AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080049066.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080049066.01.T01 MTR_3g105050 96.943 229 5 1 4 230 2 230 2.87e-161 445
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080049066.01.T01 AT2G26340 53.191 235 100 4 1 230 24 253 1.03e-69 214
MsG0080049066.01.T01 AT2G26340 51.915 235 100 5 1 230 24 250 4.87e-65 202

Find 15 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCTGTTTCCACGTCTTCC+CGG 0.329619 contig645end:-13566 None:intergenic
ACCGTCAGACGTGTTAAGTA+AGG 0.459060 contig645end:+13515 MsG0080049066.01.T01:exon
CTGACGGTACCGTTTGTAAG+AGG 0.470661 contig645end:-13500 None:intergenic
TAGCTGATTCATACTTGGAC+CGG 0.479874 contig645end:+13547 MsG0080049066.01.T01:exon
GGTTATAGCTGATTCATACT+TGG 0.482554 contig645end:+13542 MsG0080049066.01.T01:exon
AGACGTGGAAACAGAGAACT+TGG 0.501675 contig645end:+13572 MsG0080049066.01.T01:exon
GAAACAGAGAACTTGGACCC+TGG 0.506908 contig645end:+13579 MsG0080049066.01.T01:exon
TGGTTTCAGCCTCTTACAAA+CGG 0.513105 contig645end:+13491 MsG0080049066.01.T01:intron
GATTCTAATTGCTTTAAACC+AGG 0.530046 contig645end:-13597 None:intergenic
CCCTTACTTAACACGTCTGA+CGG 0.543771 contig645end:-13516 None:intergenic
ATTCTAATTGCTTTAAACCA+GGG 0.552324 contig645end:-13596 None:intergenic
AGCTGATTCATACTTGGACC+GGG 0.583181 contig645end:+13548 MsG0080049066.01.T01:exon
AGACGTGTTAAGTAAGGGAA+AGG 0.583469 contig645end:+13521 MsG0080049066.01.T01:exon
ATACTTGGACCGGGAAGACG+TGG 0.614514 contig645end:+13557 MsG0080049066.01.T01:exon
CCGTCAGACGTGTTAAGTAA+GGG 0.623574 contig645end:+13516 MsG0080049066.01.T01:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTTTTGCTTAAATT+TGG + contig645end:10359-10378 MsG0080049066.01.T01:intron 10.0%
!!! TTTGATTTAATTAAACTTTA+GGG - contig645end:10669-10688 None:intergenic 10.0%
!! ATGATACAATTAGTATTAAA+CGG + contig645end:11165-11184 MsG0080049066.01.T01:intron 15.0%
!! CAATAAAAATGTCAAAATAA+TGG - contig645end:13283-13302 None:intergenic 15.0%
!! TCAAAAAAAAATTACGAAAT+AGG - contig645end:10874-10893 None:intergenic 15.0%
!! TTATTTGAATGATACTTTAT+TGG + contig645end:10787-10806 MsG0080049066.01.T01:intron 15.0%
!!! AAATGTTTTCACAAAATAAA+CGG - contig645end:13126-13145 None:intergenic 15.0%
!!! GTTTGATTTAATTAAACTTT+AGG - contig645end:10670-10689 None:intergenic 15.0%
!!! TATTTCGTAATTTTTTTTTG+AGG + contig645end:10873-10892 MsG0080049066.01.T01:intron 15.0%
!!! TATTTTCGTAATAATTTTTG+CGG - contig645end:12802-12821 None:intergenic 15.0%
!!! TTTTTTTTTCTTTCTGTTTA+CGG + contig645end:10226-10245 MsG0080049066.01.T01:intron 15.0%
!! AAAGTAAATGATGATAAACA+TGG - contig645end:12639-12658 None:intergenic 20.0%
!! AAATGATTAAAAAGAGAAAG+AGG - contig645end:10209-10228 None:intergenic 20.0%
!! AACAAATATCATATCAACAA+TGG - contig645end:12595-12614 None:intergenic 20.0%
