023605.01.T01:exon:1899;Parent=MsG0480023605.01.T01
Chr4 CDS 87566247 87566519 87566247 ID=MsG0480023605.01.T01:cds;Parent=MsG0480023605.01.T01
Chr4 CDS 87564671 87564895 87564671 ID=MsG0480023605.01.T01:cds;Parent=MsG0480023605.01.T01
Gene Sequence

>MsG0480023605.01.T01

ATGTTGCGTTGGATGAGTGGTAAGACTAGACATGATAGGATTAGGAATGACATCATTAGAGAGAGAGTGGGGGTAGCACCTATAGTAGAAAAGTTTGTAGAAAATAGGCTTAGATGGTTTGGACATGTAGAGAGAAGGCCCGTAGACGCCGTGGTAAGAAGAGTAGATCAAATGGAGGAGAGTCAGGTTAAAAGAGGTAGAGGAAGACCTAAGAAAACTATTAGAGAAACCATTAGAAAAGATTTAGAGGTCAATGAGTTGGATCCAAATATGGCAGCAACATTCGACATCACAAACAATTGCCCTAACACTGTATGGGCCGCAGCTGTACCAGGCGGCGGTAAGCAACTAAACCGCGGCGAAAAATGGACCATCAACGTAGCTGCAGGAACCACATCGGCCCGTATTTGGGCCAGAACCGGTTGTAGCTTCGACGGTTCAGGGAACGGTCGATGCCAAACCGGTGACTGCGGCGGTAAGCTGAACTGCCAAGCTTAC
Protein sequence

>MsG0480023605.01.T01

MLRWMSGKTRHDRIRNDIIRERVGVAPIVEKFVENRLRWFGHVERRPVDAVVRRVDQMEESQVKRGRGRPKKTIRETIRKDLEVNELDPNMAATFDITNNCPNTVWAAAVPGGGKQLNRGEKWTINVAAGTTSARIWARTGCSFDGSGNGRCQTGDCGGKLNCQAY