AlfalfaGEDB | MsG0480023921.01

M. sativa cultivar ZhongmuNo.1 / MsG0480023921.01

KEGG: -
GO: -
PFAM: PF04749

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480023921.01.T01	XP_003630911.1	43.195	169	9	3	1	82	1	169	8.71E-27	106

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480023921.01.T01	Q9LQU4	78.947	38	8	0	20	57	31	68	4.21E-15	68.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480023921.01.T01	G7LAH9	43.195	169	9	3	1	82	1	169	4.16e-27	106

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047831.01	MsG0480023921.01	0.818141	2.287939e-52	1.698635e-49
MsG0080048036.01	MsG0480023921.01	0.889533	2.224326e-73	1.801517e-69
MsG0080048301.01	MsG0480023921.01	0.838031	3.660428e-57	4.842756e-54
MsG0080048347.01	MsG0480023921.01	0.860282	2.303148e-63	6.261721e-60
MsG0080048349.01	MsG0480023921.01	0.810342	1.208686e-50	7.267316e-48
MsG0080048352.01	MsG0480023921.01	0.854503	1.178766e-61	2.638284e-58
MsG0080049066.01	MsG0480023921.01	-0.801905	7.222764e-49	3.490371e-46
MsG0080049133.01	MsG0480023921.01	-0.807184	5.722609e-50	3.166425e-47
MsG0180000234.01	MsG0480023921.01	0.881080	3.230219e-70	1.866086e-66
MsG0180000929.01	MsG0480023921.01	0.826265	2.982234e-54	2.783039e-51

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480023921.01.T01	MTR_8g104890	43.195	169	9	3	1	82	1	169	1.05e-30	106
MsG0480023921.01.T01	MTR_5g017650	78.571	42	9	0	16	57	66	107	4.42e-18	74.3
MsG0480023921.01.T01	MTR_8g104870	72.093	43	12	0	15	57	62	104	8.51e-16	68.6
MsG0480023921.01.T01	MTR_8g104830	62.857	35	13	0	20	54	24	58	4.33e-11	55.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480023921.01.T01	AT1G14870	78.947	38	8	0	20	57	31	68	4.29e-16	68.6
MsG0480023921.01.T01	AT1G14870	78.947	38	8	0	20	57	31	68	5.62e-16	67.8
MsG0480023921.01.T01	AT1G68610	71.429	35	10	0	20	54	34	68	1.19e-13	62.4
MsG0480023921.01.T01	AT1G14880	71.429	35	10	0	20	54	30	64	9.83e-12	57.4
MsG0480023921.01.T01	AT3G18470	38.961	77	37	2	14	80	14	90	1.32e-11	56.6
MsG0480023921.01.T01	AT5G35525	60.526	38	15	0	20	57	31	68	1.90e-11	56.6

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Find 23 sgRNAs with CRISPR-Local