!! AAGTGTATATATACTTAAGT+CGG + contig645end:12407-12426 MsG0080049066.01.T01:intron 20.0%
!! ACAAATATCATATCAACAAT+GGG - contig645end:12594-12613 None:intergenic 20.0%
!! ATATTAAGAATATCATCAGA+TGG - contig645end:13466-13485 None:intergenic 20.0%
!! ATTACAGAAAAAACTTTAGA+GGG + contig645end:12108-12127 MsG0080049066.01.T01:intron 20.0%
!! ATTATCCATATCAAAAATAC+TGG - contig645end:11312-11331 None:intergenic 20.0%
!! CATTCAAATAATGTCTAAAA+TGG - contig645end:10778-10797 None:intergenic 20.0%
!! TATTACAGAAAAAACTTTAG+AGG + contig645end:12107-12126 MsG0080049066.01.T01:intron 20.0%
!! TTACGTATTAATATCATACT+TGG + contig645end:11815-11834 MsG0080049066.01.T01:intron 20.0%
!! TTATCCATATCAAAAATACT+GGG - contig645end:11311-11330 None:intergenic 20.0%
!!! AAAATGTTTTCGCAAAATAA+TGG + contig645end:13390-13409 MsG0080049066.01.T01:intron 20.0%
!!! AAATGTTTTCGCAAAATAAT+GGG + contig645end:13391-13410 MsG0080049066.01.T01:intron 20.0%
!!! AATAACATTGCATTCTAAAA+GGG - contig645end:10844-10863 None:intergenic 20.0%
!!! AATGTTTTCACAAAATAAAC+GGG - contig645end:13125-13144 None:intergenic 20.0%
!!! ATTTTCGTAATAATTTTTGC+GGG - contig645end:12801-12820 None:intergenic 20.0%
!!! GAACAATTGTTTACATTTTT+TGG - contig645end:13309-13328 None:intergenic 20.0%
!!! GTTTTTCATAATCATAAAAC+TGG - contig645end:12846-12865 None:intergenic 20.0%
!!! TGATATTCTTAATATGCTTT+TGG + contig645end:13471-13490 MsG0080049066.01.T01:intron 20.0%
!!! TGCTTTTTATAATTTGTACT+GGG + contig645end:11556-11575 MsG0080049066.01.T01:intron 20.0%
!!! TTGCTTTTTATAATTTGTAC+TGG + contig645end:11555-11574 MsG0080049066.01.T01:intron 20.0%
! AAATCACAAATCCAAAACAA+GGG - contig645end:10409-10428 None:intergenic 25.0%
! AACCAAGACTTATTTCAATT+AGG + contig645end:11220-11239 MsG0080049066.01.T01:intron 25.0%
! ACCAAGACTTATTTCAATTA+GGG + contig645end:11221-11240 MsG0080049066.01.T01:intron 25.0%
! AGCTACTCTAATTTAATTCA+AGG - contig645end:11528-11547 None:intergenic 25.0%
! CTTATTATGTACAGGAAAAA+GGG - contig645end:13042-13061 None:intergenic 25.0%
! GAATAACATTGCATTCTAAA+AGG - contig645end:10845-10864 None:intergenic 25.0%
! GAATCAGAATTATCATTCTT+TGG - contig645end:11625-11644 None:intergenic 25.0%
! GATAAAGTGCAAACATATTA+GGG + contig645end:10910-10929 MsG0080049066.01.T01:intron 25.0%
! TAAGCCTTGATTAAACAAAT+TGG - contig645end:10468-10487 None:intergenic 25.0%
! TCTTCTTTCATTGGTAAATT+TGG + contig645end:11914-11933 MsG0080049066.01.T01:intron 25.0%
! TTATGGACAAATATGTTAAG+AGG + contig645end:10329-10348 MsG0080049066.01.T01:CDS 25.0%
! TTCTCAAAGAATGAACAAAA+AGG - contig645end:10981-11000 None:intergenic 25.0%
! TTCTGTAATAGTAGAAAGAA+AGG - contig645end:12097-12116 None:intergenic 25.0%
!! AATATCATACTTGGTTCTTA+TGG + contig645end:11824-11843 MsG0080049066.01.T01:intron 25.0%
