Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080047999.01.T01 | AAB48058.1 | 94.055 | 471 | 1 | 1 | 1 | 444 | 116 | 586 | 0 | 910 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080047999.01.T01 | P19251 | 88.96 | 471 | 25 | 1 | 1 | 444 | 116 | 586 | 0 | 863 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080047999.01.T01 | Q40328 | 94.055 | 471 | 1 | 1 | 1 | 444 | 116 | 586 | 0.0 | 910 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047999.01 | MsG0080048202.01 | 0.823790 | 1.145888e-53 | 9.965998e-51 |
| MsG0080047999.01 | MsG0080049023.01 | -0.812362 | 4.404713e-51 | 2.794974e-48 |
| MsG0080047999.01 | MsG0080049133.01 | -0.812325 | 4.486367e-51 | 2.843951e-48 |
| MsG0080047999.01 | MsG0180000337.01 | 0.819362 | 1.208671e-52 | 9.280656e-50 |
| MsG0080047999.01 | MsG0180000459.01 | -0.803106 | 4.084023e-49 | 2.034784e-46 |
| MsG0080047999.01 | MsG0180001116.01 | -0.855185 | 7.475606e-62 | 1.711193e-58 |
| MsG0080047999.01 | MsG0180002099.01 | -0.832962 | 7.008473e-56 | 7.957008e-53 |
| MsG0080047999.01 | MsG0180002454.01 | -0.801051 | 1.080346e-48 | 5.109585e-46 |
| MsG0080047999.01 | MsG0180002463.01 | -0.801379 | 9.257461e-49 | 4.414480e-46 |
| MsG0080047999.01 | MsG0180003351.01 | -0.811518 | 6.726244e-51 | 4.172520e-48 |
| MsG0080047999.01 | MsG0180004502.01 | -0.811101 | 8.284400e-51 | 5.082760e-48 |
| MsG0080047999.01 | MsG0180004581.01 | -0.801428 | 9.046590e-49 | 4.319199e-46 |
| MsG0080047999.01 | MsG0180004773.01 | -0.851680 | 7.578018e-61 | 1.545826e-57 |
| MsG0080047999.01 | MsG0180004941.01 | 0.855697 | 5.299934e-62 | 1.234218e-58 |
| MsG0080047999.01 | MsG0180005272.01 | 0.850607 | 1.522088e-60 | 2.997846e-57 |
| MsG0080047999.01 | MsG0180005328.01 | 0.857048 | 2.128261e-62 | 5.183931e-59 |
| MsG0080047999.01 | MsG0180005474.01 | -0.821009 | 5.071367e-53 | 4.077372e-50 |
| MsG0080047999.01 | MsG0180005542.01 | 0.806407 | 8.348602e-50 | 4.527755e-47 |
| MsG0080047999.01 | MsG0180006227.01 | -0.811740 | 6.019580e-51 | 3.755960e-48 |
| MsG0080047999.01 | MsG0280006381.01 | -0.812045 | 5.166280e-51 | 3.249803e-48 |
| MsG0080047999.01 | MsG0280006831.01 | -0.806760 | 7.033483e-50 | 3.849096e-47 |
| MsG0080047999.01 | MsG0280006880.01 | -0.827084 | 1.901920e-54 | 1.817299e-51 |
| MsG0080047999.01 | MsG0280006883.01 | 0.830935 | 2.218965e-55 | 2.372380e-52 |
| MsG0080047999.01 | MsG0280007916.01 | 0.821163 | 4.671578e-53 | 3.771725e-50 |
| MsG0080047999.01 | MsG0280008495.01 | 0.840661 | 7.599991e-58 | 1.090061e-54 |
| MsG0080047999.01 | MsG0280008553.01 | 0.835726 | 1.418628e-56 | 1.749840e-53 |
| MsG0080047999.01 | MsG0280008597.01 | 0.812103 | 5.016493e-51 | 3.160854e-48 |
| MsG0080047999.01 | MsG0280008886.01 | 0.806620 | 7.530632e-50 | 4.106275e-47 |
| MsG0080047999.01 | MsG0280009094.01 | -0.817277 | 3.585466e-52 | 2.599466e-49 |
| MsG0080047999.01 | MsG0280010047.01 | 0.816709 | 4.808989e-52 | 3.432798e-49 |
| MsG0080047999.01 | MsG0280010054.01 | 0.806687 | 7.287068e-50 | 3.980415e-47 |
| MsG0080047999.01 | MsG0280010055.01 | 0.804010 | 2.651664e-49 | 1.352287e-46 |
| MsG0080047999.01 | MsG0280010227.01 | -0.834788 | 2.447482e-56 | 2.934714e-53 |
| MsG0080047999.01 | MsG0280010240.01 | 0.803407 | 3.538010e-49 | 1.776505e-46 |
| MsG0080047999.01 | MsG0280010583.01 | -0.854258 | 1.387806e-61 | 3.081508e-58 |
| MsG0080047999.01 | MsG0280011165.01 | 0.804960 | 1.681155e-49 | 8.786040e-47 |
| MsG0080047999.01 | MsG0280011203.01 | 0.816010 | 6.894108e-52 | 4.828233e-49 |
| MsG0080047999.01 | MsG0280011281.01 | -0.820056 | 8.390219e-53 | 6.569325e-50 |
| MsG0080047999.01 | MsG0380013300.01 | 0.812587 | 3.932908e-51 | 2.510489e-48 |
| MsG0080047999.01 | MsG0380014639.01 | -0.826657 | 2.406016e-54 | 2.270507e-51 |
| MsG0080047999.01 | MsG0380014642.01 | -0.806476 | 8.074781e-50 | 4.387085e-47 |
| MsG0080047999.01 | MsG0380014802.01 | 0.983549 | 4.784835e-158 | 1.563876e-151 |
| MsG0080047999.01 | MsG0380015619.01 | -0.805987 | 1.023787e-49 | 5.493468e-47 |
| MsG0080047999.01 | MsG0380015654.01 | -0.834883 | 2.317046e-56 | 2.786421e-53 |
| MsG0080047999.01 | MsG0380016359.01 | 0.818812 | 1.612647e-52 | 1.219595e-49 |
| MsG0080047999.01 | MsG0380016360.01 | 0.802130 | 6.493141e-49 | 3.155764e-46 |
| MsG0080047999.01 | MsG0380017247.01 | 0.856879 | 2.386644e-62 | 5.779886e-59 |
| MsG0080047999.01 | MsG0380017405.01 | -0.815160 | 1.065958e-51 | 7.293002e-49 |
| MsG0080047999.01 | MsG0380017812.01 | -0.842140 | 3.102117e-58 | 4.659451e-55 |
| MsG0080047999.01 | MsG0380018006.01 | 0.855600 | 5.659539e-62 | 1.313641e-58 |
| MsG0080047999.01 | MsG0380018051.01 | 0.826563 | 2.533011e-54 | 2.383897e-51 |
| MsG0080047999.01 | MsG0480018201.01 | -0.830118 | 3.515005e-55 | 3.669253e-52 |
| MsG0080047999.01 | MsG0480018202.01 | -0.831212 | 1.897362e-55 | 2.045125e-52 |
| MsG0080047999.01 | MsG0480018203.01 | -0.826289 | 2.943734e-54 | 2.748982e-51 |
| MsG0080047999.01 | MsG0480019046.01 | -0.823662 | 1.227795e-53 | 1.063959e-50 |
| MsG0080047999.01 | MsG0480019217.01 | 0.803462 | 3.445804e-49 | 1.732698e-46 |
| MsG0080047999.01 | MsG0480019304.01 | 0.829752 | 4.318621e-55 | 4.461175e-52 |
| MsG0080047999.01 | MsG0480020345.01 | 0.804562 | 2.035082e-49 | 1.052636e-46 |
| MsG0080047999.01 | MsG0480021169.01 | -0.805080 | 1.586581e-49 | 8.317011e-47 |
| MsG0080047999.01 | MsG0480022655.01 | 0.834659 | 2.637972e-56 | 3.151038e-53 |
