AlfalfaGEDB | MsG0480023695.01

M. sativa cultivar ZhongmuNo.1 / MsG0480023695.01

KEGG: -
GO: GO:0005515 GO:0030247
PFAM: PF13947

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480023695.01.T01	RHN43474.1	89.775	577	11	4	345	875	1	575	0	1021

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480023695.01.T01	P0CH01	31.14	228	121	9	29	246	26	227	7.31E-19	93.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480023695.01.T01	A0A396GVF7	89.775	577	11	4	345	875	1	575	0.0	1021

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047831.01	MsG0480023695.01	-0.859401	4.244236e-63	1.119585e-59
MsG0080047967.01	MsG0480023695.01	0.891843	2.742966e-74	2.445020e-70
MsG0080047999.01	MsG0480023695.01	-0.826671	2.387394e-54	2.253876e-51
MsG0080048036.01	MsG0480023695.01	-0.847209	1.336370e-59	2.357826e-56
MsG0080048059.01	MsG0480023695.01	0.916092	2.696592e-85	7.289134e-81
MsG0080048202.01	MsG0480023695.01	-0.888490	5.636789e-73	4.376278e-69
MsG0080048274.01	MsG0480023695.01	0.802420	5.657741e-49	2.770325e-46
MsG0080048347.01	MsG0480023695.01	-0.827276	1.711016e-54	1.644092e-51
MsG0080048352.01	MsG0480023695.01	-0.823332	1.466763e-53	1.259075e-50
MsG0080048560.01	MsG0480023695.01	0.825501	4.528589e-54	4.135032e-51

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480023695.01.T01	MTR_8g099525	90.476	567	16	4	345	875	1	565	0.0	1010
MsG0480023695.01.T01	MTR_8g099515	88.281	256	19	5	1	253	1	248	1.43e-148	444
MsG0480023695.01.T01	MTR_8g099495	34.328	268	147	13	5	253	3	260	2.23e-28	119
MsG0480023695.01.T01	MTR_3g091200	32.794	247	125	12	39	265	45	270	2.32e-23	103
MsG0480023695.01.T01	MTR_7g117350	35.060	251	128	14	6	251	4	224	3.98e-23	102
MsG0480023695.01.T01	MTR_7g117350	35.060	251	128	14	6	251	4	224	5.71e-23	102
MsG0480023695.01.T01	MTR_8g027745	36.530	219	112	9	39	253	33	228	1.43e-19	92.0
MsG0480023695.01.T01	MTR_1g031540	29.258	229	135	9	32	256	31	236	1.80e-19	94.7
MsG0480023695.01.T01	MTR_1g031580	27.165	254	146	10	32	275	38	262	1.36e-17	87.8
MsG0480023695.01.T01	MTR_1g031320	26.996	263	166	7	7	262	3	246	1.44e-17	87.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480023695.01.T01	AT1G64430	61.647	498	149	6	409	869	67	559	0.0	607
MsG0480023695.01.T01	AT1G64430	61.647	498	149	6	409	869	67	559	0.0	607
MsG0480023695.01.T01	AT1G64430	58.968	407	125	6	409	778	67	468	1.03e-156	468
MsG0480023695.01.T01	AT2G46495	30.672	238	129	9	29	256	26	237	1.08e-20	95.1
MsG0480023695.01.T01	AT5G53110	31.905	210	111	10	39	239	42	228	1.40e-20	95.5
MsG0480023695.01.T01	AT2G46495	31.140	228	121	9	29	246	26	227	7.46e-20	93.2
MsG0480023695.01.T01	AT2G25410	32.016	253	139	14	25	270	25	251	1.52e-18	89.0
MsG0480023695.01.T01	AT2G46494	32.558	215	111	12	34	245	39	222	3.12e-15	79.0
MsG0480023695.01.T01	AT5G36001	31.739	230	111	15	20	245	23	210	7.78e-13	69.3
MsG0480023695.01.T01	AT5G36001	31.739	230	111	15	20	245	23	210	9.67e-12	67.8

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Find 222 sgRNAs with CRISPR-Local

