Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024171.01.T01 | XP_039690722.1 | 84.341 | 364 | 57 | 0 | 7 | 370 | 2 | 365 | 0 | 644 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024171.01.T01 | B9FSC8 | 69.274 | 358 | 110 | 0 | 12 | 369 | 6 | 363 | 0 | 555 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024171.01.T01 | G7K3R7 | 84.341 | 364 | 57 | 0 | 7 | 370 | 2 | 365 | 0.0 | 644 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024171.01.T01 | MTR_5g006740 | 84.341 | 364 | 57 | 0 | 7 | 370 | 2 | 365 | 0.0 | 644 |
| MsG0580024171.01.T01 | MTR_5g006800 | 81.030 | 369 | 68 | 1 | 4 | 370 | 1 | 369 | 0.0 | 634 |
| MsG0580024171.01.T01 | MTR_5g006780 | 80.323 | 371 | 69 | 2 | 4 | 370 | 1 | 371 | 0.0 | 626 |
| MsG0580024171.01.T01 | MTR_5g006720 | 82.940 | 381 | 25 | 3 | 1 | 370 | 1 | 352 | 0.0 | 626 |
| MsG0580024171.01.T01 | MTR_5g006750 | 77.089 | 371 | 81 | 2 | 4 | 370 | 1 | 371 | 0.0 | 614 |
| MsG0580024171.01.T01 | MTR_5g006670 | 79.558 | 362 | 68 | 1 | 9 | 370 | 4 | 359 | 0.0 | 605 |
| MsG0580024171.01.T01 | MTR_5g008040 | 78.393 | 361 | 78 | 0 | 9 | 369 | 10 | 370 | 0.0 | 603 |
| MsG0580024171.01.T01 | MTR_5g006710 | 78.611 | 360 | 71 | 1 | 11 | 370 | 10 | 363 | 0.0 | 597 |
| MsG0580024171.01.T01 | MTR_5g006740 | 79.945 | 364 | 56 | 1 | 7 | 370 | 2 | 348 | 0.0 | 595 |
| MsG0580024171.01.T01 | MTR_3g115600 | 64.850 | 367 | 125 | 1 | 4 | 370 | 1 | 363 | 0.0 | 511 |
| MsG0580024171.01.T01 | MTR_4g125470 | 53.784 | 370 | 158 | 3 | 13 | 369 | 19 | 388 | 1.86e-140 | 405 |
| MsG0580024171.01.T01 | MTR_5g006730 | 82.727 | 110 | 19 | 0 | 9 | 118 | 8 | 117 | 1.12e-61 | 194 |
| MsG0580024171.01.T01 | MTR_3g096570 | 74.324 | 74 | 16 | 1 | 176 | 249 | 8 | 78 | 7.11e-29 | 113 |
| MsG0580024171.01.T01 | MTR_3g096562 | 69.231 | 78 | 21 | 1 | 172 | 249 | 168 | 242 | 2.15e-27 | 112 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024171.01.T01 | AT1G76680 | 70.000 | 360 | 108 | 0 | 11 | 370 | 10 | 369 | 0.0 | 552 |
| MsG0580024171.01.T01 | AT1G76690 | 68.194 | 371 | 117 | 1 | 1 | 370 | 1 | 371 | 0.0 | 551 |
| MsG0580024171.01.T01 | AT1G76680 | 64.948 | 388 | 111 | 1 | 8 | 370 | 7 | 394 | 0.0 | 538 |
| MsG0580024171.01.T01 | AT1G09400 | 65.152 | 330 | 109 | 1 | 19 | 348 | 1 | 324 | 1.59e-167 | 471 |
| MsG0580024171.01.T01 | AT1G09400 | 64.815 | 270 | 89 | 1 | 79 | 348 | 2 | 265 | 7.31e-135 | 385 |
| MsG0580024171.01.T01 | AT2G06050 | 50.398 | 377 | 164 | 5 | 13 | 369 | 12 | 385 | 2.59e-133 | 387 |
| MsG0580024171.01.T01 | AT2G06050 | 50.398 | 377 | 164 | 5 | 13 | 369 | 12 | 385 | 2.59e-133 | 387 |
| MsG0580024171.01.T01 | AT2G06050 | 50.398 | 377 | 164 | 5 | 13 | 369 | 12 | 385 | 2.59e-133 | 387 |
| MsG0580024171.01.T01 | AT1G17990 | 67.176 | 262 | 77 | 3 | 8 | 267 | 4 | 258 | 4.78e-130 | 374 |
| MsG0580024171.01.T01 | AT1G18020 | 67.176 | 262 | 77 | 3 | 8 | 267 | 4 | 258 | 4.78e-130 | 374 |
| MsG0580024171.01.T01 | AT1G17990 | 64.122 | 262 | 77 | 4 | 8 | 267 | 4 | 250 | 1.91e-121 | 352 |