| MsG0080047999.01 | MsG0480022935.01 | -0.822544 | 2.238198e-53 | 1.879156e-50 |
| MsG0080047999.01 | MsG0480023107.01 | 0.810730 | 9.967003e-51 | 6.055255e-48 |
| MsG0080047999.01 | MsG0480023152.01 | -0.807656 | 4.544136e-50 | 2.545330e-47 |
| MsG0080047999.01 | MsG0480023267.01 | 0.857178 | 1.947819e-62 | 4.765641e-59 |
| MsG0080047999.01 | MsG0480023303.01 | 0.857471 | 1.596142e-62 | 3.943871e-59 |
| MsG0080047999.01 | MsG0480023695.01 | -0.826671 | 2.387394e-54 | 2.253876e-51 |
| MsG0080047999.01 | MsG0580024398.01 | 0.808147 | 3.572790e-50 | 2.027303e-47 |
| MsG0080047999.01 | MsG0580024442.01 | -0.828689 | 7.820618e-55 | 7.830068e-52 |
| MsG0080047999.01 | MsG0580025105.01 | -0.809282 | 2.043653e-50 | 1.194934e-47 |
| MsG0080047999.01 | MsG0580025315.01 | -0.807518 | 4.861764e-50 | 2.713613e-47 |
| MsG0080047999.01 | MsG0580027646.01 | 0.803384 | 3.576506e-49 | 1.794750e-46 |
| MsG0080047999.01 | MsG0580027797.01 | 0.836173 | 1.092589e-56 | 1.366150e-53 |
| MsG0080047999.01 | MsG0580028999.01 | 0.806482 | 8.053601e-50 | 4.376161e-47 |
| MsG0080047999.01 | MsG0580030133.01 | 0.818270 | 2.140153e-52 | 1.594482e-49 |
| MsG0080047999.01 | MsG0680030315.01 | 0.839935 | 1.176312e-57 | 1.649650e-54 |
| MsG0080047999.01 | MsG0680030545.01 | 0.824768 | 6.748636e-54 | 6.035491e-51 |
| MsG0080047999.01 | MsG0680030960.01 | 0.826198 | 3.094531e-54 | 2.882414e-51 |
| MsG0080047999.01 | MsG0680030961.01 | 0.814506 | 1.488096e-51 | 1.000404e-48 |
| MsG0080047999.01 | MsG0680031240.01 | 0.803207 | 3.892581e-49 | 1.944493e-46 |
| MsG0080047999.01 | MsG0680035368.01 | -0.849928 | 2.359928e-60 | 4.546352e-57 |
| MsG0080047999.01 | MsG0680035584.01 | -0.800450 | 1.432798e-48 | 6.673571e-46 |
| MsG0080047999.01 | MsG0780035993.01 | 0.809816 | 1.569279e-50 | 9.306665e-48 |
| MsG0080047999.01 | MsG0780035994.01 | -0.812324 | 4.489209e-51 | 2.845639e-48 |
| MsG0080047999.01 | MsG0780035995.01 | -0.809156 | 2.174994e-50 | 1.267462e-47 |
| MsG0080047999.01 | MsG0780036421.01 | 0.808210 | 3.464599e-50 | 1.969208e-47 |
| MsG0080047999.01 | MsG0780036661.01 | 0.823509 | 1.333219e-53 | 1.150266e-50 |
| MsG0080047999.01 | MsG0780037182.01 | 0.802356 | 5.831572e-49 | 2.850819e-46 |
| MsG0080047999.01 | MsG0780037458.01 | -0.815630 | 8.379761e-52 | 5.808311e-49 |
| MsG0080047999.01 | MsG0780038431.01 | 0.803456 | 3.456053e-49 | 1.737542e-46 |
| MsG0080047999.01 | MsG0780039783.01 | 0.800589 | 1.342548e-48 | 6.275319e-46 |
| MsG0080047999.01 | MsG0780039838.01 | -0.819934 | 8.948081e-53 | 6.982017e-50 |
| MsG0080047999.01 | MsG0780039839.01 | -0.830238 | 3.286336e-55 | 3.442707e-52 |
| MsG0080047999.01 | MsG0780039978.01 | 0.857589 | 1.472508e-62 | 3.653111e-59 |
| MsG0080047999.01 | MsG0780041316.01 | 0.812955 | 3.267675e-51 | 2.106006e-48 |
| MsG0080047999.01 | MsG0880041835.01 | -0.809652 | 1.701799e-50 | 1.004931e-47 |
| MsG0080047999.01 | MsG0880042291.01 | -0.822706 | 2.051649e-53 | 1.730427e-50 |
| MsG0080047999.01 | MsG0880042495.01 | 0.800003 | 1.767252e-48 | 8.138325e-46 |
| MsG0080047999.01 | MsG0880042729.01 | 0.837927 | 3.892979e-57 | 5.133637e-54 |
| MsG0080047999.01 | MsG0880043786.01 | 0.803935 | 2.749346e-49 | 1.399475e-46 |
| MsG0080047999.01 | MsG0880043828.01 | 0.813438 | 2.559556e-51 | 1.671553e-48 |
| MsG0080047999.01 | MsG0880043916.01 | 0.837353 | 5.465696e-57 | 7.080617e-54 |
| MsG0080047999.01 | MsG0880045054.01 | 0.846503 | 2.084955e-59 | 3.596592e-56 |
| MsG0080047999.01 | MsG0880045273.01 | -0.800553 | 1.365433e-48 | 6.376366e-46 |
| MsG0080047999.01 | MsG0880045683.01 | 0.814912 | 1.210086e-51 | 8.223560e-49 |
| MsG0080047999.01 | MsG0880046010.01 | -0.809384 | 1.943219e-50 | 1.139329e-47 |
| MsG0080047999.01 | MsG0880046176.01 | 0.846224 | 2.483936e-59 | 4.245491e-56 |
| MsG0080047999.01 | MsG0880046189.01 | -0.809009 | 2.338694e-50 | 1.357422e-47 |
| MsG0080047999.01 | MsG0880046341.01 | -0.808935 | 2.424886e-50 | 1.404650e-47 |
| MsG0080047999.01 | MsG0880046630.01 | -0.806666 | 7.364192e-50 | 4.020169e-47 |
| MsG0080047999.01 | MsG0880047064.01 | 0.811987 | 5.318713e-51 | 3.340602e-48 |
| MsG0080047999.01 | MsG0880047296.01 | 0.809338 | 1.988476e-50 | 1.164388e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080047999.01.T01 | MTR_3g464580 | 94.055 | 471 | 1 | 1 | 1 | 444 | 116 | 586 | 0.0 | 909 |
| MsG0080047999.01.T01 | MTR_5g071360 | 80.851 | 470 | 61 | 3 | 2 | 444 | 117 | 584 | 0.0 | 782 |
| MsG0080047999.01.T01 | MTR_3g464580 | 92.893 | 394 | 1 | 1 | 1 | 367 | 116 | 509 | 0.0 | 753 |
| MsG0080047999.01.T01 | MTR_5g071360 | 81.772 | 395 | 44 | 2 | 2 | 369 | 117 | 510 | 0.0 | 672 |
| MsG0080047999.01.T01 | MTR_3g087220 | 70.787 | 445 | 102 | 2 | 1 | 418 | 116 | 559 | 0.0 | 670 |
| MsG0080047999.01.T01 | MTR_3g464580 | 99.669 | 302 | 1 | 0 | 1 | 302 | 116 | 417 | 0.0 | 630 |
| MsG0080047999.01.T01 | MTR_5g069310 | 76.761 | 142 | 32 | 1 | 303 | 444 | 3 | 143 | 4.93e-72 | 224 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080047999.01.T01 | AT3G47340 | 76.059 | 472 | 82 | 4 | 1 | 444 | 116 | 584 | 0.0 | 744 |
| MsG0080047999.01.T01 | AT5G10240 | 73.246 | 456 | 91 | 3 | 1 | 429 | 116 | 567 | 0.0 | 702 |
| MsG0080047999.01.T01 | AT5G10240 | 73.246 | 456 | 91 | 3 | 1 | 429 | 115 | 566 | 0.0 | 702 |
| MsG0080047999.01.T01 | AT5G65010 | 75.000 | 436 | 81 | 2 | 1 | 409 | 116 | 550 | 0.0 | 696 |
| MsG0080047999.01.T01 | AT5G65010 | 75.057 | 437 | 80 | 3 | 1 | 409 | 116 | 551 | 0.0 | 693 |