Find 67 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGTGGCACAAGGAACCA+GGG	0.671495	4:+91272397	MsG0480023921.01.T01:CDS
AAATTGGCTATAGGGTGGCA+TGG	0.569669	4:+91272374	MsG0480023921.01.T01:intron
AAGGAACCAGGGAGTAGCCA+TGG	0.612064	4:+91272408	MsG0480023921.01.T01:CDS
AATCTCAGCAATTCGTCCAA+AGG	0.597233	4:-91271694	None:intergenic
AATTGCTGAGATTGTTGACA+AGG	0.603304	4:+91271704	MsG0480023921.01.T01:CDS
ATTCGTCCAAAGGTGATGCA+TGG	0.598061	4:-91271684	None:intergenic
ATTGCAGCTTGTGCTGTAAG+CGG	0.567979	4:+91271821	MsG0480023921.01.T01:intron
ATTGCTGAGATTGTTGACAA+GGG	0.678367	4:+91271705	MsG0480023921.01.T01:CDS
CACCGGAAACCGGTGGCTGG+TGG	0.556751	4:-91271460	None:intergenic
CGAGTCATGTGTTCAACTGC+TGG	0.481564	4:-91272442	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTGCTGAGATTGTTGACA+AGG	+	Chr4:91271704-91271723	MsG0480023921.01.T01:CDS	35.0%
ATTGCTGAGATTGTTGACAA+GGG	+	Chr4:91271705-91271724	MsG0480023921.01.T01:CDS	35.0%
TGAACTAAGCAATCACAACA+AGG	-	Chr4:91271944-91271963	None:intergenic	35.0%
AATCTCAGCAATTCGTCCAA+AGG	-	Chr4:91271697-91271716	None:intergenic	40.0%
AATGGACGGTCCAAATTAAG+TGG	-	Chr4:91271584-91271603	None:intergenic	40.0%
ATTTGTACCATTGTCGCATC+TGG	+	Chr4:91272299-91272318	MsG0480023921.01.T01:intron	40.0%
CAAGTTCCATGTCAAATCCA+CGG	-	Chr4:91272018-91272037	None:intergenic	40.0%
TGAAAACCGTGGATTTGACA+TGG	+	Chr4:91272009-91272028	MsG0480023921.01.T01:intron	40.0%
AAATGTGGCACAAGGAACCA+GGG	+	Chr4:91272397-91272416	MsG0480023921.01.T01:CDS	45.0%
AAATTGGCTATAGGGTGGCA+TGG	+	Chr4:91272374-91272393	MsG0480023921.01.T01:intron	45.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	91271418	91272468	91271418	ID=MsG0480023921.01;Name=MsG0480023921.01
Chr4	mRNA	91271418	91272468	91271418	ID=MsG0480023921.01.T01;Parent=MsG0480023921.01;Name=MsG0480023921.01.T01;_AED=0.50;_eAED=0.55;_QI=0\|0\|0\|1\|0.66\|0.75\|4\|0\|82
Chr4	exon	91271418	91271472	91271418	ID=MsG0480023921.01.T01:exon:13251;Parent=MsG0480023921.01.T01
Chr4	exon	91271664	91271735	91271664	ID=MsG0480023921.01.T01:exon:13252;Parent=MsG0480023921.01.T01
Chr4	exon	91271828	91271867	91271828	ID=MsG0480023921.01.T01:exon:13253;Parent=MsG0480023921.01.T01
Chr4	exon	91272387	91272468	91272387	ID=MsG0480023921.01.T01:exon:13254;Parent=MsG0480023921.01.T01
Chr4	CDS	91271418	91271472	91271418	ID=MsG0480023921.01.T01:cds;Parent=MsG0480023921.01.T01
Chr4	CDS	91271664	91271735	91271664	ID=MsG0480023921.01.T01:cds;Parent=MsG0480023921.01.T01
Chr4	CDS	91271828	91271867	91271828	ID=MsG0480023921.01.T01:cds;Parent=MsG0480023921.01.T01
Chr4	CDS	91272387	91272468	91272387	ID=MsG0480023921.01.T01:cds;Parent=MsG0480023921.01.T01

Gene Sequence	>MsG0480023921.01.T01 ATGAATCCTCCAAGTTCAAAATTCCAACAACCGTACAATCAGCCACCAGCCACCGGTTGCATAACGTTTTGGTGTCCATGCATCACCTTTGGACGAATTGCTGAGATTGTTGACAAGGGATCAACTTCTTGTGCTGTAAGCGGGGCTCTATATACATTAATTTGTGTGGTGGCATGGAAATGTGGCACAAGGAACCAGGGAGTAGCCATGGCACCAACAGCTCCAGCAGTTGAACACATGACTCGTTGA
Protein sequence	>MsG0480023921.01.T01 MNPPSSKFQQPYNQPPATGCITFWCPCITFGRIAEIVDKGSTSCAVSGALYTLICVVAWKCGTRNQGVAMAPTAPAVEHMTR*