AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680033136.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680033136.01.T01 MTR_6g452730 97.396 192 5 0 7 198 1 192 5.35e-139 386
MsG0680033136.01.T01 MTR_1g101120 72.727 198 54 0 1 198 1 198 1.29e-107 307
MsG0680033136.01.T01 MTR_4g018880 47.701 174 79 1 21 194 18 179 1.86e-55 174
MsG0680033136.01.T01 MTR_7g066110 50.898 167 76 3 16 177 1 166 3.09e-55 173
MsG0680033136.01.T01 MTR_4g018860 50.000 160 79 1 10 169 7 165 6.93e-53 169
MsG0680033136.01.T01 MTR_4g018850 49.091 165 72 1 30 194 27 179 2.73e-52 167
MsG0680033136.01.T01 MTR_4g018880 53.043 115 54 0 21 135 18 132 7.42e-43 140
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680033136.01.T01 AT5G52390 56.633 196 71 6 11 198 6 195 5.68e-70 211
MsG0680033136.01.T01 AT3G54040 49.383 162 75 3 28 189 26 180 6.20e-51 162
MsG0680033136.01.T01 AT3G54040 49.383 162 75 3 28 189 82 236 2.75e-50 163

Find 38 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAACATTAGCATGAGAAATT+TGG 0.277141 6:+57741961 MsG0680033136.01.T01:CDS
GATTGAAGCTGATAAATTAA+AGG 0.308737 6:+57744351 MsG0680033136.01.T01:CDS
TTCATGGCTTCAGAGGATTC+TGG 0.318318 6:-57745377 None:intergenic
GGTGGGATTGTTGGTGCAAC+TGG 0.322423 6:-57745416 None:intergenic
GCACCAGGACCGTTGCATTC+TGG 0.336818 6:+57745335 MsG0680033136.01.T01:CDS
AATTTCTCATGCTAATGTTA+AGG 0.338744 6:-57741958 None:intergenic
TGCATTGGTCACTTTCAATA+TGG 0.343401 6:-57744375 None:intergenic
ATTTCTCATGCTAATGTTAA+GGG 0.343971 6:-57741957 None:intergenic
AGGTTCAACTGTGAGTTTCA+TGG 0.344462 6:-57745393 None:intergenic
ATGCATTAAGTCTTGTGGTT+TGG 0.385790 6:+57744393 MsG0680033136.01.T01:CDS
TGCTAATGCTCGTCGAGAAA+TGG 0.427098 6:+57745286 MsG0680033136.01.T01:CDS
ACTTAGAATGGTGGGATTGT+TGG 0.430110 6:-57745425 None:intergenic
GAGAAGCATGTAAAGAGAAA+TGG 0.432034 6:+57744298 MsG0680033136.01.T01:CDS
ACCTTGAGCCTCACACAACT+TGG 0.437313 6:-57745264 None:intergenic
GGTTTGGACAGAAAATCCTT+TGG 0.451628 6:+57744409 MsG0680033136.01.T01:CDS
CTGCAAATGCGCACGTGTCT+TGG 0.455864 6:-57744246 None:intergenic
CTCTACTTCAACCTTGCTGC+TGG 0.455905 6:+57744520 MsG0680033136.01.T01:CDS
AAGTAGAGATCAACAATGTT+GGG 0.477139 6:-57744505 None:intergenic
GAAGTAGAGATCAACAATGT+TGG 0.484563 6:-57744506 None:intergenic
ATGGCTGAGATCAAAAGCTC+TGG 0.492168 6:+57745305 MsG0680033136.01.T01:CDS
GTTGCAGTGGAAGGAACTCT+AGG 0.510275 6:+57742007 MsG0680033136.01.T01:CDS
AAAAGCTCTCCTACTTAGAA+TGG 0.511709 6:-57745437 None:intergenic