| MsG0080047999.01.T01 | AT3G47340 | 78.173 | 394 | 58 | 2 | 1 | 367 | 116 | 508 | 0.0 | 649 |
| MsG0080047999.01.T01 | AT3G47340 | 83.775 | 302 | 48 | 1 | 1 | 302 | 1 | 301 | 0.0 | 548 |
| MsG0080047999.01.T01 | AT3G47340 | 83.775 | 302 | 48 | 1 | 1 | 302 | 116 | 416 | 0.0 | 547 |
Find 107 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACACTATCATATTGTAATT+TGG | 0.171106 | contig164end:-3809 | MsG0080047999.01.T01:three_prime_UTR |
| CTTCTTTGTTTGGTGCCTTA+TGG | 0.206839 | contig164end:+5217 | MsG0080047999.01.T01:intergenic |
| TGAATTTCAGTTTACTATTC+AGG | 0.209606 | contig164end:-6012 | MsG0080047999.01.T01:intron |
| AATAATATTCTGGCTTTATT+AGG | 0.218404 | contig164end:+3988 | MsG0080047999.01.T01:intergenic |
| TGGATTGCATCAGAATTAAA+AGG | 0.220309 | contig164end:-6673 | MsG0080047999.01.T01:CDS |
| GGAGTCAAATGGGTGATTTC+TGG | 0.221522 | contig164end:-5279 | MsG0080047999.01.T01:CDS |
| TCTATAGTAATATGCTTCTT+TGG | 0.249070 | contig164end:+4451 | MsG0080047999.01.T01:intergenic |
| CACTTCCTTGTACATTGGTT+GGG | 0.257852 | contig164end:-6807 | MsG0080047999.01.T01:CDS |
| AGATTAGAAATTTCCATCTT+TGG | 0.261394 | contig164end:+4058 | MsG0080047999.01.T01:intergenic |
| CTTCTCTGGCTCTACAGTTT+TGG | 0.272062 | contig164end:+4087 | MsG0080047999.01.T01:intergenic |
| TGGTTGGATTGATGGTATTA+AGG | 0.289578 | contig164end:-4645 | MsG0080047999.01.T01:CDS |
| CTATTGAGTGGGATGCTTCT+TGG | 0.291336 | contig164end:-4189 | MsG0080047999.01.T01:CDS |
| TTACCTTGCGGCATGTTTCT+TGG | 0.294781 | contig164end:+5187 | MsG0080047999.01.T01:intergenic |
| AAGATGGAAATTTCTAATCT+TGG | 0.303255 | contig164end:-4055 | MsG0080047999.01.T01:CDS |
| CATTGATCCTGAGTATAAAA+TGG | 0.326016 | contig164end:-4952 | MsG0080047999.01.T01:intron |
| GATTACAGGCTGTGATAAAA+AGG | 0.326265 | contig164end:-6369 | MsG0080047999.01.T01:intron |
| TGGTGAAACTCTTCTTTGTT+TGG | 0.329318 | contig164end:+5207 | MsG0080047999.01.T01:intergenic |
| GCAATGCTATGTTATGTATA+AGG | 0.338797 | contig164end:-3905 | MsG0080047999.01.T01:three_prime_UTR |
| TGGAGGTTTGGATTCTTCAT+TGG | 0.339121 | contig164end:-6311 | MsG0080047999.01.T01:CDS |
| CTACTTCTCTTCCAGCCTTA+AGG | 0.348738 | contig164end:+6060 | MsG0080047999.01.T01:intergenic |
| TATGTAGTATAATAATATTC+TGG | 0.351740 | contig164end:+3978 | MsG0080047999.01.T01:intergenic |
| TCAGCAAGGCTAACAGTTCC+TGG | 0.360471 | contig164end:-4244 | MsG0080047999.01.T01:CDS |
| ATCTTTGGTATAATCTTCTC+TGG | 0.371278 | contig164end:+4073 | MsG0080047999.01.T01:intergenic |
| GTTGGCTATGGTTGGATTGA+TGG | 0.373548 | contig164end:-4653 | MsG0080047999.01.T01:CDS |
| CTCATTCTGTGTAGGACTTA+AGG | 0.378447 | contig164end:-6221 | MsG0080047999.01.T01:intron |
| TTGTTGCGAGGGATGCTATA+GGG | 0.380417 | contig164end:-6832 | MsG0080047999.01.T01:CDS |
| TTGTTATTGTAGGTTCTGTT+TGG | 0.383198 | contig164end:-6693 | MsG0080047999.01.T01:intron |
| TACATTGGTTGGGGACTAGA+TGG | 0.386232 | contig164end:-6797 | MsG0080047999.01.T01:intron |
| CTCAAAACTAGAGGATCATA+AGG | 0.390752 | contig164end:+6526 | MsG0080047999.01.T01:intergenic |
| CACAAAAGCTGCTAAGCAAT+GGG | 0.391623 | contig164end:-6257 | MsG0080047999.01.T01:CDS |
| TCACTTCCTTGTACATTGGT+TGG | 0.408558 | contig164end:-6808 | MsG0080047999.01.T01:CDS |
| TCAAATCATCAGGAGTCAAA+TGG | 0.416775 | contig164end:-5290 | MsG0080047999.01.T01:CDS |
| CATATGATGTAACAACAATC+AGG | 0.417746 | contig164end:-5347 | MsG0080047999.01.T01:CDS |
| TTAGGGTGCACCTGACCTTA+AGG | 0.420678 | contig164end:-6075 | MsG0080047999.01.T01:intron |
| TGCAGATTAAAGCTCTTCAT+AGG | 0.424217 | contig164end:-5070 | MsG0080047999.01.T01:intron |
| CCATCTGGAAGAGCAGCATT+TGG | 0.431726 | contig164end:-4151 | MsG0080047999.01.T01:CDS |
| AGAGAAGATTATACCAAAGA+TGG | 0.434916 | contig164end:-4071 | MsG0080047999.01.T01:CDS |
| AGGGTATTTGTATTTCCATA+AGG | 0.443024 | contig164end:-5232 | MsG0080047999.01.T01:CDS |
| CATAAGCAGTATTCAAATAG+TGG | 0.443677 | contig164end:+3739 | MsG0080047999.01.T01:intergenic |
| AGAGGATCATAAGGGGTTGT+TGG | 0.444662 | contig164end:+6535 | MsG0080047999.01.T01:intergenic |
| TGCCTGTTGTGTATTTATCA+AGG | 0.445565 | contig164end:-3927 | MsG0080047999.01.T01:three_prime_UTR |
| GGGGTCACTTCCTTGTACAT+TGG | 0.460121 | contig164end:-6812 | MsG0080047999.01.T01:CDS |
| TCAAAACTAGAGGATCATAA+GGG | 0.460214 | contig164end:+6527 | MsG0080047999.01.T01:intergenic |
| TGTCTCATATTAGCTTTGAA+TGG | 0.461591 | contig164end:+4027 | MsG0080047999.01.T01:intergenic |
| TCAAGCAACCTTGATCCATC+TGG | 0.462431 | contig164end:-4166 | MsG0080047999.01.T01:CDS |
| ATTGTTGCGAGGGATGCTAT+AGG | 0.464075 | contig164end:-6833 | MsG0080047999.01.T01:CDS |
| TTCAGTGATGGAGTTGGCTA+TGG | 0.468716 | contig164end:-4665 | MsG0080047999.01.T01:CDS |
| TGCCTTGATAAATACACAAC+AGG | 0.473537 | contig164end:+3925 | MsG0080047999.01.T01:intergenic |
| TCTCTTCCAGCCTTAAGGTC+AGG | 0.474929 | contig164end:+6065 | MsG0080047999.01.T01:intergenic |
| ACTTCCTTGTACATTGGTTG+GGG | 0.475172 | contig164end:-6806 | MsG0080047999.01.T01:CDS |
| TAATATGCTTCTTTGGTAAG+TGG | 0.476674 | contig164end:+4458 | MsG0080047999.01.T01:intergenic |
| TCTCGAAAGATCAAATCATC+AGG | 0.483191 | contig164end:-5300 | MsG0080047999.01.T01:CDS |
| TTATGTTAAATTTGAATGCA+AGG | 0.489283 | contig164end:-3763 | MsG0080047999.01.T01:three_prime_UTR |
| GCACAAAAGCTGCTAAGCAA+TGG | 0.493861 | contig164end:-6258 | MsG0080047999.01.T01:CDS |
| CAAATCATCAGGAGTCAAAT+GGG | 0.497991 | contig164end:-5289 | MsG0080047999.01.T01:CDS |