Find 106 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATCAATACTTTCCTTTA+TGG | 0.047551 | 5:-1535358 | None:intergenic |
| CTACATTCTTCTGTCAAATT+TGG | 0.146007 | 5:+1534432 | MsG0580024171.01.T01:CDS |
| TCTCCATATTATACCTGTTT+AGG | 0.193368 | 5:-1535569 | None:intergenic |
| GCAAATCTCTTTGGCAAATC+TGG | 0.201994 | 5:-1535534 | None:intergenic |
| TCAATGCTATAGCTGAAAAT+AGG | 0.224729 | 5:+1535472 | MsG0580024171.01.T01:CDS |
| GTTGGAAGGGTTTCTAATTC+TGG | 0.234366 | 5:+1534458 | MsG0580024171.01.T01:CDS |
| AACTAATCACATGGAAATTA+TGG | 0.239533 | 5:+1533885 | MsG0580024171.01.T01:exon |
| TGCACTTCTGATCCAGTTCT+TGG | 0.240931 | 5:+1535597 | MsG0580024171.01.T01:CDS |
| GACTCAAATCCGAAGGTATT+GGG | 0.272408 | 5:+1535276 | MsG0580024171.01.T01:CDS |
| CTCCATATTATACCTGTTTA+GGG | 0.280647 | 5:-1535568 | None:intergenic |
| GAACCGTTGTAGATTTGTTT+TGG | 0.287772 | 5:+1535167 | MsG0580024171.01.T01:CDS |
| CTAAAGTCATTGACAATATT+AGG | 0.289168 | 5:-1534803 | None:intergenic |
| CATTCTTCGAAATCTGAAAA+AGG | 0.307639 | 5:-1535249 | None:intergenic |
| GTTAATGCCCTCAATAAATA+TGG | 0.323996 | 5:+1535309 | MsG0580024171.01.T01:CDS |
| GGCTTTCAATGGCACTTTCA+TGG | 0.337518 | 5:+1535419 | MsG0580024171.01.T01:CDS |
| TAATTGAATGTTTGAATTGA+TGG | 0.348012 | 5:+1535707 | MsG0580024171.01.T01:three_prime_UTR |
| TTTGATGGGGTTGAAATTCA+TGG | 0.358736 | 5:+1535066 | MsG0580024171.01.T01:CDS |
| GATATCGGTGCTTGTCCATT+TGG | 0.366252 | 5:-1534686 | None:intergenic |
| CACTTAATGCTCCCCTAAAC+AGG | 0.366939 | 5:+1535556 | MsG0580024171.01.T01:CDS |
| TCCCCTAAACAGGTATAATA+TGG | 0.374123 | 5:+1535566 | MsG0580024171.01.T01:CDS |
| GCATTAAGTGCAAATCTCTT+TGG | 0.379309 | 5:-1535543 | None:intergenic |
| TTGAATTTGCCCATCTTGTA+AGG | 0.380236 | 5:-1533940 | None:intergenic |
| ACAGAAGAATGTAGCACCTT+TGG | 0.386994 | 5:-1534423 | None:intergenic |
| GTTGAAATTCATGGGGCTAC+TGG | 0.390224 | 5:+1535075 | MsG0580024171.01.T01:CDS |
| TATACATTTGAATATGAAGT+TGG | 0.394124 | 5:-1533823 | None:intergenic |
| CACCAAGTTGTGAAGACATT+CGG | 0.398140 | 5:-1535385 | None:intergenic |
| ATGTTTATTCATTCAAGAAA+AGG | 0.404316 | 5:-1535633 | None:intergenic |
| CCATTGAAAGCCTTTCTCAT+TGG | 0.410004 | 5:-1535408 | None:intergenic |
| AGACTCAAATCCGAAGGTAT+TGG | 0.418300 | 5:+1535275 | MsG0580024171.01.T01:CDS |
| AATGACAGAACAGATGAATA+TGG | 0.423632 | 5:+1535132 | MsG0580024171.01.T01:CDS |
| CAACTTGGTGCCAATGAGAA+AGG | 0.428595 | 5:+1535398 | MsG0580024171.01.T01:CDS |
| TTCTGTCAAATTTGGCATGT+TGG | 0.430125 | 5:+1534440 | MsG0580024171.01.T01:CDS |
| CAATGCTATAGCTGAAAATA+GGG | 0.430483 | 5:+1535473 | MsG0580024171.01.T01:CDS |
| GTTGTTGTATGATCTTTGTC+TGG | 0.432389 | 5:-1534085 | None:intergenic |
| AGGCCCTTTGAGAATAATAT+AGG | 0.432885 | 5:-1534128 | None:intergenic |
| GTCAAATTTGGCATGTTGGA+AGG | 0.433314 | 5:+1534444 | MsG0580024171.01.T01:CDS |
| GCAAATTCAATCTATCTCAT+AGG | 0.435780 | 5:+1533953 | MsG0580024171.01.T01:CDS |
| ATCTTGTCTTTCATAGCCTC+TGG | 0.440241 | 5:-1535445 | None:intergenic |