!! ACATATAAGCTATACTTTTC+CGG + contig645end:11119-11138 MsG0080049066.01.T01:intron 25.0%
!! ATTCTAATTGCTTTAAACCA+GGG - contig645end:13599-13618 None:intergenic 25.0%
!! GAAAAACTTTTAACATCCAA+AGG - contig645end:12269-12288 None:intergenic 25.0%
!! GAATCCAATTTGTTTAATCA+AGG + contig645end:10461-10480 MsG0080049066.01.T01:intron 25.0%
!! GGAAAACTAAGATAAGTTTT+TGG - contig645end:10708-10727 None:intergenic 25.0%
!! TATTTGTAAACCTCTGATTT+TGG + contig645end:11790-11809 MsG0080049066.01.T01:intron 25.0%
!! TCAAATAATGTCTAAAATGG+AGG - contig645end:10775-10794 None:intergenic 25.0%
!! TCTCTTTTATTCTATGTTAC+AGG + contig645end:10286-10305 MsG0080049066.01.T01:intron 25.0%
!!! ATTTCCCAGTATTTTTGATA+TGG + contig645end:11304-11323 MsG0080049066.01.T01:intron 25.0%
!!! TCTTTTATTTTTCCTTCCAT+GGG - contig645end:12469-12488 None:intergenic 25.0%
!!! TTGCATTTTGACATTAGTTT+GGG + contig645end:11260-11279 MsG0080049066.01.T01:intron 25.0%
!!! TTTTGCCTTCATTGATTTAA+CGG - contig645end:12961-12980 None:intergenic 25.0%
!!! TTTTTGTTATGATCACAAGT+AGG + contig645end:11350-11369 MsG0080049066.01.T01:intron 25.0%
AAAAAGACATGCATGATCAT+AGG + contig645end:11009-11028 MsG0080049066.01.T01:intron 30.0%
AAAAAGAGAAAGAGGAGATA+CGG - contig645end:10201-10220 None:intergenic 30.0%
AAACAAATTGGATTCCAAAC+AGG - contig645end:10456-10475 None:intergenic 30.0%
AAAGTATGTCTACGCTATAT+AGG + contig645end:10812-10831 MsG0080049066.01.T01:intron 30.0%
AACAAATTGGATTCCAAACA+GGG - contig645end:10455-10474 None:intergenic 30.0%
AATATTCGAGCAGTAAGTAA+AGG + contig645end:12198-12217 MsG0080049066.01.T01:intron 30.0%
AGAAACAGAATTCTTCAGTT+GGG - contig645end:12875-12894 None:intergenic 30.0%
ATCAGAGGTTTACAAATATC+TGG - contig645end:11788-11807 None:intergenic 30.0%
ATCTATTGTTCTATGCTGTT+TGG - contig645end:12543-12562 None:intergenic 30.0%
CAAAAAAATGAATTCCCTGT+TGG + contig645end:12306-12325 MsG0080049066.01.T01:intron 30.0%
CAAATCACAAATCCAAAACA+AGG - contig645end:10410-10429 None:intergenic 30.0%
CCACTAATTAACTTTCATAC+AGG - contig645end:12676-12695 None:intergenic 30.0%
CCTGTATGAAAGTTAATTAG+TGG + contig645end:12673-12692 MsG0080049066.01.T01:intron 30.0%
CCTTATTATGTACAGGAAAA+AGG - contig645end:13043-13062 None:intergenic 30.0%
CTAAAGATATGATACAACGT+AGG - contig645end:11504-11523 None:intergenic 30.0%
CTTAAGTAAGTCAATCCAAA+TGG + contig645end:10643-10662 MsG0080049066.01.T01:intron 30.0%
GGATAAAGTGCAAACATATT+AGG + contig645end:10909-10928 MsG0080049066.01.T01:intron 30.0%
TAATAACATGACAGAGAACA+AGG - contig645end:10938-10957 None:intergenic 30.0%
TCAGAATTATCATTCTTTGG+AGG - contig645end:11622-11641 None:intergenic 30.0%
TCCAAATCCTTATTATGTAC+AGG - contig645end:13050-13069 None:intergenic 30.0%
TCCTGTACATAATAAGGATT+TGG + contig645end:13046-13065 MsG0080049066.01.T01:intron 30.0%
