AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880046014.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046014.01.T01 MTR_4g097540 98.681 455 6 0 12 466 19 473 0.0 941
MsG0880046014.01.T01 MTR_5g015020 82.112 464 70 5 12 464 19 480 0.0 792
MsG0880046014.01.T01 MTR_3g103550 69.231 416 121 3 12 426 17 426 0.0 630
MsG0880046014.01.T01 MTR_6g091760 59.856 416 157 4 12 427 29 434 0.0 535
MsG0880046014.01.T01 MTR_8g098930 55.916 431 178 4 15 443 30 450 0.0 533
MsG0880046014.01.T01 MTR_8g101750 58.057 422 159 5 12 432 27 431 0.0 517
MsG0880046014.01.T01 MTR_8g028600 54.197 417 181 2 15 431 29 435 8.24e-176 502
MsG0880046014.01.T01 MTR_7g079080 53.253 415 181 3 15 427 29 432 1.15e-170 489
MsG0880046014.01.T01 MTR_8g101820 53.791 422 164 6 12 432 27 418 3.22e-163 468
MsG0880046014.01.T01 MTR_6g463260 46.190 420 214 5 12 430 119 527 3.03e-144 423
MsG0880046014.01.T01 MTR_7g079080 52.959 338 146 3 92 427 1 327 1.10e-134 393
MsG0880046014.01.T01 MTR_5g011400 41.748 412 230 3 12 423 87 488 4.79e-124 370
MsG0880046014.01.T01 MTR_2g090730 81.720 93 13 1 50 142 12 100 3.87e-49 167
MsG0880046014.01.T01 MTR_5g033230 25.410 244 162 9 17 246 35 272 1.77e-14 75.9
MsG0880046014.01.T01 MTR_5g033230 26.966 178 122 6 72 246 100 272 1.98e-14 75.9
MsG0880046014.01.T01 MTR_8g023140 22.449 343 235 13 105 426 182 514 3.82e-13 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046014.01.T01 AT3G49700 73.568 454 107 4 12 459 19 465 0.0 681
MsG0880046014.01.T01 AT4G37770 71.491 456 118 4 15 466 22 469 0.0 681
MsG0880046014.01.T01 AT5G65800 72.687 454 111 5 12 459 19 465 0.0 671
MsG0880046014.01.T01 AT2G22810 68.035 463 133 3 12 466 19 474 0.0 659
MsG0880046014.01.T01 AT4G08040 65.695 446 143 3 12 456 17 453 0.0 624
MsG0880046014.01.T01 AT4G26200 58.273 417 165 3 12 427 33 441 0.0 515
MsG0880046014.01.T01 AT3G61510 54.589 414 176 3 15 428 29 430 2.75e-176 503
MsG0880046014.01.T01 AT1G01480 51.549 452 203 5 15 457 30 474 1.22e-172 494
MsG0880046014.01.T01 AT4G11280 53.398 412 183 2 15 426 33 435 4.28e-169 485
MsG0880046014.01.T01 AT1G01480 51.733 375 165 5 92 457 1 368 1.74e-140 409
MsG0880046014.01.T01 AT5G51690 43.705 421 226 4 5 424 77 487 1.93e-136 402
MsG0880046014.01.T01 AT1G62960 42.410 415 222 7 12 424 148 547 6.11e-123 370
MsG0880046014.01.T01 AT5G51690 42.932 382 200 4 43 424 1 364 1.27e-120 357
MsG0880046014.01.T01 AT1G23310 23.868 243 167 8 17 246 35 272 6.70e-15 77.0
MsG0880046014.01.T01 AT1G23310 23.868 243 167 8 17 246 35 272 1.20e-14 76.3
MsG0880046014.01.T01 AT1G70580 23.457 243 168 8 17 246 35 272 3.12e-14 75.1
MsG0880046014.01.T01 AT1G70580 23.457 243 168 8 17 246 35 272 3.12e-14 75.1
MsG0880046014.01.T01 AT1G70580 23.457 243 168 8 17 246 35 272 3.12e-14 75.1
MsG0880046014.01.T01 AT1G70580 23.457 243 168 8 17 246 35 272 3.12e-14 75.1
MsG0880046014.01.T01 AT2G22250 22.222 270 182 7 98 362 106 352 4.33e-13 71.2
MsG0880046014.01.T01 AT2G22250 22.222 270 182 7 98 362 153 399 5.63e-13 71.2
MsG0880046014.01.T01 AT2G22250 22.222 270 182 7 98 362 153 399 5.63e-13 71.2
MsG0880046014.01.T01 AT1G77670 24.267 375 237 16 64 424 92 433 1.06e-12 70.1
MsG0880046014.01.T01 AT2G24850 23.724 333 211 12 107 426 117 419 1.23e-11 67.0
MsG0880046014.01.T01 AT2G20610 22.778 360 229 13 81 426 111 435 4.27e-11 65.5

