Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014160.01.T01 | XP_003600092.1 | 93.9 | 459 | 22 | 2 | 1 | 453 | 1 | 459 | 0 | 896 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014160.01.T01 | Q9SZA4 | 76.159 | 453 | 99 | 5 | 7 | 453 | 8 | 457 | 0 | 711 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014160.01.T01 | MTR_3g051690 | 93.900 | 459 | 22 | 2 | 1 | 453 | 1 | 459 | 0.0 | 896 |
| MsG0380014160.01.T01 | MTR_5g008010 | 89.520 | 458 | 39 | 4 | 1 | 453 | 1 | 454 | 0.0 | 847 |
| MsG0380014160.01.T01 | MTR_7g106870 | 72.949 | 451 | 109 | 7 | 12 | 453 | 11 | 457 | 0.0 | 679 |
| MsG0380014160.01.T01 | MTR_7g451830 | 65.548 | 447 | 128 | 9 | 15 | 453 | 3 | 431 | 0.0 | 570 |
| MsG0380014160.01.T01 | MTR_7g047640 | 65.548 | 447 | 128 | 9 | 15 | 453 | 3 | 431 | 0.0 | 570 |
| MsG0380014160.01.T01 | MTR_7g057540 | 63.393 | 448 | 133 | 9 | 14 | 453 | 2 | 426 | 0.0 | 541 |
| MsG0380014160.01.T01 | MTR_7g055590 | 63.311 | 447 | 133 | 9 | 14 | 452 | 2 | 425 | 0.0 | 538 |
| MsG0380014160.01.T01 | MTR_7g053100 | 60.398 | 452 | 149 | 9 | 15 | 453 | 2 | 436 | 0.0 | 521 |
| MsG0380014160.01.T01 | MTR_7g034625 | 70.440 | 318 | 87 | 2 | 128 | 438 | 13 | 330 | 9.08e-166 | 470 |
| MsG0380014160.01.T01 | MTR_2g100540 | 50.342 | 439 | 163 | 12 | 25 | 453 | 4 | 397 | 8.68e-129 | 379 |
| MsG0380014160.01.T01 | MTR_2g100460 | 58.187 | 342 | 121 | 7 | 119 | 451 | 54 | 382 | 7.43e-127 | 373 |
| MsG0380014160.01.T01 | MTR_2g060710 | 44.282 | 411 | 207 | 8 | 33 | 429 | 26 | 428 | 2.32e-119 | 356 |
| MsG0380014160.01.T01 | MTR_3g067940 | 43.571 | 420 | 215 | 7 | 33 | 440 | 57 | 466 | 3.59e-114 | 344 |
| MsG0380014160.01.T01 | MTR_4g102510 | 42.959 | 419 | 207 | 7 | 33 | 432 | 51 | 456 | 5.51e-110 | 333 |
| MsG0380014160.01.T01 | MTR_4g415070 | 54.412 | 68 | 31 | 0 | 378 | 445 | 57 | 124 | 5.89e-17 | 82.0 |
| MsG0380014160.01.T01 | MTR_2g012630 | 27.854 | 219 | 147 | 8 | 158 | 373 | 35 | 245 | 7.11e-16 | 80.9 |
| MsG0380014160.01.T01 | MTR_2g012630 | 27.854 | 219 | 147 | 8 | 158 | 373 | 35 | 245 | 7.99e-16 | 80.9 |
| MsG0380014160.01.T01 | MTR_1g054300 | 26.599 | 297 | 160 | 10 | 178 | 427 | 114 | 399 | 9.91e-16 | 79.7 |
| MsG0380014160.01.T01 | MTR_1g054300 | 26.493 | 268 | 169 | 11 | 165 | 425 | 235 | 481 | 1.72e-14 | 75.9 |
| MsG0380014160.01.T01 | MTR_6g004040 | 28.755 | 233 | 152 | 10 | 144 | 370 | 19 | 243 | 1.98e-15 | 79.3 |
| MsG0380014160.01.T01 | MTR_5g016370 | 23.693 | 287 | 163 | 8 | 147 | 425 | 312 | 550 | 9.86e-15 | 77.0 |
| MsG0380014160.01.T01 | MTR_5g016350 | 23.077 | 286 | 178 | 7 | 141 | 425 | 294 | 538 | 8.62e-13 | 70.9 |
| MsG0380014160.01.T01 | MTR_5g016350 | 22.997 | 287 | 179 | 7 | 141 | 426 | 230 | 475 | 8.88e-13 | 70.5 |
| MsG0380014160.01.T01 | MTR_4g095058 | 24.752 | 303 | 192 | 13 | 151 | 426 | 241 | 534 | 1.19e-11 | 67.0 |
| MsG0380014160.01.T01 | MTR_4g095058 | 24.752 | 303 | 192 | 13 | 151 | 426 | 239 | 532 | 1.26e-11 | 67.0 |
| MsG0380014160.01.T01 | MTR_3g106080 | 23.701 | 308 | 193 | 10 | 159 | 434 | 326 | 623 | 3.43e-11 | 65.9 |
| MsG0380014160.01.T01 | MTR_7g086360 | 23.415 | 205 | 150 | 4 | 224 | 426 | 53 | 252 | 4.90e-11 | 64.3 |
| MsG0380014160.01.T01 | MTR_7g086360 | 32.298 | 161 | 95 | 6 | 186 | 337 | 185 | 340 | 8.27e-11 | 63.5 |
| MsG0380014160.01.T01 | MTR_1g049000 | 38.298 | 94 | 48 | 3 | 204 | 288 | 8 | 100 | 8.56e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014160.01.T01 | AT4G33270 | 76.159 | 453 | 99 | 5 | 7 | 453 | 8 | 457 | 0.0 | 711 |
| MsG0380014160.01.T01 | AT4G33260 | 76.351 | 444 | 96 | 5 | 16 | 453 | 7 | 447 | 0.0 | 686 |
| MsG0380014160.01.T01 | AT4G33260 | 74.473 | 427 | 100 | 5 | 16 | 436 | 7 | 430 | 0.0 | 652 |
| MsG0380014160.01.T01 | AT5G27570 | 67.692 | 455 | 131 | 7 | 7 | 453 | 4 | 450 | 0.0 | 613 |
| MsG0380014160.01.T01 | AT5G27080 | 66.667 | 438 | 131 | 6 | 23 | 453 | 13 | 442 | 0.0 | 590 |
| MsG0380014160.01.T01 | AT5G26900 | 64.523 | 451 | 145 | 6 | 9 | 453 | 3 | 444 | 0.0 | 581 |
| MsG0380014160.01.T01 | AT5G27945 | 61.456 | 371 | 123 | 5 | 99 | 453 | 62 | 428 | 2.10e-156 | 450 |
| MsG0380014160.01.T01 | AT4G22910 | 42.754 | 414 | 212 | 7 | 33 | 432 | 62 | 464 | 3.98e-112 | 339 |
| MsG0380014160.01.T01 | AT5G13840 | 51.148 | 305 | 146 | 3 | 131 | 435 | 164 | 465 | 8.32e-110 | 333 |
| MsG0380014160.01.T01 | AT5G13840 | 51.148 | 305 | 146 | 3 | 131 | 435 | 164 | 465 | 8.32e-110 | 333 |
| MsG0380014160.01.T01 | AT4G11920 | 41.412 | 425 | 215 | 8 | 33 | 438 | 53 | 462 | 5.23e-109 | 331 |