TTTCCAGAATGCAACGGTCC+TGG 0.512876 6:-57745338 None:intergenic
TTCAACCTTGCTGCTGGTGA+AGG 0.536326 6:+57744526 MsG0680033136.01.T01:CDS
GACCAATGCATTAAGTCTTG+TGG 0.538802 6:+57744388 MsG0680033136.01.T01:CDS
CCCAAGTTGTGTGAGGCTCA+AGG 0.543865 6:+57745263 MsG0680033136.01.T01:CDS
AGCTCTCCTACTTAGAATGG+TGG 0.544053 6:-57745434 None:intergenic
GGGATTGTTGGTGCAACTGG+AGG 0.551808 6:-57745413 None:intergenic
CCTTGAGCCTCACACAACTT+GGG 0.562458 6:-57745263 None:intergenic
TGTGAGTTTCATGGCTTCAG+AGG 0.570124 6:-57745384 None:intergenic
GCTCTCCTACTTAGAATGGT+GGG 0.572840 6:-57745433 None:intergenic
AGCTCTGGAATTGTTGCACC+AGG 0.572975 6:+57745320 MsG0680033136.01.T01:CDS
TGTAACACTGAGGAGAACAA+AGG 0.597700 6:-57744474 None:intergenic
AACCACAAGACTTAATGCAT+TGG 0.598582 6:-57744390 None:intergenic
GTTTCTTCCCAAGTTGTGTG+AGG 0.613393 6:+57745256 MsG0680033136.01.T01:CDS
AGAATCAGATGATATTCCAA+AGG 0.620017 6:-57744425 None:intergenic
GTGTACCTTCACCAGCAGCA+AGG 0.664846 6:-57744531 None:intergenic
ATGAACTTTCCAGAATGCAA+CGG 0.670221 6:-57745344 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAATTATAAATTTTTTT+GGG + Chr6:57742876-57742895 MsG0680033136.01.T01:intron 0.0%
!!! TAAAAAATTATAAATTTTTT+TGG + Chr6:57742875-57742894 MsG0680033136.01.T01:intron 0.0%
!! AAAAATCGTAAAAAAAAATT+CGG + Chr6:57743911-57743930 MsG0680033136.01.T01:intron 10.0%
!! ACAAAAATTAACTTAATAAT+AGG + Chr6:57742950-57742969 MsG0680033136.01.T01:intron 10.0%
!! ATTATAAATGACAAAAAAAA+TGG - Chr6:57744804-57744823 None:intergenic 10.0%
!! CAAAAATTAACTTAATAATA+GGG + Chr6:57742951-57742970 MsG0680033136.01.T01:intron 10.0%
!! TTTGATTCAAATTAATATAA+AGG - Chr6:57745160-57745179 None:intergenic 10.0%
!!! ACAAAATCAATATTTTTAAA+AGG + Chr6:57743400-57743419 MsG0680033136.01.T01:intron 10.0%
!!! ATATTTTCATCTTTAATTTT+TGG + Chr6:57743182-57743201 MsG0680033136.01.T01:intron 10.0%
!!! ATTTTCTTTTAATTATGTAT+AGG + Chr6:57745230-57745249 MsG0680033136.01.T01:intron 10.0%
!!! CAAAATCAATATTTTTAAAA+GGG + Chr6:57743401-57743420 MsG0680033136.01.T01:intron 10.0%
!! AAAAACCGTAAAAAAAAATT+CGG + Chr6:57743751-57743770 MsG0680033136.01.T01:intron 15.0%
!! AAAATCGTAAAAAAAAATTC+GGG + Chr6:57743912-57743931 MsG0680033136.01.T01:intron 15.0%
!! ATAGAAAAATTGAATTAGTA+AGG + Chr6:57743101-57743120 MsG0680033136.01.T01:intron 15.0%
!! CAAAAAAACTTAACTAATTT+AGG - Chr6:57742132-57742151 None:intergenic 15.0%
!! GAAAATTTGGTATATTTATA+GGG + Chr6:57743042-57743061 MsG0680033136.01.T01:intron 15.0%