Find 88 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATTACTCCTTTGACTTTA+AGG 0.007055 8:-67651630 None:intergenic
CGTCAGAACAAGCTTGTTTC+GGG 0.214801 8:+67652087 MsG0880046014.01.T01:CDS
GAGAGCAAGTTCACGGAATA+TGG 0.287004 8:-67651178 None:intergenic
TCCATGACGCTGATGAAGTT+TGG 0.292320 8:-67651787 None:intergenic
GTTACTTACCCTGGATAATA+AGG 0.296953 8:-67651384 None:intergenic
ACCTGGCAAACCCAAGTCTT+TGG 0.309354 8:-67651893 None:intergenic
CAACACATTTGAAGCTGAAA+TGG 0.312708 8:+67652191 MsG0880046014.01.T01:CDS
ACGTCAGAACAAGCTTGTTT+CGG 0.332943 8:+67652086 MsG0880046014.01.T01:CDS
ACAAGCATTGGTAGATTTCA+TGG 0.337094 8:+67651233 MsG0880046014.01.T01:CDS
ACAGCAAATCTCATAGAAAA+TGG 0.342359 8:-67649832 None:intergenic
GCTTTCCAAGCAGCTAATTC+CGG 0.349870 8:-67652121 None:intergenic
CCCATTTGAATAATTCCTTT+AGG 0.350296 8:-67650956 None:intergenic
TTCGGTTACTTGAAAGTTGT+TGG 0.352316 8:-67651566 None:intergenic
CTTCCTACTCCTTATTATCC+AGG 0.362035 8:+67651375 MsG0880046014.01.T01:CDS
GAGTCCACTGGCAATGTTAA+TGG 0.369447 8:+67652369 MsG0880046014.01.T01:CDS
ACAAATATTATCAGCGTCAT+TGG 0.372388 8:-67651842 None:intergenic
GAGGAATGCTTCTCCTTTCT+CGG 0.379843 8:-67651352 None:intergenic
TCCTAAAGGAATTATTCAAA+TGG 0.384178 8:+67650955 MsG0880046014.01.T01:CDS
TCCAAAGACTTGGGTTTGCC+AGG 0.387995 8:+67651892 MsG0880046014.01.T01:CDS
TTGGAGCTTGTGCAATGTAT+TGG 0.402052 8:-67651547 None:intergenic
GTGGTGCCTAGCGGGTTTGA+TGG 0.413274 8:-67651661 None:intergenic
TTGAAGCTGAAATGGAACTA+TGG 0.421415 8:+67652199 MsG0880046014.01.T01:CDS
CATTTCAGCTTCAAATGTGT+TGG 0.425676 8:-67652190 None:intergenic
GATTTCATGGCTGAAATTAG+AGG 0.438990 8:+67651246 MsG0880046014.01.T01:CDS
CTATAGTCTTTCCAAAGACT+TGG 0.439881 8:+67651882 MsG0880046014.01.T01:CDS
AGAGATCTTAAGTGGAGAAC+TGG 0.441917 8:+67651511 MsG0880046014.01.T01:CDS
TGCTTGTTGCAATGCTTGTT+CGG 0.447826 8:-67651584 None:intergenic
GCTAAGAATCCAGATGCATC+TGG 0.449521 8:+67651135 MsG0880046014.01.T01:CDS
TTGACATTGTGGTGCCTAGC+GGG 0.450378 8:-67651669 None:intergenic
GATTTGATAGAGATCTTAAG+TGG 0.457172 8:+67651503 MsG0880046014.01.T01:intron
AGCTGCTTGGAAAGCAATGC+AGG 0.457790 8:+67652129 MsG0880046014.01.T01:CDS
TACCTTCTTTCCGCCATGCT+TGG 0.457804 8:+67652009 MsG0880046014.01.T01:CDS
ACCAATGCTTGTTTGAATGC+TGG 0.468828 8:-67651222 None:intergenic
GGATTGTGAACATTATCGTA+TGG 0.469336 8:-67650935 None:intergenic
CAGCTTCAAATGTGTTGGAA+TGG 0.474679 8:-67652185 None:intergenic
GGTTTGCCAGGTTTCCGTGT+TGG 0.478336 8:+67651904 MsG0880046014.01.T01:CDS
CTTTGAAACTAGCAATGAAA+AGG 0.480723 8:+67652328 MsG0880046014.01.T01:CDS
GCCGAAGCTTGACATCTTCG+TGG 0.488316 8:-67651965 None:intergenic
GAGAAATTTACTCACTAAGT+GGG 0.491942 8:+67652413 MsG0880046014.01.T01:CDS
CCTAAAGGAATTATTCAAAT+GGG 0.495148 8:+67650956 MsG0880046014.01.T01:CDS
GCTTTCGTTGTTGAGTCCAC+TGG 0.495466 8:+67652357 MsG0880046014.01.T01:CDS
AGAGAAATTTACTCACTAAG+TGG 0.501044 8:+67652412 MsG0880046014.01.T01:CDS
CACCAAGCATGGCGGAAAGA+AGG 0.506326 8:-67652011 None:intergenic
CCTTAAAGTCAAAGGAGTAA+TGG 0.507013 8:+67651630 MsG0880046014.01.T01:CDS
GATAATGTTCACAATCCTAA+AGG 0.507661 8:+67650941 MsG0880046014.01.T01:CDS
ACCTTGTAGGTCAGGCACTC+AGG 0.508961 8:+67649804 None:intergenic
GATTGTGAACATTATCGTAT+GGG 0.512439 8:-67650934 None:intergenic
CTGGCATGCCATGGTAGTCT+TGG 0.514145 8:-67651203 None:intergenic
TGGTGCCTAGCGGGTTTGAT+GGG 0.518811 8:-67651660 None:intergenic