| MsG0380014160.01.T01 | AT1G11160 | 28.641 | 206 | 130 | 7 | 150 | 344 | 16 | 215 | 1.62e-16 | 82.8 |
| MsG0380014160.01.T01 | AT1G11160 | 28.641 | 206 | 130 | 7 | 150 | 344 | 16 | 215 | 1.66e-16 | 82.8 |
| MsG0380014160.01.T01 | AT1G11160 | 28.641 | 206 | 130 | 7 | 150 | 344 | 16 | 215 | 1.74e-16 | 82.8 |
| MsG0380014160.01.T01 | AT5G08390 | 29.487 | 234 | 135 | 10 | 140 | 370 | 37 | 243 | 3.00e-16 | 82.0 |
| MsG0380014160.01.T01 | AT1G11160 | 30.864 | 162 | 104 | 6 | 185 | 344 | 18 | 173 | 1.85e-15 | 79.7 |
| MsG0380014160.01.T01 | AT1G61210 | 26.786 | 224 | 141 | 8 | 142 | 350 | 6 | 221 | 4.52e-15 | 78.6 |
| MsG0380014160.01.T01 | AT1G61210 | 26.786 | 224 | 141 | 8 | 142 | 350 | 6 | 221 | 5.31e-15 | 78.2 |
| MsG0380014160.01.T01 | AT1G61210 | 26.786 | 224 | 141 | 8 | 142 | 350 | 6 | 221 | 5.36e-15 | 78.2 |
| MsG0380014160.01.T01 | AT5G23430 | 29.245 | 212 | 137 | 9 | 144 | 350 | 19 | 222 | 3.86e-14 | 75.5 |
| MsG0380014160.01.T01 | AT5G23430 | 29.245 | 212 | 137 | 9 | 144 | 350 | 19 | 222 | 3.86e-14 | 75.5 |
| MsG0380014160.01.T01 | AT5G23430 | 29.245 | 212 | 137 | 9 | 144 | 350 | 19 | 222 | 3.86e-14 | 75.5 |
| MsG0380014160.01.T01 | AT5G52820 | 27.419 | 248 | 156 | 11 | 186 | 427 | 244 | 473 | 1.38e-13 | 73.2 |
| MsG0380014160.01.T01 | AT2G32700 | 25.203 | 246 | 164 | 11 | 186 | 425 | 553 | 784 | 1.39e-12 | 70.5 |
| MsG0380014160.01.T01 | AT2G32700 | 25.203 | 246 | 164 | 11 | 186 | 425 | 574 | 805 | 1.40e-12 | 70.5 |
| MsG0380014160.01.T01 | AT5G25150 | 24.551 | 334 | 213 | 11 | 135 | 440 | 305 | 627 | 1.49e-12 | 70.1 |
| MsG0380014160.01.T01 | AT2G32700 | 25.203 | 246 | 164 | 11 | 186 | 425 | 555 | 786 | 1.51e-12 | 70.5 |
| MsG0380014160.01.T01 | AT2G32700 | 25.203 | 246 | 164 | 11 | 186 | 425 | 555 | 786 | 1.51e-12 | 70.5 |
| MsG0380014160.01.T01 | AT2G32700 | 25.203 | 246 | 164 | 11 | 186 | 425 | 555 | 786 | 1.51e-12 | 70.5 |
| MsG0380014160.01.T01 | AT2G32700 | 25.203 | 246 | 164 | 11 | 186 | 425 | 555 | 786 | 1.51e-12 | 70.5 |
| MsG0380014160.01.T01 | AT2G32700 | 25.203 | 246 | 164 | 11 | 186 | 425 | 555 | 786 | 1.51e-12 | 70.5 |
| MsG0380014160.01.T01 | AT5G25150 | 25.150 | 334 | 211 | 12 | 135 | 440 | 305 | 627 | 1.76e-12 | 70.1 |
| MsG0380014160.01.T01 | AT5G67320 | 24.648 | 284 | 166 | 12 | 147 | 426 | 330 | 569 | 6.46e-12 | 68.2 |
| MsG0380014160.01.T01 | AT2G41500 | 25.203 | 246 | 134 | 8 | 186 | 429 | 342 | 539 | 1.24e-11 | 67.0 |
| MsG0380014160.01.T01 | AT2G41500 | 25.203 | 246 | 134 | 8 | 186 | 429 | 342 | 539 | 1.24e-11 | 67.0 |
| MsG0380014160.01.T01 | AT3G49660 | 23.600 | 250 | 177 | 8 | 182 | 425 | 71 | 312 | 1.41e-11 | 65.9 |
| MsG0380014160.01.T01 | AT5G13480 | 30.769 | 182 | 116 | 7 | 162 | 340 | 241 | 415 | 1.64e-11 | 67.0 |
| MsG0380014160.01.T01 | AT5G13480 | 26.957 | 230 | 149 | 10 | 186 | 408 | 137 | 354 | 2.78e-11 | 66.2 |
| MsG0380014160.01.T01 | AT5G13480 | 30.769 | 182 | 116 | 7 | 162 | 340 | 218 | 392 | 1.81e-11 | 66.6 |
| MsG0380014160.01.T01 | AT5G13480 | 26.957 | 230 | 149 | 10 | 186 | 408 | 114 | 331 | 3.09e-11 | 65.9 |
| MsG0380014160.01.T01 | AT2G33340 | 26.042 | 192 | 134 | 5 | 238 | 426 | 236 | 422 | 1.83e-11 | 66.6 |
| MsG0380014160.01.T01 | AT2G33340 | 26.042 | 192 | 134 | 5 | 238 | 426 | 236 | 422 | 1.83e-11 | 66.6 |
| MsG0380014160.01.T01 | AT2G33340 | 26.042 | 192 | 134 | 5 | 238 | 426 | 236 | 422 | 1.89e-11 | 66.2 |
| MsG0380014160.01.T01 | AT5G13480 | 30.769 | 182 | 116 | 7 | 162 | 340 | 218 | 392 | 1.98e-11 | 66.6 |
| MsG0380014160.01.T01 | AT5G13480 | 26.957 | 230 | 149 | 10 | 186 | 408 | 114 | 331 | 3.73e-11 | 65.9 |
| MsG0380014160.01.T01 | AT5G13480 | 30.769 | 182 | 116 | 7 | 162 | 340 | 230 | 404 | 2.59e-11 | 66.2 |
| MsG0380014160.01.T01 | AT5G13480 | 26.957 | 230 | 149 | 10 | 186 | 408 | 126 | 343 | 4.62e-11 | 65.5 |
| MsG0380014160.01.T01 | AT2G43770 | 31.250 | 160 | 98 | 5 | 186 | 337 | 183 | 338 | 4.04e-11 | 64.7 |
| MsG0380014160.01.T01 | AT4G02730 | 26.852 | 216 | 145 | 9 | 216 | 426 | 34 | 241 | 4.28e-11 | 64.7 |
| MsG0380014160.01.T01 | AT1G04510 | 25.116 | 215 | 152 | 5 | 238 | 448 | 236 | 445 | 4.82e-11 | 65.1 |
| MsG0380014160.01.T01 | AT1G04510 | 25.116 | 215 | 152 | 5 | 238 | 448 | 236 | 445 | 5.04e-11 | 65.1 |
Find 131 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGATGAAACCTTGAGGTTT+TGG | 0.193519 | 3:+50638383 | MsG0380014160.01.T01:CDS |
| TGACTATTACCTCAATTTAC+TGG | 0.257532 | 3:+50637442 | MsG0380014160.01.T01:CDS |
| GTTGCCACTGTCCAACCATC+TGG | 0.273358 | 3:-50638352 | None:intergenic |
| TTACCTCAATTTACTGGATT+GGG | 0.283267 | 3:+50637448 | MsG0380014160.01.T01:CDS |