| AAATAAATCAACATATGCAT+GGG | 0.500130 | contig164end:-5030 | MsG0080047999.01.T01:CDS |
| TTGGTAAGTGGAGTGTTGAA+AGG | 0.504831 | contig164end:+4470 | MsG0080047999.01.T01:intergenic |
| CTGCTCTTCCAGATGGATCA+AGG | 0.507380 | contig164end:+4158 | MsG0080047999.01.T01:intergenic |
| TTTAAAAGAAAGACTAGATG+TGG | 0.512437 | contig164end:+3848 | MsG0080047999.01.T01:intergenic |
| CCAAATGCTGCTCTTCCAGA+TGG | 0.513203 | contig164end:+4151 | MsG0080047999.01.T01:intergenic |
| AAGACCGGGAGTTTCGTAGA+TGG | 0.513657 | contig164end:-6591 | MsG0080047999.01.T01:CDS |
| GGATTGCATCAGAATTAAAA+GGG | 0.514030 | contig164end:-6672 | MsG0080047999.01.T01:CDS |
| GTGATGGAGTTGGCTATGGT+TGG | 0.516816 | contig164end:-4661 | MsG0080047999.01.T01:CDS |
| CAAATAAATCAACATATGCA+TGG | 0.524556 | contig164end:-5031 | MsG0080047999.01.T01:CDS |
| CAGAAGGAGCAGTTCAGTGA+TGG | 0.534684 | contig164end:-4677 | MsG0080047999.01.T01:CDS |
| ACTTGTACTCGAGCAAAGAC+CGG | 0.535273 | contig164end:-6606 | MsG0080047999.01.T01:CDS |
| CTTGTACTCGAGCAAAGACC+GGG | 0.536345 | contig164end:-6605 | MsG0080047999.01.T01:CDS |
| ACTATAGAATGATCTTTGAA+AGG | 0.537820 | contig164end:-4436 | MsG0080047999.01.T01:CDS |
| GGAATTCATCAAAGTTGCAA+TGG | 0.539496 | contig164end:-4976 | MsG0080047999.01.T01:CDS |
| CAACAGTTTCATTGTTGCGA+GGG | 0.541209 | contig164end:-6843 | MsG0080047999.01.T01:CDS |
| GGTGCACCTGACCTTAAGGC+TGG | 0.541650 | contig164end:-6071 | MsG0080047999.01.T01:CDS |
| AGCAGTCACTGCTAGATACC+TGG | 0.543495 | contig164end:-6284 | MsG0080047999.01.T01:CDS |
| TAGTAAACTGAAATTCATGA+TGG | 0.544517 | contig164end:+6018 | MsG0080047999.01.T01:intergenic |
| AAATGGGTGATTTCTGGAGA+AGG | 0.550290 | contig164end:-5273 | MsG0080047999.01.T01:CDS |
| TTTGAGGAATGCCTTTGAGA+AGG | 0.557124 | contig164end:-6509 | MsG0080047999.01.T01:intron |
| TGTGAATCTTACCTTCTCAA+AGG | 0.560195 | contig164end:+6498 | MsG0080047999.01.T01:intergenic |
| AAATTACACTCATTCTGTGT+AGG | 0.565107 | contig164end:-6229 | MsG0080047999.01.T01:CDS |
| TTTCGAGACATCAGAAACAT+AGG | 0.569570 | contig164end:+5315 | MsG0080047999.01.T01:intergenic |
| TGTTGCGAGGGATGCTATAG+GGG | 0.583881 | contig164end:-6831 | MsG0080047999.01.T01:CDS |
| CATGCAACACTAGCTCCTCC+AGG | 0.589828 | contig164end:+4226 | MsG0080047999.01.T01:intergenic |
| GAGCAGTTCAGTGATGGAGT+TGG | 0.594756 | contig164end:-4671 | MsG0080047999.01.T01:CDS |
| TATAGTCAATAATTGCATAG+AGG | 0.594968 | contig164end:-3957 | MsG0080047999.01.T01:three_prime_UTR |
| TTGATGACTGATGTGCCGTT+CGG | 0.596910 | contig164end:-6346 | MsG0080047999.01.T01:CDS |
| TCGATTTGTAGAACTCAGCA+AGG | 0.601528 | contig164end:-4258 | MsG0080047999.01.T01:intron |
| TAGTCCCCAACCAATGTACA+AGG | 0.608478 | contig164end:+6802 | MsG0080047999.01.T01:intergenic |
| CACAGAGAAAGCTATTGAGT+GGG | 0.608617 | contig164end:-4200 | MsG0080047999.01.T01:CDS |
| GCACAGAGAAAGCTATTGAG+TGG | 0.609213 | contig164end:-4201 | MsG0080047999.01.T01:CDS |
| TGTACCATCTACGAAACTCC+CGG | 0.614554 | contig164end:+6587 | MsG0080047999.01.T01:intergenic |
| AAGGCATTCCTCAAAACTAG+AGG | 0.619679 | contig164end:+6517 | MsG0080047999.01.T01:intergenic |
| AGCTAATATGAGACATGGCA+AGG | 0.619874 | contig164end:-4019 | MsG0080047999.01.T01:exon |
| GTCACTGCTAGATACCTGGC+TGG | 0.621089 | contig164end:-6280 | MsG0080047999.01.T01:CDS |
| ATATGATGTAACAACAATCA+GGG | 0.622688 | contig164end:-5346 | MsG0080047999.01.T01:CDS |
| ACAACAGTTTCATTGTTGCG+AGG | 0.640177 | contig164end:-6844 | MsG0080047999.01.T01:CDS |
| TTCAAAGCTAATATGAGACA+TGG | 0.641602 | contig164end:-4024 | MsG0080047999.01.T01:exon |
| TTGCTCGAGTACAAGTGACC+AGG | 0.642279 | contig164end:+6613 | MsG0080047999.01.T01:intergenic |
| CCAGATAGTAAAACACCGAA+CGG | 0.643802 | contig164end:+6331 | MsG0080047999.01.T01:intergenic |
| CTCGAGTACAAGTGACCAGG+TGG | 0.647322 | contig164end:+6616 | MsG0080047999.01.T01:intergenic |
| CAATCCTCCGTGGTTCAATG+AGG | 0.653887 | contig164end:-6566 | MsG0080047999.01.T01:CDS |
| TCACCAAGAAACATGCCGCA+AGG | 0.655836 | contig164end:-5190 | MsG0080047999.01.T01:intron |
| CAAAACTAGAGGATCATAAG+GGG | 0.656036 | contig164end:+6528 | MsG0080047999.01.T01:intergenic |
| AATAAATCAACATATGCATG+GGG | 0.661879 | contig164end:-5029 | MsG0080047999.01.T01:CDS |
| GGATGGCATAGATGCAATCG+AGG | 0.665437 | contig164end:-5391 | MsG0080047999.01.T01:CDS |
| ACAAAAGCTGCTAAGCAATG+GGG | 0.694915 | contig164end:-6256 | MsG0080047999.01.T01:CDS |
| ATAATAGCCTCATTGAACCA+CGG | 0.694926 | contig164end:+6559 | MsG0080047999.01.T01:intergenic |
| GTAGATGGTACAATCCTCCG+TGG | 0.707926 | contig164end:-6576 | MsG0080047999.01.T01:CDS |
| GCAAGGCTAACAGTTCCTGG+AGG | 0.746433 | contig164end:-4241 | MsG0080047999.01.T01:CDS |
| ATAGCCTCATTGAACCACGG+AGG | 0.797295 | contig164end:+6562 | MsG0080047998.01.T01:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTTTATTAAATATTTTATG+TGG | - | contig164end:5188-5207 | MsG0080047999.01.T01:intron | 10.0% |
| !! | GGATTATTAAAAAATTTCAA+TGG | - | contig164end:4454-4473 | MsG0080047999.01.T01:CDS | 15.0% |
| !! | TATGTAGTATAATAATATTC+TGG | + | contig164end:6635-6654 | MsG0080047999.01.T01:intergenic | 15.0% |
| !!! | ATTGCTTTAATCTTTATTTA+TGG | - | contig164end:4504-4523 | MsG0080047999.01.T01:CDS | 15.0% |
| !! | AAATAAATCAACATATGCAT+GGG | - | contig164end:5580-5599 | MsG0080047999.01.T01:intron | 20.0% |
| !! | AACACTATCATATTGTAATT+TGG | - | contig164end:6801-6820 | MsG0080047999.01.T01:CDS | 20.0% |
