Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023768.01.T01 | XP_013447291.1 | 95.172 | 435 | 21 | 0 | 1 | 435 | 1 | 435 | 0 | 869 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023768.01.T01 | Q9STR4 | 75.758 | 429 | 95 | 3 | 10 | 429 | 16 | 444 | 0 | 666 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023768.01.T01 | A0A072TWR7 | 95.172 | 435 | 21 | 0 | 1 | 435 | 1 | 435 | 0.0 | 869 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0380014160.01 | MsG0480023768.01 | PPI |
| MsG0580029371.01 | MsG0480023768.01 | PPI |
| MsG0480023768.01 | MsG0880043113.01 | PPI |
| MsG0480023768.01 | MsG0380012860.01 | PPI |
| MsG0380014153.01 | MsG0480023768.01 | PPI |
| MsG0480023768.01 | MsG0880046014.01 | PPI |
| MsG0480023768.01 | MsG0780039769.01 | PPI |
| MsG0580024276.01 | MsG0480023768.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023768.01.T01 | MTR_8g101750 | 95.172 | 435 | 21 | 0 | 1 | 435 | 1 | 435 | 0.0 | 869 |
| MsG0480023768.01.T01 | MTR_8g101820 | 88.966 | 435 | 35 | 2 | 1 | 435 | 1 | 422 | 0.0 | 801 |
| MsG0480023768.01.T01 | MTR_6g091760 | 82.028 | 434 | 70 | 2 | 1 | 426 | 1 | 434 | 0.0 | 758 |
| MsG0480023768.01.T01 | MTR_5g015020 | 58.621 | 435 | 163 | 6 | 12 | 430 | 4 | 437 | 0.0 | 539 |
| MsG0480023768.01.T01 | MTR_4g097540 | 57.870 | 432 | 164 | 5 | 12 | 426 | 4 | 434 | 0.0 | 536 |
| MsG0480023768.01.T01 | MTR_3g103550 | 57.647 | 425 | 169 | 3 | 12 | 425 | 2 | 426 | 0.0 | 532 |
| MsG0480023768.01.T01 | MTR_8g098930 | 57.277 | 426 | 173 | 2 | 12 | 428 | 12 | 437 | 0.0 | 528 |
| MsG0480023768.01.T01 | MTR_8g028600 | 55.245 | 429 | 184 | 2 | 12 | 433 | 11 | 438 | 0.0 | 521 |
| MsG0480023768.01.T01 | MTR_7g079080 | 55.916 | 431 | 183 | 1 | 12 | 435 | 11 | 441 | 0.0 | 520 |
| MsG0480023768.01.T01 | MTR_6g463260 | 45.047 | 424 | 224 | 2 | 8 | 423 | 100 | 522 | 1.11e-144 | 423 |
| MsG0480023768.01.T01 | MTR_7g079080 | 55.952 | 336 | 148 | 0 | 100 | 435 | 1 | 336 | 1.99e-142 | 412 |
| MsG0480023768.01.T01 | MTR_5g011400 | 43.735 | 407 | 219 | 3 | 24 | 422 | 84 | 488 | 3.10e-130 | 385 |
| MsG0480023768.01.T01 | MTR_2g090730 | 55.405 | 74 | 29 | 1 | 77 | 150 | 31 | 100 | 1.13e-20 | 90.1 |
| MsG0480023768.01.T01 | MTR_8g091280 | 23.350 | 394 | 259 | 15 | 46 | 423 | 97 | 463 | 1.01e-16 | 82.4 |
| MsG0480023768.01.T01 | MTR_5g033230 | 24.611 | 321 | 219 | 13 | 72 | 372 | 90 | 407 | 2.60e-16 | 81.3 |
| MsG0480023768.01.T01 | MTR_5g033230 | 24.595 | 309 | 212 | 12 | 83 | 373 | 103 | 408 | 3.10e-16 | 80.9 |
| MsG0480023768.01.T01 | MTR_4g011820 | 22.981 | 322 | 204 | 12 | 115 | 423 | 92 | 382 | 1.21e-15 | 78.6 |
| MsG0480023768.01.T01 | MTR_2g090615 | 24.022 | 358 | 229 | 12 | 88 | 429 | 86 | 416 | 1.16e-14 | 75.9 |
| MsG0480023768.01.T01 | MTR_8g023140 | 22.102 | 371 | 261 | 14 | 78 | 425 | 149 | 514 | 6.70e-14 | 73.9 |
| MsG0480023768.01.T01 | MTR_8g061360 | 22.167 | 406 | 266 | 17 | 44 | 429 | 38 | 413 | 8.60e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023768.01.T01 | AT4G26200 | 75.758 | 429 | 95 | 3 | 10 | 429 | 16 | 444 | 0.0 | 666 |