| AATGTTCTTGCAATTGGATT+AGG | 0.295419 | 3:+50637479 | MsG0380014160.01.T01:CDS |
| CTCCTTCCAGAGAAGCTTAC+AGG | 0.301895 | 3:+50636863 | MsG0380014160.01.T01:CDS |
| CTCTTCACTCCACTGTAAAA+AGG | 0.301942 | 3:+50638544 | MsG0380014160.01.T01:three_prime_UTR |
| ACATTCGAAGCAGTTTAAAA+AGG | 0.310846 | 3:+50638499 | MsG0380014160.01.T01:three_prime_UTR |
| TCAGACTTCTGACAGGATAT+TGG | 0.314178 | 3:+50637400 | MsG0380014160.01.T01:intron |
| CCTGAAGAGGAAAACGTGTT+TGG | 0.319867 | 3:-50636527 | None:intergenic |
| AGCGCCAATGTTCTTGCAAT+TGG | 0.327966 | 3:+50637473 | MsG0380014160.01.T01:CDS |
| GTTCTTGAAAGCTAGAATTC+TGG | 0.331154 | 3:-50636920 | None:intergenic |
| TTCTCTCTAACAATGGCTTC+AGG | 0.336781 | 3:+50636477 | MsG0380014160.01.T01:exon |
| AACGGCTCAACTCTTGCTTT+TGG | 0.338376 | 3:-50638445 | None:intergenic |
| GGATTGAAATGGTCGGCTTC+TGG | 0.343844 | 3:+50637944 | MsG0380014160.01.T01:CDS |
| ATGATAATCAACTTTACATC+TGG | 0.350065 | 3:+50637990 | MsG0380014160.01.T01:CDS |
| GCGATGAAACCATCAAGTTT+TGG | 0.364930 | 3:+50638128 | MsG0380014160.01.T01:CDS |
| CTGAAGAGGAAAACGTGTTT+GGG | 0.370197 | 3:-50636526 | None:intergenic |
| ATTACCTCAATTTACTGGAT+TGG | 0.371678 | 3:+50637447 | MsG0380014160.01.T01:CDS |
| TAGCTTCCTGTAAGCTTCTC+TGG | 0.375997 | 3:-50636869 | None:intergenic |
| TCTCATTCTTGTTCCACAAC+AGG | 0.376647 | 3:-50638207 | None:intergenic |
| AAATCCATCGCTGATCTATT+CGG | 0.383791 | 3:-50636772 | None:intergenic |
| GCTCCTGATGGCCGTCATAT+TGG | 0.389395 | 3:+50637596 | MsG0380014160.01.T01:CDS |
| ATTTCAATCCGCAAACTTCT+CGG | 0.394694 | 3:-50637931 | None:intergenic |
| AATAATTCGCCGGGGCTTGA+TGG | 0.396021 | 3:-50637016 | None:intergenic |
| CCCTATCACATCTGTAAGTT+GGG | 0.396604 | 3:+50637574 | MsG0380014160.01.T01:CDS |
| TCTGCCATCTTCACCATTGA+AGG | 0.397901 | 3:-50638286 | None:intergenic |
| CTCAGTTGACACTGGGTCTC+AGG | 0.408962 | 3:+50638177 | MsG0380014160.01.T01:CDS |
| CAGAAGCTTTAAACATGAAC+AGG | 0.411753 | 3:+50636896 | MsG0380014160.01.T01:CDS |
| TAGGAAACACATTGTATTTG+TGG | 0.412235 | 3:+50637498 | MsG0380014160.01.T01:CDS |
| CAAGGGAATTTACTAGCTAC+TGG | 0.417964 | 3:+50638094 | MsG0380014160.01.T01:CDS |
| GCCCTATCACATCTGTAAGT+TGG | 0.420766 | 3:+50637573 | MsG0380014160.01.T01:CDS |
| GAGAAGTTTGCGGATTGAAA+TGG | 0.425267 | 3:+50637933 | MsG0380014160.01.T01:CDS |
| CTCAGGTATGTTCCCTGTTG+TGG | 0.426699 | 3:+50638194 | MsG0380014160.01.T01:CDS |
| TAATAGTCATCCACAATGTC+TGG | 0.428065 | 3:-50637428 | None:intergenic |
| CTTGCTTGGTGTCCTTTCCA+AGG | 0.428743 | 3:+50638076 | MsG0380014160.01.T01:CDS |
| GTGGGTATTCCAAAACTTGA+TGG | 0.428833 | 3:-50638137 | None:intergenic |
| TAGGCAGCGAGTAGGGTCTT+TGG | 0.428851 | 3:+50637805 | MsG0380014160.01.T01:CDS |
| CACAGAATCAGCTAACACTT+TGG | 0.446675 | 3:+50638257 | MsG0380014160.01.T01:CDS |
| GCCCAACTTACAGATGTGAT+AGG | 0.450468 | 3:-50637575 | None:intergenic |
| AGGAAACACATTGTATTTGT+GGG | 0.452538 | 3:+50637499 | MsG0380014160.01.T01:CDS |
| CTCCGTAAGTGTTCCTGAAG+AGG | 0.466289 | 3:-50636540 | None:intergenic |
| TTGCTTGGTGTCCTTTCCAA+GGG | 0.471233 | 3:+50638077 | MsG0380014160.01.T01:CDS |
| TTGATTATCATTCCCTCCAC+TGG | 0.480711 | 3:-50637978 | None:intergenic |
| TCATGAGAGAAGAAATCAAC+TGG | 0.484334 | 3:-50636958 | None:intergenic |
| ACAACTCTGAAGTGCAGCTA+TGG | 0.484474 | 3:+50637630 | MsG0380014160.01.T01:CDS |
| GGATACAGCTTCAGATAGAC+AGG | 0.484963 | 3:+50637652 | MsG0380014160.01.T01:CDS |
| ATGCCAATATGACGGCCATC+AGG | 0.485428 | 3:-50637599 | None:intergenic |
| TTCCTCTTCAGGAACACTTA+CGG | 0.486142 | 3:+50636538 | MsG0380014160.01.T01:CDS |
| CTAGCTACTGGCGGAGGCAG+TGG | 0.487153 | 3:+50638106 | MsG0380014160.01.T01:CDS |
| CACTTCAAGAGTTCTTCATA+TGG | 0.487383 | 3:+50638321 | MsG0380014160.01.T01:CDS |
| TTGCCACTGTCCAACCATCT+GGG | 0.492660 | 3:-50638351 | None:intergenic |
| TGGAAGGAGAGCACACTTGT+GGG | 0.493184 | 3:-50636849 | None:intergenic |
| ACTTTGGAAATATCCTTCAA+TGG | 0.495344 | 3:+50638273 | MsG0380014160.01.T01:CDS |
| GATGGCCGTCATATTGGCAT+TGG | 0.495923 | 3:+50637602 | MsG0380014160.01.T01:CDS |
| ATATCCTTCAATGGTGAAGA+TGG | 0.498891 | 3:+50638282 | MsG0380014160.01.T01:CDS |
| CGCACTACATGGTGACTGAA+GGG | 0.507766 | 3:+50636803 | MsG0380014160.01.T01:CDS |
| CTGGAAGGAGAGCACACTTG+TGG | 0.508404 | 3:-50636850 | None:intergenic |
| AAGAAATCAACTGGCGGCGT+AGG | 0.510142 | 3:-50636949 | None:intergenic |
| GGGCATGACCGAGAAGTTTG+CGG | 0.518071 | 3:+50637923 | MsG0380014160.01.T01:CDS |
| CTGCAGTTGAGAACTTTGAA+AGG | 0.529944 | 3:+50637776 | MsG0380014160.01.T01:intron |