| !! | CAACAAAAGTAAAATGAAAT+TGG | + | contig164end:6034-6053 | MsG0080047999.01.T01:intergenic | 20.0% |
| !! | TAAAATTCAAAACATGAAGA+AGG | - | contig164end:5735-5754 | MsG0080047999.01.T01:intron | 20.0% |
| !! | TGGAAAAAAACATTCATTTA+AGG | - | contig164end:4474-4493 | MsG0080047999.01.T01:CDS | 20.0% |
| !! | TTATGTTAAATTTGAATGCA+AGG | - | contig164end:6847-6866 | MsG0080047999.01.T01:CDS | 20.0% |
| !! | TTGTTCGATTTCATAAATAT+AGG | - | contig164end:3854-3873 | MsG0080047999.01.T01:three_prime_UTR | 20.0% |
| !!! | AATAATATTCTGGCTTTATT+AGG | + | contig164end:6625-6644 | MsG0080047999.01.T01:intergenic | 20.0% |
| !!! | ACATTTTTTATGATACCATA+GGG | - | contig164end:5148-5167 | MsG0080047999.01.T01:intron | 20.0% |
| !!! | ATTCTTGAAATTTTTCGTAT+AGG | - | contig164end:6079-6098 | MsG0080047999.01.T01:intron | 20.0% |
| !!! | GAATCAAAAATCAATTTTAG+TGG | - | contig164end:4433-4452 | MsG0080047999.01.T01:CDS | 20.0% |
| !!! | TATTTATGGTATGTTGATTA+GGG | - | contig164end:4518-4537 | MsG0080047999.01.T01:intron | 20.0% |
| !!! | TTATTTATGGTATGTTGATT+AGG | - | contig164end:4517-4536 | MsG0080047999.01.T01:intron | 20.0% |
| ! | AAGATGGAAATTTCTAATCT+TGG | - | contig164end:6555-6574 | MsG0080047999.01.T01:CDS | 25.0% |
| ! | AATAAATCAACATATGCATG+GGG | - | contig164end:5581-5600 | MsG0080047999.01.T01:intron | 25.0% |
| ! | ACTATAGAATGATCTTTGAA+AGG | - | contig164end:6174-6193 | MsG0080047999.01.T01:intron | 25.0% |
| ! | AGATTAGAAATTTCCATCTT+TGG | + | contig164end:6555-6574 | MsG0080047999.01.T01:intergenic | 25.0% |
| ! | ATATGATGTAACAACAATCA+GGG | - | contig164end:5264-5283 | MsG0080047999.01.T01:CDS | 25.0% |
| ! | ATTTGATTAGGCCTTTATTA+AGG | + | contig164end:6325-6344 | MsG0080047999.01.T01:intergenic | 25.0% |
| ! | CAAATAAATCAACATATGCA+TGG | - | contig164end:5579-5598 | MsG0080047999.01.T01:intron | 25.0% |
| ! | TAGACAAATACTATTTGAAG+TGG | + | contig164end:5024-5043 | MsG0080047999.01.T01:intergenic | 25.0% |
| ! | TAGTAAACTGAAATTCATGA+TGG | + | contig164end:4595-4614 | MsG0080047999.01.T01:intergenic | 25.0% |
| ! | TATAGTCAATAATTGCATAG+AGG | - | contig164end:6653-6672 | MsG0080047999.01.T01:CDS | 25.0% |
| ! | TCACAAATTATTCAAATCTC+TGG | + | contig164end:3881-3900 | MsG0080047999.01.T01:intergenic | 25.0% |
| ! | TCTATAGTAATATGCTTCTT+TGG | + | contig164end:6162-6181 | MsG0080047999.01.T01:intergenic | 25.0% |
| ! | TGAAATTGGAAAGAAAATGT+TGG | + | contig164end:6020-6039 | MsG0080047999.01.T01:intergenic | 25.0% |
| ! | TGAATTTCAGTTTACTATTC+AGG | - | contig164end:4598-4617 | MsG0080047999.01.T01:intron | 25.0% |
| ! | TTTAAAAGAAAGACTAGATG+TGG | + | contig164end:6765-6784 | MsG0080047999.01.T01:intergenic | 25.0% |
| !! | ATTTTTATAACAATGTCGCT+TGG | + | contig164end:6243-6262 | MsG0080047999.01.T01:intergenic | 25.0% |
| !! | GAATAATTTGTGACAAGTTT+GGG | - | contig164end:3888-3907 | MsG0080047999.01.T01:three_prime_UTR | 25.0% |
| !! | GTCTTTCTTTTAAATTGATG+TGG | - | contig164end:6771-6790 | MsG0080047999.01.T01:intron | 25.0% |
| !! | TATCATACCATTTTATACTC+AGG | + | contig164end:5668-5687 | MsG0080047999.01.T01:intergenic | 25.0% |
| !! | TGAATAATTTGTGACAAGTT+TGG | - | contig164end:3887-3906 | MsG0080047999.01.T01:three_prime_UTR | 25.0% |
| !!! | CACATTTTTTATGATACCAT+AGG | - | contig164end:5147-5166 | MsG0080047999.01.T01:intron | 25.0% |
| !!! | CATTTTTTATGATACCATAG+GGG | - | contig164end:5149-5168 | MsG0080047999.01.T01:intron | 25.0% |
| !!! | TTCATTTTACTTTTGTTGCA+AGG | - | contig164end:6036-6055 | MsG0080047999.01.T01:CDS | 25.0% |
| AAAAATGCGAGAATTGTCTA+AGG | + | contig164end:4164-4183 | MsG0080047998.01.T01:intergenic | 30.0% | |
| AAAATGCGAGAATTGTCTAA+GGG | + | contig164end:4163-4182 | MsG0080047998.01.T01:intergenic | 30.0% | |
| AAATTACACTCATTCTGTGT+AGG | - | contig164end:4381-4400 | MsG0080047999.01.T01:intron | 30.0% | |
| AAGAAGGAAGAATTGAGAAA+TGG | - | contig164end:5751-5770 | MsG0080047999.01.T01:intron | 30.0% | |
| AAGCATACATCAAAAACCTT+GGG | - | contig164end:4841-4860 | MsG0080047999.01.T01:intron | 30.0% | |
| AGAGAAGATTATACCAAAGA+TGG | - | contig164end:6539-6558 | MsG0080047999.01.T01:CDS | 30.0% | |
| ATCGAAACACAGATTTGATT+AGG | + | contig164end:6337-6356 | MsG0080047999.01.T01:intergenic | 30.0% | |
| ATCTTTGGTATAATCTTCTC+TGG | + | contig164end:6540-6559 | MsG0080047999.01.T01:intergenic | 30.0% | |
| ATGAATTCCTTGTCCAAAAA+TGG | + | contig164end:5623-5642 | MsG0080047999.01.T01:intergenic | 30.0% | |
| CATAAGCAGTATTCAAATAG+TGG | + | contig164end:6874-6893 | MsG0080047999.01.T01:intergenic | 30.0% | |
| CATATGATGTAACAACAATC+AGG | - | contig164end:5263-5282 | MsG0080047999.01.T01:CDS | 30.0% | |
| CATCAAAAACATTGATGTCA+TGG | - | contig164end:4978-4997 | MsG0080047999.01.T01:CDS | 30.0% | |
| CATTGATCCTGAGTATAAAA+TGG | - | contig164end:5658-5677 | MsG0080047999.01.T01:intron | 30.0% | |
| CTCAAAATTGCAAAAAGTTG+CGG | - | contig164end:4783-4802 | MsG0080047999.01.T01:intron | 30.0% | |
| GAATTGAGAAATGGATACTA+AGG | - | contig164end:5760-5779 | MsG0080047999.01.T01:intron | 30.0% | |
| GCAATGCTATGTTATGTATA+AGG | - | contig164end:6705-6724 | MsG0080047999.01.T01:intron | 30.0% | |
| GGATTGATATGTTTGATTAC+AGG | - | contig164end:4227-4246 | MsG0080047999.01.T01:CDS | 30.0% | |
| GGATTGCATCAGAATTAAAA+GGG | - | contig164end:3938-3957 | MsG0080047999.01.T01:three_prime_UTR | 30.0% | |
| TAATATGCTTCTTTGGTAAG+TGG | + | contig164end:6155-6174 | MsG0080047999.01.T01:intergenic | 30.0% | |