Find 784 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGACAAAGCAAGTTG+TGG	0.586674	4:-88674880	None:intergenic
AAAGGGTGAGGAAGTGTGCG+TGG	0.557503	4:-88674553	None:intergenic
AAATACAAGTATTAGAGTTA+TGG	0.433487	4:-88668692	None:intergenic
AAATCCGCTGTTAACCATCC+TGG	0.533493	4:+88680200	MsG0480023695.01.T01:three_prime_UTR
AAATCTTTAAACTTCGTCCA+AGG	0.492637	4:-88679876	None:intergenic
AAATTTGTCTGCTAAAAGAC+AGG	0.529388	4:-88679998	None:intergenic
AACAAACCACAAAGATGGAC+GGG	0.544397	4:+88677551	MsG0480023695.01.T01:CDS
AACCTTTGGGGTCGTTGACA+TGG	0.492764	4:-88668966	None:intergenic
AACGTGTGAGGTGATTTCAA+CGG	0.666762	4:+88669230	MsG0480023695.01.T01:CDS
AACTCCGTTGTCGACATAAT+AGG	0.389489	4:-88669201	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATTAGCATCCCTCAAT+GGG	-	Chr4:88677817-88677836	None:intergenic	30.0%
AAACAAGTTCATATTGGTAG+CGG	-	Chr4:88676333-88676352	None:intergenic	30.0%
AAAGAAGAATAAAAAGGGTG+AGG	-	Chr4:88674568-88674587	None:intergenic	30.0%
AAATCTTTAAACTTCGTCCA+AGG	-	Chr4:88679879-88679898	None:intergenic	30.0%
AAATGACCTATATTACAAGG+GGG	-	Chr4:88673164-88673183	None:intergenic	30.0%
AAATGACCTATATTACAGGA+AGG	+	Chr4:88673368-88673387	MsG0480023695.01.T01:intron	30.0%
AAATTTGTCTGCTAAAAGAC+AGG	-	Chr4:88680001-88680020	None:intergenic	30.0%
AACGAACTTCAGAATAAGTT+AGG	+	Chr4:88674014-88674033	MsG0480023695.01.T01:intron	30.0%
AACTAAATGATTACGGTCAA+GGG	+	Chr4:88673606-88673625	MsG0480023695.01.T01:intron	30.0%
AACTACAACACCACATAATA+GGG	-	Chr4:88679309-88679328	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	88668685	88680294	88668685	ID=MsG0480023695.01;Name=MsG0480023695.01
Chr4	mRNA	88668685	88680294	88668685	ID=MsG0480023695.01.T01;Parent=MsG0480023695.01;Name=MsG0480023695.01.T01;_AED=0.41;_eAED=0.45;_QI=0\|0.66\|0.69\|1\|0.75\|0.84\|13\|402\|875
Chr4	exon	88668685	88669507	88668685	ID=MsG0480023695.01.T01:exon:7650;Parent=MsG0480023695.01.T01
Chr4	exon	88672194	88672325	88672194	ID=MsG0480023695.01.T01:exon:7651;Parent=MsG0480023695.01.T01
Chr4	exon	88674446	88674931	88674446	ID=MsG0480023695.01.T01:exon:7652;Parent=MsG0480023695.01.T01
Chr4	exon	88675328	88675446	88675328	ID=MsG0480023695.01.T01:exon:7653;Parent=MsG0480023695.01.T01
Chr4	exon	88675600	88675669	88675600	ID=MsG0480023695.01.T01:exon:7654;Parent=MsG0480023695.01.T01
Chr4	exon	88676653	88676759	88676653	ID=MsG0480023695.01.T01:exon:7655;Parent=MsG0480023695.01.T01
Chr4	exon	88677366	88677785	88677366	ID=MsG0480023695.01.T01:exon:7656;Parent=MsG0480023695.01.T01
Chr4	exon	88678110	88678217	88678110	ID=MsG0480023695.01.T01:exon:7657;Parent=MsG0480023695.01.T01
Chr4	exon	88678637	88678704	88678637	ID=MsG0480023695.01.T01:exon:7658;Parent=MsG0480023695.01.T01
Chr4	exon	88678868	88678955	88678868	ID=MsG0480023695.01.T01:exon:7659;Parent=MsG0480023695.01.T01
Chr4	exon	88679075	88679146	88679075	ID=MsG0480023695.01.T01:exon:7660;Parent=MsG0480023695.01.T01
Chr4	exon	88679230	88679283	88679230	ID=MsG0480023695.01.T01:exon:7661;Parent=MsG0480023695.01.T01
Chr4	exon	88679812	88680294	88679812	ID=MsG0480023695.01.T01:exon:7662;Parent=MsG0480023695.01.T01
Chr4	CDS	88668685	88669507	88668685	ID=MsG0480023695.01.T01:cds;Parent=MsG0480023695.01.T01
Chr4	CDS	88672194	88672325	88672194	ID=MsG0480023695.01.T01:cds;Parent=MsG0480023695.01.T01
Chr4	CDS	88674446	88674931	88674446	ID=MsG0480023695.01.T01:cds;Parent=MsG0480023695.01.T01
Chr4	CDS	88675328	88675446	88675328	ID=MsG0480023695.01.T01:cds;Parent=MsG0480023695.01.T01
Chr4	CDS	88675600	88675669	88675600	ID=MsG0480023695.01.T01:cds;Parent=MsG0480023695.01.T01
Chr4	CDS	88676653	88676759	88676653	ID=MsG0480023695.01.T01:cds;Parent=MsG0480023695.01.T01
Chr4	CDS	88677366	88677785	88677366	ID=MsG0480023695.01.T01:cds;Parent=MsG0480023695.01.T01
Chr4	CDS	88678110	88678217	88678110	ID=MsG0480023695.01.T01:cds;Parent=MsG0480023695.01.T01
Chr4	CDS	88678637	88678704	88678637	ID=MsG0480023695.01.T01:cds;Parent=MsG0480023695.01.T01
Chr4	CDS	88678868	88678955	88678868	ID=MsG0480023695.01.T01:cds;Parent=MsG0480023695.01.T01
Chr4	CDS	88679075	88679146	88679075	ID=MsG0480023695.01.T01:cds;Parent=MsG0480023695.01.T01
Chr4	CDS	88679230	88679283	88679230	ID=MsG0480023695.01.T01:cds;Parent=MsG0480023695.01.T01
Chr4	CDS	88679812	88679892	88679812	ID=MsG0480023695.01.T01:cds;Parent=MsG0480023695.01.T01
Chr4	three_prime_UTR	88679893	88680294	88679893	ID=MsG0480023695.01.T01:three_prime_utr;Parent=MsG0480023695.01.T01