!!! AATTTTCTTATAAATGTGAT+TGG - Chr6:57743223-57743242 None:intergenic 15.0%
!!! AGAATTTTAAAGGATTTTAA+AGG + Chr6:57744771-57744790 MsG0680033136.01.T01:intron 15.0%
!!! ATATGATTTTACTTTAAAAG+AGG - Chr6:57742699-57742718 None:intergenic 15.0%
!!! ATGAATTTTATGTTTTAAGT+CGG - Chr6:57744642-57744661 None:intergenic 15.0%
!!! CTGAAAAAACTAAAATTTTT+CGG + Chr6:57743725-57743744 MsG0680033136.01.T01:intron 15.0%
!!! TAGTGATTGAAAATTTTATA+GGG + Chr6:57742982-57743001 MsG0680033136.01.T01:intron 15.0%
!!! TATGATTTTACTTTAAAAGA+GGG - Chr6:57742698-57742717 None:intergenic 15.0%
!!! TATTTAATCCTTTCTTTTAA+TGG + Chr6:57743075-57743094 MsG0680033136.01.T01:intron 15.0%
!!! TTGAATTTTTAAAGTTTTGA+TGG + Chr6:57742374-57742393 MsG0680033136.01.T01:intron 15.0%
!!! TTTATAATACAAGTATTTTG+TGG + Chr6:57744816-57744835 MsG0680033136.01.T01:intron 15.0%
!! AAAACCGTAAAAAAAAATTC+GGG + Chr6:57743752-57743771 MsG0680033136.01.T01:intron 20.0%
!! ATAATTCATGAAGATAATGA+TGG - Chr6:57745101-57745120 None:intergenic 20.0%
!! CGAAAATTTGGTATATTTAT+AGG + Chr6:57743041-57743060 MsG0680033136.01.T01:intron 20.0%
!! GAATTAATTCAAGTCAAATA+AGG - Chr6:57742409-57742428 None:intergenic 20.0%
!! TAAGGAAAAAAAATAAGTCA+GGG - Chr6:57743603-57743622 None:intergenic 20.0%
!! TCAAATGATTAAGAATTACA+GGG + Chr6:57744057-57744076 MsG0680033136.01.T01:intron 20.0%
!! TCAAATGATTAAGAATTACA+GGG - Chr6:57744076-57744057 None:intergenic 20.0%
!! TTAAGGAAAAAAAATAAGTC+AGG - Chr6:57743604-57743623 None:intergenic 20.0%
!!! AAATCTCGATTTTAAAAACT+TGG + Chr6:57745069-57745088 MsG0680033136.01.T01:intron 20.0%
!!! ACAAAACCATTATTTTAGAA+AGG - Chr6:57744161-57744180 None:intergenic 20.0%
!!! ACAAAATCGTAGAATTTTAA+AGG + Chr6:57744761-57744780 MsG0680033136.01.T01:intron 20.0%
!!! CAAAACCATTATTTTAGAAA+GGG - Chr6:57744160-57744179 None:intergenic 20.0%
!!! CTGAAAAAACTGAAATTTTT+CGG + Chr6:57743885-57743904 MsG0680033136.01.T01:intron 20.0%
!!! GTAGTGATTGAAAATTTTAT+AGG + Chr6:57742981-57743000 MsG0680033136.01.T01:intron 20.0%
!!! TAAAATTCTACGATTTTGTA+TGG - Chr6:57744760-57744779 None:intergenic 20.0%
!!! TGAAGATTGAAAACTTTTAA+GGG - Chr6:57742667-57742686 None:intergenic 20.0%
!!! TTTTCCCGAATTTTTTTTTA+CGG - Chr6:57743759-57743778 None:intergenic 20.0%
!!! TTTTTTTATAAATGTGACTG+AGG + Chr6:57743336-57743355 MsG0680033136.01.T01:intron 20.0%
! AAAAAAATTCGGGAAAAAAC+TGG + Chr6:57743762-57743781 MsG0680033136.01.T01:intron 25.0%