TTCAATGTGCATAACAAAGA+AGG - contig645end:10264-10283 None:intergenic 30.0%
! CCTTTTTCCTGTACATAATA+AGG + contig645end:13040-13059 MsG0080049066.01.T01:intron 30.0%
! GATTCTAATTGCTTTAAACC+AGG - contig645end:13600-13619 None:intergenic 30.0%
! GCTATTATTATTAGCTCTTC+CGG + contig645end:10581-10600 MsG0080049066.01.T01:intron 30.0%
! TCTATTGTTCTATGCTGTTT+GGG - contig645end:12542-12561 None:intergenic 30.0%
! TTTGAAACGAATCATTGTGA+TGG + contig645end:13205-13224 MsG0080049066.01.T01:intron 30.0%
!! AATTAAACTTTAGGGCCATT+TGG - contig645end:10661-10680 None:intergenic 30.0%
!! GTTGCATTTTGACATTAGTT+TGG + contig645end:11259-11278 MsG0080049066.01.T01:intron 30.0%
!! TAAGAGTATTGTGTGGATAA+TGG + contig645end:10006-10025 MsG0080049066.01.T01:exon 30.0%
!! TTTCTGAAATCTGCATGATA+TGG - contig645end:12516-12535 None:intergenic 30.0%
!! TTTTTCATACACCCTTGTTT+TGG + contig645end:10395-10414 MsG0080049066.01.T01:intron 30.0%
!!! CTCTTTTATTTTTCCTTCCA+TGG - contig645end:12470-12489 None:intergenic 30.0%
AAGAGGAACTCAGAAGTTAA+AGG - contig645end:12227-12246 None:intergenic 35.0%
AAGGAGATGAAATGTTAGCT+AGG + contig645end:13229-13248 MsG0080049066.01.T01:intron 35.0%
AATGAAGTCTCAGATTGCTT+TGG - contig645end:12364-12383 None:intergenic 35.0%
AGGAGATGAAATGTTAGCTA+GGG + contig645end:13230-13249 MsG0080049066.01.T01:intron 35.0%
ATACGTAACACCAAAATCAG+AGG - contig645end:11803-11822 None:intergenic 35.0%
ATGATCATAGGATATTGGTG+GGG + contig645end:11021-11040 MsG0080049066.01.T01:intron 35.0%
ATTATGTACAGGAAAAAGGG+AGG - contig645end:13039-13058 None:intergenic 35.0%
CAGAAACAGAATTCTTCAGT+TGG - contig645end:12876-12895 None:intergenic 35.0%
CATGATCATAGGATATTGGT+GGG + contig645end:11020-11039 MsG0080049066.01.T01:intron 35.0%
CATGCATGATCATAGGATAT+TGG + contig645end:11016-11035 MsG0080049066.01.T01:intron 35.0%
CTGCATGATATGGAAGAAAT+TGG - contig645end:12506-12525 None:intergenic 35.0%
CTTAAGTTTATCTACTTGCC+CGG - contig645end:10629-10648 None:intergenic 35.0%
GATTAAGAGAGATTCTGCAA+AGG - contig645end:13074-13093 None:intergenic 35.0%
GATTCCAAACAGGGAATAAT+GGG - contig645end:10446-10465 None:intergenic 35.0%
GCCCTAATTGAAATAAGTCT+TGG - contig645end:11225-11244 None:intergenic 35.0%
GCTGTGTGTAAACTGTAAAT+TGG - contig645end:13442-13461 None:intergenic 35.0%
GTACATGATTCGTTTGATGA+TGG + contig645end:11046-11065 MsG0080049066.01.T01:intron 35.0%
GTACTTGCCCATTAAGAATT+GGG + contig645end:10747-10766 MsG0080049066.01.T01:intron 35.0%
GTTAGGAAAGAGAATGAAGT+GGG - contig645end:10179-10198 None:intergenic 35.0%
TCTCTTAATCTTACAGCCTT+TGG + contig645end:13084-13103 MsG0080049066.01.T01:intron 35.0%
TGCATTCGTTTATCAGAATG+AGG - contig645end:11940-11959 None:intergenic 35.0%
! AACGAATCATTGTGATGGAA+AGG + contig645end:13210-13229 MsG0080049066.01.T01:intron 35.0%
! AAGGAGTATGTACTTCGATT+CGG - contig645end:10962-10981 None:intergenic 35.0%