| MsG0480023768.01.T01 | AT4G37770 | 60.000 | 425 | 160 | 2 | 12 | 426 | 4 | 428 | 0.0 | 551 |
| MsG0480023768.01.T01 | AT4G08040 | 58.768 | 422 | 167 | 1 | 12 | 426 | 2 | 423 | 0.0 | 545 |
| MsG0480023768.01.T01 | AT3G49700 | 57.534 | 438 | 170 | 4 | 11 | 433 | 3 | 439 | 0.0 | 530 |
| MsG0480023768.01.T01 | AT5G65800 | 57.746 | 426 | 170 | 3 | 11 | 426 | 3 | 428 | 0.0 | 530 |
| MsG0480023768.01.T01 | AT2G22810 | 57.176 | 425 | 171 | 3 | 10 | 423 | 2 | 426 | 0.0 | 525 |
| MsG0480023768.01.T01 | AT3G61510 | 56.161 | 422 | 175 | 2 | 12 | 426 | 11 | 429 | 0.0 | 524 |
| MsG0480023768.01.T01 | AT4G11280 | 56.250 | 432 | 182 | 1 | 4 | 428 | 7 | 438 | 0.0 | 522 |
| MsG0480023768.01.T01 | AT1G01480 | 51.598 | 438 | 202 | 3 | 1 | 428 | 1 | 438 | 1.38e-172 | 493 |
| MsG0480023768.01.T01 | AT5G51690 | 44.313 | 422 | 226 | 3 | 10 | 423 | 67 | 487 | 1.65e-138 | 406 |
| MsG0480023768.01.T01 | AT1G01480 | 52.711 | 332 | 154 | 2 | 100 | 428 | 1 | 332 | 7.69e-135 | 393 |
| MsG0480023768.01.T01 | AT1G62960 | 42.402 | 408 | 226 | 5 | 22 | 423 | 143 | 547 | 4.10e-127 | 379 |
| MsG0480023768.01.T01 | AT5G51690 | 47.230 | 343 | 180 | 1 | 81 | 423 | 23 | 364 | 9.54e-124 | 364 |
| MsG0480023768.01.T01 | AT4G23600 | 26.479 | 355 | 224 | 13 | 88 | 429 | 78 | 408 | 5.64e-19 | 89.0 |
| MsG0480023768.01.T01 | AT1G23310 | 25.632 | 277 | 188 | 9 | 83 | 344 | 103 | 376 | 6.63e-18 | 85.9 |
| MsG0480023768.01.T01 | AT5G36160 | 24.033 | 362 | 234 | 13 | 83 | 429 | 80 | 415 | 9.25e-18 | 85.5 |
| MsG0480023768.01.T01 | AT1G23310 | 25.632 | 277 | 188 | 9 | 83 | 344 | 103 | 376 | 1.10e-17 | 85.5 |
| MsG0480023768.01.T01 | AT1G70580 | 25.271 | 277 | 189 | 10 | 83 | 344 | 103 | 376 | 5.49e-17 | 83.6 |
| MsG0480023768.01.T01 | AT1G70580 | 25.271 | 277 | 189 | 10 | 83 | 344 | 103 | 376 | 5.49e-17 | 83.6 |
| MsG0480023768.01.T01 | AT1G70580 | 25.271 | 277 | 189 | 10 | 83 | 344 | 103 | 376 | 5.49e-17 | 83.6 |
| MsG0480023768.01.T01 | AT1G70580 | 25.271 | 277 | 189 | 10 | 83 | 344 | 103 | 376 | 5.49e-17 | 83.6 |
| MsG0480023768.01.T01 | AT1G72330 | 22.606 | 376 | 263 | 14 | 73 | 425 | 160 | 530 | 9.07e-17 | 82.8 |
| MsG0480023768.01.T01 | AT2G20610 | 24.791 | 359 | 225 | 14 | 88 | 429 | 109 | 439 | 2.91e-16 | 81.3 |
| MsG0480023768.01.T01 | AT1G80360 | 23.797 | 395 | 248 | 15 | 41 | 423 | 28 | 381 | 3.65e-16 | 80.5 |
| MsG0480023768.01.T01 | AT1G80360 | 23.797 | 395 | 248 | 15 | 41 | 423 | 28 | 381 | 3.65e-16 | 80.5 |
| MsG0480023768.01.T01 | AT1G80360 | 23.797 | 395 | 248 | 15 | 41 | 423 | 28 | 381 | 3.65e-16 | 80.5 |
| MsG0480023768.01.T01 | AT1G80360 | 23.797 | 395 | 248 | 15 | 41 | 423 | 28 | 381 | 3.65e-16 | 80.5 |
| MsG0480023768.01.T01 | AT1G72330 | 23.596 | 267 | 190 | 8 | 73 | 328 | 160 | 423 | 3.85e-16 | 80.5 |
| MsG0480023768.01.T01 | AT1G77670 | 24.207 | 347 | 238 | 11 | 87 | 430 | 116 | 440 | 7.04e-16 | 79.7 |
| MsG0480023768.01.T01 | AT4G23600 | 26.380 | 326 | 205 | 12 | 117 | 429 | 1 | 304 | 7.08e-16 | 78.6 |
| MsG0480023768.01.T01 | AT1G72330 | 21.851 | 389 | 263 | 14 | 73 | 425 | 160 | 543 | 4.58e-15 | 77.8 |