Gene Sequence

>MsG0480023695.01.T01

ATGGCTTCCATAACTCTAATACTTGTATTTCATGTCTTTATTATTATTTCCCTACTTCAATCTTCTAAAGGGAAACAAATAATCTGTAATACTTTATCATGTGGTGATATTGATATTGCTTTCCCTTTCGGTTTAAAAGAAAGTAATCAAGATCCTCGTTGTAGCTATTATCCAAACTCCACTTTCCAACTTTCATGCAACAACCAAGGCCAAACTATTCTCAACCTCCCAAACACAGATAACTTAATCATTAAAAACATCGATTACATGTCACAAACAATCCATGTCAACGACCCCAAAGGTTGTCTCCCAAAACGGTACTTAGATAACAATTTTAACCTTTCAGATTCAGCTTTTAAATTAAACCCCCAAGTTTACAGCACTTATAACCTCACTTTCCTACGTTGTCCTTCCAATGTTACTGAATCTCAATTGCCATTAGCACCAATCTATTGCCTAAGAGACAAAGAACATTCAAACTCGTCTTCTTCTCCGGTTATAGTTTCATGGGCAGCACCTATTATGTCGACAACGGAGTTGTCTCAAACGTGTGAGGTGATTTCAACGGCTTTGGTTCCGTTACCGTGGATGGATATTCCTATGTGGCCATATTGGCCTAATCTTGATAGGGATGTTGAGTTAGTTTGGACCAAACCAAGATGTGGAGACTGTTTACTTGATGGTCAAGTTTGTGGGTTCTCTGAGGATGAAAATAGGCTTCAAGTTGAATGTTTCCCTAGTCCCTCCAATCAAGGTATGCTATCTTCTTCTTCTTGCTTTATCAACTGGATATGCAACTTTCTTTTTGGGTTTTCATTCTATGTTTGTTGGTTTATTTTGATTTGTGAAGAAGATGAGAATTATGATGTTGTTGAGGTTGATGATATTGATGTTGAAGAAGATGAGGTTGGAGATAATGATGAGAAAGAATTCATTGAGGAAGAAGAAAACTTTGAAAAGAAAAAGCGTAAATATTCAAATCAATTCAATTCAATTCGAAATCTATATAGTTTTTCACATTTAATTTCTGCTATGATTCTAAACATATCAACACCTTCATTCCCACGCACACTTCCTCACCCTTTTTATTCTTCTTTCAAACTCTCTGAAACTTATTCCAACCGCAACAACAGTAGTTCTTATCCACTTTTCATTTTCACAAAACCATTGAAATTCATCAACCTCAAAGCTTCCGTTAGCGAAAGCCAAAATGAAACATCAAACTCTAACAACTTATTGGATCAACAGCTTCTTCTCCGAGTTGCCTCCACCGCCAAAGACGCCGATGAAGCATTGCAGATAATTGCTGACAACTCTTCCACTAATGGTGGTGTTGTTTCTACTTCTGATTGTTGCTCTGTTATTTCTGCTGCGCTTGATAGGAATAATCCACAACTTGCTTTGTCTGTTTTTTACTCTATGCGCTCCACTTTTCATCAAGTTGGTGAGAGTGGTCCTCTAGTCGAGAGATGGAAGTGGTCGAGGCCAAATGCACGTGTTTATACATTGTTGATTCAGGGTTTGGCAGCATCTTTGAGGGTTTCAGATGCTCTTAGCGTGGTTCCCTTTGGGAAGATAGTGAGGTGTCCTACTTGTCGGATAGCTGTTGCAGTTGCACAGCCACAACAAGGATCTCCTCCTGCCGAACGCAGCATGGACATTACAGCATGGAAAAAGGGGTTAAGATTCCTGAAACTGATGAAGCAAAGCATTCCATCTGCTGTTCACTCTATTGTGGTGCAGACGCCTTCTGGTATGGCTCGTACTCACAGATTTGCAACCGAGACAGTTGATCTGCCAGCACAAGAAGGCGAAAGGGTAACTGTTGCCTTGGCAGCTCCATCAAATGTATATAGAAAGCTGGGCCCCATTAAATTAAGTTCAAGAGCCCCGGATTTATATCCTGGTGAAGCTATGTGCATAACAAACCACAAAGATGGACGGGAATCACGTCTTGTAAGAGCCCCTACAAAAGATGAAAATTCATCATTACTTAAACCCTCCATCCTCTTTCCACTTCTTGCTTTGTTTGCCACTGGTGACGCTGCTTCTGGACTTATTGACCCCAGCCTACCTCAATTCCTATCAGTTGTTGCAGTTTCATCTCTTGCTATTGGCTCTGCCTTGAACTCCTTTGTTTTTCCCCAGTTTAATCAGCTTCCGCAAAGATCGGTGGAAGTAACTGCTATCAAACAACGTCTTTTATCTCAATATGACATGCTTCAGTCTCGCATCAATGACTTAAAAGAAGCTGCTGAAAAAGAGGTTTGGATGTTAGCCCGGATGTGCCAACTTGAGAATAAAATTTCAGCTGTTGGAGAACCTTCTTATCGGACTCGGATAAGTAAAGTCAAAAGGGTCCGAGAGAGCCTGCAAAATTCCCTCCAGGGACGAATTGAATTGATTGCTAGCTATGCTAGGATTTCCTCTATGATTGAAATTGAAGTGGAGATGGAAACTGATGTTCTTGCTGCTGAAACTACTAGTGATGTGGATGGGTTCACAGAACAGATAGAGCAAATCATGGAGCTTGAAAATTTAGAGGAGAGATGGAAAATGCAAGCAGAAGCAAATGATGAGGCCGAAAGACTTCTTAGCTCCCAGCCAGTGCCCTTGGACGAAGTTTAA