! ACGCGTTTTTCTTCTTTCAT+TGG + contig645end:11905-11924 MsG0080049066.01.T01:intron 35.0%
! CATTGCATTGTTGTTCAAGT+CGG + contig645end:10083-10102 MsG0080049066.01.T01:CDS 35.0%
! GGTTATAGCTGATTCATACT+TGG + contig645end:13542-13561 MsG0080049066.01.T01:exon 35.0%
! TTGGACTGACTCAATCAAAA+GGG - contig645end:12345-12364 None:intergenic 35.0%
! TTTGGACTGACTCAATCAAA+AGG - contig645end:12346-12365 None:intergenic 35.0%
!! ACAATGTTGATGATTGTCTG+AGG + contig645end:12760-12779 MsG0080049066.01.T01:CDS 35.0%
!! CTGAAGAATTCTGTTTCTGA+AGG + contig645end:12877-12896 MsG0080049066.01.T01:intron 35.0%
!! GAAGAGATAAGAGTATTGTG+TGG + contig645end:9999-10018 MsG0080049066.01.T01:exon 35.0%
!! GTGGTTCACAAACTTTTTCT+AGG + contig645end:12692-12711 MsG0080049066.01.T01:intron 35.0%
ACAGTTCCAGATCAAGGATT+TGG + contig645end:11716-11735 MsG0080049066.01.T01:CDS 40.0%
AGACGTGTTAAGTAAGGGAA+AGG + contig645end:13521-13540 MsG0080049066.01.T01:exon 40.0%
AGTTCCCATTATTCCCTGTT+TGG + contig645end:10439-10458 MsG0080049066.01.T01:intron 40.0%
ATCTAGCATGACAGAGAAAG+CGG - contig645end:11763-11782 None:intergenic 40.0%
ATCTCAGTGTTCTCATCATC+CGG - contig645end:11141-11160 None:intergenic 40.0%
CAGTTCCAGATCAAGGATTT+GGG + contig645end:11717-11736 MsG0080049066.01.T01:CDS 40.0%
CATGTTCACTCTTCACAACT+AGG + contig645end:12004-12023 MsG0080049066.01.T01:intron 40.0%
CATTACCCAAATCCTTGATC+TGG - contig645end:11725-11744 None:intergenic 40.0%
CGACTTGAACAACAATGCAA+TGG - contig645end:10085-10104 None:intergenic 40.0%
CTAGTTGTGAAGAGTGAACA+TGG - contig645end:12006-12025 None:intergenic 40.0%
GCATGATCATAGGATATTGG+TGG + contig645end:11019-11038 MsG0080049066.01.T01:intron 40.0%
GGATTCCAAACAGGGAATAA+TGG - contig645end:10447-10466 None:intergenic 40.0%
GGTACTTGCCCATTAAGAAT+TGG + contig645end:10746-10765 MsG0080049066.01.T01:intron 40.0%
GGTTAGGAAAGAGAATGAAG+TGG - contig645end:10180-10199 None:intergenic 40.0%
TAAGAGATGCGAGAGTAAAG+AGG - contig645end:12244-12263 None:intergenic 40.0%
TAGAAAAAAGCTAGAGCCTC+TGG + contig645end:11665-11684 MsG0080049066.01.T01:intron 40.0%
TCTCGCATCTCTTATACCTT+TGG + contig645end:12250-12269 MsG0080049066.01.T01:intron 40.0%
TGCCTCCGTTAAATCAATGA+AGG + contig645end:12953-12972 MsG0080049066.01.T01:CDS 40.0%
TGGTTTCAGCCTCTTACAAA+CGG + contig645end:13491-13510 MsG0080049066.01.T01:intron 40.0%
TTCACAACTAGGATTGCTCT+AGG + contig645end:12015-12034 MsG0080049066.01.T01:intron 40.0%
! ACTGACTCAATCAAAAGGGA+GGG - contig645end:12341-12360 None:intergenic 40.0%
! GAATGAATAGAGTGCTCCTT+TGG + contig645end:13731-13750 MsG0080049066.01.T01:exon 40.0%
! TAGCTGATTCATACTTGGAC+CGG + contig645end:13547-13566 MsG0080049066.01.T01:exon 40.0%
!! ATTCTGTTTCTGAAGGTCAC+TGG + contig645end:12884-12903 MsG0080049066.01.T01:intron 40.0%
