Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023767.01.T01 | XP_013447291.1 | 95.402 | 435 | 20 | 0 | 1 | 435 | 1 | 435 | 0 | 875 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023767.01.T01 | Q9STR4 | 75.291 | 429 | 97 | 3 | 10 | 429 | 16 | 444 | 0 | 662 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023767.01.T01 | A0A072TWR7 | 95.402 | 435 | 20 | 0 | 1 | 435 | 1 | 435 | 0.0 | 875 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0880046014.01 | MsG0480023767.01 | PPI |
| MsG0380014160.01 | MsG0480023767.01 | PPI |
| MsG0580029371.01 | MsG0480023767.01 | PPI |
| MsG0380012860.01 | MsG0480023767.01 | PPI |
| MsG0780039769.01 | MsG0480023767.01 | PPI |
| MsG0580024276.01 | MsG0480023767.01 | PPI |
| MsG0380014153.01 | MsG0480023767.01 | PPI |
| MsG0880043113.01 | MsG0480023767.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023767.01.T01 | MTR_8g101750 | 95.402 | 435 | 20 | 0 | 1 | 435 | 1 | 435 | 0.0 | 875 |
| MsG0480023767.01.T01 | MTR_8g101820 | 89.195 | 435 | 34 | 2 | 1 | 435 | 1 | 422 | 0.0 | 808 |
| MsG0480023767.01.T01 | MTR_6g091760 | 81.007 | 437 | 75 | 2 | 1 | 429 | 1 | 437 | 0.0 | 756 |
| MsG0480023767.01.T01 | MTR_5g015020 | 58.661 | 433 | 162 | 6 | 12 | 428 | 4 | 435 | 0.0 | 539 |
| MsG0480023767.01.T01 | MTR_4g097540 | 57.666 | 437 | 167 | 5 | 12 | 431 | 4 | 439 | 0.0 | 538 |
| MsG0480023767.01.T01 | MTR_3g103550 | 56.744 | 430 | 175 | 3 | 12 | 430 | 2 | 431 | 0.0 | 530 |
| MsG0480023767.01.T01 | MTR_8g098930 | 56.706 | 425 | 175 | 2 | 12 | 427 | 12 | 436 | 0.0 | 523 |
| MsG0480023767.01.T01 | MTR_8g028600 | 55.478 | 429 | 183 | 2 | 12 | 433 | 11 | 438 | 0.0 | 521 |
| MsG0480023767.01.T01 | MTR_7g079080 | 55.944 | 429 | 182 | 1 | 12 | 433 | 11 | 439 | 0.0 | 520 |
| MsG0480023767.01.T01 | MTR_6g463260 | 44.731 | 427 | 227 | 2 | 10 | 428 | 102 | 527 | 6.38e-145 | 424 |
| MsG0480023767.01.T01 | MTR_7g079080 | 55.689 | 334 | 148 | 0 | 100 | 433 | 1 | 334 | 1.20e-141 | 410 |
| MsG0480023767.01.T01 | MTR_5g011400 | 43.735 | 407 | 219 | 3 | 24 | 422 | 84 | 488 | 1.12e-130 | 386 |
| MsG0480023767.01.T01 | MTR_2g090730 | 56.757 | 74 | 28 | 1 | 77 | 150 | 31 | 100 | 3.04e-21 | 91.7 |
| MsG0480023767.01.T01 | MTR_8g091280 | 23.192 | 401 | 265 | 15 | 46 | 430 | 97 | 470 | 9.58e-17 | 82.4 |
| MsG0480023767.01.T01 | MTR_5g033230 | 24.272 | 309 | 213 | 12 | 83 | 373 | 103 | 408 | 3.98e-16 | 80.5 |
| MsG0480023767.01.T01 | MTR_5g033230 | 24.272 | 309 | 213 | 12 | 83 | 373 | 103 | 408 | 5.33e-16 | 80.5 |
| MsG0480023767.01.T01 | MTR_4g011820 | 23.101 | 316 | 211 | 11 | 115 | 423 | 92 | 382 | 2.25e-15 | 77.8 |
| MsG0480023767.01.T01 | MTR_2g090615 | 26.087 | 276 | 167 | 9 | 88 | 350 | 86 | 337 | 2.11e-14 | 75.1 |
| MsG0480023767.01.T01 | MTR_8g023140 | 22.102 | 371 | 261 | 14 | 78 | 425 | 149 | 514 | 5.56e-14 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023767.01.T01 | AT4G26200 | 75.291 | 429 | 97 | 3 | 10 | 429 | 16 | 444 | 0.0 | 662 |
| MsG0480023767.01.T01 | AT4G37770 | 59.122 | 433 | 167 | 2 | 12 | 434 | 4 | 436 | 0.0 | 553 |
| MsG0480023767.01.T01 | AT4G08040 | 57.674 | 430 | 175 | 1 | 12 | 434 | 2 | 431 | 0.0 | 546 |