| MsG0480023768.01.T01 | AT1G17290 | 22.148 | 298 | 212 | 11 | 78 | 359 | 168 | 461 | 2.03e-14 | 75.5 |
| MsG0480023768.01.T01 | AT4G23600 | 25.472 | 318 | 203 | 11 | 88 | 392 | 78 | 374 | 3.12e-14 | 74.3 |
| MsG0480023768.01.T01 | AT2G20610 | 25.461 | 271 | 167 | 9 | 88 | 345 | 109 | 357 | 4.13e-14 | 74.3 |
| MsG0480023768.01.T01 | AT4G23590 | 24.432 | 352 | 235 | 12 | 88 | 429 | 78 | 408 | 1.84e-12 | 69.3 |
| MsG0480023768.01.T01 | AT5G53970 | 23.967 | 363 | 231 | 14 | 88 | 433 | 76 | 410 | 2.25e-12 | 68.9 |
| MsG0480023768.01.T01 | AT4G28410 | 25.479 | 365 | 223 | 16 | 88 | 433 | 111 | 445 | 4.54e-12 | 68.2 |
| MsG0480023768.01.T01 | AT4G28410 | 26.619 | 278 | 163 | 11 | 88 | 350 | 111 | 362 | 1.05e-11 | 67.0 |
Find 86 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAATATATTAAGATTAAT+AGG | 0.143027 | 4:-89578880 | MsG0480023768.01.T01:CDS |
| GTGATCAACCTGGTTGGTTT+AGG | 0.197998 | 4:-89578652 | MsG0480023768.01.T01:CDS |
| TGTAAGCATAGCAGAGATTC+TGG | 0.267334 | 4:-89579110 | MsG0480023768.01.T01:CDS |
| TGATCAACCTGGTTGGTTTA+GGG | 0.271865 | 4:-89578651 | MsG0480023768.01.T01:CDS |
| GCGGTGATGACTATTCTTTC+CGG | 0.294737 | 4:+89579956 | None:intergenic |
| ATAATGACAAAGAAGATATA+AGG | 0.344052 | 4:-89578554 | None:intergenic |
| ACAAACCCTTCAAACCCTTT+AGG | 0.351926 | 4:-89579247 | MsG0480023768.01.T01:CDS |
| GTCAACTAAGGAAGGTGAAT+TGG | 0.354677 | 4:-89578738 | MsG0480023768.01.T01:CDS |
| TTGAAACCATTATAATCCTC+TGG | 0.362383 | 4:+89580079 | None:intergenic |
| GATGAGTTAACTAACTCTTC+AGG | 0.373544 | 4:-89580284 | MsG0480023768.01.T01:CDS |
| GAAAACTCACCCTACTTTGC+TGG | 0.379915 | 4:-89580335 | MsG0480023768.01.T01:CDS |
| AAGTGCAATGGCAAGCTTCA+TGG | 0.383493 | 4:-89580011 | MsG0480023768.01.T01:CDS |
| TATAGTCTCTCTAAAGATCT+TGG | 0.393148 | 4:-89579046 | MsG0480023768.01.T01:CDS |
| GAAATATATTAAGATTAATA+GGG | 0.399795 | 4:-89578879 | MsG0480023768.01.T01:CDS |
| AGGAACAAGCAAGGCATCGC+CGG | 0.403862 | 4:+89579886 | None:intergenic |
| GAGTTAGTTAACTCATCATA+AGG | 0.406566 | 4:+89580290 | None:intergenic |
| GAGCACCCAGAGGATTATAA+TGG | 0.417389 | 4:-89580085 | MsG0480023768.01.T01:CDS |
| TTTGACCTGTTGCAGTGAAT+TGG | 0.417511 | 4:+89579355 | None:intergenic |
| GTTCCTACCCCGTACTATCC+AGG | 0.422363 | 4:-89579869 | MsG0480023768.01.T01:CDS |
| GGAAAGAATACGTAGCTTCA+TGG | 0.427457 | 4:-89578585 | MsG0480023768.01.T01:CDS |
| CGTTGAACTGTTATACCTAA+AGG | 0.428028 | 4:+89579232 | None:intergenic |
| GTTGAACTGTTATACCTAAA+GGG | 0.430255 | 4:+89579233 | None:intergenic |
| GTTATACCTAAAGGGTTTGA+AGG | 0.431593 | 4:+89579241 | None:intergenic |
| AATTTATTCATACAATGATA+AGG | 0.432216 | 4:-89578999 | MsG0480023768.01.T01:CDS |
| CGACTTGGTAGAAAAGTACT+TGG | 0.434235 | 4:-89580110 | MsG0480023768.01.T01:CDS |
| GATTCTTACCCTGGATAGTA+CGG | 0.435827 | 4:+89579860 | None:intergenic |
| AGATATGAAATGATTATTGA+AGG | 0.438836 | 4:-89578842 | MsG0480023768.01.T01:CDS |
| TAGTGCCAATTCACTGCAAC+AGG | 0.441325 | 4:-89579360 | MsG0480023768.01.T01:CDS |
| CTGAAATTGAATATATCTCC+AGG | 0.445529 | 4:-89578689 | MsG0480023768.01.T01:CDS |