| TTGATGGGGTTGAAATTCAT+GGG | 0.442458 | 5:+1535067 | MsG0580024171.01.T01:CDS |
| ATTCAAACACACCTGGCATA+TGG | 0.446612 | 5:+1534351 | MsG0580024171.01.T01:CDS |
| TAACCAGTTTATCAACCAAA+TGG | 0.449319 | 5:+1534671 | MsG0580024171.01.T01:intron |
| CAACATTTGTGCAATAAAGT+TGG | 0.452849 | 5:+1535684 | MsG0580024171.01.T01:three_prime_UTR |
| ATAGAATACCATATTTATTG+AGG | 0.453888 | 5:-1535317 | None:intergenic |
| TTCTCATATCTGAAGCTACC+GGG | 0.465468 | 5:+1534163 | MsG0580024171.01.T01:CDS |
| AACCGAATGTCTTCACAACT+TGG | 0.469083 | 5:+1535383 | MsG0580024171.01.T01:CDS |
| AGGGCAGATCTTATTGCTTA+CGG | 0.471109 | 5:+1535492 | MsG0580024171.01.T01:CDS |
| TAGTCGGTATAGCCAAGAAC+TGG | 0.478883 | 5:-1535609 | None:intergenic |
| AAGCAACTAAGACAACGAAT+TGG | 0.478951 | 5:+1534719 | MsG0580024171.01.T01:CDS |
| TCATATGGTAGAATCCATAA+AGG | 0.480967 | 5:+1535344 | MsG0580024171.01.T01:CDS |
| TGGTATTCTATATTGTCATA+TGG | 0.482929 | 5:+1535329 | MsG0580024171.01.T01:CDS |
| ACTTCTTACTCCTTACAAGA+TGG | 0.486533 | 5:+1533930 | MsG0580024171.01.T01:CDS |
| GAAGCTGTTGTAAATGAGAT+AGG | 0.491988 | 5:+1535198 | MsG0580024171.01.T01:CDS |
| CTGTCCTATATTATTCTCAA+AGG | 0.493412 | 5:+1534124 | MsG0580024171.01.T01:CDS |
| GAAGGTATTGGGGCTTTACA+TGG | 0.495448 | 5:+1535287 | MsG0580024171.01.T01:CDS |
| TGTTTATTCATTCAAGAAAA+GGG | 0.498900 | 5:-1535632 | None:intergenic |
| TAGAATACCATATTTATTGA+GGG | 0.499116 | 5:-1535316 | None:intergenic |
| TCAAATTTGGCATGTTGGAA+GGG | 0.505329 | 5:+1534445 | MsG0580024171.01.T01:CDS |
| TAAGGAGTAAGAAGTGGAAT+GGG | 0.514396 | 5:-1533922 | None:intergenic |
| TGCTTGTCTGTAGAAGATAT+CGG | 0.515089 | 5:-1534701 | None:intergenic |
| TGTTGTACTTGTAGCATGTA+AGG | 0.521494 | 5:+1535657 | MsG0580024171.01.T01:three_prime_UTR |
| TCTTCTGTTCTTAGCCTCCT+CGG | 0.524286 | 5:-1534776 | None:intergenic |
| TGTCCTATATTATTCTCAAA+GGG | 0.524479 | 5:+1534125 | MsG0580024171.01.T01:CDS |
| CTTCTCATATCTGAAGCTAC+CGG | 0.526618 | 5:+1534162 | MsG0580024171.01.T01:CDS |
| GTAAGGAGTAAGAAGTGGAA+TGG | 0.528759 | 5:-1533923 | None:intergenic |
| ATGTAAAGCCCCAATACCTT+CGG | 0.529971 | 5:-1535285 | None:intergenic |
| CTTTCATGAATTGCTCAAGT+AGG | 0.535013 | 5:-1535101 | None:intergenic |
| ACATTTGAATATGAAGTTGG+AGG | 0.538744 | 5:-1533820 | None:intergenic |
| TTGAATGTTTGAATTGATGG+TGG | 0.539048 | 5:+1535710 | MsG0580024171.01.T01:three_prime_UTR |
| CTTCTTACTCCTTACAAGAT+GGG | 0.539764 | 5:+1533931 | MsG0580024171.01.T01:CDS |
| ATTGTCAATGACTTTAGACT+TGG | 0.553093 | 5:+1534809 | MsG0580024171.01.T01:CDS |
| CAACTAAGACAACGAATTGG+AGG | 0.554386 | 5:+1534722 | MsG0580024171.01.T01:CDS |
| AGAGGCTATGAAAGACAAGA+TGG | 0.556607 | 5:+1535447 | MsG0580024171.01.T01:CDS |
| AATCACATGGAAATTATGGC+TGG | 0.556624 | 5:+1533889 | MsG0580024171.01.T01:exon |
| TATAGGACAGCATGCTGTTG+AGG | 0.564762 | 5:-1534111 | None:intergenic |
| GCATGAACAGCATCCACGAT+AGG | 0.566839 | 5:-1534401 | None:intergenic |
| CCAATGAGAAAGGCTTTCAA+TGG | 0.567256 | 5:+1535408 | MsG0580024171.01.T01:CDS |