| MsG0480023767.01.T01 | AT5G65800 | 57.944 | 428 | 170 | 3 | 11 | 428 | 3 | 430 | 0.0 | 533 |
| MsG0480023767.01.T01 | AT3G49700 | 58.042 | 429 | 168 | 3 | 11 | 428 | 3 | 430 | 0.0 | 528 |
| MsG0480023767.01.T01 | AT2G22810 | 55.734 | 436 | 182 | 3 | 10 | 434 | 2 | 437 | 0.0 | 525 |
| MsG0480023767.01.T01 | AT3G61510 | 56.161 | 422 | 175 | 2 | 12 | 426 | 11 | 429 | 0.0 | 524 |
| MsG0480023767.01.T01 | AT4G11280 | 55.916 | 431 | 183 | 1 | 4 | 427 | 7 | 437 | 0.0 | 518 |
| MsG0480023767.01.T01 | AT1G01480 | 51.716 | 437 | 201 | 3 | 1 | 427 | 1 | 437 | 2.11e-172 | 493 |
| MsG0480023767.01.T01 | AT5G51690 | 44.028 | 427 | 230 | 3 | 10 | 428 | 67 | 492 | 1.14e-138 | 407 |
| MsG0480023767.01.T01 | AT1G01480 | 52.568 | 331 | 154 | 2 | 100 | 427 | 1 | 331 | 4.29e-134 | 391 |
| MsG0480023767.01.T01 | AT1G62960 | 43.210 | 405 | 227 | 3 | 22 | 423 | 143 | 547 | 2.24e-127 | 380 |
| MsG0480023767.01.T01 | AT5G51690 | 46.839 | 348 | 184 | 1 | 81 | 428 | 23 | 369 | 3.79e-124 | 365 |
| MsG0480023767.01.T01 | AT4G23600 | 25.627 | 359 | 230 | 13 | 88 | 433 | 78 | 412 | 4.13e-18 | 86.3 |
| MsG0480023767.01.T01 | AT5G36160 | 24.022 | 358 | 231 | 13 | 83 | 425 | 80 | 411 | 1.28e-17 | 85.1 |
| MsG0480023767.01.T01 | AT1G23310 | 25.271 | 277 | 189 | 9 | 83 | 344 | 103 | 376 | 1.45e-17 | 85.1 |
| MsG0480023767.01.T01 | AT1G23310 | 25.271 | 277 | 189 | 9 | 83 | 344 | 103 | 376 | 1.74e-17 | 85.1 |
| MsG0480023767.01.T01 | AT1G72330 | 22.691 | 379 | 265 | 14 | 73 | 428 | 160 | 533 | 3.72e-17 | 84.0 |
| MsG0480023767.01.T01 | AT1G70580 | 24.910 | 277 | 190 | 10 | 83 | 344 | 103 | 376 | 1.01e-16 | 82.4 |
| MsG0480023767.01.T01 | AT1G70580 | 24.910 | 277 | 190 | 10 | 83 | 344 | 103 | 376 | 1.01e-16 | 82.4 |
| MsG0480023767.01.T01 | AT1G70580 | 24.910 | 277 | 190 | 10 | 83 | 344 | 103 | 376 | 1.01e-16 | 82.4 |
| MsG0480023767.01.T01 | AT1G70580 | 24.910 | 277 | 190 | 10 | 83 | 344 | 103 | 376 | 1.01e-16 | 82.4 |
| MsG0480023767.01.T01 | AT1G72330 | 23.596 | 267 | 190 | 8 | 73 | 328 | 160 | 423 | 2.27e-16 | 81.3 |
| MsG0480023767.01.T01 | AT1G72330 | 21.939 | 392 | 265 | 14 | 73 | 428 | 160 | 546 | 2.13e-15 | 78.6 |
| MsG0480023767.01.T01 | AT1G80360 | 23.485 | 396 | 250 | 15 | 41 | 424 | 28 | 382 | 3.36e-15 | 77.4 |
| MsG0480023767.01.T01 | AT1G80360 | 23.485 | 396 | 250 | 15 | 41 | 424 | 28 | 382 | 3.36e-15 | 77.4 |
| MsG0480023767.01.T01 | AT1G80360 | 23.485 | 396 | 250 | 15 | 41 | 424 | 28 | 382 | 3.36e-15 | 77.4 |
| MsG0480023767.01.T01 | AT1G80360 | 23.485 | 396 | 250 | 15 | 41 | 424 | 28 | 382 | 3.36e-15 | 77.4 |
| MsG0480023767.01.T01 | AT2G20610 | 24.507 | 355 | 223 | 14 | 88 | 425 | 109 | 435 | 3.68e-15 | 77.8 |
| MsG0480023767.01.T01 | AT4G23600 | 25.455 | 330 | 211 | 12 | 117 | 433 | 1 | 308 | 5.75e-15 | 75.9 |
| MsG0480023767.01.T01 | AT1G17290 | 22.259 | 301 | 214 | 11 | 78 | 362 | 168 | 464 | 1.30e-14 | 76.3 |
| MsG0480023767.01.T01 | AT4G23600 | 25.472 | 318 | 203 | 11 | 88 | 392 | 78 | 374 | 1.49e-14 | 75.5 |
| MsG0480023767.01.T01 | AT1G77670 | 24.340 | 341 | 233 | 11 | 87 | 424 | 116 | 434 | 1.50e-14 | 75.9 |