| ACAAACTTTGGAAGTTGCAT+TGG | 0.446683 | 4:-89578606 | MsG0480023768.01.T01:CDS |
| GTAGGTTTGATAGAGACTTA+AGG | 0.446910 | 4:-89579402 | MsG0480023768.01.T01:intron |
| GGAACAAGCAAGGCATCGCC+GGG | 0.449445 | 4:+89579887 | None:intergenic |
| GCATTATTTCAAGACTATCA+TGG | 0.449699 | 4:-89580049 | MsG0480023768.01.T01:CDS |
| ATTGAAGGCTTGAAAAGTGT+TGG | 0.452654 | 4:-89578827 | MsG0480023768.01.T01:CDS |
| TTAGTTGACTCCTTCAAAAG+TGG | 0.458012 | 4:+89578752 | None:intergenic |
| GAGTGTTTGAAAGGGAATGC+AGG | 0.465675 | 4:-89578800 | MsG0480023768.01.T01:CDS |
| AGGAAGGTGAATTGGAACTT+TGG | 0.476087 | 4:-89578730 | MsG0480023768.01.T01:CDS |
| AGTTAGTTAACTCATCATAA+GGG | 0.478302 | 4:+89580291 | None:intergenic |
| AAATATGAGTGAACAAACTT+TGG | 0.478309 | 4:-89578618 | MsG0480023768.01.T01:CDS |
| GGTCTACCAGGTTTCAGAGT+TGG | 0.483669 | 4:-89579025 | MsG0480023768.01.T01:CDS |
| CTCTTCAGGAGTTATACAAA+TGG | 0.489531 | 4:-89580270 | MsG0480023768.01.T01:CDS |
| AGAGACTTAAGGTGGAGAAC+TGG | 0.493331 | 4:-89579391 | MsG0480023768.01.T01:CDS |
| CATCTCAGACGAAATCTACT+CGG | 0.501179 | 4:-89579158 | MsG0480023768.01.T01:CDS |
| GGCTTTCCATCCAGCAAAGT+AGG | 0.501359 | 4:+89580325 | None:intergenic |
| ATTCTTACCCTGGATAGTAC+GGG | 0.503055 | 4:+89579861 | None:intergenic |
| TCTAAAGATCTTGGTCTACC+AGG | 0.510586 | 4:-89579037 | MsG0480023768.01.T01:CDS |
| TCTTCAGGAGTTATACAAAT+GGG | 0.513889 | 4:-89580269 | MsG0480023768.01.T01:CDS |
| TGGTAGAGCTAAATTTGATC+CGG | 0.517167 | 4:-89579975 | MsG0480023768.01.T01:CDS |
| GCCGGGGTTTGCAAGAATGA+AGG | 0.526652 | 4:+89579904 | None:intergenic |
| ACCTTCATTCTTGCAAACCC+CGG | 0.529279 | 4:-89579905 | MsG0480023768.01.T01:CDS |
| ATTGCAATTTCTGACACTCA+TGG | 0.531513 | 4:-89580359 | MsG0480023768.01.T01:CDS |
| GTCATTGTGATCAACCTGGT+TGG | 0.538197 | 4:-89578658 | MsG0480023768.01.T01:CDS |
| TTATACCTAAAGGGTTTGAA+GGG | 0.548536 | 4:+89579242 | None:intergenic |
| TGAAACCATTATAATCCTCT+GGG | 0.550341 | 4:+89580080 | None:intergenic |
| TAAGCTGCTTCTAAAGCTTG+AGG | 0.550801 | 4:+89579316 | None:intergenic |
| AGACGAAATCTACTCGGGCT+CGG | 0.552466 | 4:-89579152 | MsG0480023768.01.T01:CDS |
| TGTGCAGGTTTCGTTCGACT+TGG | 0.553387 | 4:-89580125 | MsG0480023768.01.T01:intron |
| TTGTGTTTGTGAAGATATCA+AGG | 0.553420 | 4:+89578943 | None:intergenic |
| GGTTTGATAGAGACTTAAGG+TGG | 0.553899 | 4:-89579399 | MsG0480023768.01.T01:CDS |
| TTGAAGGAGTCAACTAAGGA+AGG | 0.555608 | 4:-89578746 | MsG0480023768.01.T01:CDS |
| AGATTTCGTCTGAGATGAGG+TGG | 0.558059 | 4:+89579164 | None:intergenic |
| GTTGGAATTGAGTGTTTGAA+AGG | 0.569169 | 4:-89578809 | MsG0480023768.01.T01:CDS |
| ATTAGCCGCAGTTGCTCCTG+CGG | 0.571832 | 4:+89579937 | None:intergenic |
| ACTCACCCTACTTTGCTGGA+TGG | 0.572647 | 4:-89580331 | MsG0480023768.01.T01:CDS |
| GGCTAATATGCTATCAGACA+AGG | 0.573142 | 4:-89578912 | MsG0480023768.01.T01:CDS |
| TTGGAATTGAGTGTTTGAAA+GGG | 0.574213 | 4:-89578808 | MsG0480023768.01.T01:CDS |
| GCTTTCCATCCAGCAAAGTA+GGG | 0.580141 | 4:+89580326 | None:intergenic |
| AGCTTCATGGAACAAATAAG+AGG | 0.582469 | 4:-89579998 | MsG0480023768.01.T01:CDS |