TAATTCACTCCTTGACATTG+TGG 0.520906 8:-67651680 None:intergenic
GCATCTGGATTCAAAAGAGA+TGG 0.523681 8:+67651150 MsG0880046014.01.T01:CDS
TATAGTCTTTCCAAAGACTT+GGG 0.530946 8:+67651883 MsG0880046014.01.T01:CDS
TTCCTACTCCTTATTATCCA+GGG 0.533548 8:+67651376 MsG0880046014.01.T01:CDS
TCCAAACTTCATCAGCGTCA+TGG 0.537282 8:+67651786 MsG0880046014.01.T01:CDS
GCCAGCATTCAAACAAGCAT+TGG 0.538139 8:+67651221 MsG0880046014.01.T01:CDS
GCCACGAAGATGTCAAGCTT+CGG 0.543189 8:+67651964 MsG0880046014.01.T01:CDS
ATGGCGCCAACACGGAAACC+TGG 0.544960 8:-67651910 None:intergenic
CGGAGTAGATGGCGCCAACA+CGG 0.550123 8:-67651918 None:intergenic
CTTGGAAGAGAGCAAGTTCA+CGG 0.552418 8:-67651185 None:intergenic
GTTTGAATGCTGGCATGCCA+TGG 0.557856 8:-67651212 None:intergenic
TCTTGTCATTGTACAGAACC+AGG 0.559141 8:+67652267 MsG0880046014.01.T01:CDS
AAAAGCCGGAATTAGCTGCT+TGG 0.561044 8:+67652116 MsG0880046014.01.T01:CDS
GCGGTGAGAACTATGTGGTT+GGG 0.564851 8:-67651288 None:intergenic
GTGAAATGTTTAAACCAACT+TGG 0.565975 8:-67652236 None:intergenic
AAGAAAATAGTGTACCAAGT+TGG 0.566563 8:+67652222 MsG0880046014.01.T01:CDS
AAACGCAACCTTAAAGTCAA+AGG 0.585930 8:+67651622 MsG0880046014.01.T01:CDS
TGCGGTGAGAACTATGTGGT+TGG 0.600293 8:-67651289 None:intergenic
AAACACACACGAAACCAACC+TGG 0.602737 8:-67652285 None:intergenic
CATCTACTCCGAAAATGATA+CGG 0.603585 8:+67651930 MsG0880046014.01.T01:CDS
GTCATTGTACAGAACCAGGT+TGG 0.607425 8:+67652271 MsG0880046014.01.T01:CDS
AACCACATAGTTCTCACCGC+AGG 0.611056 8:+67651291 MsG0880046014.01.T01:CDS
CTGGATAATAAGGAGTAGGA+AGG 0.613137 8:-67651374 None:intergenic
GATAATAAGGAGTAGGAAGG+AGG 0.616132 8:-67651371 None:intergenic
ATAAGCGACGAGATTTACTC+CGG 0.625337 8:+67651748 MsG0880046014.01.T01:CDS
TGATCAACGTGATCAACAAG+AGG 0.629251 8:+67652455 MsG0880046014.01.T01:CDS
GTTGGTTTAAACATTTCACC+TGG 0.630672 8:+67652240 MsG0880046014.01.T01:CDS
AACGTGATCAACAAGAGGAA+CGG 0.630998 8:+67652460 MsG0880046014.01.T01:CDS
TACCCTGGATAATAAGGAGT+AGG 0.632955 8:-67651378 None:intergenic
CGCTAGGCACCACAATGTCA+AGG 0.634181 8:+67651671 MsG0880046014.01.T01:CDS
AACACCATTAACATTGCCAG+TGG 0.635347 8:-67652373 None:intergenic
CTTGACATTGTGGTGCCTAG+CGG 0.638500 8:-67651670 None:intergenic
GACGCTGATGAAGTTTGGAG+AGG 0.643971 8:-67651782 None:intergenic
ACAAACCCATCAAACCCGCT+AGG 0.648673 8:+67651655 MsG0880046014.01.T01:CDS
GCTCTCTTCCAAGACTACCA+TGG 0.688190 8:+67651195 MsG0880046014.01.T01:CDS
ATTTGCTGAAGTAGAACCTG+CGG 0.695572 8:-67651307 None:intergenic
GTACAATGACAAGATGAACC+AGG 0.699733 8:-67652258 None:intergenic
ATTGCAACAAGCATACCAAG+AGG 0.713636 8:+67651594 MsG0880046014.01.T01:CDS
AACCTGCGGTGAGAACTATG+TGG 0.788440 8:-67651293 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAAATATCTATCATTTA+TGG + Chr8:67650137-67650156 MsG0880046014.01.T01:intron 10.0%
!!! TAAGTACAAATAAATTTTTA+AGG - Chr8:67651055-67651074 None:intergenic 10.0%
!! AAACATAAAGTATATAACTT+AGG - Chr8:67649915-67649934 None:intergenic 15.0%
!! AACATAAAGTATATAACTTA+GGG - Chr8:67649914-67649933 None:intergenic 15.0%
!! ACAAAAATGATTCTATTATA+TGG + Chr8:67650538-67650557 MsG0880046014.01.T01:intron 15.0%
!! GCAAAAGAAAAAAAAAATAT+TGG - Chr8:67651083-67651102 None:intergenic 15.0%
!!! CAATCTCTAAAAAAATAAAT+TGG - Chr8:67650102-67650121 None:intergenic 15.0%
!! AAATGATTCTATTATATGGT+TGG + Chr8:67650542-67650561 MsG0880046014.01.T01:intron 20.0%