| MsG0480023767.01.T01 | AT2G20610 | 25.461 | 271 | 167 | 9 | 88 | 345 | 109 | 357 | 3.98e-14 | 74.3 |
| MsG0480023767.01.T01 | AT4G28410 | 26.619 | 278 | 163 | 11 | 88 | 350 | 111 | 362 | 9.30e-12 | 67.0 |
| MsG0480023767.01.T01 | AT4G28410 | 26.642 | 274 | 168 | 10 | 88 | 350 | 111 | 362 | 1.05e-11 | 67.0 |
| MsG0480023767.01.T01 | AT4G23590 | 23.851 | 348 | 234 | 12 | 88 | 425 | 78 | 404 | 2.89e-11 | 65.5 |
| MsG0480023767.01.T01 | AT5G53970 | 23.416 | 363 | 233 | 14 | 88 | 433 | 76 | 410 | 4.91e-11 | 64.7 |
Find 88 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAATATATTAAGATTAAT+AGG | 0.143027 | 4:-89571582 | MsG0480023767.01.T01:CDS |
| GCGGTGATGACTATTCTTTC+TGG | 0.188225 | 4:+89572532 | None:intergenic |
| GTGATCAACCTGGTTGGTTT+AGG | 0.197998 | 4:-89571354 | MsG0480023767.01.T01:CDS |
| TGATCAACCTGGTTGGTTTA+GGG | 0.271865 | 4:-89571353 | MsG0480023767.01.T01:CDS |
| AACTTCATGGCTAGCCGAAC+AGG | 0.317741 | 4:-89571274 | MsG0480023767.01.T01:CDS |
| ACAAACCCTTCAAACCCTTT+AGG | 0.351926 | 4:-89571949 | MsG0480023767.01.T01:CDS |
| GTCAACTAAGGAAGGTGAAT+TGG | 0.354677 | 4:-89571440 | MsG0480023767.01.T01:CDS |
| GATGAATTAACTAACTCTTC+AGG | 0.373544 | 4:-89572866 | MsG0480023767.01.T01:CDS |
| TGTGCAGGTTTCATTTGATT+TGG | 0.377676 | 4:-89572701 | MsG0480023767.01.T01:intron |
| GAAAACTCACCCTACTTTGC+TGG | 0.379915 | 4:-89572917 | MsG0480023767.01.T01:CDS |
| GAGTTAGTTAATTCATCATA+AGG | 0.381161 | 4:+89572872 | None:intergenic |
| GATTCTTACCCTGGATAGTA+AGG | 0.392460 | 4:+89572436 | None:intergenic |
| TATAGTCTCTCTAAAGATCT+TGG | 0.393148 | 4:-89571748 | MsG0480023767.01.T01:CDS |
| CTCATTAGCCGCAGTTGCTC+CGG | 0.395906 | 4:+89572510 | None:intergenic |
| ACATCTTCTTTGTCCCTGTT+CGG | 0.397573 | 4:+89571260 | None:intergenic |
| GAAATATATTAAGATTAATA+GGG | 0.399795 | 4:-89571581 | MsG0480023767.01.T01:CDS |
| AGGAACAAGCAAGGCATCGC+CGG | 0.403862 | 4:+89572462 | None:intergenic |
| CTGAAACCATTATAATCCTC+AGG | 0.404711 | 4:+89572655 | None:intergenic |
| AAGTGCAATGGCAAGTTTCA+TGG | 0.405411 | 4:-89572587 | MsG0480023767.01.T01:CDS |
| GAGCACCCTGAGGATTATAA+TGG | 0.406179 | 4:-89572661 | MsG0480023767.01.T01:CDS |
| GTTCCTACCCCTTACTATCC+AGG | 0.407257 | 4:-89572445 | MsG0480023767.01.T01:CDS |
| GGAAAGAATACGTAACTTCA+TGG | 0.412992 | 4:-89571287 | MsG0480023767.01.T01:CDS |
| TTTGACCTGTTGCAGTGAAT+TGG | 0.417511 | 4:+89572057 | None:intergenic |
| CGTTGAACTGTTATACCTAA+AGG | 0.428028 | 4:+89571934 | None:intergenic |
| GTTGAACTGTTATACCTAAA+GGG | 0.430255 | 4:+89571935 | None:intergenic |
| GTTATACCTAAAGGGTTTGA+AGG | 0.431593 | 4:+89571943 | None:intergenic |
| AATTTATTCATACAATGATA+AGG | 0.432216 | 4:-89571701 | MsG0480023767.01.T01:CDS |
| AGATATGAAATGATTATTGA+AGG | 0.438836 | 4:-89571544 | MsG0480023767.01.T01:CDS |
| TAGTGCCAATTCACTGCAAC+AGG | 0.441325 | 4:-89572062 | MsG0480023767.01.T01:CDS |
| CTGAAATTGAATATATCTCC+AGG | 0.445529 | 4:-89571391 | MsG0480023767.01.T01:CDS |
| GTAGGTTTGATAGAGACTTA+AGG | 0.446910 | 4:-89572104 | MsG0480023767.01.T01:intron |
| GGAACAAGCAAGGCATCGCC+GGG | 0.449445 | 4:+89572463 | None:intergenic |