| GAACTTTGAAAGGTGGGCAT+AGG | 0.530523 | 3:+50637786 | MsG0380014160.01.T01:CDS |
| AATAACCACATACTCACAAC+CGG | 0.531617 | 3:+50637833 | MsG0380014160.01.T01:CDS |
| TCCCTCCGGTTGTGAGTATG+TGG | 0.533027 | 3:-50637838 | None:intergenic |
| GCCCCGGCGAATTATTCCTC+AGG | 0.533857 | 3:+50637023 | MsG0380014160.01.T01:CDS |
| CTCATTCTTGTTCCACAACA+GGG | 0.537252 | 3:-50638206 | None:intergenic |
| CTGCAGTAAAAGCTCTTGCT+TGG | 0.539760 | 3:+50638062 | MsG0380014160.01.T01:CDS |
| ACACCTGAGGAATAATTCGC+CGG | 0.542147 | 3:-50637026 | None:intergenic |
| TGATAATCAACTTTACATCT+GGG | 0.543770 | 3:+50637991 | MsG0380014160.01.T01:CDS |
| TTTCGATTATGCGCACTACA+TGG | 0.544215 | 3:+50636792 | MsG0380014160.01.T01:CDS |
| TGCTTGAACTCAGTTGACAC+TGG | 0.544299 | 3:+50638169 | MsG0380014160.01.T01:CDS |
| GACAGTGGCAACAGCTGCAG+CGG | 0.545471 | 3:+50638363 | MsG0380014160.01.T01:CDS |
| AGGGAGCTACTCAGCTCTCA+TGG | 0.545560 | 3:+50638229 | MsG0380014160.01.T01:CDS |
| AACGGTAACAAGTTCTGAAG+TGG | 0.549127 | 3:-50637537 | None:intergenic |
| TATTTGTGGGATGCATCAAA+CGG | 0.551368 | 3:+50637512 | MsG0380014160.01.T01:CDS |
| AAATCAACTGGCGGCGTAGG+TGG | 0.551699 | 3:-50636946 | None:intergenic |
| CTCACAACCGGAGGGATGGA+TGG | 0.552173 | 3:+50637845 | MsG0380014160.01.T01:CDS |
| CAACTCTGAAGTGCAGCTAT+GGG | 0.552386 | 3:+50637631 | MsG0380014160.01.T01:CDS |
| TAATCCAATTGCAAGAACAT+TGG | 0.554610 | 3:-50637477 | None:intergenic |
| CATATGGCGCAGAGCCCAGA+TGG | 0.555918 | 3:+50638337 | MsG0380014160.01.T01:CDS |
| AAGTTTACCATCCATCCCTC+CGG | 0.557247 | 3:-50637852 | None:intergenic |
| GTGGGCATAGGCAGCGAGTA+GGG | 0.557831 | 3:+50637798 | MsG0380014160.01.T01:CDS |
| CACCTGAGGAATAATTCGCC+GGG | 0.559324 | 3:-50637025 | None:intergenic |
| AGTTGAGAACTTTGAAAGGT+GGG | 0.559397 | 3:+50637780 | MsG0380014160.01.T01:intron |
| TGGCGCAGAGCCCAGATGGT+TGG | 0.562028 | 3:+50638341 | MsG0380014160.01.T01:CDS |
| TACCTCAATTTACTGGATTG+GGG | 0.562441 | 3:+50637449 | MsG0380014160.01.T01:CDS |
| GCTAGTAAATTCCCTTGGAA+AGG | 0.568517 | 3:-50638088 | None:intergenic |
| GTGAAGATGGCAGAACTCAA+TGG | 0.571074 | 3:+50638295 | MsG0380014160.01.T01:CDS |
| GCGCACTACATGGTGACTGA+AGG | 0.571364 | 3:+50636802 | MsG0380014160.01.T01:CDS |
| CATACTCACAACCGGAGGGA+TGG | 0.571933 | 3:+50637841 | MsG0380014160.01.T01:CDS |
| CAGTTGAGAACTTTGAAAGG+TGG | 0.572101 | 3:+50637779 | MsG0380014160.01.T01:intron |
| TTCCCCAATCCAGTAAATTG+AGG | 0.576674 | 3:-50637451 | None:intergenic |
| TTCCTGTAAGCTTCTCTGGA+AGG | 0.579286 | 3:-50636865 | None:intergenic |
| ACTGAAGGGGCTAAAGCTAA+AGG | 0.581037 | 3:+50636817 | MsG0380014160.01.T01:CDS |
| AGGGGCTAAAGCTAAAGGTA+AGG | 0.581254 | 3:+50636822 | MsG0380014160.01.T01:CDS |
| TCTGTAAGTTGGGCTCCTGA+TGG | 0.584539 | 3:+50637584 | MsG0380014160.01.T01:CDS |
| CCCAACTTACAGATGTGATA+GGG | 0.585245 | 3:-50637574 | None:intergenic |
| AAAAGCATTCCAAAACCTCA+AGG | 0.587395 | 3:-50638392 | None:intergenic |
| GGTGGGCATAGGCAGCGAGT+AGG | 0.596714 | 3:+50637797 | MsG0380014160.01.T01:CDS |
| GTCTACAATTAGCCAGTGGA+GGG | 0.598993 | 3:+50637966 | MsG0380014160.01.T01:CDS |
| AGCGAGTAGGGTCTTTGGCA+TGG | 0.601597 | 3:+50637810 | MsG0380014160.01.T01:CDS |
| GTTACCGTTGATGATGAAGA+TGG | 0.607070 | 3:+50637551 | MsG0380014160.01.T01:CDS |
| ATTGGATGCTCCAGACATTG+TGG | 0.612151 | 3:+50637418 | MsG0380014160.01.T01:CDS |
| GGTCTACAATTAGCCAGTGG+AGG | 0.616243 | 3:+50637965 | MsG0380014160.01.T01:CDS |
| AAGATAAAACCATCAAGCCC+CGG | 0.617625 | 3:+50637007 | MsG0380014160.01.T01:CDS |
| TGTTGTGGAACAAGAATGAG+AGG | 0.618210 | 3:+50638209 | MsG0380014160.01.T01:CDS |
| ATGCGGCTCAAATGTGAGAA+CGG | 0.625587 | 3:-50638463 | None:intergenic |
| AGGGCCATCTTCATCATCAA+CGG | 0.626287 | 3:-50637555 | None:intergenic |
| GCTTGAACTCAGTTGACACT+GGG | 0.627877 | 3:+50638170 | MsG0380014160.01.T01:CDS |
| CAGTAGCTAGTAAATTCCCT+TGG | 0.629888 | 3:-50638093 | None:intergenic |
| AATTTACTAGCTACTGGCGG+AGG | 0.633586 | 3:+50638100 | MsG0380014160.01.T01:CDS |
| TCAAGCCAATGCCAATATGA+CGG | 0.636859 | 3:-50637607 | None:intergenic |
| GAGCCCAGATGGTTGGACAG+TGG | 0.641101 | 3:+50638348 | MsG0380014160.01.T01:CDS |
| ACCACATACTCACAACCGGA+GGG | 0.650856 | 3:+50637837 | MsG0380014160.01.T01:CDS |
| CATACCGAATAGATCAGCGA+TGG | 0.652740 | 3:+50636768 | MsG0380014160.01.T01:CDS |
| GCACTACATGGTGACTGAAG+GGG | 0.656801 | 3:+50636804 | MsG0380014160.01.T01:CDS |
| AGTTTGCGGATTGAAATGGT+CGG | 0.668119 | 3:+50637937 | MsG0380014160.01.T01:CDS |
| GTTCAAGCATGCACCTGTGT+GGG | 0.668846 | 3:-50638155 | None:intergenic |