| TAAATCATTCAGAAGTGCAA+TGG | 0.583118 | 4:-89580023 | MsG0480023768.01.T01:CDS |
| TCTTGTCATTGTGATCAACC+TGG | 0.587957 | 4:-89578662 | MsG0480023768.01.T01:CDS |
| ATCTCAGACGAAATCTACTC+GGG | 0.596514 | 4:-89579157 | MsG0480023768.01.T01:CDS |
| TTCCTACCCCGTACTATCCA+GGG | 0.606239 | 4:-89579868 | MsG0480023768.01.T01:intron |
| TCAATGAACATGAAAGTGAG+TGG | 0.607414 | 4:-89579280 | MsG0480023768.01.T01:CDS |
| ATTGTTCCAACTCTGAAACC+TGG | 0.608322 | 4:+89579019 | None:intergenic |
| GAAAGAATAGTCATCACCGC+AGG | 0.624197 | 4:-89579953 | MsG0480023768.01.T01:CDS |
| AGTAGATTTCGTCTGAGATG+AGG | 0.631875 | 4:+89579161 | None:intergenic |
| TGAAATTGAATATATCTCCA+GGG | 0.640695 | 4:-89578688 | MsG0480023768.01.T01:CDS |
| TTCATGGAACAAATAAGAGG+TGG | 0.647531 | 4:-89579995 | MsG0480023768.01.T01:CDS |
| CATCACCGCAGGAGCAACTG+CGG | 0.654637 | 4:-89579942 | MsG0480023768.01.T01:CDS |
| TACCCTGGATAGTACGGGGT+AGG | 0.665259 | 4:+89579866 | None:intergenic |
| GTACGGGGTAGGAACAAGCA+AGG | 0.685560 | 4:+89579877 | None:intergenic |
| AAACAGACCCTAAACCAACC+AGG | 0.685588 | 4:+89578644 | None:intergenic |
| TTCTTACCCTGGATAGTACG+GGG | 0.696996 | 4:+89579862 | None:intergenic |
| TCACAATGACAAGAACACCC+TGG | 0.704106 | 4:+89578671 | None:intergenic |
| GAACAAGCAAGGCATCGCCG+GGG | 0.751656 | 4:+89579888 | None:intergenic |
| GTACTTGGAAGAGCACCCAG+AGG | 0.784244 | 4:-89580095 | MsG0480023768.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAATATATTAAGATTAAT+AGG | - | Chr4:89580077-89580096 | MsG0480023768.01.T01:CDS | 10.0% |
| !! | GAAATATATTAAGATTAATA+GGG | - | Chr4:89580078-89580097 | MsG0480023768.01.T01:CDS | 10.0% |
| !! | AATTTATTCATACAATGATA+AGG | - | Chr4:89579958-89579977 | MsG0480023768.01.T01:CDS | 15.0% |
| !! | AGATATGAAATGATTATTGA+AGG | - | Chr4:89580115-89580134 | MsG0480023768.01.T01:CDS | 20.0% |
| ! | AAATATGAGTGAACAAACTT+TGG | - | Chr4:89580339-89580358 | MsG0480023768.01.T01:CDS | 25.0% |
| ! | AGTTAGTTAACTCATCATAA+GGG | + | Chr4:89578669-89578688 | None:intergenic | 25.0% |
| ! | CACTTCATCATAAAGAAAAA+AGG | + | Chr4:89579400-89579419 | None:intergenic | 25.0% |
| ! | TATATTAATGTGTATTGTGC+AGG | - | Chr4:89578817-89578836 | MsG0480023768.01.T01:CDS | 25.0% |
| ! | TGAAATTGAATATATCTCCA+GGG | - | Chr4:89580269-89580288 | MsG0480023768.01.T01:CDS | 25.0% |
| !! | TCTTTTTCTTGTACTTTTGT+AGG | - | Chr4:89579537-89579556 | MsG0480023768.01.T01:intron | 25.0% |
| !!! | ATATTACTTGAGAGTGTTTA+TGG | + | Chr4:89579291-89579310 | None:intergenic | 25.0% |
| ATAGTTAGTTCCAAAACCAT+TGG | + | Chr4:89578798-89578817 | None:intergenic | 30.0% | |
| CTGAAATTGAATATATCTCC+AGG | - | Chr4:89580268-89580287 | MsG0480023768.01.T01:CDS | 30.0% | |
| GAGTTAGTTAACTCATCATA+AGG | + | Chr4:89578670-89578689 | None:intergenic | 30.0% | |
| GCATTATTTCAAGACTATCA+TGG | - | Chr4:89578908-89578927 | MsG0480023768.01.T01:CDS | 30.0% | |
| GTTGAACTGTTATACCTAAA+GGG | + | Chr4:89579727-89579746 | None:intergenic | 30.0% | |
| TCTTCAGGAGTTATACAAAT+GGG | - | Chr4:89578688-89578707 | MsG0480023768.01.T01:CDS | 30.0% | |