| GCATTATTTCAAGACTATCA+TGG | 0.449699 | 4:-89572625 | MsG0480023767.01.T01:CDS |
| ATTGAAGGCTTGAAAAGTGT+TGG | 0.452654 | 4:-89571529 | MsG0480023767.01.T01:CDS |
| TTAGTTGACTCCTTCAAAAG+TGG | 0.458012 | 4:+89571454 | None:intergenic |
| GAGTGTTTGAAAGGGAATGC+AGG | 0.465675 | 4:-89571502 | MsG0480023767.01.T01:CDS |
| AGTTAGTTAATTCATCATAA+GGG | 0.468946 | 4:+89572873 | None:intergenic |
| AGGAAGGTGAATTGGAACTT+TGG | 0.476087 | 4:-89571432 | MsG0480023767.01.T01:CDS |
| ACAAACTTTGGATGTTGCAT+TGG | 0.480931 | 4:-89571308 | MsG0480023767.01.T01:CDS |
| GGTCTACCAGGTTTCAGAGT+TGG | 0.483669 | 4:-89571727 | MsG0480023767.01.T01:CDS |
| AAATATGAGTGAACAAACTT+TGG | 0.486245 | 4:-89571320 | MsG0480023767.01.T01:CDS |
| CTCTTCAGGAGTTATACAAA+TGG | 0.488431 | 4:-89572852 | MsG0480023767.01.T01:CDS |
| AGAGACTTAAGGTGGAGAAC+TGG | 0.493331 | 4:-89572093 | MsG0480023767.01.T01:CDS |
| CATCTCAGACGAAATCTACT+CGG | 0.501179 | 4:-89571860 | MsG0480023767.01.T01:CDS |
| GGCTTTCCATCCAGCAAAGT+AGG | 0.501359 | 4:+89572907 | None:intergenic |
| TCTAAAGATCTTGGTCTACC+AGG | 0.510586 | 4:-89571739 | MsG0480023767.01.T01:CDS |
| ACAGGGACAAAGAAGATGTA+AGG | 0.520984 | 4:-89571256 | None:intergenic |
| TTGTGTTTGTGAAGATATCA+TGG | 0.525948 | 4:+89571645 | None:intergenic |
| GCCGGGGTTTGCAAGAATGA+AGG | 0.526652 | 4:+89572480 | None:intergenic |
| ACCTTCATTCTTGCAAACCC+CGG | 0.529279 | 4:-89572481 | MsG0480023767.01.T01:CDS |
| ATTGCAATTTCTGACACTCA+TGG | 0.531513 | 4:-89572941 | MsG0480023767.01.T01:CDS |
| TCTTCAGGAGTTATACAAAT+GGG | 0.535454 | 4:-89572851 | MsG0480023767.01.T01:CDS |
| GTCATTGTGATCAACCTGGT+TGG | 0.538197 | 4:-89571360 | MsG0480023767.01.T01:CDS |
| TTCCTACCCCTTACTATCCA+GGG | 0.542899 | 4:-89572444 | MsG0480023767.01.T01:intron |
| TTATACCTAAAGGGTTTGAA+GGG | 0.548536 | 4:+89571944 | None:intergenic |
| ATTCTTACCCTGGATAGTAA+GGG | 0.548613 | 4:+89572437 | None:intergenic |
| TAAGCTGCTTCTAAAGCTTG+AGG | 0.550801 | 4:+89572018 | None:intergenic |
| AGACGAAATCTACTCGGGCT+CGG | 0.552466 | 4:-89571854 | MsG0480023767.01.T01:CDS |
| GGTTTGATAGAGACTTAAGG+TGG | 0.553899 | 4:-89572101 | MsG0480023767.01.T01:CDS |
| TTGAAGGAGTCAACTAAGGA+AGG | 0.555608 | 4:-89571448 | MsG0480023767.01.T01:CDS |
| AGATTTCGTCTGAGATGAGG+TGG | 0.558059 | 4:+89571866 | None:intergenic |
| GTTGGAATTGAGTGTTTGAA+AGG | 0.569169 | 4:-89571511 | MsG0480023767.01.T01:CDS |
| ACTCACCCTACTTTGCTGGA+TGG | 0.572647 | 4:-89572913 | MsG0480023767.01.T01:CDS |
| GGCTAATATGCTATCAGACA+AGG | 0.573142 | 4:-89571614 | MsG0480023767.01.T01:CDS |
| TTGGAATTGAGTGTTTGAAA+GGG | 0.574213 | 4:-89571510 | MsG0480023767.01.T01:CDS |
| AGTTTCATGGAACAAATAAG+AGG | 0.575774 | 4:-89572574 | MsG0480023767.01.T01:CDS |
| GCTTTCCATCCAGCAAAGTA+GGG | 0.580141 | 4:+89572908 | None:intergenic |
| AGGAGTTATACAAATGGGAC+TGG | 0.580638 | 4:-89572846 | MsG0480023767.01.T01:CDS |
| TAAATCATTCAGAAGTGCAA+TGG | 0.583118 | 4:-89572599 | MsG0480023767.01.T01:CDS |
| TCTTGTCATTGTGATCAACC+TGG | 0.587957 | 4:-89571364 | MsG0480023767.01.T01:CDS |
| ATTAGCCGCAGTTGCTCCGG+CGG | 0.589538 | 4:+89572513 | None:intergenic |