| TATGAGAAGACCACCTTCAG+AGG | 0.570698 | 5:-1534148 | None:intergenic |
| GCAAGAAATGCTATTGAAGC+TGG | 0.573417 | 5:+1534833 | MsG0580024171.01.T01:CDS |
| TATGATCTTTGTCTGGTCAA+CGG | 0.586166 | 5:-1534078 | None:intergenic |
| TCTCAAAGGGCCTCTGAAGG+TGG | 0.587655 | 5:+1534138 | MsG0580024171.01.T01:CDS |
| CGAAGGTATTCAAACACACC+TGG | 0.587734 | 5:+1534344 | MsG0580024171.01.T01:intron |
| ACTGATACTGATATATAATG+AGG | 0.593303 | 5:-1533850 | None:intergenic |
| AGACAACGAATTGGAGGCGA+TGG | 0.601167 | 5:+1534728 | MsG0580024171.01.T01:CDS |
| ATCTTGTAAGGAGTAAGAAG+TGG | 0.605352 | 5:-1533928 | None:intergenic |
| GGGGTCTCTGAAACTGCTCA+AGG | 0.606667 | 5:+1534183 | MsG0580024171.01.T01:CDS |
| ACTCAAATCCGAAGGTATTG+GGG | 0.606871 | 5:+1535277 | MsG0580024171.01.T01:CDS |
| TAATTGATTAACTAATCACA+TGG | 0.607311 | 5:+1533876 | MsG0580024171.01.T01:exon |
| CAAAAGAGCAAGTCGTAGCG+TGG | 0.607477 | 5:+1534375 | MsG0580024171.01.T01:CDS |
| TCATTCAAGAAAAGGGTAGT+CGG | 0.610845 | 5:-1535625 | None:intergenic |
| TATTCTCAAAGGGCCTCTGA+AGG | 0.617874 | 5:+1534135 | MsG0580024171.01.T01:CDS |
| TTGAGCAGTTTCAGAGACCC+CGG | 0.624367 | 5:-1534181 | None:intergenic |
| TGATGGGGTTGAAATTCATG+GGG | 0.626342 | 5:+1535068 | MsG0580024171.01.T01:CDS |
| GGCACTTTCATGGTTACCAG+AGG | 0.627905 | 5:+1535429 | MsG0580024171.01.T01:CDS |
| ATGTGGAGACTCAAATCCGA+AGG | 0.628353 | 5:+1535269 | MsG0580024171.01.T01:CDS |
| GGGTCTCTGAAACTGCTCAA+GGG | 0.629621 | 5:+1534184 | MsG0580024171.01.T01:CDS |
| GTGGATGCTGTTCATGCCAA+AGG | 0.634883 | 5:+1534407 | MsG0580024171.01.T01:CDS |
| TTTCCAAAACAAATCTACAA+CGG | 0.645393 | 5:-1535170 | None:intergenic |
| TCTCATATCTGAAGCTACCG+GGG | 0.649902 | 5:+1534164 | MsG0580024171.01.T01:CDS |
| GAGGCTATGAAAGACAAGAT+GGG | 0.651463 | 5:+1535448 | MsG0580024171.01.T01:CDS |
| TCCATATTATACCTGTTTAG+GGG | 0.652104 | 5:-1535567 | None:intergenic |
| CACAATTCACACAACCGAGG+AGG | 0.668803 | 5:+1534762 | MsG0580024171.01.T01:CDS |
| CGTAGCGTGGAAACCTATCG+TGG | 0.669633 | 5:+1534388 | MsG0580024171.01.T01:CDS |
| GTACTTGTAGCATGTAAGGA+TGG | 0.672872 | 5:+1535661 | MsG0580024171.01.T01:three_prime_UTR |
| GACAGAACAGATGAATATGG+CGG | 0.676710 | 5:+1535135 | MsG0580024171.01.T01:CDS |
| TGTTGTAAATGAGATAGGTG+CGG | 0.689933 | 5:+1535203 | MsG0580024171.01.T01:CDS |
| TATCACAATTCACACAACCG+AGG | 0.720210 | 5:+1534759 | MsG0580024171.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAGTAATTCTAAATTCTAA+TGG | + | Chr5:1534260-1534279 | MsG0580024171.01.T01:intron | 15.0% |
| !!! | GAATATTTCAAACAATTTTA+TGG | - | Chr5:1534020-1534039 | None:intergenic | 15.0% |
| !!! | GATTTTTCAGTATTATTTTT+AGG | + | Chr5:1534517-1534536 | MsG0580024171.01.T01:intron | 15.0% |
| !!! | TTTTATTATATATTATGCGA+AGG | + | Chr5:1534327-1534346 | MsG0580024171.01.T01:intron | 15.0% |
| !! | ATAGAATACCATATTTATTG+AGG | - | Chr5:1535320-1535339 | None:intergenic | 20.0% |
| !! | ATGTTTATTCATTCAAGAAA+AGG | - | Chr5:1535636-1535655 | None:intergenic | 20.0% |