! ATAAAGTATATAACTTAGGG+AGG - Chr8:67649911-67649930 None:intergenic 25.0%
! CCTAAAGGAATTATTCAAAT+GGG + Chr8:67650956-67650975 MsG0880046014.01.T01:CDS 25.0%
! TAGAAGAAGAAAGAATGTTT+GGG - Chr8:67650775-67650794 None:intergenic 25.0%
! TAGGAAGAACCTAAAATTAA+GGG - Chr8:67650202-67650221 None:intergenic 25.0%
! TATGTTTGTTTGGATTTACT+AGG - Chr8:67650221-67650240 None:intergenic 25.0%
! TCCTAAAGGAATTATTCAAA+TGG + Chr8:67650955-67650974 MsG0880046014.01.T01:CDS 25.0%
! TTAATTGTAAGACCAATTTG+TGG - Chr8:67650364-67650383 None:intergenic 25.0%
!! TTAGACAAAATTTTCGCTTT+AGG - Chr8:67650070-67650089 None:intergenic 25.0%
!!! AGTTTTGATGTATGTTTGTT+TGG - Chr8:67650231-67650250 None:intergenic 25.0%
!!! CATTTTTGTTGTGTTTTTTG+AGG - Chr8:67650831-67650850 None:intergenic 25.0%
AAAGCAACTTGTAATAGTCA+TGG + Chr8:67650866-67650885 MsG0880046014.01.T01:intron 30.0%
AAATGTTAAATTGTGCCCTT+AGG + Chr8:67650029-67650048 MsG0880046014.01.T01:intron 30.0%
AAGAAAATAGTGTACCAAGT+TGG + Chr8:67652222-67652241 MsG0880046014.01.T01:CDS 30.0%
AATGTTAAATTGTGCCCTTA+GGG + Chr8:67650030-67650049 MsG0880046014.01.T01:intron 30.0%
ACAAATATTATCAGCGTCAT+TGG - Chr8:67651845-67651864 None:intergenic 30.0%
ACAGCAAATCTCATAGAAAA+TGG - Chr8:67649835-67649854 None:intergenic 30.0%
ACATACATCAAAACTCCTTA+AGG + Chr8:67650236-67650255 MsG0880046014.01.T01:intron 30.0%
AGAAGAAGAAAGAATGTTTG+GGG - Chr8:67650774-67650793 None:intergenic 30.0%
AGAGAAATTTACTCACTAAG+TGG + Chr8:67652412-67652431 MsG0880046014.01.T01:CDS 30.0%
CCCATTTGAATAATTCCTTT+AGG - Chr8:67650959-67650978 None:intergenic 30.0%
CTAGGAAGAACCTAAAATTA+AGG - Chr8:67650203-67650222 None:intergenic 30.0%
GAGAAATTTACTCACTAAGT+GGG + Chr8:67652413-67652432 MsG0880046014.01.T01:CDS 30.0%
GATAATGTTCACAATCCTAA+AGG + Chr8:67650941-67650960 MsG0880046014.01.T01:CDS 30.0%
GATTGTGAACATTATCGTAT+GGG - Chr8:67650937-67650956 None:intergenic 30.0%
GATTTGATAGAGATCTTAAG+TGG + Chr8:67651503-67651522 MsG0880046014.01.T01:intron 30.0%
GTAGAAGAAGAAAGAATGTT+TGG - Chr8:67650776-67650795 None:intergenic 30.0%
GTGAAATGTTTAAACCAACT+TGG - Chr8:67652239-67652258 None:intergenic 30.0%
GTGGGTGTATATATTTATAG+AGG - Chr8:67650680-67650699 None:intergenic 30.0%
TATAGTCTTTCCAAAGACTT+GGG + Chr8:67651883-67651902 MsG0880046014.01.T01:CDS 30.0%
! AAAAACAATGTTACTTACCC+TGG - Chr8:67651396-67651415 None:intergenic 30.0%
! GTTTTCAGCTAAGTAGTTTT+TGG - Chr8:67652049-67652068 None:intergenic 30.0%
! TCTTCATCTCTAGAAGAAAA+AGG + Chr8:67650586-67650605 MsG0880046014.01.T01:intron 30.0%
! TTAGCATGACCCTTAATTTT+AGG + Chr8:67650190-67650209 MsG0880046014.01.T01:intron 30.0%
!! CAATGCAGGATTATTTTGTT+GGG + Chr8:67652143-67652162 MsG0880046014.01.T01:CDS 30.0%
!! CTTTGAAACTAGCAATGAAA+AGG + Chr8:67652328-67652347 MsG0880046014.01.T01:CDS 30.0%
!!! TATTTTGTTGGGTTGATATG+AGG + Chr8:67652154-67652173 MsG0880046014.01.T01:CDS 30.0%
!!! TTTTCTATGAGATTTGCTGT+CGG + Chr8:67649835-67649854 MsG0880046014.01.T01:CDS 30.0%
!!! TTTTGTTGTGTTTTTTGAGG+TGG - Chr8:67650828-67650847 None:intergenic 30.0%
AAACGCAACCTTAAAGTCAA+AGG + Chr8:67651622-67651641 MsG0880046014.01.T01:CDS 35.0%
AAGGCCAAGATTCAATAACA+CGG + Chr8:67650255-67650274 MsG0880046014.01.T01:intron 35.0%
AATTGTTGTGAGAAGTAGTG+AGG - Chr8:67650702-67650721 None:intergenic 35.0%
AGTATATAACTTAGGGAGGA+AGG - Chr8:67649907-67649926 None:intergenic 35.0%