| CATCACCGCCGGAGCAACTG+CGG | 0.595084 | 4:-89572518 | MsG0480023767.01.T01:CDS |
| ATCTCAGACGAAATCTACTC+GGG | 0.596514 | 4:-89571859 | MsG0480023767.01.T01:CDS |
| TTCTTACCCTGGATAGTAAG+GGG | 0.604583 | 4:+89572438 | None:intergenic |
| TCAATGAACATGAAAGTGAG+TGG | 0.607414 | 4:-89571982 | MsG0480023767.01.T01:CDS |
| ATTGTTCCAACTCTGAAACC+TGG | 0.608322 | 4:+89571721 | None:intergenic |
| TGAAACCATTATAATCCTCA+GGG | 0.627551 | 4:+89572656 | None:intergenic |
| ACTTCATGGCTAGCCGAACA+GGG | 0.629105 | 4:-89571273 | MsG0480023767.01.T01:CDS |
| GAAAGAATAGTCATCACCGC+CGG | 0.631099 | 4:-89572529 | MsG0480023767.01.T01:CDS |
| AGTAGATTTCGTCTGAGATG+AGG | 0.631875 | 4:+89571863 | None:intergenic |
| TACCCTGGATAGTAAGGGGT+AGG | 0.633960 | 4:+89572442 | None:intergenic |
| TGAAATTGAATATATCTCCA+GGG | 0.640695 | 4:-89571390 | MsG0480023767.01.T01:CDS |
| TTCATGGAACAAATAAGAGG+TGG | 0.647531 | 4:-89572571 | MsG0480023767.01.T01:CDS |
| GTAAGGGGTAGGAACAAGCA+AGG | 0.672268 | 4:+89572453 | None:intergenic |
| AAACAGACCCTAAACCAACC+AGG | 0.685588 | 4:+89571346 | None:intergenic |
| TCACAATGACAAGAACACCC+TGG | 0.704106 | 4:+89571373 | None:intergenic |
| GAACAAGCAAGGCATCGCCG+GGG | 0.751656 | 4:+89572464 | None:intergenic |
| GTACTTGAAAGAGCACCCTG+AGG | 0.755804 | 4:-89572671 | MsG0480023767.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAATGAACTAATTAATT+AGG | + | Chr4:89571485-89571504 | None:intergenic | 10.0% |
| !! | AGAAATATATTAAGATTAAT+AGG | - | Chr4:89572659-89572678 | MsG0480023767.01.T01:CDS | 10.0% |
| !! | GAAATATATTAAGATTAATA+GGG | - | Chr4:89572660-89572679 | MsG0480023767.01.T01:CDS | 10.0% |
| !! | TTAATTAGTTCATTAATTAA+TGG | - | Chr4:89571487-89571506 | MsG0480023767.01.T01:CDS | 10.0% |
| !! | AATTTATTCATACAATGATA+AGG | - | Chr4:89572540-89572559 | MsG0480023767.01.T01:CDS | 15.0% |
| !!! | ATATAATCATACTTGATTTT+CGG | + | Chr4:89571421-89571440 | None:intergenic | 15.0% |
| !! | AGATATGAAATGATTATTGA+AGG | - | Chr4:89572697-89572716 | MsG0480023767.01.T01:CDS | 20.0% |
| !! | AGTTAGTTAATTCATCATAA+GGG | + | Chr4:89571371-89571390 | None:intergenic | 20.0% |
| !!! | AGTTCATTAATTAATGGTTT+TGG | - | Chr4:89571493-89571512 | MsG0480023767.01.T01:CDS | 20.0% |
| ! | AAATATGAGTGAACAAACTT+TGG | - | Chr4:89572921-89572940 | MsG0480023767.01.T01:CDS | 25.0% |
| ! | GAGTTAGTTAATTCATCATA+AGG | + | Chr4:89571372-89571391 | None:intergenic | 25.0% |
| ! | TATATTAATGTGTATTGTGC+AGG | - | Chr4:89571525-89571544 | MsG0480023767.01.T01:CDS | 25.0% |
| ! | TGAAATTGAATATATCTCCA+GGG | - | Chr4:89572851-89572870 | MsG0480023767.01.T01:CDS | 25.0% |
| !! | TTAATTTTGAATAACTCCTG+AGG | + | Chr4:89571932-89571951 | None:intergenic | 25.0% |
| !!! | ATTTTACTTGAGAGTGTTTA+TGG | + | Chr4:89571984-89572003 | None:intergenic | 25.0% |
| AGTTTCATGGAACAAATAAG+AGG | - | Chr4:89571667-89571686 | MsG0480023767.01.T01:CDS | 30.0% | |
| CTGAAATTGAATATATCTCC+AGG | - | Chr4:89572850-89572869 | MsG0480023767.01.T01:CDS | 30.0% | |
| GATGAATTAACTAACTCTTC+AGG | - | Chr4:89571375-89571394 | MsG0480023767.01.T01:CDS | 30.0% | |
| GCATTATTTCAAGACTATCA+TGG | - | Chr4:89571616-89571635 | MsG0480023767.01.T01:CDS | 30.0% | |