| !! | GTTAAAGATAGTTATGAAAT+TGG | - | Chr5:1534230-1534249 | None:intergenic | 20.0% |
| !! | TAATTGAATGTTTGAATTGA+TGG | + | Chr5:1535707-1535726 | MsG0580024171.01.T01:three_prime_UTR | 20.0% |
| !! | TAATTGATTAACTAATCACA+TGG | + | Chr5:1533876-1533895 | MsG0580024171.01.T01:exon | 20.0% |
| !! | TAGAATACCATATTTATTGA+GGG | - | Chr5:1535319-1535338 | None:intergenic | 20.0% |
| !! | TATACATTTGAATATGAAGT+TGG | - | Chr5:1533826-1533845 | None:intergenic | 20.0% |
| !! | TGTTTATTCATTCAAGAAAA+GGG | - | Chr5:1535635-1535654 | None:intergenic | 20.0% |
| !!! | AACTCTAAAATCAAATCAAT+AGG | - | Chr5:1534049-1534068 | None:intergenic | 20.0% |
| !!! | ACTCTAAAATCAAATCAATA+GGG | - | Chr5:1534048-1534067 | None:intergenic | 20.0% |
| !!! | ATTGAAGCATTTTGAATTTT+CGG | - | Chr5:1534886-1534905 | None:intergenic | 20.0% |
| !!! | ATTTGATTTTAGAGTTGTTT+TGG | + | Chr5:1534053-1534072 | MsG0580024171.01.T01:intron | 20.0% |
| !!! | TTATTTTGACTTCTTATAAC+AGG | + | Chr5:1535004-1535023 | MsG0580024171.01.T01:intron | 20.0% |
| !!! | TTTCAGTATTATTTTTAGGT+GGG | + | Chr5:1534521-1534540 | MsG0580024171.01.T01:intron | 20.0% |
| !!! | TTTTCAGTATTATTTTTAGG+TGG | + | Chr5:1534520-1534539 | MsG0580024171.01.T01:intron | 20.0% |
| ! | AAAATGCTTCAATATAAGAG+AGG | + | Chr5:1534893-1534912 | MsG0580024171.01.T01:intron | 25.0% |
| ! | AACTAATCACATGGAAATTA+TGG | + | Chr5:1533885-1533904 | MsG0580024171.01.T01:exon | 25.0% |
| ! | ACTGATACTGATATATAATG+AGG | - | Chr5:1533853-1533872 | None:intergenic | 25.0% |
| ! | CTAAAGTCATTGACAATATT+AGG | - | Chr5:1534806-1534825 | None:intergenic | 25.0% |
| ! | TGGTATTCTATATTGTCATA+TGG | + | Chr5:1535329-1535348 | MsG0580024171.01.T01:CDS | 25.0% |
| ! | TGTCCTATATTATTCTCAAA+GGG | + | Chr5:1534125-1534144 | MsG0580024171.01.T01:CDS | 25.0% |
| ! | TTCATCAATACTTTCCTTTA+TGG | - | Chr5:1535361-1535380 | None:intergenic | 25.0% |
| ! | TTTCCAAAACAAATCTACAA+CGG | - | Chr5:1535173-1535192 | None:intergenic | 25.0% |
| !! | AACATTTTGTGTACTAATTG+TGG | + | Chr5:1535029-1535048 | MsG0580024171.01.T01:intron | 25.0% |
| !!! | TATTATTTTTAGGTGGGAAT+TGG | + | Chr5:1534527-1534546 | MsG0580024171.01.T01:intron | 25.0% |
| AACTGGTTAGAAGAATTGTA+TGG | - | Chr5:1534660-1534679 | None:intergenic | 30.0% | |
| AATGACAGAACAGATGAATA+TGG | + | Chr5:1535132-1535151 | MsG0580024171.01.T01:CDS | 30.0% | |
| AATGTGAAATTTAGAGACGT+CGG | - | Chr5:1534961-1534980 | None:intergenic | 30.0% | |
| ACATTTGAATATGAAGTTGG+AGG | - | Chr5:1533823-1533842 | None:intergenic | 30.0% | |
| ATTGTCAATGACTTTAGACT+TGG | + | Chr5:1534809-1534828 | MsG0580024171.01.T01:CDS | 30.0% | |
| CAACATTTGTGCAATAAAGT+TGG | + | Chr5:1535684-1535703 | MsG0580024171.01.T01:three_prime_UTR | 30.0% | |
| CAATGCTATAGCTGAAAATA+GGG | + | Chr5:1535473-1535492 | MsG0580024171.01.T01:CDS | 30.0% | |
| CATTCTTCGAAATCTGAAAA+AGG | - | Chr5:1535252-1535271 | None:intergenic | 30.0% | |
| CTACATTCTTCTGTCAAATT+TGG | + | Chr5:1534432-1534451 | MsG0580024171.01.T01:CDS | 30.0% | |