CATCTACTCCGAAAATGATA+CGG + Chr8:67651930-67651949 MsG0880046014.01.T01:CDS 35.0%
CATTTCAGCTTCAAATGTGT+TGG - Chr8:67652193-67652212 None:intergenic 35.0%
CCTAGTATCACTCAATAATG+AGG - Chr8:67650425-67650444 None:intergenic 35.0%
CCTCATTATTGAGTGATACT+AGG + Chr8:67650422-67650441 MsG0880046014.01.T01:intron 35.0%
CCTTAAAGTCAAAGGAGTAA+TGG + Chr8:67651630-67651649 MsG0880046014.01.T01:CDS 35.0%
CTATAGTCTTTCCAAAGACT+TGG + Chr8:67651882-67651901 MsG0880046014.01.T01:CDS 35.0%
GAAGAAGAAAGAATGTTTGG+GGG - Chr8:67650773-67650792 None:intergenic 35.0%
GATTTCATGGCTGAAATTAG+AGG + Chr8:67651246-67651265 MsG0880046014.01.T01:CDS 35.0%
GGATTGTGAACATTATCGTA+TGG - Chr8:67650938-67650957 None:intergenic 35.0%
GTTACTTACCCTGGATAATA+AGG - Chr8:67651387-67651406 None:intergenic 35.0%
TAATTCACTCCTTGACATTG+TGG - Chr8:67651683-67651702 None:intergenic 35.0%
TTCCTACTCCTTATTATCCA+GGG + Chr8:67651376-67651395 MsG0880046014.01.T01:CDS 35.0%
TTCGGTTACTTGAAAGTTGT+TGG - Chr8:67651569-67651588 None:intergenic 35.0%
TTGAAGCTGAAATGGAACTA+TGG + Chr8:67652199-67652218 MsG0880046014.01.T01:CDS 35.0%
! AGCAACAACCGTATCATTTT+CGG - Chr8:67651941-67651960 None:intergenic 35.0%
! CAACACATTTGAAGCTGAAA+TGG + Chr8:67652191-67652210 MsG0880046014.01.T01:CDS 35.0%
! CCATTACTCCTTTGACTTTA+AGG - Chr8:67651633-67651652 None:intergenic 35.0%
! CTTTTGATCTCTTGGAATCA+TGG + Chr8:67651109-67651128 MsG0880046014.01.T01:CDS 35.0%
! GTTGGTTTAAACATTTCACC+TGG + Chr8:67652240-67652259 MsG0880046014.01.T01:CDS 35.0%
!! ACAAGCATTGGTAGATTTCA+TGG + Chr8:67651233-67651252 MsG0880046014.01.T01:CDS 35.0%
!! GCAATGCAGGATTATTTTGT+TGG + Chr8:67652142-67652161 MsG0880046014.01.T01:CDS 35.0%
!! GTTATTGAATCTTGGCCTTA+AGG - Chr8:67650254-67650273 None:intergenic 35.0%
!! TACTCACTAAGTGGGTTTTT+CGG + Chr8:67652421-67652440 MsG0880046014.01.T01:CDS 35.0%
!!! GAATTTTTTGTCACCAAGCA+TGG - Chr8:67652025-67652044 None:intergenic 35.0%
AACACCATTAACATTGCCAG+TGG - Chr8:67652376-67652395 None:intergenic 40.0%
AACGTGATCAACAAGAGGAA+CGG + Chr8:67652460-67652479 MsG0880046014.01.T01:CDS 40.0%
ACCAATGCTTGTTTGAATGC+TGG - Chr8:67651225-67651244 None:intergenic 40.0%
ACTCTTCATACTTCTCAGGA+TGG + Chr8:67650894-67650913 MsG0880046014.01.T01:intron 40.0%
AGAGATCTTAAGTGGAGAAC+TGG + Chr8:67651511-67651530 MsG0880046014.01.T01:CDS 40.0%
AGAGTTTCTGCAAAACCATG+TGG + Chr8:67650627-67650646 MsG0880046014.01.T01:intron 40.0%
AGGCCAAGATTCAATAACAC+GGG + Chr8:67650256-67650275 MsG0880046014.01.T01:intron 40.0%
ATAAGCGACGAGATTTACTC+CGG + Chr8:67651748-67651767 MsG0880046014.01.T01:CDS 40.0%
ATTGCAACAAGCATACCAAG+AGG + Chr8:67651594-67651613 MsG0880046014.01.T01:CDS 40.0%
CAAGACTCTTCATACTTCTC+AGG + Chr8:67650890-67650909 MsG0880046014.01.T01:intron 40.0%
CAGCTTCAAATGTGTTGGAA+TGG - Chr8:67652188-67652207 None:intergenic 40.0%
CTCTTCATACTTCTCAGGAT+GGG + Chr8:67650895-67650914 MsG0880046014.01.T01:intron 40.0%
CTGGATAATAAGGAGTAGGA+AGG - Chr8:67651377-67651396 None:intergenic 40.0%
CTTCCTACTCCTTATTATCC+AGG + Chr8:67651375-67651394 MsG0880046014.01.T01:CDS 40.0%
GATAATAAGGAGTAGGAAGG+AGG - Chr8:67651374-67651393 None:intergenic 40.0%
GCATCTGGATTCAAAAGAGA+TGG + Chr8:67651150-67651169 MsG0880046014.01.T01:CDS 40.0%
GCATGCAGACTAAGTTGTTT+GGG - Chr8:67649877-67649896 None:intergenic 40.0%
GCTCTTAGAGCACATGTTAA+GGG - Chr8:67650165-67650184 None:intergenic 40.0%