| TGAAACCATTATAATCCTCT+GGG | + | Chr4:89578880-89578899 | None:intergenic | 30.0% | |
| TTATACCTAAAGGGTTTGAA+GGG | + | Chr4:89579718-89579737 | None:intergenic | 30.0% | |
| TTGAAACCATTATAATCCTC+TGG | + | Chr4:89578881-89578900 | None:intergenic | 30.0% | |
| TTGGAATTGAGTGTTTGAAA+GGG | - | Chr4:89580149-89580168 | MsG0480023768.01.T01:intron | 30.0% | |
| TTGTGTTTGTGAAGATATCA+AGG | + | Chr4:89580017-89580036 | None:intergenic | 30.0% | |
| ! | ATCATAAGGGTTTTCATCAT+AGG | + | Chr4:89578656-89578675 | None:intergenic | 30.0% |
| ! | TAAATCATTCAGAAGTGCAA+TGG | - | Chr4:89578934-89578953 | MsG0480023768.01.T01:CDS | 30.0% |
| ! | TATAGTCTCTCTAAAGATCT+TGG | - | Chr4:89579911-89579930 | MsG0480023768.01.T01:CDS | 30.0% |
| ! | TTCACAAACACAACAGTTTT+TGG | - | Chr4:89580024-89580043 | MsG0480023768.01.T01:CDS | 30.0% |
| !! | ACTATTTTTCATAACTCTCG+AGG | + | Chr4:89579244-89579263 | None:intergenic | 30.0% |
| AAACCATTGGTGAACGAATT+AGG | + | Chr4:89578785-89578804 | None:intergenic | 35.0% | |
| AGCTTCATGGAACAAATAAG+AGG | - | Chr4:89578959-89578978 | MsG0480023768.01.T01:CDS | 35.0% | |
| ATTGCAATTTCTGACACTCA+TGG | - | Chr4:89578598-89578617 | MsG0480023768.01.T01:CDS | 35.0% | |
| CGTTGAACTGTTATACCTAA+AGG | + | Chr4:89579728-89579747 | None:intergenic | 35.0% | |
| CTCTTCAGGAGTTATACAAA+TGG | - | Chr4:89578687-89578706 | MsG0480023768.01.T01:CDS | 35.0% | |
| GAATCAAGCACCATACAATA+CGG | - | Chr4:89579115-89579134 | MsG0480023768.01.T01:CDS | 35.0% | |
| GATGAGTTAACTAACTCTTC+AGG | - | Chr4:89578673-89578692 | MsG0480023768.01.T01:CDS | 35.0% | |
| GTAGGTTTGATAGAGACTTA+AGG | - | Chr4:89579555-89579574 | MsG0480023768.01.T01:intron | 35.0% | |
| GTTATACCTAAAGGGTTTGA+AGG | + | Chr4:89579719-89579738 | None:intergenic | 35.0% | |
| GTTGGAATTGAGTGTTTGAA+AGG | - | Chr4:89580148-89580167 | MsG0480023768.01.T01:intron | 35.0% | |
| TCAATGAACATGAAAGTGAG+TGG | - | Chr4:89579677-89579696 | MsG0480023768.01.T01:intron | 35.0% | |
| TGGTAGAGCTAAATTTGATC+CGG | - | Chr4:89578982-89579001 | MsG0480023768.01.T01:CDS | 35.0% | |
| TTCATGGAACAAATAAGAGG+TGG | - | Chr4:89578962-89578981 | MsG0480023768.01.T01:CDS | 35.0% | |
| ! | AATTCGTTCACCAATGGTTT+TGG | - | Chr4:89578785-89578804 | MsG0480023768.01.T01:CDS | 35.0% |
| ! | ACAAACTTTGGAAGTTGCAT+TGG | - | Chr4:89580351-89580370 | MsG0480023768.01.T01:CDS | 35.0% |
| ! | ATTGAAGGCTTGAAAAGTGT+TGG | - | Chr4:89580130-89580149 | MsG0480023768.01.T01:intron | 35.0% |
| ! | TTAGTTGACTCCTTCAAAAG+TGG | + | Chr4:89580208-89580227 | None:intergenic | 35.0% |
| !! | ACTTTTGAAGGAGTCAACTA+AGG | - | Chr4:89580207-89580226 | MsG0480023768.01.T01:intron | 35.0% |
| !! | GAATTTGAGTCCACTTTTGA+AGG | - | Chr4:89580195-89580214 | MsG0480023768.01.T01:intron | 35.0% |
| AAGCTAGCTAGCTAGCTAAA+AGG | + | Chr4:89579436-89579455 | None:intergenic | 40.0% | |
| ACAAACCCTTCAAACCCTTT+AGG | - | Chr4:89579710-89579729 | MsG0480023768.01.T01:intron | 40.0% | |
| ACATATAGTCTACGCAAGCA+TGG | + | Chr4:89579498-89579517 | None:intergenic | 40.0% | |
| AGGAAGGTGAATTGGAACTT+TGG | - | Chr4:89580227-89580246 | MsG0480023768.01.T01:intron | 40.0% | |