| TCAAAACTAGAGGATCATAA+GGG | + | contig164end:4086-4105 | MsG0080047999.01.T01:intergenic | 30.0% | |
| TCAAAATTGCGAAAAGATGT+GGG | - | contig164end:4653-4672 | MsG0080047999.01.T01:CDS | 30.0% | |
| TGATTGATTAAGTTACCTGA+GGG | + | contig164end:6205-6224 | MsG0080047999.01.T01:intergenic | 30.0% | |
| TGGATTGCATCAGAATTAAA+AGG | - | contig164end:3937-3956 | MsG0080047999.01.T01:three_prime_UTR | 30.0% | |
| TTAGACTCAGTATAGCTAAT+AGG | - | contig164end:4206-4225 | MsG0080047999.01.T01:CDS | 30.0% | |
| TTCAAAGCTAATATGAGACA+TGG | - | contig164end:6586-6605 | MsG0080047999.01.T01:CDS | 30.0% | |
| TTGATTGATTAAGTTACCTG+AGG | + | contig164end:6206-6225 | MsG0080047999.01.T01:intergenic | 30.0% | |
| ! | AGGGTATTTGTATTTCCATA+AGG | - | contig164end:5378-5397 | MsG0080047999.01.T01:CDS | 30.0% |
| ! | ATATTTTATGTGGTCTATGC+AGG | - | contig164end:5198-5217 | MsG0080047999.01.T01:CDS | 30.0% |
| ! | TATCTTTTCATTTGTTCTGC+TGG | - | contig164end:3734-3753 | MsG0080047999.01.T01:three_prime_UTR | 30.0% |
| ! | TCATGCAGCACATTTTATAT+AGG | - | contig164end:5910-5929 | MsG0080047999.01.T01:intron | 30.0% |
| ! | TTGATGTCATGGTCTTAATT+TGG | - | contig164end:4989-5008 | MsG0080047999.01.T01:CDS | 30.0% |
| ! | TTGTTATTGTAGGTTCTGTT+TGG | - | contig164end:3917-3936 | MsG0080047999.01.T01:three_prime_UTR | 30.0% |
| !! | TGTCTCATATTAGCTTTGAA+TGG | + | contig164end:6586-6605 | MsG0080047999.01.T01:intergenic | 30.0% |
| !!! | ATTTTTAAGTCGGTTCTGTA+AGG | - | contig164end:4178-4197 | MsG0080047999.01.T01:CDS | 30.0% |
| !!! | CAATTCTCGCATTTTTAAGT+CGG | - | contig164end:4168-4187 | MsG0080047999.01.T01:CDS | 30.0% |
| !!! | TGGGACATTTTTGTTATTGT+AGG | - | contig164end:3907-3926 | MsG0080047999.01.T01:three_prime_UTR | 30.0% |
| AGCATACATCAAAAACCTTG+GGG | - | contig164end:4842-4861 | MsG0080047999.01.T01:intron | 35.0% | |
| ATAATAGCCTCATTGAACCA+CGG | + | contig164end:4054-4073 | MsG0080047999.01.T01:intergenic | 35.0% | |
| ATTACATCGCTCATGTTTGA+AGG | - | contig164end:5455-5474 | MsG0080047999.01.T01:intron | 35.0% | |
| CAAAAAGTTGCGGTCTAATA+GGG | - | contig164end:4793-4812 | MsG0080047999.01.T01:intron | 35.0% | |
| CAAAACTAGAGGATCATAAG+GGG | + | contig164end:4085-4104 | MsG0080047999.01.T01:intergenic | 35.0% | |
| CAAATCATCAGGAGTCAAAT+GGG | - | contig164end:5321-5340 | MsG0080047999.01.T01:CDS | 35.0% | |
| CAAGCATACATCAAAAACCT+TGG | - | contig164end:4840-4859 | MsG0080047999.01.T01:intron | 35.0% | |
| CATAATATTGTTTGCCCCTA+TGG | + | contig164end:5166-5185 | MsG0080047999.01.T01:intergenic | 35.0% | |
| CGAAAAGTTGCAGTCAAATA+GGG | - | contig164end:5054-5073 | MsG0080047999.01.T01:CDS | 35.0% | |
| CTCAAAACTAGAGGATCATA+AGG | + | contig164end:4087-4106 | MsG0080047999.01.T01:intergenic | 35.0% | |
| CTCAAAATTGCGAAAAGATG+TGG | - | contig164end:4652-4671 | MsG0080047999.01.T01:CDS | 35.0% | |
| GATTACAGGCTGTGATAAAA+AGG | - | contig164end:4241-4260 | MsG0080047999.01.T01:CDS | 35.0% | |
| GCCTTTATTAAGGTTCTGTT+GGG | + | contig164end:6315-6334 | MsG0080047999.01.T01:intergenic | 35.0% | |
| GGAATTCATCAAAGTTGCAA+TGG | - | contig164end:5634-5653 | MsG0080047999.01.T01:intron | 35.0% | |
| GTTTGAAGGAAAAAACGAAG+TGG | - | contig164end:5469-5488 | MsG0080047999.01.T01:intron | 35.0% | |
| TCAAATCATCAGGAGTCAAA+TGG | - | contig164end:5320-5339 | MsG0080047999.01.T01:CDS | 35.0% | |
| TCCCAACAGAACCTTAATAA+AGG | - | contig164end:6311-6330 | MsG0080047999.01.T01:CDS | 35.0% | |
| TCTCGAAAGATCAAATCATC+AGG | - | contig164end:5310-5329 | MsG0080047999.01.T01:CDS | 35.0% | |
| TGAACAGAAGTTGTAGCAAA+TGG | + | contig164end:5843-5862 | MsG0080047999.01.T01:intergenic | 35.0% | |
| TGAGAAATGGATACTAAGGA+AGG | - | contig164end:5764-5783 | MsG0080047999.01.T01:intron | 35.0% | |
| TGCAGATTAAAGCTCTTCAT+AGG | - | contig164end:5540-5559 | MsG0080047999.01.T01:intron | 35.0% | |
| TGCCTGTTGTGTATTTATCA+AGG | - | contig164end:6683-6702 | MsG0080047999.01.T01:CDS | 35.0% | |
| TGCCTTGATAAATACACAAC+AGG | + | contig164end:6688-6707 | MsG0080047999.01.T01:intergenic | 35.0% | |
| TGGTGAAACTCTTCTTTGTT+TGG | + | contig164end:5406-5425 | MsG0080047999.01.T01:intergenic | 35.0% | |
| TGTGAATCTTACCTTCTCAA+AGG | + | contig164end:4115-4134 | MsG0080047999.01.T01:intergenic | 35.0% | |
| TTTCGAGACATCAGAAACAT+AGG | + | contig164end:5298-5317 | MsG0080047999.01.T01:intergenic | 35.0% | |
| ! | AAAGTAGAGTAGAGTACCTT+AGG | + | contig164end:5819-5838 | MsG0080047999.01.T01:intergenic | 35.0% |
| ! | AATGTAGTTCTGTTACCTTG+CGG | + | contig164end:5438-5457 | MsG0080047999.01.T01:intergenic | 35.0% |
| ! | AGAGAAGTAGCAGACTTTTT+AGG | - | contig164end:4563-4582 | MsG0080047999.01.T01:intron | 35.0% |
| ! | GAAGGATCTGATGAGATTTT+TGG | - | contig164end:5355-5374 | MsG0080047999.01.T01:CDS | 35.0% |
| ! | GCACATTTTATATAGGCAGA+AGG | - | contig164end:5917-5936 | MsG0080047999.01.T01:intron | 35.0% |
| ! | TGGTTGGATTGATGGTATTA+AGG | - | contig164end:5965-5984 | MsG0080047999.01.T01:intron | 35.0% |
| ! | TGTTTACATGTTTTGCAGCA+TGG | + | contig164end:5992-6011 | MsG0080047999.01.T01:intergenic | 35.0% |
| ! | TGTTTTACTATCTGGAGGTT+TGG | - | contig164end:4287-4306 | MsG0080047999.01.T01:intron | 35.0% |
| !! | AGAAGCTAGAGTACCATTTT+TGG | - | contig164end:5607-5626 | MsG0080047999.01.T01:intron | 35.0% |
| !! | GATCTGATGAGATTTTTGGA+GGG | - | contig164end:5359-5378 | MsG0080047999.01.T01:CDS | 35.0% |
| !! | TAGAGTACCATTTTTGGACA+AGG | - | contig164end:5613-5632 | MsG0080047999.01.T01:intron | 35.0% |