| CTGCAGCGGATGAAACCTTG+AGG | 0.678181 | 3:+50638377 | MsG0380014160.01.T01:CDS |
| AGTTCAAGCATGCACCTGTG+TGG | 0.678713 | 3:-50638156 | None:intergenic |
| TCTGGTCTACAATTAGCCAG+TGG | 0.685380 | 3:+50637962 | MsG0380014160.01.T01:CDS |
| ACATTGTTGAAACATACAGA+GGG | 0.688874 | 3:+50637903 | MsG0380014160.01.T01:CDS |
| AACCACATACTCACAACCGG+AGG | 0.695066 | 3:+50637836 | MsG0380014160.01.T01:CDS |
| TGAGAGAAGAAATCAACTGG+CGG | 0.700989 | 3:-50636955 | None:intergenic |
| CACATTGTTGAAACATACAG+AGG | 0.702329 | 3:+50637902 | MsG0380014160.01.T01:CDS |
| GGGATAGAAGTACTTCAACA+AGG | 0.702662 | 3:+50638011 | MsG0380014160.01.T01:CDS |
| GGGAATTTACTAGCTACTGG+CGG | 0.715639 | 3:+50638097 | MsG0380014160.01.T01:CDS |
| ATGTTACTACTTATCGAATG+CGG | 0.717524 | 3:-50638480 | None:intergenic |
| GTTGTGGAACAAGAATGAGA+GGG | 0.727155 | 3:+50638210 | MsG0380014160.01.T01:CDS |
| ACCTGAGGAATAATTCGCCG+GGG | 0.733838 | 3:-50637024 | None:intergenic |
| ATAGAAGTACTTCAACAAGG+TGG | 0.753913 | 3:+50638014 | MsG0380014160.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAGAATGAATTTTGAAATT+AGG | + | Chr3:50636630-50636649 | MsG0380014160.01.T01:intron | 15.0% |
| !!! | AAGAAATTTTTTCATTGTTA+GGG | + | Chr3:50636584-50636603 | MsG0380014160.01.T01:intron | 15.0% |
| !!! | ATATTTTATCATTATCGATT+TGG | + | Chr3:50637091-50637110 | MsG0380014160.01.T01:intron | 15.0% |
| !!! | CAAGTACAAAATTTTAAAAT+CGG | - | Chr3:50637164-50637183 | None:intergenic | 15.0% |
| !!! | TAAGAAATTTTTTCATTGTT+AGG | + | Chr3:50636583-50636602 | MsG0380014160.01.T01:intron | 15.0% |
| !! | AATATTAGAAAACTAGTAGT+AGG | - | Chr3:50637741-50637760 | None:intergenic | 20.0% |
| !!! | ATAATAATGTATCGATTGAA+GGG | - | Chr3:50637698-50637717 | None:intergenic | 20.0% |
| !!! | ATTAGTTTTTGAAAATCAAG+TGG | + | Chr3:50637184-50637203 | MsG0380014160.01.T01:intron | 20.0% |
| !!! | CACAAAATAGCAAAATATTT+TGG | - | Chr3:50637357-50637376 | None:intergenic | 20.0% |
| !!! | TAAATGAACTCTAGTTTAAA+CGG | + | Chr3:50637131-50637150 | MsG0380014160.01.T01:intron | 20.0% |
| !!! | TTAGTTTTTGAAAATCAAGT+GGG | + | Chr3:50637185-50637204 | MsG0380014160.01.T01:intron | 20.0% |
| ! | ATGATAATCAACTTTACATC+TGG | + | Chr3:50637990-50638009 | MsG0380014160.01.T01:CDS | 25.0% |
| ! | TGATAATCAACTTTACATCT+GGG | + | Chr3:50637991-50638010 | MsG0380014160.01.T01:CDS | 25.0% |
| !!! | CATAATAATGTATCGATTGA+AGG | - | Chr3:50637699-50637718 | None:intergenic | 25.0% |
| AATGTTCTTGCAATTGGATT+AGG | + | Chr3:50637479-50637498 | MsG0380014160.01.T01:CDS | 30.0% | |
| ACATTCGAAGCAGTTTAAAA+AGG | + | Chr3:50638499-50638518 | MsG0380014160.01.T01:three_prime_UTR | 30.0% | |
| ACATTGTTGAAACATACAGA+GGG | + | Chr3:50637903-50637922 | MsG0380014160.01.T01:CDS | 30.0% | |
| AGAAAACTAGTAGTAGGAAA+TGG | - | Chr3:50637735-50637754 | None:intergenic | 30.0% | |
| AGGAAACACATTGTATTTGT+GGG | + | Chr3:50637499-50637518 | MsG0380014160.01.T01:CDS | 30.0% | |
| ATGTTACTACTTATCGAATG+CGG | - | Chr3:50638483-50638502 | None:intergenic | 30.0% | |
| ATTACCTCAATTTACTGGAT+TGG | + | Chr3:50637447-50637466 | MsG0380014160.01.T01:CDS | 30.0% | |
| TAATCCAATTGCAAGAACAT+TGG | - | Chr3:50637480-50637499 | None:intergenic | 30.0% | |
| TAGGAAACACATTGTATTTG+TGG | + | Chr3:50637498-50637517 | MsG0380014160.01.T01:CDS | 30.0% | |
| TGACTATTACCTCAATTTAC+TGG | + | Chr3:50637442-50637461 | MsG0380014160.01.T01:CDS | 30.0% | |
| TTACCTCAATTTACTGGATT+GGG | + | Chr3:50637448-50637467 | MsG0380014160.01.T01:CDS | 30.0% | |
| TTAGGTCATGATAACTAACT+AGG | + | Chr3:50636648-50636667 | MsG0380014160.01.T01:intron | 30.0% | |
| ! | ACTTTGGAAATATCCTTCAA+TGG | + | Chr3:50638273-50638292 | MsG0380014160.01.T01:CDS | 30.0% |
| ! | GTTTCTTTTCTCTCTAACAA+TGG | + | Chr3:50636470-50636489 | MsG0380014160.01.T01:exon | 30.0% |
| ! | TGTTTTCGTAATCGTTTGTA+TGG | + | Chr3:50637215-50637234 | MsG0380014160.01.T01:intron | 30.0% |
| !! | AGACAGGTTTTATACTTATC+TGG | + | Chr3:50637668-50637687 | MsG0380014160.01.T01:intron | 30.0% |
| !! | TCTTATCTGAAAGTGTTGTA+TGG | + | Chr3:50637325-50637344 | MsG0380014160.01.T01:intron | 30.0% |
| !! | TCTTGTGCTAATTGATTTGT+TGG | + | Chr3:50637263-50637282 | MsG0380014160.01.T01:intron | 30.0% |
| !!! | TAAAAAGGCAAGCTTTTTTC+TGG | + | Chr3:50638514-50638533 | MsG0380014160.01.T01:three_prime_UTR | 30.0% |
| AAATCCATCGCTGATCTATT+CGG | - | Chr3:50636775-50636794 | None:intergenic | 35.0% | |
| AATAACCACATACTCACAAC+CGG | + | Chr3:50637833-50637852 | MsG0380014160.01.T01:CDS | 35.0% | |