! AAAAAATTCGGGAAAAAACT+GGG + Chr6:57743763-57743782 MsG0680033136.01.T01:intron 25.0%
! AAGGAAAAAAAAATAAGCCA+GGG + Chr6:57743958-57743977 MsG0680033136.01.T01:intron 25.0%
! AAGGAAAAAAAATAAGTCAG+GGG - Chr6:57743602-57743621 None:intergenic 25.0%
! AATTCTCTCATTAAGTTTAG+TGG + Chr6:57743140-57743159 MsG0680033136.01.T01:intron 25.0%
! AATTTCTCATGCTAATGTTA+AGG - Chr6:57741961-57741980 None:intergenic 25.0%
! ATTTCTCATGCTAATGTTAA+GGG - Chr6:57741960-57741979 None:intergenic 25.0%
! CCATCAAAACTATCAAAATA+AGG - Chr6:57742491-57742510 None:intergenic 25.0%
! CTCAAATGATTAAGAATTAC+AGG + Chr6:57744056-57744075 MsG0680033136.01.T01:intron 25.0%
! CTCAAATGATTAAGAATTAC+AGG - Chr6:57744075-57744056 None:intergenic 25.0%
! GATTGAAGCTGATAAATTAA+AGG + Chr6:57744351-57744370 MsG0680033136.01.T01:CDS 25.0%
! TAACATTAGCATGAGAAATT+TGG + Chr6:57741961-57741980 MsG0680033136.01.T01:CDS 25.0%
! TCATATAGATCTCTAATATG+TGG + Chr6:57744181-57744200 MsG0680033136.01.T01:intron 25.0%
! TCTATCAACCATTAAAAGAA+AGG - Chr6:57743086-57743105 None:intergenic 25.0%
! TGACTTGAATTAATTCATAG+AGG + Chr6:57742413-57742432 MsG0680033136.01.T01:intron 25.0%
! TTCTTATAAATGTGATTGGA+TGG - Chr6:57743219-57743238 None:intergenic 25.0%
!! AAGTTGAAGGAAAATTTTAG+AGG + Chr6:57743010-57743029 MsG0680033136.01.T01:intron 25.0%
!! AATGAAGTTTAAGATCATGA+TGG - Chr6:57742051-57742070 None:intergenic 25.0%
!! AGTTGAAGGAAAATTTTAGA+GGG + Chr6:57743011-57743030 MsG0680033136.01.T01:intron 25.0%
!! ATGAAGTTTAAGATCATGAT+GGG - Chr6:57742050-57742069 None:intergenic 25.0%
!! CTAATTTAGGTTAACATGAA+TGG - Chr6:57742119-57742138 None:intergenic 25.0%
!! GTGAAGATTGAAAACTTTTA+AGG - Chr6:57742668-57742687 None:intergenic 25.0%
!! TATCTAGTTTAGTTATCTAC+AGG - Chr6:57742449-57742468 None:intergenic 25.0%
!! TATTTTGTGGACTTTAAACT+GGG + Chr6:57744829-57744848 MsG0680033136.01.T01:intron 25.0%
!!! ACTAAACTAGATAGTTTTGA+TGG + Chr6:57742456-57742475 MsG0680033136.01.T01:intron 25.0%
!!! CCTTATTTTGATAGTTTTGA+TGG + Chr6:57742488-57742507 MsG0680033136.01.T01:intron 25.0%
!!! GAAGTTTTGAATTTAAATGC+TGG + Chr6:57742320-57742339 MsG0680033136.01.T01:intron 25.0%
!!! GATTTTGATGCTATTTAACT+AGG - Chr6:57744730-57744749 None:intergenic 25.0%
!!! TATTTTGTCGACTTTAAACT+TGG + Chr6:57744923-57744942 MsG0680033136.01.T01:intron 25.0%
!!! TCTTACCCTTTCTAAAATAA+TGG + Chr6:57744152-57744171 MsG0680033136.01.T01:intron 25.0%
AAAAAAATTCGGGAAAAAGC+TGG + Chr6:57743922-57743941 MsG0680033136.01.T01:intron 30.0%