| ATCTCAGACGAAATCTACTC+GGG | - | Chr4:89579800-89579819 | MsG0480023768.01.T01:intron | 40.0% | |
| ATTCTTACCCTGGATAGTAC+GGG | + | Chr4:89579099-89579118 | None:intergenic | 40.0% | |
| CATCTCAGACGAAATCTACT+CGG | - | Chr4:89579799-89579818 | MsG0480023768.01.T01:intron | 40.0% | |
| CCAAACATAGCCGTATTGTA+TGG | + | Chr4:89579128-89579147 | None:intergenic | 40.0% | |
| CCATACAATACGGCTATGTT+TGG | - | Chr4:89579125-89579144 | MsG0480023768.01.T01:CDS | 40.0% | |
| GATTCTTACCCTGGATAGTA+CGG | + | Chr4:89579100-89579119 | None:intergenic | 40.0% | |
| GGAAAGAATACGTAGCTTCA+TGG | - | Chr4:89580372-89580391 | MsG0480023768.01.T01:CDS | 40.0% | |
| GGCTAATATGCTATCAGACA+AGG | - | Chr4:89580045-89580064 | MsG0480023768.01.T01:CDS | 40.0% | |
| GGTTTGATAGAGACTTAAGG+TGG | - | Chr4:89579558-89579577 | MsG0480023768.01.T01:intron | 40.0% | |
| GTCAACTAAGGAAGGTGAAT+TGG | - | Chr4:89580219-89580238 | MsG0480023768.01.T01:intron | 40.0% | |
| TCTAAAGATCTTGGTCTACC+AGG | - | Chr4:89579920-89579939 | MsG0480023768.01.T01:CDS | 40.0% | |
| TCTTGTCATTGTGATCAACC+TGG | - | Chr4:89580295-89580314 | MsG0480023768.01.T01:CDS | 40.0% | |
| TGTAAGCATAGCAGAGATTC+TGG | - | Chr4:89579847-89579866 | MsG0480023768.01.T01:intron | 40.0% | |
| TTGAAGGAGTCAACTAAGGA+AGG | - | Chr4:89580211-89580230 | MsG0480023768.01.T01:intron | 40.0% | |
| TTTGACCTGTTGCAGTGAAT+TGG | + | Chr4:89579605-89579624 | None:intergenic | 40.0% | |
| ! | AGTAGATTTCGTCTGAGATG+AGG | + | Chr4:89579799-89579818 | None:intergenic | 40.0% |
| !! | ATTGTTCCAACTCTGAAACC+TGG | + | Chr4:89579941-89579960 | None:intergenic | 40.0% |
| !! | CGACTTGGTAGAAAAGTACT+TGG | - | Chr4:89578847-89578866 | MsG0480023768.01.T01:CDS | 40.0% |
| !! | GGAATGCAGGATTGTTTTGT+TGG | - | Chr4:89580170-89580189 | MsG0480023768.01.T01:intron | 40.0% |
| !! | TAAGCTGCTTCTAAAGCTTG+AGG | + | Chr4:89579644-89579663 | None:intergenic | 40.0% |
| !! | TGATCAACCTGGTTGGTTTA+GGG | - | Chr4:89580306-89580325 | MsG0480023768.01.T01:CDS | 40.0% |
| AAACAGACCCTAAACCAACC+AGG | + | Chr4:89580316-89580335 | None:intergenic | 45.0% | |
| AAGTGCAATGGCAAGCTTCA+TGG | - | Chr4:89578946-89578965 | MsG0480023768.01.T01:CDS | 45.0% | |
| ACCTTCATTCTTGCAAACCC+CGG | - | Chr4:89579052-89579071 | MsG0480023768.01.T01:CDS | 45.0% | |
| AGAGACTTAAGGTGGAGAAC+TGG | - | Chr4:89579566-89579585 | MsG0480023768.01.T01:intron | 45.0% | |
| ATGGTGCTTGATTCTTACCC+TGG | + | Chr4:89579109-89579128 | None:intergenic | 45.0% | |
| GAAAACTCACCCTACTTTGC+TGG | - | Chr4:89578622-89578641 | MsG0480023768.01.T01:CDS | 45.0% | |
| GAAAGAATAGTCATCACCGC+AGG | - | Chr4:89579004-89579023 | MsG0480023768.01.T01:CDS | 45.0% | |
| GAGCACCCAGAGGATTATAA+TGG | - | Chr4:89578872-89578891 | MsG0480023768.01.T01:CDS | 45.0% | |
| GAGTGTTTGAAAGGGAATGC+AGG | - | Chr4:89580157-89580176 | MsG0480023768.01.T01:intron | 45.0% | |
| GCGGTGATGACTATTCTTTC+CGG | + | Chr4:89579004-89579023 | None:intergenic | 45.0% | |
| GCTCCTAATTCGTTCACCAA+TGG | - | Chr4:89578779-89578798 | MsG0480023768.01.T01:CDS | 45.0% | |