| ATATCCTTCAATGGTGAAGA+TGG | + | Chr3:50638282-50638301 | MsG0380014160.01.T01:CDS | 35.0% | |
| ATTTCAATCCGCAAACTTCT+CGG | - | Chr3:50637934-50637953 | None:intergenic | 35.0% | |
| CACATTGTTGAAACATACAG+AGG | + | Chr3:50637902-50637921 | MsG0380014160.01.T01:CDS | 35.0% | |
| CACTTCAAGAGTTCTTCATA+TGG | + | Chr3:50638321-50638340 | MsG0380014160.01.T01:CDS | 35.0% | |
| GTTCTTGAAAGCTAGAATTC+TGG | - | Chr3:50636923-50636942 | None:intergenic | 35.0% | |
| TAATAGTCATCCACAATGTC+TGG | - | Chr3:50637431-50637450 | None:intergenic | 35.0% | |
| TACCTCAATTTACTGGATTG+GGG | + | Chr3:50637449-50637468 | MsG0380014160.01.T01:CDS | 35.0% | |
| TATTTGTGGGATGCATCAAA+CGG | + | Chr3:50637512-50637531 | MsG0380014160.01.T01:CDS | 35.0% | |
| TCATGAGAGAAGAAATCAAC+TGG | - | Chr3:50636961-50636980 | None:intergenic | 35.0% | |
| ! | AGTTGAGAACTTTGAAAGGT+GGG | + | Chr3:50637780-50637799 | MsG0380014160.01.T01:intron | 35.0% |
| !! | AAAACGTGTTTGGGTTTTGA+TGG | - | Chr3:50636520-50636539 | None:intergenic | 35.0% |
| !! | AAAAGCATTCCAAAACCTCA+AGG | - | Chr3:50638395-50638414 | None:intergenic | 35.0% |
| !! | ATAGAAGTACTTCAACAAGG+TGG | + | Chr3:50638014-50638033 | MsG0380014160.01.T01:CDS | 35.0% |
| !! | ATGTTTTTCAGACTTCTGAC+AGG | + | Chr3:50637393-50637412 | MsG0380014160.01.T01:intron | 35.0% |
| !! | CAGAAGCTTTAAACATGAAC+AGG | + | Chr3:50636896-50636915 | MsG0380014160.01.T01:CDS | 35.0% |
| !! | TTGATTTGTCTGTTACCAGT+TGG | + | Chr3:50636738-50636757 | MsG0380014160.01.T01:intron | 35.0% |
| !!! | TTGAGGTTTTGGAATGCTTT+TGG | + | Chr3:50638394-50638413 | MsG0380014160.01.T01:CDS | 35.0% |
| AAGATAAAACCATCAAGCCC+CGG | + | Chr3:50637007-50637026 | MsG0380014160.01.T01:CDS | 40.0% | |
| CAAGGGAATTTACTAGCTAC+TGG | + | Chr3:50638094-50638113 | MsG0380014160.01.T01:CDS | 40.0% | |
| CACAGAATCAGCTAACACTT+TGG | + | Chr3:50638257-50638276 | MsG0380014160.01.T01:CDS | 40.0% | |
| CACTCCACTGTAAAAAGGAA+TGG | + | Chr3:50638549-50638568 | MsG0380014160.01.T01:three_prime_UTR | 40.0% | |
| CAGTAGCTAGTAAATTCCCT+TGG | - | Chr3:50638096-50638115 | None:intergenic | 40.0% | |
| CCCAACTTACAGATGTGATA+GGG | - | Chr3:50637577-50637596 | None:intergenic | 40.0% | |
| CCCTATCACATCTGTAAGTT+GGG | + | Chr3:50637574-50637593 | MsG0380014160.01.T01:CDS | 40.0% | |
| CTCATTCTTGTTCCACAACA+GGG | - | Chr3:50638209-50638228 | None:intergenic | 40.0% | |
| CTCTTCACTCCACTGTAAAA+AGG | + | Chr3:50638544-50638563 | MsG0380014160.01.T01:three_prime_UTR | 40.0% | |
| CTGAAGAGGAAAACGTGTTT+GGG | - | Chr3:50636529-50636548 | None:intergenic | 40.0% | |
| CTGCAGTTGAGAACTTTGAA+AGG | + | Chr3:50637776-50637795 | MsG0380014160.01.T01:intron | 40.0% | |
| GCTAGTAAATTCCCTTGGAA+AGG | - | Chr3:50638091-50638110 | None:intergenic | 40.0% | |
| GTGGGTATTCCAAAACTTGA+TGG | - | Chr3:50638140-50638159 | None:intergenic | 40.0% | |
| GTTGTGGAACAAGAATGAGA+GGG | + | Chr3:50638210-50638229 | MsG0380014160.01.T01:CDS | 40.0% | |
| TCAAGCCAATGCCAATATGA+CGG | - | Chr3:50637610-50637629 | None:intergenic | 40.0% | |
| TCAGACTTCTGACAGGATAT+TGG | + | Chr3:50637400-50637419 | MsG0380014160.01.T01:intron | 40.0% | |
| TCGGTATGAATCTATCCAAC+TGG | - | Chr3:50636756-50636775 | None:intergenic | 40.0% | |
| TCTCATTCTTGTTCCACAAC+AGG | - | Chr3:50638210-50638229 | None:intergenic | 40.0% | |
| TGAGAGAAGAAATCAACTGG+CGG | - | Chr3:50636958-50636977 | None:intergenic | 40.0% | |
| TGTTGTGGAACAAGAATGAG+AGG | + | Chr3:50638209-50638228 | MsG0380014160.01.T01:CDS | 40.0% | |
| TTCCCCAATCCAGTAAATTG+AGG | - | Chr3:50637454-50637473 | None:intergenic | 40.0% | |
| TTCCTCTTCAGGAACACTTA+CGG | + | Chr3:50636538-50636557 | MsG0380014160.01.T01:CDS | 40.0% | |
| TTCTCTCTAACAATGGCTTC+AGG | + | Chr3:50636477-50636496 | MsG0380014160.01.T01:exon | 40.0% | |
| TTGATTATCATTCCCTCCAC+TGG | - | Chr3:50637981-50638000 | None:intergenic | 40.0% | |
| TTTCGATTATGCGCACTACA+TGG | + | Chr3:50636792-50636811 | MsG0380014160.01.T01:CDS | 40.0% | |
| ! | AGTTTGCGGATTGAAATGGT+CGG | + | Chr3:50637937-50637956 | MsG0380014160.01.T01:CDS | 40.0% |
| ! | CAGACCATTCCTTTTTACAG+TGG | - | Chr3:50638556-50638575 | None:intergenic | 40.0% |
| ! | CAGTTGAGAACTTTGAAAGG+TGG | + | Chr3:50637779-50637798 | MsG0380014160.01.T01:intron | 40.0% |
| ! | GAGAAGTTTGCGGATTGAAA+TGG | + | Chr3:50637933-50637952 | MsG0380014160.01.T01:CDS | 40.0% |
| ! | GCGATGAAACCATCAAGTTT+TGG | + | Chr3:50638128-50638147 | MsG0380014160.01.T01:CDS | 40.0% |
| ! | GTCTAACTCTTCTGTTTTGC+AGG | + | Chr3:50636406-50636425 | MsG0380014160.01.T01:five_prime_UTR | 40.0% |