AAAAAATTCGGGAAAAAGCT+GGG + Chr6:57743923-57743942 MsG0680033136.01.T01:intron 30.0%
AAAATCGCAATCAAAATCGA+TGG - Chr6:57745010-57745029 None:intergenic 30.0%
AAATTTCGTCCTATCTTACA+TGG + Chr6:57742239-57742258 MsG0680033136.01.T01:intron 30.0%
AAGTAGAGATCAACAATGTT+GGG - Chr6:57744508-57744527 None:intergenic 30.0%
ACGTCAGCAAATTACAAAAA+TGG - Chr6:57744005-57744024 None:intergenic 30.0%
AGAATCAGATGATATTCCAA+AGG - Chr6:57744428-57744447 None:intergenic 30.0%
AGCAAATTACAAAAATGGCA+TGG - Chr6:57744000-57744019 None:intergenic 30.0%
AGGAAAAAAAAATAAGCCAG+GGG + Chr6:57743959-57743978 MsG0680033136.01.T01:intron 30.0%
CACTGCAACAAAAAATACAA+AGG - Chr6:57741996-57742015 None:intergenic 30.0%
CATTGAACAACATATGTATC+TGG + Chr6:57743259-57743278 MsG0680033136.01.T01:intron 30.0%
CTATGAATTTGAGTCATTGA+AGG - Chr6:57744684-57744703 None:intergenic 30.0%
GAAGGAAAAAAAAATAAGCC+AGG + Chr6:57743957-57743976 MsG0680033136.01.T01:intron 30.0%
GACTTCTAGATAACTAAACT+TGG + Chr6:57742580-57742599 MsG0680033136.01.T01:intron 30.0%
GCAAATTACAAAAATGGCAT+GGG - Chr6:57743999-57744018 None:intergenic 30.0%
GTGAAAATCACCATCAAATA+AGG - Chr6:57742523-57742542 None:intergenic 30.0%
TGTGGTGAAATTAATATTGC+AGG + Chr6:57744199-57744218 MsG0680033136.01.T01:intron 30.0%
TTATAGGGACTAAAAGTTGA+AGG + Chr6:57742997-57743016 MsG0680033136.01.T01:intron 30.0%
! AACTAGGATTTTGCTTGTTT+TGG - Chr6:57744714-57744733 None:intergenic 30.0%
! AGCTGGGAATAAAATTTTGA+AGG + Chr6:57743939-57743958 MsG0680033136.01.T01:intron 30.0%
! GTATTTTGTGGACTTTAAAC+TGG + Chr6:57744828-57744847 MsG0680033136.01.T01:intron 30.0%
!! ACTAGGATTTTGCTTGTTTT+GGG - Chr6:57744713-57744732 None:intergenic 30.0%
!! GTGATTTTCACCTTATTTGA+TGG + Chr6:57742510-57742529 MsG0680033136.01.T01:intron 30.0%
!!! ATTTTTGTAATTTGCTGACG+TGG + Chr6:57744004-57744023 MsG0680033136.01.T01:intron 30.0%
!!! CTTTGTATTTTTTGTTGCAG+TGG + Chr6:57741994-57742013 MsG0680033136.01.T01:CDS 30.0%
AACCACAAGACTTAATGCAT+TGG - Chr6:57744393-57744412 None:intergenic 35.0%
AAGAATTACAGGGACAAGAT+GGG + Chr6:57744067-57744086 MsG0680033136.01.T01:intron 35.0%
AAGAATTACAGGGACAAGAT+GGG - Chr6:57744086-57744067 None:intergenic 35.0%
ACGTCAGCAAATTACCAAAA+TGG + Chr6:57743556-57743575 MsG0680033136.01.T01:intron 35.0%
AGCAAATTACCAAAATGGCA+TGG + Chr6:57743561-57743580 MsG0680033136.01.T01:intron 35.0%
ATGAACTTTCCAGAATGCAA+CGG - Chr6:57745347-57745366 None:intergenic 35.0%
GAAGTAGAGATCAACAATGT+TGG - Chr6:57744509-57744528 None:intergenic 35.0%