| CTCCATATTATACCTGTTTA+GGG | - | Chr5:1535571-1535590 | None:intergenic | 30.0% | |
| CTGTCCTATATTATTCTCAA+AGG | + | Chr5:1534124-1534143 | MsG0580024171.01.T01:CDS | 30.0% | |
| GCAAATTCAATCTATCTCAT+AGG | + | Chr5:1533953-1533972 | MsG0580024171.01.T01:CDS | 30.0% | |
| GTTAATGCCCTCAATAAATA+TGG | + | Chr5:1535309-1535328 | MsG0580024171.01.T01:CDS | 30.0% | |
| GTTGAAGCAAGCATAATAAA+TGG | - | Chr5:1533998-1534017 | None:intergenic | 30.0% | |
| TAACCAGTTTATCAACCAAA+TGG | + | Chr5:1534671-1534690 | MsG0580024171.01.T01:intron | 30.0% | |
| TCAATGCTATAGCTGAAAAT+AGG | + | Chr5:1535472-1535491 | MsG0580024171.01.T01:CDS | 30.0% | |
| TCATATGGTAGAATCCATAA+AGG | + | Chr5:1535344-1535363 | MsG0580024171.01.T01:CDS | 30.0% | |
| TCCATATTATACCTGTTTAG+GGG | - | Chr5:1535570-1535589 | None:intergenic | 30.0% | |
| TCTCCATATTATACCTGTTT+AGG | - | Chr5:1535572-1535591 | None:intergenic | 30.0% | |
| TTGAATGTTTGAATTGATGG+TGG | + | Chr5:1535710-1535729 | MsG0580024171.01.T01:three_prime_UTR | 30.0% | |
| ! | CTTTAGTTTACGTCTTATTC+TGG | - | Chr5:1534919-1534938 | None:intergenic | 30.0% |
| ! | TTTTCAGATTTCGAAGAATG+TGG | + | Chr5:1535252-1535271 | MsG0580024171.01.T01:CDS | 30.0% |
| AAGCAACTAAGACAACGAAT+TGG | + | Chr5:1534719-1534738 | MsG0580024171.01.T01:CDS | 35.0% | |
| AATCACATGGAAATTATGGC+TGG | + | Chr5:1533889-1533908 | MsG0580024171.01.T01:exon | 35.0% | |
| ACTTCTTACTCCTTACAAGA+TGG | + | Chr5:1533930-1533949 | MsG0580024171.01.T01:CDS | 35.0% | |
| ATCTTGTAAGGAGTAAGAAG+TGG | - | Chr5:1533931-1533950 | None:intergenic | 35.0% | |
| CTTCTTACTCCTTACAAGAT+GGG | + | Chr5:1533931-1533950 | MsG0580024171.01.T01:CDS | 35.0% | |
| CTTTCATGAATTGCTCAAGT+AGG | - | Chr5:1535104-1535123 | None:intergenic | 35.0% | |
| GAAGCTGTTGTAAATGAGAT+AGG | + | Chr5:1535198-1535217 | MsG0580024171.01.T01:CDS | 35.0% | |
| GCATTAAGTGCAAATCTCTT+TGG | - | Chr5:1535546-1535565 | None:intergenic | 35.0% | |
| GTTGTTGTATGATCTTTGTC+TGG | - | Chr5:1534088-1534107 | None:intergenic | 35.0% | |
| TAAGGAGTAAGAAGTGGAAT+GGG | - | Chr5:1533925-1533944 | None:intergenic | 35.0% | |
| TATGATCTTTGTCTGGTCAA+CGG | - | Chr5:1534081-1534100 | None:intergenic | 35.0% | |
| TCAAATTTGGCATGTTGGAA+GGG | + | Chr5:1534445-1534464 | MsG0580024171.01.T01:CDS | 35.0% | |
| TCATTCAAGAAAAGGGTAGT+CGG | - | Chr5:1535628-1535647 | None:intergenic | 35.0% | |
| TCCCCTAAACAGGTATAATA+TGG | + | Chr5:1535566-1535585 | MsG0580024171.01.T01:CDS | 35.0% | |
| TGCTTGTCTGTAGAAGATAT+CGG | - | Chr5:1534704-1534723 | None:intergenic | 35.0% | |
| TGTTGTAAATGAGATAGGTG+CGG | + | Chr5:1535203-1535222 | MsG0580024171.01.T01:CDS | 35.0% | |
| TGTTGTACTTGTAGCATGTA+AGG | + | Chr5:1535657-1535676 | MsG0580024171.01.T01:three_prime_UTR | 35.0% | |
| TTCTGTCAAATTTGGCATGT+TGG | + | Chr5:1534440-1534459 | MsG0580024171.01.T01:CDS | 35.0% | |
| TTGAATTTGCCCATCTTGTA+AGG | - | Chr5:1533943-1533962 | None:intergenic | 35.0% | |
| TTGATGGGGTTGAAATTCAT+GGG | + | Chr5:1535067-1535086 | MsG0580024171.01.T01:CDS | 35.0% | |