GGGAATTCAGGTGAATTCTT+GGG - Chr8:67650310-67650329 None:intergenic 40.0%
GTACAATGACAAGATGAACC+AGG - Chr8:67652261-67652280 None:intergenic 40.0%
TACCCTGGATAATAAGGAGT+AGG - Chr8:67651381-67651400 None:intergenic 40.0%
TCTTGTCATTGTACAGAACC+AGG + Chr8:67652267-67652286 MsG0880046014.01.T01:CDS 40.0%
TGATCAACGTGATCAACAAG+AGG + Chr8:67652455-67652474 MsG0880046014.01.T01:CDS 40.0%
TGCTCTTAGAGCACATGTTA+AGG - Chr8:67650166-67650185 None:intergenic 40.0%
TGGGAATTCAGGTGAATTCT+TGG - Chr8:67650311-67650330 None:intergenic 40.0%
TTCCTTAACATGTGCCCTAA+GGG - Chr8:67650047-67650066 None:intergenic 40.0%
TTGGAGCTTGTGCAATGTAT+TGG - Chr8:67651550-67651569 None:intergenic 40.0%
! ACGTCAGAACAAGCTTGTTT+CGG + Chr8:67652086-67652105 MsG0880046014.01.T01:CDS 40.0%
! ATGTTTTGTCTTGCCGAGAA+AGG + Chr8:67651339-67651358 MsG0880046014.01.T01:CDS 40.0%
! ATTTGCTGAAGTAGAACCTG+CGG - Chr8:67651310-67651329 None:intergenic 40.0%
! CGTATCATTTTCGGAGTAGA+TGG - Chr8:67651932-67651951 None:intergenic 40.0%
! CTGAGAAGTATGAAGAGTCT+TGG - Chr8:67650892-67650911 None:intergenic 40.0%
! CTTCCCGTGTTATTGAATCT+TGG - Chr8:67650262-67650281 None:intergenic 40.0%
! CTTTTGAATCCAGATGCATC+TGG - Chr8:67651147-67651166 None:intergenic 40.0%
! TGCTTGTTGCAATGCTTGTT+CGG - Chr8:67651587-67651606 None:intergenic 40.0%
!! AAGAAGTGCTAGTGAGATAG+AGG - Chr8:67650654-67650673 None:intergenic 40.0%
!! AGAAGTGCTAGTGAGATAGA+GGG - Chr8:67650653-67650672 None:intergenic 40.0%
!! GTTTCGGGTTTACAAAAAGC+CGG + Chr8:67652102-67652121 MsG0880046014.01.T01:CDS 40.0%
!! TATGAGATTTGCTGTCGGTA+TGG + Chr8:67649840-67649859 MsG0880046014.01.T01:intron 40.0%
!!! GTTTTTTGAGGTGGTTGAGA+AGG - Chr8:67650819-67650838 None:intergenic 40.0%
!!! TTTTTTGTCACCAAGCATGG+CGG - Chr8:67652022-67652041 None:intergenic 40.0%
AAAAGCCGGAATTAGCTGCT+TGG + Chr8:67652116-67652135 MsG0880046014.01.T01:CDS 45.0%
AAACACACACGAAACCAACC+TGG - Chr8:67652288-67652307 None:intergenic 45.0%
ACTTAGGGAGGAAGGTCATA+TGG - Chr8:67649899-67649918 None:intergenic 45.0%
AGGTGAATTCTTGGGCAACA+AGG - Chr8:67650302-67650321 None:intergenic 45.0%
ATTGAGTGATACTAGGAGCG+TGG + Chr8:67650429-67650448 MsG0880046014.01.T01:intron 45.0%
CACGGGAAGAAGAATATGCT+TGG + Chr8:67650273-67650292 MsG0880046014.01.T01:intron 45.0%
CTGCGCATTATGTGCATCTA+AGG + Chr8:67649949-67649968 MsG0880046014.01.T01:intron 45.0%
CTTGGAAGAGAGCAAGTTCA+CGG - Chr8:67651188-67651207 None:intergenic 45.0%
GAGAGCAAGTTCACGGAATA+TGG - Chr8:67651181-67651200 None:intergenic 45.0%
GAGGAATGCTTCTCCTTTCT+CGG - Chr8:67651355-67651374 None:intergenic 45.0%
GAGTCCACTGGCAATGTTAA+TGG + Chr8:67652369-67652388 MsG0880046014.01.T01:CDS 45.0%
GCCAGCATTCAAACAAGCAT+TGG + Chr8:67651221-67651240 MsG0880046014.01.T01:CDS 45.0%
GCTAAGAATCCAGATGCATC+TGG + Chr8:67651135-67651154 MsG0880046014.01.T01:CDS 45.0%
GCTTTCCAAGCAGCTAATTC+CGG - Chr8:67652124-67652143 None:intergenic 45.0%
GGACTTCTCGTGATATGGTT+GGG + Chr8:67650450-67650469 MsG0880046014.01.T01:intron 45.0%
GGCATGCAGACTAAGTTGTT+TGG - Chr8:67649878-67649897 None:intergenic 45.0%
GGGAGACACTTTCCACAAAT+TGG + Chr8:67650349-67650368 MsG0880046014.01.T01:intron 45.0%
GTCATTGTACAGAACCAGGT+TGG + Chr8:67652271-67652290 MsG0880046014.01.T01:CDS 45.0%
GTTCCTTAACATGTGCCCTA+AGG - Chr8:67650048-67650067 None:intergenic 45.0%
GTTGTGAGAAGTAGTGAGGT+GGG - Chr8:67650698-67650717 None:intergenic 45.0%