| !! | AACGGTAACAAGTTCTGAAG+TGG | - | Chr3:50637540-50637559 | None:intergenic | 40.0% |
| !! | GGGATAGAAGTACTTCAACA+AGG | + | Chr3:50638011-50638030 | MsG0380014160.01.T01:CDS | 40.0% |
| !! | GTTACCGTTGATGATGAAGA+TGG | + | Chr3:50637551-50637570 | MsG0380014160.01.T01:CDS | 40.0% |
| !!! | AAGTTTTGGAATACCCACAC+AGG | + | Chr3:50638142-50638161 | MsG0380014160.01.T01:CDS | 40.0% |
| AAGTTTACCATCCATCCCTC+CGG | - | Chr3:50637855-50637874 | None:intergenic | 45.0% | |
| AATTTACTAGCTACTGGCGG+AGG | + | Chr3:50638100-50638119 | MsG0380014160.01.T01:CDS | 45.0% | |
| ACACCTGAGGAATAATTCGC+CGG | - | Chr3:50637029-50637048 | None:intergenic | 45.0% | |
| ACTGAAGGGGCTAAAGCTAA+AGG | + | Chr3:50636817-50636836 | MsG0380014160.01.T01:CDS | 45.0% | |
| AGCGCCAATGTTCTTGCAAT+TGG | + | Chr3:50637473-50637492 | MsG0380014160.01.T01:CDS | 45.0% | |
| AGGGCCATCTTCATCATCAA+CGG | - | Chr3:50637558-50637577 | None:intergenic | 45.0% | |
| AGGGGCTAAAGCTAAAGGTA+AGG | + | Chr3:50636822-50636841 | MsG0380014160.01.T01:CDS | 45.0% | |
| ATGCGGCTCAAATGTGAGAA+CGG | - | Chr3:50638466-50638485 | None:intergenic | 45.0% | |
| ATTGGATGCTCCAGACATTG+TGG | + | Chr3:50637418-50637437 | MsG0380014160.01.T01:CDS | 45.0% | |
| CATACCGAATAGATCAGCGA+TGG | + | Chr3:50636768-50636787 | MsG0380014160.01.T01:CDS | 45.0% | |
| CCTGAAGAGGAAAACGTGTT+TGG | - | Chr3:50636530-50636549 | None:intergenic | 45.0% | |
| CTGCAGTAAAAGCTCTTGCT+TGG | + | Chr3:50638062-50638081 | MsG0380014160.01.T01:CDS | 45.0% | |
| GCCCAACTTACAGATGTGAT+AGG | - | Chr3:50637578-50637597 | None:intergenic | 45.0% | |
| GCCCTATCACATCTGTAAGT+TGG | + | Chr3:50637573-50637592 | MsG0380014160.01.T01:CDS | 45.0% | |
| GCTTGAACTCAGTTGACACT+GGG | + | Chr3:50638170-50638189 | MsG0380014160.01.T01:CDS | 45.0% | |
| GGATACAGCTTCAGATAGAC+AGG | + | Chr3:50637652-50637671 | MsG0380014160.01.T01:CDS | 45.0% | |
| GGGAATTTACTAGCTACTGG+CGG | + | Chr3:50638097-50638116 | MsG0380014160.01.T01:CDS | 45.0% | |
| GTCTACAATTAGCCAGTGGA+GGG | + | Chr3:50637966-50637985 | MsG0380014160.01.T01:CDS | 45.0% | |
| GTGAAGATGGCAGAACTCAA+TGG | + | Chr3:50638295-50638314 | MsG0380014160.01.T01:CDS | 45.0% | |
| TAGCTTCCTGTAAGCTTCTC+TGG | - | Chr3:50636872-50636891 | None:intergenic | 45.0% | |
| TATACACACACACACACCTG+AGG | - | Chr3:50637042-50637061 | None:intergenic | 45.0% | |
| TCTGCCATCTTCACCATTGA+AGG | - | Chr3:50638289-50638308 | None:intergenic | 45.0% | |
| TCTGGTCTACAATTAGCCAG+TGG | + | Chr3:50637962-50637981 | MsG0380014160.01.T01:CDS | 45.0% | |
| TGCTTGAACTCAGTTGACAC+TGG | + | Chr3:50638169-50638188 | MsG0380014160.01.T01:CDS | 45.0% | |
| TTCCTGTAAGCTTCTCTGGA+AGG | - | Chr3:50636868-50636887 | None:intergenic | 45.0% | |
| ! | AACGGCTCAACTCTTGCTTT+TGG | - | Chr3:50638448-50638467 | None:intergenic | 45.0% |
| ! | CCAAACACGTTTTCCTCTTC+AGG | + | Chr3:50636527-50636546 | MsG0380014160.01.T01:CDS | 45.0% |
| ! | CGGATGAAACCTTGAGGTTT+TGG | + | Chr3:50638383-50638402 | MsG0380014160.01.T01:CDS | 45.0% |
| ! | GAACTTTGAAAGGTGGGCAT+AGG | + | Chr3:50637786-50637805 | MsG0380014160.01.T01:CDS | 45.0% |
| !! | ACAACTCTGAAGTGCAGCTA+TGG | + | Chr3:50637630-50637649 | MsG0380014160.01.T01:CDS | 45.0% |
| !! | ACGTGTTTGGGTTTTGATGG+CGG | - | Chr3:50636517-50636536 | None:intergenic | 45.0% |
| !! | CAACTCTGAAGTGCAGCTAT+GGG | + | Chr3:50637631-50637650 | MsG0380014160.01.T01:CDS | 45.0% |
| !! | GCAGCTTTTGTTGCTACTTC+TGG | - | Chr3:50638424-50638443 | None:intergenic | 45.0% |
| !! | TTGCTTGGTGTCCTTTCCAA+GGG | + | Chr3:50638077-50638096 | MsG0380014160.01.T01:CDS | 45.0% |
| AACCACATACTCACAACCGG+AGG | + | Chr3:50637836-50637855 | MsG0380014160.01.T01:CDS | 50.0% | |
| AAGAAATCAACTGGCGGCGT+AGG | - | Chr3:50636952-50636971 | None:intergenic | 50.0% | |
| AATAATTCGCCGGGGCTTGA+TGG | - | Chr3:50637019-50637038 | None:intergenic | 50.0% | |
| ACCACATACTCACAACCGGA+GGG | + | Chr3:50637837-50637856 | MsG0380014160.01.T01:CDS | 50.0% | |
| ACCTGAGGAATAATTCGCCG+GGG | - | Chr3:50637027-50637046 | None:intergenic | 50.0% | |
| AGTTCAAGCATGCACCTGTG+TGG | - | Chr3:50638159-50638178 | None:intergenic | 50.0% | |
| ATGCCAATATGACGGCCATC+AGG | - | Chr3:50637602-50637621 | None:intergenic | 50.0% | |
| CACCTGAGGAATAATTCGCC+GGG | - | Chr3:50637028-50637047 | None:intergenic | 50.0% | |
| CGCACTACATGGTGACTGAA+GGG | + | Chr3:50636803-50636822 | MsG0380014160.01.T01:CDS | 50.0% | |
| CTCAGGTATGTTCCCTGTTG+TGG | + | Chr3:50638194-50638213 | MsG0380014160.01.T01:CDS | 50.0% | |
| CTCCGTAAGTGTTCCTGAAG+AGG | - | Chr3:50636543-50636562 | None:intergenic | 50.0% | |