| GTTGAACTGTTATACCTAAA+GGG | + | Chr4:89572309-89572328 | None:intergenic | 30.0% | |
| TCTTCAGGAGTTATACAAAT+GGG | - | Chr4:89571390-89571409 | MsG0480023767.01.T01:CDS | 30.0% | |
| TGAAACCATTATAATCCTCA+GGG | + | Chr4:89571588-89571607 | None:intergenic | 30.0% | |
| TTATACCTAAAGGGTTTGAA+GGG | + | Chr4:89572300-89572319 | None:intergenic | 30.0% | |
| TTGGAATTGAGTGTTTGAAA+GGG | - | Chr4:89572731-89572750 | MsG0480023767.01.T01:intron | 30.0% | |
| TTGTGTTTGTGAAGATATCA+TGG | + | Chr4:89572599-89572618 | None:intergenic | 30.0% | |
| ! | ATCATAAGGGTTTTCATCAT+AGG | + | Chr4:89571358-89571377 | None:intergenic | 30.0% |
| ! | TAAATCATTCAGAAGTGCAA+TGG | - | Chr4:89571642-89571661 | MsG0480023767.01.T01:CDS | 30.0% |
| ! | TATAGTCTCTCTAAAGATCT+TGG | - | Chr4:89572493-89572512 | MsG0480023767.01.T01:CDS | 30.0% |
| ! | TATTTTCATCAACTATCCTC+AGG | - | Chr4:89571913-89571932 | MsG0480023767.01.T01:CDS | 30.0% |
| ! | TCTTTTGCTTGTACTTTTGT+AGG | - | Chr4:89572119-89572138 | MsG0480023767.01.T01:intron | 30.0% |
| ! | TTCACAAACACAACAGTTTT+TGG | - | Chr4:89572606-89572625 | MsG0480023767.01.T01:CDS | 30.0% |
| ACAAACTTTGGATGTTGCAT+TGG | - | Chr4:89572933-89572952 | MsG0480023767.01.T01:CDS | 35.0% | |
| ATATATAGTCTACGCAAGCA+TGG | + | Chr4:89572080-89572099 | None:intergenic | 35.0% | |
| ATTCTTACCCTGGATAGTAA+GGG | + | Chr4:89571807-89571826 | None:intergenic | 35.0% | |
| ATTGCAATTTCTGACACTCA+TGG | - | Chr4:89571300-89571319 | MsG0480023767.01.T01:CDS | 35.0% | |
| CGTTGAACTGTTATACCTAA+AGG | + | Chr4:89572310-89572329 | None:intergenic | 35.0% | |
| CTCTTCAGGAGTTATACAAA+TGG | - | Chr4:89571389-89571408 | MsG0480023767.01.T01:CDS | 35.0% | |
| CTGAAACCATTATAATCCTC+AGG | + | Chr4:89571589-89571608 | None:intergenic | 35.0% | |
| GGAAAGAATACGTAACTTCA+TGG | - | Chr4:89572954-89572973 | MsG0480023767.01.T01:CDS | 35.0% | |
| GTAGGTTTGATAGAGACTTA+AGG | - | Chr4:89572137-89572156 | MsG0480023767.01.T01:intron | 35.0% | |
| GTTATACCTAAAGGGTTTGA+AGG | + | Chr4:89572301-89572320 | None:intergenic | 35.0% | |
| GTTGGAATTGAGTGTTTGAA+AGG | - | Chr4:89572730-89572749 | MsG0480023767.01.T01:intron | 35.0% | |
| GTTGTTTATCCAAACATAGC+CGG | + | Chr4:89571845-89571864 | None:intergenic | 35.0% | |
| TCAATGAACATGAAAGTGAG+TGG | - | Chr4:89572259-89572278 | MsG0480023767.01.T01:intron | 35.0% | |
| TGTGCAGGTTTCATTTGATT+TGG | - | Chr4:89571540-89571559 | MsG0480023767.01.T01:CDS | 35.0% | |
| TTCATGGAACAAATAAGAGG+TGG | - | Chr4:89571670-89571689 | MsG0480023767.01.T01:CDS | 35.0% | |
| ! | ATTGAAGGCTTGAAAAGTGT+TGG | - | Chr4:89572712-89572731 | MsG0480023767.01.T01:intron | 35.0% |
| ! | TTAGTTGACTCCTTCAAAAG+TGG | + | Chr4:89572790-89572809 | None:intergenic | 35.0% |
| !! | ACTTTTGAAGGAGTCAACTA+AGG | - | Chr4:89572789-89572808 | MsG0480023767.01.T01:intron | 35.0% |
| !! | GAATTTGAGTCCACTTTTGA+AGG | - | Chr4:89572777-89572796 | MsG0480023767.01.T01:intron | 35.0% |
| AAGTGCAATGGCAAGTTTCA+TGG | - | Chr4:89571654-89571673 | MsG0480023767.01.T01:CDS | 40.0% | |
| AATGAAGCTAGCTAGCTAGA+AGG | + | Chr4:89572022-89572041 | None:intergenic | 40.0% | |