TCCAAACTTCATCAGCGTCA+TGG + Chr8:67651786-67651805 MsG0880046014.01.T01:CDS 45.0%
TCCATGACGCTGATGAAGTT+TGG - Chr8:67651790-67651809 None:intergenic 45.0%
TGGACTTCTCGTGATATGGT+TGG + Chr8:67650449-67650468 MsG0880046014.01.T01:intron 45.0%
TGGAGAGGAAAAAACAGTGC+CGG - Chr8:67651770-67651789 None:intergenic 45.0%
TGTTGTGAGAAGTAGTGAGG+TGG - Chr8:67650699-67650718 None:intergenic 45.0%
TTAATCTCGCGTGGGAATTC+AGG - Chr8:67650322-67650341 None:intergenic 45.0%
TTCTCGTGATATGGTTGGGA+CGG + Chr8:67650454-67650473 MsG0880046014.01.T01:intron 45.0%
! CGTCAGAACAAGCTTGTTTC+GGG + Chr8:67652087-67652106 MsG0880046014.01.T01:CDS 45.0%
! GCAGCTCTCTTTTGATCTCT+TGG + Chr8:67651101-67651120 MsG0880046014.01.T01:intron 45.0%
!!! TACAAAAAATATTAATTTTT+AGG + Chr8:67650006-67650025 MsG0880046014.01.T01:intron 5.0%
AACCACATAGTTCTCACCGC+AGG + Chr8:67651291-67651310 MsG0880046014.01.T01:CDS 50.0%
AACCTGCGGTGAGAACTATG+TGG - Chr8:67651296-67651315 None:intergenic 50.0%
ACAAACCCATCAAACCCGCT+AGG + Chr8:67651655-67651674 MsG0880046014.01.T01:CDS 50.0%
ACCTGGCAAACCCAAGTCTT+TGG - Chr8:67651896-67651915 None:intergenic 50.0%
AGCGTGGACTTCTCGTGATA+TGG + Chr8:67650445-67650464 MsG0880046014.01.T01:intron 50.0%
AGCTGCTTGGAAAGCAATGC+AGG + Chr8:67652129-67652148 MsG0880046014.01.T01:CDS 50.0%
CACAGGGTTTAATCTCGCGT+GGG - Chr8:67650330-67650349 None:intergenic 50.0%
CACGCGAGATTAAACCCTGT+GGG + Chr8:67650329-67650348 MsG0880046014.01.T01:intron 50.0%
CTTGACATTGTGGTGCCTAG+CGG - Chr8:67651673-67651692 None:intergenic 50.0%
GACGCTGATGAAGTTTGGAG+AGG - Chr8:67651785-67651804 None:intergenic 50.0%
GCCACGAAGATGTCAAGCTT+CGG + Chr8:67651964-67651983 MsG0880046014.01.T01:CDS 50.0%
GCGGTGAGAACTATGTGGTT+GGG - Chr8:67651291-67651310 None:intergenic 50.0%
GCTCTCTTCCAAGACTACCA+TGG + Chr8:67651195-67651214 MsG0880046014.01.T01:CDS 50.0%
GCTTTCGTTGTTGAGTCCAC+TGG + Chr8:67652357-67652376 MsG0880046014.01.T01:CDS 50.0%
GTTTGAATGCTGGCATGCCA+TGG - Chr8:67651215-67651234 None:intergenic 50.0%
TACCTTCTTTCCGCCATGCT+TGG + Chr8:67652009-67652028 MsG0880046014.01.T01:CDS 50.0%
TAGTGAGATAGAGGGCCACA+TGG - Chr8:67650645-67650664 None:intergenic 50.0%
TCCAAAGACTTGGGTTTGCC+AGG + Chr8:67651892-67651911 MsG0880046014.01.T01:CDS 50.0%
TGCCCTTAGGGCACATGTTA+AGG + Chr8:67650042-67650061 MsG0880046014.01.T01:intron 50.0%
TGCGGTGAGAACTATGTGGT+TGG - Chr8:67651292-67651311 None:intergenic 50.0%
TTGACATTGTGGTGCCTAGC+GGG - Chr8:67651672-67651691 None:intergenic 50.0%
! GGTTGCGTTTTTGTGCCTCT+TGG - Chr8:67651612-67651631 None:intergenic 50.0%
!! TGTGGAAAGTGTCTCCCACA+GGG - Chr8:67650346-67650365 None:intergenic 50.0%
!! TTGTGGAAAGTGTCTCCCAC+AGG - Chr8:67650347-67650366 None:intergenic 50.0%
CCACAGGGTTTAATCTCGCG+TGG - Chr8:67650331-67650350 None:intergenic 55.0%
CCACGCGAGATTAAACCCTG+TGG + Chr8:67650328-67650347 MsG0880046014.01.T01:intron 55.0%
CGCTAGGCACCACAATGTCA+AGG + Chr8:67651671-67651690 MsG0880046014.01.T01:CDS 55.0%
CTGGCATGCCATGGTAGTCT+TGG - Chr8:67651206-67651225 None:intergenic 55.0%
GCCGAAGCTTGACATCTTCG+TGG - Chr8:67651968-67651987 None:intergenic 55.0%
GGTTTGCCAGGTTTCCGTGT+TGG + Chr8:67651904-67651923 MsG0880046014.01.T01:CDS 55.0%
TCGTGATATGGTTGGGACGG+TGG + Chr8:67650457-67650476 MsG0880046014.01.T01:intron 55.0%
! CACCAAGCATGGCGGAAAGA+AGG - Chr8:67652014-67652033 None:intergenic 55.0%