| CTCCTTCCAGAGAAGCTTAC+AGG | + | Chr3:50636863-50636882 | MsG0380014160.01.T01:CDS | 50.0% | |
| GATGGCCGTCATATTGGCAT+TGG | + | Chr3:50637602-50637621 | MsG0380014160.01.T01:CDS | 50.0% | |
| GCACTACATGGTGACTGAAG+GGG | + | Chr3:50636804-50636823 | MsG0380014160.01.T01:CDS | 50.0% | |
| GGTCTACAATTAGCCAGTGG+AGG | + | Chr3:50637965-50637984 | MsG0380014160.01.T01:CDS | 50.0% | |
| GTTCAAGCATGCACCTGTGT+GGG | - | Chr3:50638158-50638177 | None:intergenic | 50.0% | |
| TTGCCACTGTCCAACCATCT+GGG | - | Chr3:50638354-50638373 | None:intergenic | 50.0% | |
| ! | GGATTGAAATGGTCGGCTTC+TGG | + | Chr3:50637944-50637963 | MsG0380014160.01.T01:CDS | 50.0% |
| ! | TCTGTAAGTTGGGCTCCTGA+TGG | + | Chr3:50637584-50637603 | MsG0380014160.01.T01:CDS | 50.0% |
| ! | TGGAAGGAGAGCACACTTGT+GGG | - | Chr3:50636852-50636871 | None:intergenic | 50.0% |
| !! | CTTGCTTGGTGTCCTTTCCA+AGG | + | Chr3:50638076-50638095 | MsG0380014160.01.T01:CDS | 50.0% |
| AAATCAACTGGCGGCGTAGG+TGG | - | Chr3:50636949-50636968 | None:intergenic | 55.0% | |
| AGCGAGTAGGGTCTTTGGCA+TGG | + | Chr3:50637810-50637829 | MsG0380014160.01.T01:CDS | 55.0% | |
| AGGGAGCTACTCAGCTCTCA+TGG | + | Chr3:50638229-50638248 | MsG0380014160.01.T01:CDS | 55.0% | |
| CATACTCACAACCGGAGGGA+TGG | + | Chr3:50637841-50637860 | MsG0380014160.01.T01:CDS | 55.0% | |
| CTCAGTTGACACTGGGTCTC+AGG | + | Chr3:50638177-50638196 | MsG0380014160.01.T01:CDS | 55.0% | |
| CTGCAGCGGATGAAACCTTG+AGG | + | Chr3:50638377-50638396 | MsG0380014160.01.T01:CDS | 55.0% | |
| GCGCACTACATGGTGACTGA+AGG | + | Chr3:50636802-50636821 | MsG0380014160.01.T01:CDS | 55.0% | |
| GCTCCTGATGGCCGTCATAT+TGG | + | Chr3:50637596-50637615 | MsG0380014160.01.T01:CDS | 55.0% | |
| GGGCATGACCGAGAAGTTTG+CGG | + | Chr3:50637923-50637942 | MsG0380014160.01.T01:CDS | 55.0% | |
| GTTGCCACTGTCCAACCATC+TGG | - | Chr3:50638355-50638374 | None:intergenic | 55.0% | |
| TAGGCAGCGAGTAGGGTCTT+TGG | + | Chr3:50637805-50637824 | MsG0380014160.01.T01:CDS | 55.0% | |
| TCCCTCCGGTTGTGAGTATG+TGG | - | Chr3:50637841-50637860 | None:intergenic | 55.0% | |
| ! | CTGGAAGGAGAGCACACTTG+TGG | - | Chr3:50636853-50636872 | None:intergenic | 55.0% |
| CATATGGCGCAGAGCCCAGA+TGG | + | Chr3:50638337-50638356 | MsG0380014160.01.T01:CDS | 60.0% | |
| CTCACAACCGGAGGGATGGA+TGG | + | Chr3:50637845-50637864 | MsG0380014160.01.T01:CDS | 60.0% | |
| GACAGTGGCAACAGCTGCAG+CGG | + | Chr3:50638363-50638382 | MsG0380014160.01.T01:CDS | 60.0% | |
| GAGCCCAGATGGTTGGACAG+TGG | + | Chr3:50638348-50638367 | MsG0380014160.01.T01:CDS | 60.0% | |
| GCCCCGGCGAATTATTCCTC+AGG | + | Chr3:50637023-50637042 | MsG0380014160.01.T01:CDS | 60.0% | |
| GTGGGCATAGGCAGCGAGTA+GGG | + | Chr3:50637798-50637817 | MsG0380014160.01.T01:CDS | 60.0% | |
| CTAGCTACTGGCGGAGGCAG+TGG | + | Chr3:50638106-50638125 | MsG0380014160.01.T01:CDS | 65.0% | |
| GGTGGGCATAGGCAGCGAGT+AGG | + | Chr3:50637797-50637816 | MsG0380014160.01.T01:CDS | 65.0% | |
| TGGCGCAGAGCCCAGATGGT+TGG | + | Chr3:50638341-50638360 | MsG0380014160.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 50636397 | 50638587 | 50636397 | ID=MsG0380014160.01;Name=MsG0380014160.01 |
| Chr3 | mRNA | 50636397 | 50638587 | 50636397 | ID=MsG0380014160.01.T01;Parent=MsG0380014160.01;Name=MsG0380014160.01.T01;_AED=0.32;_eAED=0.32;_QI=92|1|1|1|0.66|0.5|4|95|453 |
| Chr3 | exon | 50636397 | 50636581 | 50636397 | ID=MsG0380014160.01.T01:exon:9224;Parent=MsG0380014160.01.T01 |
| Chr3 | exon | 50636757 | 50637044 | 50636757 | ID=MsG0380014160.01.T01:exon:9225;Parent=MsG0380014160.01.T01 |
| Chr3 | exon | 50637404 | 50637673 | 50637404 | ID=MsG0380014160.01.T01:exon:9226;Parent=MsG0380014160.01.T01 |
| Chr3 | exon | 50637782 | 50638587 | 50637782 | ID=MsG0380014160.01.T01:exon:9227;Parent=MsG0380014160.01.T01 |
| Chr3 | five_prime_UTR | 50636397 | 50636488 | 50636397 | ID=MsG0380014160.01.T01:five_prime_utr;Parent=MsG0380014160.01.T01 |
| Chr3 | CDS | 50636489 | 50636581 | 50636489 | ID=MsG0380014160.01.T01:cds;Parent=MsG0380014160.01.T01 |
| Chr3 | CDS | 50636757 | 50637044 | 50636757 | ID=MsG0380014160.01.T01:cds;Parent=MsG0380014160.01.T01 |
| Chr3 | CDS | 50637404 | 50637673 | 50637404 | ID=MsG0380014160.01.T01:cds;Parent=MsG0380014160.01.T01 |
| Chr3 | CDS | 50637782 | 50638492 | 50637782 | ID=MsG0380014160.01.T01:cds;Parent=MsG0380014160.01.T01 |
| Chr3 | three_prime_UTR | 50638493 | 50638587 | 50638493 | ID=MsG0380014160.01.T01:three_prime_utr;Parent=MsG0380014160.01.T01 |
| Gene Sequence |
| Protein sequence |