!! ATTGATTTAACGGAGGCATC+AGG - contig645end:12951-12970 None:intergenic 40.0%
!! CATGATTCGTTTGATGATGG+TGG + contig645end:11049-11068 MsG0080049066.01.T01:intron 40.0%
!! CTTATCTTAGTTTTCCCCAG+TGG + contig645end:10712-10731 MsG0080049066.01.T01:intron 40.0%
!! GGAGGTACCCAATTCTTAAT+GGG - contig645end:10757-10776 None:intergenic 40.0%
!! TACTGCTGAAGGAAGCATTA+TGG + contig645end:10312-10331 MsG0080049066.01.T01:CDS 40.0%
!! TGCCTTCATTGATTTAACGG+AGG - contig645end:12958-12977 None:intergenic 40.0%
!! TGGAGGTACCCAATTCTTAA+TGG - contig645end:10758-10777 None:intergenic 40.0%
!!! AGATTTTCAAGTCCCATGGA+AGG + contig645end:12454-12473 MsG0080049066.01.T01:intron 40.0%
!!! CTCAAGATTTTCAAGTCCCA+TGG + contig645end:12450-12469 MsG0080049066.01.T01:intron 40.0%
!!! TTTTGAGGTGCTAGCTTGAA+GGG + contig645end:10888-10907 MsG0080049066.01.T01:intron 40.0%
!!! TTTTTGAGGTGCTAGCTTGA+AGG + contig645end:10887-10906 MsG0080049066.01.T01:intron 40.0%
AACTGTGTGAGGATTACAGC+TGG - contig645end:11702-11721 None:intergenic 45.0%
ACCGTCAGACGTGTTAAGTA+AGG + contig645end:13515-13534 MsG0080049066.01.T01:exon 45.0%
AGACGTGGAAACAGAGAACT+TGG + contig645end:13572-13591 MsG0080049066.01.T01:exon 45.0%
AGATCGGCAGAGGGAAAATT+GGG - contig645end:12142-12161 None:intergenic 45.0%
ATCACCTGTCCAGAGCAATA+AGG - contig645end:12995-13014 None:intergenic 45.0%
CCCTTACTTAACACGTCTGA+CGG - contig645end:13519-13538 None:intergenic 45.0%
CCGTCAGACGTGTTAAGTAA+GGG + contig645end:13516-13535 MsG0080049066.01.T01:exon 45.0%
CTAACAGTCTCTCCAGTAAC+CGG + contig645end:10607-10626 MsG0080049066.01.T01:intron 45.0%
CTGACTCAATCAAAAGGGAG+GGG - contig645end:12340-12359 None:intergenic 45.0%
GAAAGCGGTTCACGAAAAAC+TGG - contig645end:11748-11767 None:intergenic 45.0%
GAGAAAGAGGAGATACGGTT+AGG - contig645end:10196-10215 None:intergenic 45.0%
TAAACGGGACCTTAGCTAGT+CGG - contig645end:13110-13129 None:intergenic 45.0%
TAACAGTCTCTCCAGTAACC+GGG + contig645end:10608-10627 MsG0080049066.01.T01:intron 45.0%
TACCATTAAGCACCACCACT+GGG - contig645end:10730-10749 None:intergenic 45.0%
TATGCTTCTGACAGTGGCAA+TGG + contig645end:12723-12742 MsG0080049066.01.T01:CDS 45.0%
TCACCTGTCCAGAGCAATAA+GGG - contig645end:12994-13013 None:intergenic 45.0%
TGACTCAATCAAAAGGGAGG+GGG - contig645end:12339-12358 None:intergenic 45.0%
TTATCTACTTGCCCGGTTAC+TGG - contig645end:10622-10641 None:intergenic 45.0%
TTTACACGAAGAGATGCTGC+AGG - contig645end:12180-12199 None:intergenic 45.0%
! AGCTGATTCATACTTGGACC+GGG + contig645end:13548-13567 MsG0080049066.01.T01:exon 45.0%
! GACTGACTCAATCAAAAGGG+AGG - contig645end:12342-12361 None:intergenic 45.0%
! GCATTGTTGTTCAAGTCGGA+AGG + contig645end:10087-10106 MsG0080049066.01.T01:CDS 45.0%
!! ATCTTAGTTTTCCCCAGTGG+TGG + contig645end:10715-10734 MsG0080049066.01.T01:intron 45.0%