!! TGGTGCCTAGCGGGTTTGAT+GGG - Chr8:67651663-67651682 None:intergenic 55.0%
ATGGCGCCAACACGGAAACC+TGG - Chr8:67651913-67651932 None:intergenic 60.0%
CGGAGTAGATGGCGCCAACA+CGG - Chr8:67651921-67651940 None:intergenic 60.0%
!! GTGGTGCCTAGCGGGTTTGA+TGG - Chr8:67651664-67651683 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr8 gene 67649814 67652485 67649814 ID=MsG0880046014.01;Name=MsG0880046014.01
Chr8 mRNA 67649814 67652485 67649814 ID=MsG0880046014.01.T01;Parent=MsG0880046014.01;Name=MsG0880046014.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0|0|0.75|1|0.75|4|0|466
Chr8 exon 67649814 67649856 67649814 ID=MsG0880046014.01.T01:exon:648;Parent=MsG0880046014.01.T01
Chr8 exon 67650912 67650994 67650912 ID=MsG0880046014.01.T01:exon:649;Parent=MsG0880046014.01.T01
Chr8 exon 67651105 67651397 67651105 ID=MsG0880046014.01.T01:exon:650;Parent=MsG0880046014.01.T01
Chr8 exon 67651504 67652485 67651504 ID=MsG0880046014.01.T01:exon:651;Parent=MsG0880046014.01.T01
Chr8 CDS 67649814 67649856 67649814 ID=MsG0880046014.01.T01:cds;Parent=MsG0880046014.01.T01
Chr8 CDS 67650912 67650994 67650912 ID=MsG0880046014.01.T01:cds;Parent=MsG0880046014.01.T01
Chr8 CDS 67651105 67651397 67651105 ID=MsG0880046014.01.T01:cds;Parent=MsG0880046014.01.T01
Chr8 CDS 67651504 67652485 67651504 ID=MsG0880046014.01.T01:cds;Parent=MsG0880046014.01.T01
Gene Sequence

>MsG0880046014.01.T01

TCAGGCACTCAGGCTGAGCCATTTTCTATGAGATTTGCTGTCGGATGGGAAGAATACGAGAAAAACCCATACGATAATGTTCACAATCCTAAAGGAATTATTCAAATGGGTCTAGCAGAGAATCAACTCTCTTTTGATCTCTTGGAATCATGGCTAGCTAAGAATCCAGATGCATCTGGATTCAAAAGAGATGGAAAATCCATATTCCGTGAACTTGCTCTCTTCCAAGACTACCATGGCATGCCAGCATTCAAACAAGCATTGGTAGATTTCATGGCTGAAATTAGAGGAAACAAAGTTACTTTTGATCCCAACCACATAGTTCTCACCGCAGGTTCTACTTCAGCAAATGAGACTCTTATGTTTTGTCTTGCCGAGAAAGGAGAAGCATTCCTCCTTCCTACTCCTTATTATCCAGGATTTGATAGAGATCTTAAGTGGAGAACTGGTGTTGAGATTGTTCCAATACATTGCACAAGCTCCAACAACTTTCAAGTAACCGAACAAGCATTGCAACAAGCATACCAAGAGGCACAAAAACGCAACCTTAAAGTCAAAGGAGTAATGGTTACAAACCCATCAAACCCGCTAGGCACCACAATGTCAAGGAGTGAATTAAATCTTCTCGTTGACTTTATCAAAGAAAACAAAGACATGCATTTGATAAGCGACGAGATTTACTCCGGCACTGTTTTTTCCTCTCCAAACTTCATCAGCGTCATGGAAATTCTTAAAGACAGAAATGACTTTAACGACTCCAATGACGCTGATAATATTTGTGAGAGAGTTCATGTTGTCTATAGTCTTTCCAAAGACTTGGGTTTGCCAGGTTTCCGTGTTGGCGCCATCTACTCCGAAAATGATACGGTTGTTGCTGCTGCCACGAAGATGTCAAGCTTCGGCTTAATCTCGTCGCAAACACAATACCTTCTTTCCGCCATGCTTGGTGACAAAAAATTCACCAAAAACTACTTAGCTGAAAACTTAAAGAGACTTAAGAAACGTCAGAACAAGCTTGTTTCGGGTTTACAAAAAGCCGGAATTAGCTGCTTGGAAAGCAATGCAGGATTATTTTGTTGGGTTGATATGAGGCATCTTCTCCATTCCAACACATTTGAAGCTGAAATGGAACTATGGAAGAAAATAGTGTACCAAGTTGGTTTAAACATTTCACCTGGTTCATCTTGTCATTGTACAGAACCAGGTTGGTTTCGTGTGTGTTTCGCAAACATGTCAGAAGAGACTTTGAAACTAGCAATGAAAAGGTTGAAAGCTTTCGTTGTTGAGTCCACTGGCAATGTTAATGGTGTTACAACAAAAAGCACAAAGAGAAATTTACTCACTAAGTGGGTTTTTCGGTTATCGTCTCGTGATCAACGTGATCAACAAGAGGAACGGTAA
Protein sequence

>MsG0880046014.01.T01

SGTQAEPFSMRFAVGWEEYEKNPYDNVHNPKGIIQMGLAENQLSFDLLESWLAKNPDASGFKRDGKSIFRELALFQDYHGMPAFKQALVDFMAEIRGNKVTFDPNHIVLTAGSTSANETLMFCLAEKGEAFLLPTPYYPGFDRDLKWRTGVEIVPIHCTSSNNFQVTEQALQQAYQEAQKRNLKVKGVMVTNPSNPLGTTMSRSELNLLVDFIKENKDMHLISDEIYSGTVFSSPNFISVMEILKDRNDFNDSNDADNICERVHVVYSLSKDLGLPGFRVGAIYSENDTVVAAATKMSSFGLISSQTQYLLSAMLGDKKFTKNYLAENLKRLKKRQNKLVSGLQKAGISCLESNAGLFCWVDMRHLLHSNTFEAEMELWKKIVYQVGLNISPGSSCHCTEPGWFRVCFANMSEETLKLAMKRLKAFVVESTGNVNGVTTKSTKRNLLTKWVFRLSSRDQRDQQEER*