GAGGGACTAAAACGAAAATT+TGG + Chr6:57743029-57743048 MsG0680033136.01.T01:intron 35.0%
GCAAATTACCAAAATGGCAT+GGG + Chr6:57743562-57743581 MsG0680033136.01.T01:intron 35.0%
GGTGAAATTAATATTGCAGG+AGG + Chr6:57744202-57744221 MsG0680033136.01.T01:intron 35.0%
TAAGAATTACAGGGACAAGA+TGG + Chr6:57744066-57744085 MsG0680033136.01.T01:intron 35.0%
TAAGAATTACAGGGACAAGA+TGG - Chr6:57744085-57744066 None:intergenic 35.0%
TCAAATGACCCCTAATTACA+GGG + Chr6:57744117-57744136 MsG0680033136.01.T01:intron 35.0%
TCAAATGACCCCTAATTACA+GGG - Chr6:57744136-57744117 None:intergenic 35.0%
TTCAAATGACCCCTAATTAC+AGG + Chr6:57744116-57744135 MsG0680033136.01.T01:intron 35.0%
TTCAAATGACCCCTAATTAC+AGG - Chr6:57744135-57744116 None:intergenic 35.0%
! AGATTTTGCTTCACGTCTAA+AGG - Chr6:57745055-57745074 None:intergenic 35.0%
! AGTCGGAATTTTCACTACAA+TGG - Chr6:57744625-57744644 None:intergenic 35.0%
! ATGCATTAAGTCTTGTGGTT+TGG + Chr6:57744393-57744412 MsG0680033136.01.T01:CDS 35.0%
! GAGAAGCATGTAAAGAGAAA+TGG + Chr6:57744298-57744317 MsG0680033136.01.T01:CDS 35.0%
! GATTTTGCTTCACGTCTAAA+GGG - Chr6:57745054-57745073 None:intergenic 35.0%
! TGCATTGGTCACTTTCAATA+TGG - Chr6:57744378-57744397 None:intergenic 35.0%
!!! ATTTTGGTAATTTGCTGACG+TGG - Chr6:57743557-57743576 None:intergenic 35.0%
!!! GTATTTTTTGTTGCAGTGGA+AGG + Chr6:57741998-57742017 MsG0680033136.01.T01:CDS 35.0%
AGGTTCAACTGTGAGTTTCA+TGG - Chr6:57745396-57745415 None:intergenic 40.0%
GACCAATGCATTAAGTCTTG+TGG + Chr6:57744388-57744407 MsG0680033136.01.T01:CDS 40.0%
GGTTTGGACAGAAAATCCTT+TGG + Chr6:57744409-57744428 MsG0680033136.01.T01:CDS 40.0%
TGACGTGGCAGTGATTAAAA+GGG + Chr6:57744019-57744038 MsG0680033136.01.T01:intron 40.0%
TGACGTGGCAGTGATTAAAA+GGG - Chr6:57744038-57744019 None:intergenic 40.0%
TGTAACACTGAGGAGAACAA+AGG - Chr6:57744477-57744496 None:intergenic 40.0%
TTTCGTCCTATCTTACATGG+AGG + Chr6:57742242-57742261 MsG0680033136.01.T01:intron 40.0%
! CTTTTCGTCCCTGTAATTAG+GGG + Chr6:57743433-57743452 MsG0680033136.01.T01:intron 40.0%
! CTTTTCGTCCCTGTAATTAG+GGG - Chr6:57743452-57743433 None:intergenic 40.0%
! GCTTTTCGTCCCTGTAATTA+GGG + Chr6:57743432-57743451 MsG0680033136.01.T01:intron 40.0%
! GCTTTTCGTCCCTGTAATTA+GGG - Chr6:57743451-57743432 None:intergenic 40.0%
! GGACAACTTTTGTAACACTG+AGG - Chr6:57744487-57744506 None:intergenic 40.0%
! TGCTTTTCGTCCCTGTAATT+AGG + Chr6:57743431-57743450 MsG0680033136.01.T01:intron 40.0%
! TGCTTTTCGTCCCTGTAATT+AGG - Chr6:57743450-57743431 None:intergenic 40.0%