| TTTGATGGGGTTGAAATTCA+TGG | + | Chr5:1535066-1535085 | MsG0580024171.01.T01:CDS | 35.0% | |
| ! | AGGCCCTTTGAGAATAATAT+AGG | - | Chr5:1534131-1534150 | None:intergenic | 35.0% |
| !! | GAACCGTTGTAGATTTGTTT+TGG | + | Chr5:1535167-1535186 | MsG0580024171.01.T01:CDS | 35.0% |
| !! | TGCACATTGTAGGTTTTGAT+GGG | + | Chr5:1535052-1535071 | MsG0580024171.01.T01:intron | 35.0% |
| !! | TGTCCATTTGGTTGATAAAC+TGG | - | Chr5:1534677-1534696 | None:intergenic | 35.0% |
| AACCGAATGTCTTCACAACT+TGG | + | Chr5:1535383-1535402 | MsG0580024171.01.T01:CDS | 40.0% | |
| ACAGAAGAATGTAGCACCTT+TGG | - | Chr5:1534426-1534445 | None:intergenic | 40.0% | |
| AGAGGCTATGAAAGACAAGA+TGG | + | Chr5:1535447-1535466 | MsG0580024171.01.T01:CDS | 40.0% | |
| AGGGCAGATCTTATTGCTTA+CGG | + | Chr5:1535492-1535511 | MsG0580024171.01.T01:CDS | 40.0% | |
| ATCTTGTCTTTCATAGCCTC+TGG | - | Chr5:1535448-1535467 | None:intergenic | 40.0% | |
| ATGTAAAGCCCCAATACCTT+CGG | - | Chr5:1535288-1535307 | None:intergenic | 40.0% | |
| ATTCAAACACACCTGGCATA+TGG | + | Chr5:1534351-1534370 | MsG0580024171.01.T01:CDS | 40.0% | |
| CAACTAAGACAACGAATTGG+AGG | + | Chr5:1534722-1534741 | MsG0580024171.01.T01:CDS | 40.0% | |
| CACCAAGTTGTGAAGACATT+CGG | - | Chr5:1535388-1535407 | None:intergenic | 40.0% | |
| CCAATGAGAAAGGCTTTCAA+TGG | + | Chr5:1535408-1535427 | MsG0580024171.01.T01:CDS | 40.0% | |
| CCATTGAAAGCCTTTCTCAT+TGG | - | Chr5:1535411-1535430 | None:intergenic | 40.0% | |
| CTAATTGTGGTGCACATTGT+AGG | + | Chr5:1535042-1535061 | MsG0580024171.01.T01:intron | 40.0% | |
| GACAGAACAGATGAATATGG+CGG | + | Chr5:1535135-1535154 | MsG0580024171.01.T01:CDS | 40.0% | |
| GAGGCTATGAAAGACAAGAT+GGG | + | Chr5:1535448-1535467 | MsG0580024171.01.T01:CDS | 40.0% | |
| GCAAATCTCTTTGGCAAATC+TGG | - | Chr5:1535537-1535556 | None:intergenic | 40.0% | |
| GCAAGAAATGCTATTGAAGC+TGG | + | Chr5:1534833-1534852 | MsG0580024171.01.T01:CDS | 40.0% | |
| GTAAGGAGTAAGAAGTGGAA+TGG | - | Chr5:1533926-1533945 | None:intergenic | 40.0% | |
| GTACTTGTAGCATGTAAGGA+TGG | + | Chr5:1535661-1535680 | MsG0580024171.01.T01:three_prime_UTR | 40.0% | |
| GTCAAATTTGGCATGTTGGA+AGG | + | Chr5:1534444-1534463 | MsG0580024171.01.T01:CDS | 40.0% | |
| GTTGGAAGGGTTTCTAATTC+TGG | + | Chr5:1534458-1534477 | MsG0580024171.01.T01:CDS | 40.0% | |
| TATCACAATTCACACAACCG+AGG | + | Chr5:1534759-1534778 | MsG0580024171.01.T01:CDS | 40.0% | |
| TGATGGGGTTGAAATTCATG+GGG | + | Chr5:1535068-1535087 | MsG0580024171.01.T01:CDS | 40.0% | |
| ! | AGACTCAAATCCGAAGGTAT+TGG | + | Chr5:1535275-1535294 | MsG0580024171.01.T01:CDS | 40.0% |
| ! | CTTCTCATATCTGAAGCTAC+CGG | + | Chr5:1534162-1534181 | MsG0580024171.01.T01:CDS | 40.0% |
| ! | TTCTCATATCTGAAGCTACC+GGG | + | Chr5:1534163-1534182 | MsG0580024171.01.T01:CDS | 40.0% |
| !! | ACTCAAATCCGAAGGTATTG+GGG | + | Chr5:1535277-1535296 | MsG0580024171.01.T01:CDS | 40.0% |
| !! | GACTCAAATCCGAAGGTATT+GGG | + | Chr5:1535276-1535295 | MsG0580024171.01.T01:CDS | 40.0% |
| !! | GCACATTGTAGGTTTTGATG+GGG | + | Chr5:1535053-1535072 | MsG0580024171.01.T01:intron | 40.0% |