| !! | TCTAAGGGCTTTATTAACTC+TGG | + | contig164end:4148-4167 | MsG0080047999.01.T01:intergenic | 35.0% |
| !!! | CATTTTGAAGTTTTTCCACC+TGG | - | contig164end:3979-3998 | MsG0080047999.01.T01:three_prime_UTR | 35.0% |
| !!! | CTTATGATCCTCTAGTTTTG+AGG | - | contig164end:4085-4104 | MsG0080047999.01.T01:CDS | 35.0% |
| ACAAAAGCTGCTAAGCAATG+GGG | - | contig164end:4354-4373 | MsG0080047999.01.T01:intron | 40.0% | |
| ACAACAGTTTCATTGTTGCG+AGG | - | contig164end:3766-3785 | MsG0080047999.01.T01:three_prime_UTR | 40.0% | |
| AGAAGTCACAGTCTAGATTG+TGG | - | contig164end:5121-5140 | MsG0080047999.01.T01:intron | 40.0% | |
| AGAGAATCCTTACCTACCTA+AGG | - | contig164end:5800-5819 | MsG0080047999.01.T01:intron | 40.0% | |
| AGCTAATATGAGACATGGCA+AGG | - | contig164end:6591-6610 | MsG0080047999.01.T01:CDS | 40.0% | |
| CAACAGTTTCATTGTTGCGA+GGG | - | contig164end:3767-3786 | MsG0080047999.01.T01:three_prime_UTR | 40.0% | |
| CACAAAAGCTGCTAAGCAAT+GGG | - | contig164end:4353-4372 | MsG0080047999.01.T01:intron | 40.0% | |
| CACAGAGAAAGCTATTGAGT+GGG | - | contig164end:6410-6429 | MsG0080047999.01.T01:intron | 40.0% | |
| CCAGATAGTAAAACACCGAA+CGG | + | contig164end:4282-4301 | MsG0080047999.01.T01:intergenic | 40.0% | |
| CGAAAAGATGTGGGCAAATA+GGG | - | contig164end:4662-4681 | MsG0080047999.01.T01:CDS | 40.0% | |
| CTCAAAATTGCGAAGAGTTG+CGG | - | contig164end:4913-4932 | MsG0080047999.01.T01:intron | 40.0% | |
| CTCATTCTGTGTAGGACTTA+AGG | - | contig164end:4389-4408 | MsG0080047999.01.T01:intron | 40.0% | |
| GCAAAAAGTTGCGGTCTAAT+AGG | - | contig164end:4792-4811 | MsG0080047999.01.T01:intron | 40.0% | |
| GCGAAAAGTTGCAGTCAAAT+AGG | - | contig164end:5053-5072 | MsG0080047999.01.T01:CDS | 40.0% | |
| GGCCTTTATTAAGGTTCTGT+TGG | + | contig164end:6316-6335 | MsG0080047999.01.T01:intergenic | 40.0% | |
| TCACTTCCTTGTACATTGGT+TGG | - | contig164end:3802-3821 | MsG0080047999.01.T01:three_prime_UTR | 40.0% | |
| TGGAGGTTTGGATTCTTCAT+TGG | - | contig164end:4299-4318 | MsG0080047999.01.T01:intron | 40.0% | |
| TTTATGTGGTCTATGCAGGA+TGG | - | contig164end:5202-5221 | MsG0080047999.01.T01:CDS | 40.0% | |
| ! | AAATGGGTGATTTCTGGAGA+AGG | - | contig164end:5337-5356 | MsG0080047999.01.T01:CDS | 40.0% |
| ! | AAGGCATTCCTCAAAACTAG+AGG | + | contig164end:4096-4115 | MsG0080047999.01.T01:intergenic | 40.0% |
| ! | ACTTCCTTGTACATTGGTTG+GGG | - | contig164end:3804-3823 | MsG0080047999.01.T01:three_prime_UTR | 40.0% |
| ! | CAAAGTCGCATCAGTGTTTT+TGG | + | contig164end:4940-4959 | MsG0080047999.01.T01:intergenic | 40.0% |
| ! | CACTTCCTTGTACATTGGTT+GGG | - | contig164end:3803-3822 | MsG0080047999.01.T01:three_prime_UTR | 40.0% |
| ! | TAGAGTACCTTAGGTAGGTA+AGG | + | contig164end:5810-5829 | MsG0080047999.01.T01:intergenic | 40.0% |
| ! | TAGAGTAGAGTACCTTAGGT+AGG | + | contig164end:5815-5834 | MsG0080047999.01.T01:intergenic | 40.0% |
| ! | TCGATTTGTAGAACTCAGCA+AGG | - | contig164end:6352-6371 | MsG0080047999.01.T01:CDS | 40.0% |
| ! | TTTGAGGAATGCCTTTGAGA+AGG | - | contig164end:4101-4120 | MsG0080047999.01.T01:CDS | 40.0% |
| !! | CTTCTTTGTTTGGTGCCTTA+TGG | + | contig164end:5396-5415 | MsG0080047999.01.T01:intergenic | 40.0% |
| !! | CTTTGAAAGGTTTTTCCCTC+AGG | - | contig164end:6187-6206 | MsG0080047999.01.T01:intron | 40.0% |
| !! | GGATCTGATGAGATTTTTGG+AGG | - | contig164end:5358-5377 | MsG0080047999.01.T01:CDS | 40.0% |
| !! | TTGGTAAGTGGAGTGTTGAA+AGG | + | contig164end:6143-6162 | MsG0080047999.01.T01:intergenic | 40.0% |
| !! | TTTTGGCAACTGAGTTGACT+TGG | + | contig164end:6509-6528 | MsG0080047999.01.T01:intergenic | 40.0% |
| !!! | TTCGGTGTTTTACTATCTGG+AGG | - | contig164end:4282-4301 | MsG0080047999.01.T01:intron | 40.0% |
| ACTTGTACTCGAGCAAAGAC+CGG | - | contig164end:4004-4023 | MsG0080047999.01.T01:three_prime_UTR | 45.0% | |
| AGAGGATCATAAGGGGTTGT+TGG | + | contig164end:4078-4097 | MsG0080047999.01.T01:intergenic | 45.0% | |
| ATTGTTGCGAGGGATGCTAT+AGG | - | contig164end:3777-3796 | MsG0080047999.01.T01:three_prime_UTR | 45.0% | |
| CAAATTCTGATGTGACCCCA+AGG | + | contig164end:4860-4879 | MsG0080047999.01.T01:intergenic | 45.0% | |
| CTACTTCTCTTCCAGCCTTA+AGG | + | contig164end:4553-4572 | MsG0080047999.01.T01:intergenic | 45.0% | |
| CTATTGAGTGGGATGCTTCT+TGG | - | contig164end:6421-6440 | MsG0080047999.01.T01:intron | 45.0% | |
| GCACAAAAGCTGCTAAGCAA+TGG | - | contig164end:4352-4371 | MsG0080047999.01.T01:intron | 45.0% | |
| GCACAGAGAAAGCTATTGAG+TGG | - | contig164end:6409-6428 | MsG0080047999.01.T01:intron | 45.0% | |
| GCGAAAAGATGTGGGCAAAT+AGG | - | contig164end:4661-4680 | MsG0080047999.01.T01:CDS | 45.0% | |
| GGAGTCAAATGGGTGATTTC+TGG | - | contig164end:5331-5350 | MsG0080047999.01.T01:CDS | 45.0% | |
| GTTGGCTATGGTTGGATTGA+TGG | - | contig164end:5957-5976 | MsG0080047999.01.T01:intron | 45.0% | |
| TAGTCCCCAACCAATGTACA+AGG | + | contig164end:3811-3830 | MsG0080047999.01.T01:intergenic | 45.0% | |
| TCAAGCAACCTTGATCCATC+TGG | - | contig164end:6444-6463 | MsG0080047999.01.T01:intron | 45.0% | |
| TGTACCATCTACGAAACTCC+CGG | + | contig164end:4026-4045 | MsG0080047999.01.T01:intergenic | 45.0% | |
| TTACCTTGCGGCATGTTTCT+TGG | + | contig164end:5426-5445 | MsG0080047999.01.T01:intergenic | 45.0% | |
| TTGTTGCGAGGGATGCTATA+GGG | - | contig164end:3778-3797 | MsG0080047999.01.T01:three_prime_UTR | 45.0% | |
| ! | TACATTGGTTGGGGACTAGA+TGG | - | contig164end:3813-3832 | MsG0080047999.01.T01:three_prime_UTR | 45.0% |