ACCATTAAGCACCACCACTG+GGG - contig645end:10729-10748 None:intergenic 50.0%
AGTGTGAACTGTCGCCATCA+TGG + contig645end:10113-10132 MsG0080049066.01.T01:CDS 50.0%
CACGCAGAAGCAAGGAATCA+AGG - contig645end:12914-12933 None:intergenic 50.0%
CAGTTCTGCCCTTATTGCTC+TGG + contig645end:12983-13002 MsG0080049066.01.T01:CDS 50.0%
CCTCACACAGTTCCAGATCA+AGG + contig645end:11710-11729 MsG0080049066.01.T01:CDS 50.0%
CGGTTACTGGAGAGACTGTT+AGG - contig645end:10609-10628 None:intergenic 50.0%
CTGACGGTACCGTTTGTAAG+AGG - contig645end:13503-13522 None:intergenic 50.0%
CTGGAGAGACTGTTAGGAAC+CGG - contig645end:10603-10622 None:intergenic 50.0%
GAAACAGAGAACTTGGACCC+TGG + contig645end:13579-13598 MsG0080049066.01.T01:exon 50.0%
GAGATCGGCAGAGGGAAAAT+TGG - contig645end:12143-12162 None:intergenic 50.0%
GAGGGGGAAAACTTCCAACA+GGG - contig645end:12323-12342 None:intergenic 50.0%
GATCGGCAGAGGGAAAATTG+GGG - contig645end:12141-12160 None:intergenic 50.0%
GCGCAATATGCTTCTGACAG+TGG + contig645end:12717-12736 MsG0080049066.01.T01:CDS 50.0%
GTACCATTAAGCACCACCAC+TGG - contig645end:10731-10750 None:intergenic 50.0%
GTGGGAGAGAACAAGAGAGA+TGG - contig645end:10161-10180 None:intergenic 50.0%
TCTCTGTTTCCACGTCTTCC+CGG - contig645end:13569-13588 None:intergenic 50.0%
TCTTGAAGCACGCAGAAGCA+AGG - contig645end:12922-12941 None:intergenic 50.0%
TGAACTGTCGCCATCATGGA+AGG + contig645end:10117-10136 MsG0080049066.01.T01:CDS 50.0%
! CCTTGATCTGGAACTGTGTG+AGG - contig645end:11713-11732 None:intergenic 50.0%
! CTGTACTTGCTAACATGCGC+GGG - contig645end:10058-10077 None:intergenic 50.0%
! GCTGTACTTGCTAACATGCG+CGG - contig645end:10059-10078 None:intergenic 50.0%
!! CTGTTTCTGAAGGTCACTGG+AGG + contig645end:12887-12906 MsG0080049066.01.T01:intron 50.0%
!! GTTACAGGTGCTACTGCTGA+AGG + contig645end:10301-10320 MsG0080049066.01.T01:intron 50.0%
AGCGAAGTAGAGATCGGCAG+AGG - contig645end:12152-12171 None:intergenic 55.0%
ATACTTGGACCGGGAAGACG+TGG + contig645end:13557-13576 MsG0080049066.01.T01:exon 55.0%
CTGTCGCCATCATGGAAGGA+AGG + contig645end:10121-10140 MsG0080049066.01.T01:CDS 55.0%
GACCTTAGCTAGTCGGCCAA+AGG - contig645end:13103-13122 None:intergenic 55.0%
GCCCAGAGCGAAGTAGAGAT+CGG - contig645end:12158-12177 None:intergenic 55.0%
GCCGATCTCTACTTCGCTCT+GGG + contig645end:12154-12173 MsG0080049066.01.T01:CDS 55.0%
GCGAAGTAGAGATCGGCAGA+GGG - contig645end:12151-12170 None:intergenic 55.0%
GCTGGTACGTAAGTCTCCAG+AGG - contig645end:11684-11703 None:intergenic 55.0%
GGAGGGGGAAAACTTCCAAC+AGG - contig645end:12324-12343 None:intergenic 55.0%
TGCCGATCTCTACTTCGCTC+TGG + contig645end:12153-12172 MsG0080049066.01.T01:CDS 55.0%
! AGCCTTTGGCCGACTAGCTA+AGG + contig645end:13098-13117 MsG0080049066.01.T01:intron 55.0%
! CTGCCCTTATTGCTCTGGAC+AGG + contig645end:12988-13007 MsG0080049066.01.T01:CDS 55.0%