Protein sequence

>MsG0480023695.01.T01

MASITLILVFHVFIIISLLQSSKGKQIICNTLSCGDIDIAFPFGLKESNQDPRCSYYPNSTFQLSCNNQGQTILNLPNTDNLIIKNIDYMSQTIHVNDPKGCLPKRYLDNNFNLSDSAFKLNPQVYSTYNLTFLRCPSNVTESQLPLAPIYCLRDKEHSNSSSSPVIVSWAAPIMSTTELSQTCEVISTALVPLPWMDIPMWPYWPNLDRDVELVWTKPRCGDCLLDGQVCGFSEDENRLQVECFPSPSNQGMLSSSSCFINWICNFLFGFSFYVCWFILICEEDENYDVVEVDDIDVEEDEVGDNDEKEFIEEEENFEKKKRKYSNQFNSIRNLYSFSHLISAMILNISTPSFPRTLPHPFYSSFKLSETYSNRNNSSSYPLFIFTKPLKFINLKASVSESQNETSNSNNLLDQQLLLRVASTAKDADEALQIIADNSSTNGGVVSTSDCCSVISAALDRNNPQLALSVFYSMRSTFHQVGESGPLVERWKWSRPNARVYTLLIQGLAASLRVSDALSVVPFGKIVRCPTCRIAVAVAQPQQGSPPAERSMDITAWKKGLRFLKLMKQSIPSAVHSIVVQTPSGMARTHRFATETVDLPAQEGERVTVALAAPSNVYRKLGPIKLSSRAPDLYPGEAMCITNHKDGRESRLVRAPTKDENSSLLKPSILFPLLALFATGDAASGLIDPSLPQFLSVVAVSSLAIGSALNSFVFPQFNQLPQRSVEVTAIKQRLLSQYDMLQSRINDLKEAAEKEVWMLARMCQLENKISAVGEPSYRTRISKVKRVRESLQNSLQGRIELIASYARISSMIEIEVEMETDVLAAETTSDVDGFTEQIEQIMELENLEERWKMQAEANDEAERLLSSQPVPLDEV*