| ACAAACCCTTCAAACCCTTT+AGG | - | Chr4:89572292-89572311 | MsG0480023767.01.T01:intron | 40.0% | |
| ACATCTTCTTTGTCCCTGTT+CGG | + | Chr4:89572984-89573003 | None:intergenic | 40.0% | |
| AGGAAGGTGAATTGGAACTT+TGG | - | Chr4:89572809-89572828 | MsG0480023767.01.T01:intron | 40.0% | |
| AGGAGTTATACAAATGGGAC+TGG | - | Chr4:89571395-89571414 | MsG0480023767.01.T01:CDS | 40.0% | |
| ATCTCAGACGAAATCTACTC+GGG | - | Chr4:89572382-89572401 | MsG0480023767.01.T01:intron | 40.0% | |
| CATCTCAGACGAAATCTACT+CGG | - | Chr4:89572381-89572400 | MsG0480023767.01.T01:intron | 40.0% | |
| GAATCAAGCACCATACAATC+CGG | - | Chr4:89571823-89571842 | MsG0480023767.01.T01:CDS | 40.0% | |
| GATTCTTACCCTGGATAGTA+AGG | + | Chr4:89571808-89571827 | None:intergenic | 40.0% | |
| GGCTAATATGCTATCAGACA+AGG | - | Chr4:89572627-89572646 | MsG0480023767.01.T01:CDS | 40.0% | |
| GGTTTGATAGAGACTTAAGG+TGG | - | Chr4:89572140-89572159 | MsG0480023767.01.T01:intron | 40.0% | |
| GTCAACTAAGGAAGGTGAAT+TGG | - | Chr4:89572801-89572820 | MsG0480023767.01.T01:intron | 40.0% | |
| TCTAAAGATCTTGGTCTACC+AGG | - | Chr4:89572502-89572521 | MsG0480023767.01.T01:CDS | 40.0% | |
| TCTTGTCATTGTGATCAACC+TGG | - | Chr4:89572877-89572896 | MsG0480023767.01.T01:CDS | 40.0% | |
| TTCTTACCCTGGATAGTAAG+GGG | + | Chr4:89571806-89571825 | None:intergenic | 40.0% | |
| TTGAAGGAGTCAACTAAGGA+AGG | - | Chr4:89572793-89572812 | MsG0480023767.01.T01:intron | 40.0% | |
| TTTGACCTGTTGCAGTGAAT+TGG | + | Chr4:89572187-89572206 | None:intergenic | 40.0% | |
| ! | AGTAGATTTCGTCTGAGATG+AGG | + | Chr4:89572381-89572400 | None:intergenic | 40.0% |
| !! | ATTGTTCCAACTCTGAAACC+TGG | + | Chr4:89572523-89572542 | None:intergenic | 40.0% |
| !! | GGAATGCAGGATTGTTTTGT+TGG | - | Chr4:89572752-89572771 | MsG0480023767.01.T01:intron | 40.0% |
| !! | TAAGCTGCTTCTAAAGCTTG+AGG | + | Chr4:89572226-89572245 | None:intergenic | 40.0% |
| !! | TGATCAACCTGGTTGGTTTA+GGG | - | Chr4:89572888-89572907 | MsG0480023767.01.T01:CDS | 40.0% |
| AAACAGACCCTAAACCAACC+AGG | + | Chr4:89572898-89572917 | None:intergenic | 45.0% | |
| ACCTTCATTCTTGCAAACCC+CGG | - | Chr4:89571760-89571779 | MsG0480023767.01.T01:CDS | 45.0% | |
| AGAGACTTAAGGTGGAGAAC+TGG | - | Chr4:89572148-89572167 | MsG0480023767.01.T01:intron | 45.0% | |
| ATGGTGCTTGATTCTTACCC+TGG | + | Chr4:89571817-89571836 | None:intergenic | 45.0% | |
| CCAAACATAGCCGGATTGTA+TGG | + | Chr4:89571836-89571855 | None:intergenic | 45.0% | |
| CCATACAATCCGGCTATGTT+TGG | - | Chr4:89571833-89571852 | MsG0480023767.01.T01:CDS | 45.0% | |
| GAAAACTCACCCTACTTTGC+TGG | - | Chr4:89571324-89571343 | MsG0480023767.01.T01:CDS | 45.0% | |
| GAAAGAATAGTCATCACCGC+CGG | - | Chr4:89571712-89571731 | MsG0480023767.01.T01:CDS | 45.0% | |
| GAGCACCCTGAGGATTATAA+TGG | - | Chr4:89571580-89571599 | MsG0480023767.01.T01:CDS | 45.0% | |
| GAGTGTTTGAAAGGGAATGC+AGG | - | Chr4:89572739-89572758 | MsG0480023767.01.T01:intron | 45.0% | |
| GCGGTGATGACTATTCTTTC+TGG | + | Chr4:89571712-89571731 | None:intergenic | 45.0% | |
| GCTTTCCATCCAGCAAAGTA+GGG | + | Chr4:89571336-89571355 | None:intergenic | 45.0% | |