AATTACAGGGACAAGATGGG+AGG + Chr6:57744070-57744089 MsG0680033136.01.T01:intron 45.0%
AATTACAGGGACAAGATGGG+AGG - Chr6:57744089-57744070 None:intergenic 45.0%
ATGGCTGAGATCAAAAGCTC+TGG + Chr6:57745305-57745324 MsG0680033136.01.T01:CDS 45.0%
CACACACCTCCATGTAAGAT+AGG - Chr6:57742251-57742270 None:intergenic 45.0%
CTGACGTGGCAGTGATTAAA+AGG + Chr6:57744018-57744037 MsG0680033136.01.T01:intron 45.0%
CTGACGTGGCAGTGATTAAA+AGG - Chr6:57744037-57744018 None:intergenic 45.0%
GACGTGGCAGTGATTAAAAG+GGG + Chr6:57744020-57744039 MsG0680033136.01.T01:intron 45.0%
GACGTGGCAGTGATTAAAAG+GGG - Chr6:57744039-57744020 None:intergenic 45.0%
GGAAATGACGAAAATACCCC+TGG - Chr6:57743602-57743583 None:intergenic 45.0%
GTTTCTTCCCAAGTTGTGTG+AGG + Chr6:57745256-57745275 MsG0680033136.01.T01:CDS 45.0%
TGCTAATGCTCGTCGAGAAA+TGG + Chr6:57745286-57745305 MsG0680033136.01.T01:CDS 45.0%
TGTGAGTTTCATGGCTTCAG+AGG - Chr6:57745387-57745406 None:intergenic 45.0%
TTCATGGCTTCAGAGGATTC+TGG - Chr6:57745380-57745399 None:intergenic 45.0%
TTTGCTTCACGTCTAAAGGG+AGG - Chr6:57745051-57745070 None:intergenic 45.0%
! ATGGGAGGATTAGTAAGCTC+AGG + Chr6:57744085-57744104 MsG0680033136.01.T01:intron 45.0%
! ATGGGAGGATTAGTAAGCTC+AGG - Chr6:57744104-57744085 None:intergenic 45.0%
! TGGGAGGATTAGTAAGCTCA+GGG + Chr6:57744086-57744105 MsG0680033136.01.T01:intron 45.0%
! TGGGAGGATTAGTAAGCTCA+GGG - Chr6:57744105-57744086 None:intergenic 45.0%
!! CGTCATTTCCCATGCCATTT+TGG - Chr6:57744007-57743988 None:intergenic 45.0%
!! TTAAAAAACATAAAAAATTT+CGG + Chr6:57743840-57743859 MsG0680033136.01.T01:intron 5.0%
!! TTAAAAATCATAAAAAATTT+CGG + Chr6:57743680-57743699 MsG0680033136.01.T01:intron 5.0%
!!! AAAATTTTGAAATTTTTTTA+AGG - Chr6:57743621-57743640 None:intergenic 5.0%
!!! ATGAATTTTTATATTTTTTA+AGG + Chr6:57742822-57742841 MsG0680033136.01.T01:intron 5.0%
ACCTTGAGCCTCACACAACT+TGG - Chr6:57745267-57745286 None:intergenic 50.0%
CCTTGAGCCTCACACAACTT+GGG - Chr6:57745266-57745285 None:intergenic 50.0%
CTCTACTTCAACCTTGCTGC+TGG + Chr6:57744520-57744539 MsG0680033136.01.T01:CDS 50.0%
GCAGTGATTAAAAGGGGCGA+GGG + Chr6:57744026-57744045 MsG0680033136.01.T01:intron 50.0%
GCAGTGATTAAAAGGGGCGA+GGG - Chr6:57744045-57744026 None:intergenic 50.0%
GTTGCAGTGGAAGGAACTCT+AGG + Chr6:57742007-57742026 MsG0680033136.01.T01:CDS 50.0%
TTCAACCTTGCTGCTGGTGA+AGG + Chr6:57744526-57744545 MsG0680033136.01.T01:CDS 50.0%
TTTCCAGAATGCAACGGTCC+TGG - Chr6:57745341-57745360 None:intergenic 50.0%