| ! | TTCAGTGATGGAGTTGGCTA+TGG | - | contig164end:5945-5964 | MsG0080047999.01.T01:intron | 45.0% |
| ! | TTGATGACTGATGTGCCGTT+CGG | - | contig164end:4264-4283 | MsG0080047999.01.T01:intron | 45.0% |
| !!! | CCGTTCGGTGTTTTACTATC+TGG | - | contig164end:4279-4298 | MsG0080047999.01.T01:intron | 45.0% |
| !!! | CTTCTCTGGCTCTACAGTTT+TGG | + | contig164end:6526-6545 | MsG0080047999.01.T01:intergenic | 45.0% |
| AAGACCGGGAGTTTCGTAGA+TGG | - | contig164end:4019-4038 | MsG0080047999.01.T01:exon | 50.0% | |
| AGCAGTCACTGCTAGATACC+TGG | - | contig164end:4326-4345 | MsG0080047999.01.T01:intron | 50.0% | |
| ATAGCCTCATTGAACCACGG+AGG | + | contig164end:4051-4070 | MsG0080047999.01.T01:intergenic | 50.0% | |
| CAATCCTCCGTGGTTCAATG+AGG | - | contig164end:4044-4063 | MsG0080047999.01.T01:CDS | 50.0% | |
| CAGAAGGAGCAGTTCAGTGA+TGG | - | contig164end:5933-5952 | MsG0080047999.01.T01:intron | 50.0% | |
| CCAAATGCTGCTCTTCCAGA+TGG | + | contig164end:6462-6481 | MsG0080047999.01.T01:intergenic | 50.0% | |
| CCATCTGGAAGAGCAGCATT+TGG | - | contig164end:6459-6478 | MsG0080047999.01.T01:intron | 50.0% | |
| CTGCTCTTCCAGATGGATCA+AGG | + | contig164end:6455-6474 | MsG0080047999.01.T01:intergenic | 50.0% | |
| CTTGTACTCGAGCAAAGACC+GGG | - | contig164end:4005-4024 | MsG0080047999.01.T01:three_prime_UTR | 50.0% | |
| GGATGGCATAGATGCAATCG+AGG | - | contig164end:5219-5238 | MsG0080047999.01.T01:CDS | 50.0% | |
| GGGGTCACTTCCTTGTACAT+TGG | - | contig164end:3798-3817 | MsG0080047999.01.T01:three_prime_UTR | 50.0% | |
| GTAGATGGTACAATCCTCCG+TGG | - | contig164end:4034-4053 | MsG0080047999.01.T01:exon | 50.0% | |
| TCACCAAGAAACATGCCGCA+AGG | - | contig164end:5420-5439 | MsG0080047999.01.T01:intron | 50.0% | |
| TCAGCAAGGCTAACAGTTCC+TGG | - | contig164end:6366-6385 | MsG0080047999.01.T01:intron | 50.0% | |
| TCTCTTCCAGCCTTAAGGTC+AGG | + | contig164end:4548-4567 | MsG0080047999.01.T01:intergenic | 50.0% | |
| TGTTGCGAGGGATGCTATAG+GGG | - | contig164end:3779-3798 | MsG0080047999.01.T01:three_prime_UTR | 50.0% | |
| TTAGGGTGCACCTGACCTTA+AGG | - | contig164end:4535-4554 | MsG0080047999.01.T01:intron | 50.0% | |
| TTGCTCGAGTACAAGTGACC+AGG | + | contig164end:4000-4019 | MsG0080047999.01.T01:intergenic | 50.0% | |
| ! | GAGCAGTTCAGTGATGGAGT+TGG | - | contig164end:5939-5958 | MsG0080047999.01.T01:intron | 50.0% |
| ! | GTGATGGAGTTGGCTATGGT+TGG | - | contig164end:5949-5968 | MsG0080047999.01.T01:intron | 50.0% |
| CATGCAACACTAGCTCCTCC+AGG | + | contig164end:6387-6406 | MsG0080047999.01.T01:intergenic | 55.0% | |
| CTCGAGTACAAGTGACCAGG+TGG | + | contig164end:3997-4016 | MsG0080047999.01.T01:intergenic | 55.0% | |
| GCAAGGCTAACAGTTCCTGG+AGG | - | contig164end:6369-6388 | MsG0080047999.01.T01:intron | 55.0% | |
| GTCACTGCTAGATACCTGGC+TGG | - | contig164end:4330-4349 | MsG0080047999.01.T01:intron | 55.0% | |
| ! | TAGCAGCTTTTGTGCCAGCC+AGG | + | contig164end:4347-4366 | MsG0080047999.01.T01:intergenic | 55.0% |
| GGTGCACCTGACCTTAAGGC+TGG | - | contig164end:4539-4558 | MsG0080047999.01.T01:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| contig164end | gene | 3723 | 6909 | 3723 | ID=MsG0080047999.01;Name=MsG0080047999.01 |
| contig164end | mRNA | 3723 | 6909 | 3723 | ID=MsG0080047999.01.T01;Parent=MsG0080047999.01;Name=MsG0080047999.01.T01;_AED=0.34;_eAED=0.44;_QI=0|0.75|0.84|0.92|1|1|13|313|444 |
| contig164end | exon | 6798 | 6909 | 6798 | ID=MsG0080047999.01.T01:exon:39350;Parent=MsG0080047999.01.T01 |
| contig164end | exon | 6510 | 6703 | 6510 | ID=MsG0080047999.01.T01:exon:39351;Parent=MsG0080047999.01.T01 |
| contig164end | exon | 6222 | 6383 | 6222 | ID=MsG0080047999.01.T01:exon:39352;Parent=MsG0080047999.01.T01 |
| contig164end | exon | 6013 | 6093 | 6013 | ID=MsG0080047999.01.T01:exon:39353;Parent=MsG0080047999.01.T01 |
| contig164end | exon | 5191 | 5412 | 5191 | ID=MsG0080047999.01.T01:exon:39354;Parent=MsG0080047999.01.T01 |
| contig164end | exon | 4953 | 5087 | 4953 | ID=MsG0080047999.01.T01:exon:39355;Parent=MsG0080047999.01.T01 |
| contig164end | exon | 4628 | 4714 | 4628 | ID=MsG0080047999.01.T01:exon:39356;Parent=MsG0080047999.01.T01 |
| contig164end | exon | 4424 | 4531 | 4424 | ID=MsG0080047999.01.T01:exon:39357;Parent=MsG0080047999.01.T01 |
| contig164end | exon | 3723 | 4269 | 3723 | ID=MsG0080047999.01.T01:exon:39358;Parent=MsG0080047999.01.T01 |
| contig164end | CDS | 6798 | 6909 | 6798 | ID=MsG0080047999.01.T01:cds;Parent=MsG0080047999.01.T01 |
| contig164end | CDS | 6510 | 6703 | 6510 | ID=MsG0080047999.01.T01:cds;Parent=MsG0080047999.01.T01 |
| contig164end | CDS | 6222 | 6383 | 6222 | ID=MsG0080047999.01.T01:cds;Parent=MsG0080047999.01.T01 |
| contig164end | CDS | 6013 | 6093 | 6013 | ID=MsG0080047999.01.T01:cds;Parent=MsG0080047999.01.T01 |
| contig164end | CDS | 5191 | 5412 | 5191 | ID=MsG0080047999.01.T01:cds;Parent=MsG0080047999.01.T01 |
| contig164end | CDS | 4953 | 5087 | 4953 | ID=MsG0080047999.01.T01:cds;Parent=MsG0080047999.01.T01 |
| contig164end | CDS | 4628 | 4714 | 4628 | ID=MsG0080047999.01.T01:cds;Parent=MsG0080047999.01.T01 |
| contig164end | CDS | 4424 | 4531 | 4424 | ID=MsG0080047999.01.T01:cds;Parent=MsG0080047999.01.T01 |
| contig164end | CDS | 4036 | 4269 | 4036 | ID=MsG0080047999.01.T01:cds;Parent=MsG0080047999.01.T01 |
| contig164end | three_prime_UTR | 3723 | 4035 | 3723 | ID=MsG0080047999.01.T01:three_prime_utr;Parent=MsG0080047999.01.T01 |
| Gene Sequence |
| Protein sequence |