! TCCCCAGTGGTGGTGCTTAA+TGG + contig645end:10725-10744 MsG0080049066.01.T01:intron 55.0%
ATGGAAGGAAGGCAGGCGCA+TGG + contig645end:10132-10151 MsG0080049066.01.T01:CDS 60.0%
CGCCATCATGGAAGGAAGGC+AGG + contig645end:10125-10144 MsG0080049066.01.T01:CDS 60.0%
CGCCTGCCTTCCTTCCATGA+TGG - contig645end:10130-10149 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
contig645end gene 9996 13751 9996 ID=MsG0080049066.01;
contig645end mRNA 9996 13751 9996 ID=MsG0080049066.01.T01;Parent=MsG0080049066.01
contig645end exon 9996 10199 9996 ID=MsG0080049066.01.T01.exon;Parent=MsG0080049066.01.T01
contig645end CDS 10025 10199 10025 ID=MsG0080049066.01.T01.cds;Parent=MsG0080049066.01.T01
contig645end CDS 10308 10350 10308 ID=MsG0080049066.01.T01.cds;Parent=MsG0080049066.01.T01
contig645end exon 10308 10350 10308 ID=MsG0080049066.01.T01.exon;Parent=MsG0080049066.01.T01
contig645end CDS 11668 11738 11668 ID=MsG0080049066.01.T01.cds;Parent=MsG0080049066.01.T01
contig645end exon 11668 11738 11668 ID=MsG0080049066.01.T01.exon;Parent=MsG0080049066.01.T01
contig645end CDS 12115 12209 12115 ID=MsG0080049066.01.T01.cds;Parent=MsG0080049066.01.T01
contig645end exon 12115 12209 12115 ID=MsG0080049066.01.T01.exon;Parent=MsG0080049066.01.T01
contig645end CDS 12714 12781 12714 ID=MsG0080049066.01.T01.cds;Parent=MsG0080049066.01.T01
contig645end exon 12714 12781 12714 ID=MsG0080049066.01.T01.exon;Parent=MsG0080049066.01.T01
contig645end CDS 12899 13009 12899 ID=MsG0080049066.01.T01.cds;Parent=MsG0080049066.01.T01
contig645end exon 12899 13009 12899 ID=MsG0080049066.01.T01.exon;Parent=MsG0080049066.01.T01
contig645end CDS 13500 13629 13500 ID=MsG0080049066.01.T01.cds;Parent=MsG0080049066.01.T01
contig645end exon 13500 13751 13500 ID=MsG0080049066.01.T01.exon;Parent=MsG0080049066.01.T01
Gene Sequence

>MsG0080049066.01.T01

ATGGCATCATCATCATCATCAGTTGTGAGTCCCGCGCATGTTAGCAAGTACAGCAAACCATTGCATTGTTGTTCAAGTCGGAAGGTGAAGTGTGAACTGTCGCCATCATGGAAGGAAGGCAGGCGCATGGTCTCCATCTCTCTTGTTCTCTCCCACTTCATTCTCTTTCCTAACCGTGCTACTGCTGAAGGAAGCATTATGGACAAATATGTTAAGAGAAAAAAGCTAGAGCCTCTGGAGACTTACGTACCAGCTGTAATCCTCACACAGTTCCAGATCAAGGATTTGGAAAAAACTTTAGAGGGTAATGAGCCCCAATTTTCCCTCTGCCGATCTCTACTTCGCTCTGGGCCTGCAGCATCTCTTCGTGTAAATATTCGAGCAGTCGCGCAATATGCTTCTGACAGTGGCAATGGTAAAACTGCATTGAACAATGTTGATGATTGTCTGAGGTCACTGGAGGACCTTGATTCCTTGCTTCTGCGTGCTTCAAGAAATGATCCTGATGCCTCCGTTAAATCAATGAAGGCAAAAGTCAGTTCTGCCCTTATTGCTCTGGACAGCCTCTTACAAACGGTACCGTCAGACGTGTTAAGTAAGGGAAAGGTTATAGCTGATTCATACTTGGACCGGGAAGACGTGGAAACAGAGAACTTGGACCCTGGTTTAAAGCAATTAGAATCAATACTGTGA

Protein sequence

>MsG0080049066.01.T01

MASSSSSVVSPAHVSKYSKPLHCCSSRKVKCELSPSWKEGRRMVSISLVLSHFILFPNRATAEGSIMDKYVKRKKLEPLETYVPAVILTQFQIKDLEKTLEGNEPQFSLCRSLLRSGPAASLRVNIRAVAQYASDSGNGKTALNNVDDCLRSLEDLDSLLLRASRNDPDASVKSMKAKVSSALIALDSLLQTVPSDVLSKGKVIADSYLDREDVETENLDPGLKQLESIL*