!! AGCTCTGGAATTGTTGCACC+AGG + Chr6:57745320-57745339 MsG0680033136.01.T01:CDS 50.0%
CCCAAGTTGTGTGAGGCTCA+AGG + Chr6:57745263-57745282 MsG0680033136.01.T01:CDS 55.0%
CTGCAAATGCGCACGTGTCT+TGG - Chr6:57744249-57744268 None:intergenic 55.0%
GGCAGTGATTAAAAGGGGCG+AGG + Chr6:57744025-57744044 MsG0680033136.01.T01:intron 55.0%
GGCAGTGATTAAAAGGGGCG+AGG - Chr6:57744044-57744025 None:intergenic 55.0%
GGGATTGTTGGTGCAACTGG+AGG - Chr6:57745416-57745435 None:intergenic 55.0%
GGTGGGATTGTTGGTGCAAC+TGG - Chr6:57745419-57745438 None:intergenic 55.0%
GTGTACCTTCACCAGCAGCA+AGG - Chr6:57744534-57744553 None:intergenic 55.0%
GCACCAGGACCGTTGCATTC+TGG + Chr6:57745335-57745354 MsG0680033136.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr6 gene 57741953 57745445 57741953 ID=MsG0680033136.01;Name=MsG0680033136.01
Chr6 mRNA 57741953 57745445 57741953 ID=MsG0680033136.01.T01;Parent=MsG0680033136.01;Name=MsG0680033136.01.T01;_AED=0.42;_eAED=0.43;_QI=0|0|0|1|1|1|3|0|198
Chr6 exon 57741953 57742028 57741953 ID=MsG0680033136.01.T01:exon:3878;Parent=MsG0680033136.01.T01
Chr6 exon 57744221 57744547 57744221 ID=MsG0680033136.01.T01:exon:3879;Parent=MsG0680033136.01.T01
Chr6 exon 57745252 57745445 57745252 ID=MsG0680033136.01.T01:exon:3880;Parent=MsG0680033136.01.T01
Chr6 CDS 57741953 57742028 57741953 ID=MsG0680033136.01.T01:cds;Parent=MsG0680033136.01.T01
Chr6 CDS 57744221 57744547 57744221 ID=MsG0680033136.01.T01:cds;Parent=MsG0680033136.01.T01
Chr6 CDS 57745252 57745445 57745252 ID=MsG0680033136.01.T01:cds;Parent=MsG0680033136.01.T01
Gene Sequence

>MsG0680033136.01.T01

ATGGCCCTTAACATTAGCATGAGAAATTTGGTCATAGTTGCCTTTGTATTTTTTGTTGCAGTGGAAGGAACTCTAGGAGGCATAGAATGTGAGAATTTGAACCAAGACACGTGCGCATTTGCAGTGTCATCTGCAGAAAAACGTTGTGTGCTTGAGAAGCATGTAAAGAGAAATGGTGAAGAAAAATATACATGTAGAACATCAGAGATTGAAGCTGATAAATTAAAGGACCATATTGAAAGTGACCAATGCATTAAGTCTTGTGGTTTGGACAGAAAATCCTTTGGAATATCATCTGATTCTCTTCTTGAATCTAGTTTCACAAAAAACCTTTGTTCTCCTCAGTGTTACAAAAGTTGTCCCAACATTGTTGATCTCTACTTCAACCTTGCTGCTGGTGAAGGTGTGTTTCTTCCCAAGTTGTGTGAGGCTCAAGGTGCTAATGCTCGTCGAGAAATGGCTGAGATCAAAAGCTCTGGAATTGTTGCACCAGGACCGTTGCATTCTGGAAAGTTCATTGCTACATCTCCAGAATCCTCTGAAGCCATGAAACTCACAGTTGAACCTCCAGTTGCACCAACAATCCCACCATTCTAA
Protein sequence

>MsG0680033136.01.T01

MALNISMRNLVIVAFVFFVAVEGTLGGIECENLNQDTCAFAVSSAEKRCVLEKHVKRNGEEKYTCRTSEIEADKLKDHIESDQCIKSCGLDRKSFGISSDSLLESSFTKNLCSPQCYKSCPNIVDLYFNLAAGEGVFLPKLCEAQGANARREMAEIKSSGIVAPGPLHSGKFIATSPESSEAMKLTVEPPVAPTIPPF*