| GCTTTCCATCCAGCAAAGTA+GGG | + | Chr4:89578634-89578653 | None:intergenic | 45.0% | |
| GTCATTGTGATCAACCTGGT+TGG | - | Chr4:89580299-89580318 | MsG0480023768.01.T01:CDS | 45.0% | |
| TAGTGCCAATTCACTGCAAC+AGG | - | Chr4:89579597-89579616 | MsG0480023768.01.T01:intron | 45.0% | |
| TCACAATGACAAGAACACCC+TGG | + | Chr4:89580289-89580308 | None:intergenic | 45.0% | |
| TTCTTACCCTGGATAGTACG+GGG | + | Chr4:89579098-89579117 | None:intergenic | 45.0% | |
| ! | AGATTTCGTCTGAGATGAGG+TGG | + | Chr4:89579796-89579815 | None:intergenic | 45.0% |
| !! | GTGATCAACCTGGTTGGTTT+AGG | - | Chr4:89580305-89580324 | MsG0480023768.01.T01:CDS | 45.0% |
| ACTCACCCTACTTTGCTGGA+TGG | - | Chr4:89578626-89578645 | MsG0480023768.01.T01:CDS | 50.0% | |
| AGACGAAATCTACTCGGGCT+CGG | - | Chr4:89579805-89579824 | MsG0480023768.01.T01:intron | 50.0% | |
| GGCTTTCCATCCAGCAAAGT+AGG | + | Chr4:89578635-89578654 | None:intergenic | 50.0% | |
| GGTCTACCAGGTTTCAGAGT+TGG | - | Chr4:89579932-89579951 | MsG0480023768.01.T01:CDS | 50.0% | |
| TGTGCAGGTTTCGTTCGACT+TGG | - | Chr4:89578832-89578851 | MsG0480023768.01.T01:CDS | 50.0% | |
| TTCCTACCCCGTACTATCCA+GGG | - | Chr4:89579089-89579108 | MsG0480023768.01.T01:CDS | 50.0% | |
| ATTAGCCGCAGTTGCTCCTG+CGG | + | Chr4:89579023-89579042 | None:intergenic | 55.0% | |
| GCCGGGGTTTGCAAGAATGA+AGG | + | Chr4:89579056-89579075 | None:intergenic | 55.0% | |
| GTACGGGGTAGGAACAAGCA+AGG | + | Chr4:89579083-89579102 | None:intergenic | 55.0% | |
| GTTCCTACCCCGTACTATCC+AGG | - | Chr4:89579088-89579107 | MsG0480023768.01.T01:CDS | 55.0% | |
| TACCCTGGATAGTACGGGGT+AGG | + | Chr4:89579094-89579113 | None:intergenic | 55.0% | |
| !! | AGGAACAAGCAAGGCATCGC+CGG | + | Chr4:89579074-89579093 | None:intergenic | 55.0% |
| !! | GTACTTGGAAGAGCACCCAG+AGG | - | Chr4:89578862-89578881 | MsG0480023768.01.T01:CDS | 55.0% |
| CATCACCGCAGGAGCAACTG+CGG | - | Chr4:89579015-89579034 | MsG0480023768.01.T01:CDS | 60.0% | |
| !! | GAACAAGCAAGGCATCGCCG+GGG | + | Chr4:89579072-89579091 | None:intergenic | 60.0% |
| !! | GGAACAAGCAAGGCATCGCC+GGG | + | Chr4:89579073-89579092 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 89578556 | 89580423 | 89578556 | ID=MsG0480023768.01;Name=MsG0480023768.01 |
| Chr4 | mRNA | 89578556 | 89580423 | 89578556 | ID=MsG0480023768.01.T01;Parent=MsG0480023768.01;Name=MsG0480023768.01.T01;_AED=0.27;_eAED=0.27;_QI=0|0|0|1|1|1|3|0|435 |
| Chr4 | exon | 89580253 | 89580423 | 89580253 | ID=MsG0480023768.01.T01:exon:25357;Parent=MsG0480023768.01.T01 |
| Chr4 | exon | 89579869 | 89580140 | 89579869 | ID=MsG0480023768.01.T01:exon:25356;Parent=MsG0480023768.01.T01 |
| Chr4 | exon | 89578556 | 89579420 | 89578556 | ID=MsG0480023768.01.T01:exon:25355;Parent=MsG0480023768.01.T01 |
| Chr4 | CDS | 89580253 | 89580423 | 89580253 | ID=MsG0480023768.01.T01:cds;Parent=MsG0480023768.01.T01 |
| Chr4 | CDS | 89579869 | 89580140 | 89579869 | ID=MsG0480023768.01.T01:cds;Parent=MsG0480023768.01.T01 |
| Chr4 | CDS | 89578556 | 89579420 | 89578556 | ID=MsG0480023768.01.T01:cds;Parent=MsG0480023768.01.T01 |
| Gene Sequence |
| Protein sequence |