| GTCATTGTGATCAACCTGGT+TGG | - | Chr4:89572881-89572900 | MsG0480023767.01.T01:CDS | 45.0% | |
| TAGTGCCAATTCACTGCAAC+AGG | - | Chr4:89572179-89572198 | MsG0480023767.01.T01:intron | 45.0% | |
| TCACAATGACAAGAACACCC+TGG | + | Chr4:89572871-89572890 | None:intergenic | 45.0% | |
| TTCCTACCCCTTACTATCCA+GGG | - | Chr4:89571797-89571816 | MsG0480023767.01.T01:CDS | 45.0% | |
| ! | AGATTTCGTCTGAGATGAGG+TGG | + | Chr4:89572378-89572397 | None:intergenic | 45.0% |
| !! | GTGATCAACCTGGTTGGTTT+AGG | - | Chr4:89572887-89572906 | MsG0480023767.01.T01:CDS | 45.0% |
| ACTCACCCTACTTTGCTGGA+TGG | - | Chr4:89571328-89571347 | MsG0480023767.01.T01:CDS | 50.0% | |
| AGACGAAATCTACTCGGGCT+CGG | - | Chr4:89572387-89572406 | MsG0480023767.01.T01:intron | 50.0% | |
| GGCTTTCCATCCAGCAAAGT+AGG | + | Chr4:89571337-89571356 | None:intergenic | 50.0% | |
| GGTCTACCAGGTTTCAGAGT+TGG | - | Chr4:89572514-89572533 | MsG0480023767.01.T01:CDS | 50.0% | |
| GTAAGGGGTAGGAACAAGCA+AGG | + | Chr4:89571791-89571810 | None:intergenic | 50.0% | |
| GTTCCTACCCCTTACTATCC+AGG | - | Chr4:89571796-89571815 | MsG0480023767.01.T01:CDS | 50.0% | |
| TACCCTGGATAGTAAGGGGT+AGG | + | Chr4:89571802-89571821 | None:intergenic | 50.0% | |
| ! | AACTTCATGGCTAGCCGAAC+AGG | - | Chr4:89572967-89572986 | MsG0480023767.01.T01:CDS | 50.0% |
| ! | ACTTCATGGCTAGCCGAACA+GGG | - | Chr4:89572968-89572987 | MsG0480023767.01.T01:CDS | 50.0% |
| !! | GTACTTGAAAGAGCACCCTG+AGG | - | Chr4:89571570-89571589 | MsG0480023767.01.T01:CDS | 50.0% |
| CTCATTAGCCGCAGTTGCTC+CGG | + | Chr4:89571734-89571753 | None:intergenic | 55.0% | |
| GCCGGGGTTTGCAAGAATGA+AGG | + | Chr4:89571764-89571783 | None:intergenic | 55.0% | |
| !! | AGGAACAAGCAAGGCATCGC+CGG | + | Chr4:89571782-89571801 | None:intergenic | 55.0% |
| ATTAGCCGCAGTTGCTCCGG+CGG | + | Chr4:89571731-89571750 | None:intergenic | 60.0% | |
| !! | GAACAAGCAAGGCATCGCCG+GGG | + | Chr4:89571780-89571799 | None:intergenic | 60.0% |
| !! | GGAACAAGCAAGGCATCGCC+GGG | + | Chr4:89571781-89571800 | None:intergenic | 60.0% |
| CATCACCGCCGGAGCAACTG+CGG | - | Chr4:89571723-89571742 | MsG0480023767.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 89571258 | 89573005 | 89571258 | ID=MsG0480023767.01;Name=MsG0480023767.01 |
| Chr4 | mRNA | 89571258 | 89573005 | 89571258 | ID=MsG0480023767.01.T01;Parent=MsG0480023767.01;Name=MsG0480023767.01.T01;_AED=0.27;_eAED=0.27;_QI=0|0|0|1|1|1|3|0|435 |
| Chr4 | exon | 89572835 | 89573005 | 89572835 | ID=MsG0480023767.01.T01:exon:3191;Parent=MsG0480023767.01.T01 |
| Chr4 | exon | 89572445 | 89572716 | 89572445 | ID=MsG0480023767.01.T01:exon:3190;Parent=MsG0480023767.01.T01 |
| Chr4 | exon | 89571258 | 89572122 | 89571258 | ID=MsG0480023767.01.T01:exon:3189;Parent=MsG0480023767.01.T01 |
| Chr4 | CDS | 89572835 | 89573005 | 89572835 | ID=MsG0480023767.01.T01:cds;Parent=MsG0480023767.01.T01 |
| Chr4 | CDS | 89572445 | 89572716 | 89572445 | ID=MsG0480023767.01.T01:cds;Parent=MsG0480023767.01.T01 |
| Chr4 | CDS | 89571258 | 89572122 | 89571258 | ID=MsG0480023767.01.T01:cds;Parent=MsG0480023767.01.T01 |
| Gene Sequence |
| Protein sequence |