| !! | GTGCACATTGTAGGTTTTGA+TGG | + | Chr5:1535051-1535070 | MsG0580024171.01.T01:intron | 40.0% |
| ATGTGGAGACTCAAATCCGA+AGG | + | Chr5:1535269-1535288 | MsG0580024171.01.T01:CDS | 45.0% | |
| CACTTAATGCTCCCCTAAAC+AGG | + | Chr5:1535556-1535575 | MsG0580024171.01.T01:CDS | 45.0% | |
| GAGATAGGTGCGGAAAAAGT+TGG | + | Chr5:1535213-1535232 | MsG0580024171.01.T01:CDS | 45.0% | |
| GGCTTTCAATGGCACTTTCA+TGG | + | Chr5:1535419-1535438 | MsG0580024171.01.T01:CDS | 45.0% | |
| GTTGAAATTCATGGGGCTAC+TGG | + | Chr5:1535075-1535094 | MsG0580024171.01.T01:CDS | 45.0% | |
| TAGTCGGTATAGCCAAGAAC+TGG | - | Chr5:1535612-1535631 | None:intergenic | 45.0% | |
| TATAGGACAGCATGCTGTTG+AGG | - | Chr5:1534114-1534133 | None:intergenic | 45.0% | |
| TATGAGAAGACCACCTTCAG+AGG | - | Chr5:1534151-1534170 | None:intergenic | 45.0% | |
| TATTCTCAAAGGGCCTCTGA+AGG | + | Chr5:1534135-1534154 | MsG0580024171.01.T01:CDS | 45.0% | |
| TCTTCTGTTCTTAGCCTCCT+CGG | - | Chr5:1534779-1534798 | None:intergenic | 45.0% | |
| TGCACTTCTGATCCAGTTCT+TGG | + | Chr5:1535597-1535616 | MsG0580024171.01.T01:CDS | 45.0% | |
| ! | GATATCGGTGCTTGTCCATT+TGG | - | Chr5:1534689-1534708 | None:intergenic | 45.0% |
| ! | TCTCATATCTGAAGCTACCG+GGG | + | Chr5:1534164-1534183 | MsG0580024171.01.T01:CDS | 45.0% |
| ! | TGCTCTTTTGTCCATATGCC+AGG | - | Chr5:1534365-1534384 | None:intergenic | 45.0% |
| !! | CAACTTGGTGCCAATGAGAA+AGG | + | Chr5:1535398-1535417 | MsG0580024171.01.T01:CDS | 45.0% |
| !! | CGAAGGTATTCAAACACACC+TGG | + | Chr5:1534344-1534363 | MsG0580024171.01.T01:intron | 45.0% |
| !! | GAAGGTATTGGGGCTTTACA+TGG | + | Chr5:1535287-1535306 | MsG0580024171.01.T01:CDS | 45.0% |
| AGACAACGAATTGGAGGCGA+TGG | + | Chr5:1534728-1534747 | MsG0580024171.01.T01:CDS | 50.0% | |
| CAAAAGAGCAAGTCGTAGCG+TGG | + | Chr5:1534375-1534394 | MsG0580024171.01.T01:CDS | 50.0% | |
| CACAATTCACACAACCGAGG+AGG | + | Chr5:1534762-1534781 | MsG0580024171.01.T01:CDS | 50.0% | |
| GCATGAACAGCATCCACGAT+AGG | - | Chr5:1534404-1534423 | None:intergenic | 50.0% | |
| GGCACTTTCATGGTTACCAG+AGG | + | Chr5:1535429-1535448 | MsG0580024171.01.T01:CDS | 50.0% | |
| GTGGATGCTGTTCATGCCAA+AGG | + | Chr5:1534407-1534426 | MsG0580024171.01.T01:CDS | 50.0% | |
| TTGAGCAGTTTCAGAGACCC+CGG | - | Chr5:1534184-1534203 | None:intergenic | 50.0% | |
| !! | GGGTCTCTGAAACTGCTCAA+GGG | + | Chr5:1534184-1534203 | MsG0580024171.01.T01:CDS | 50.0% |
| CGTAGCGTGGAAACCTATCG+TGG | + | Chr5:1534388-1534407 | MsG0580024171.01.T01:CDS | 55.0% | |
| ! | TCTCAAAGGGCCTCTGAAGG+TGG | + | Chr5:1534138-1534157 | MsG0580024171.01.T01:CDS | 55.0% |
| !! | GGGGTCTCTGAAACTGCTCA+AGG | + | Chr5:1534183-1534202 | MsG0580024171.01.T01:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 1533793 | 1535762 | 1533793 | ID=MsG0580024171.01;Name=MsG0580024171.01 |
| Chr5 | mRNA | 1533793 | 1535762 | 1533793 | ID=MsG0580024171.01.T01;Parent=MsG0580024171.01;Name=MsG0580024171.01.T01;_AED=0.49;_eAED=0.49;_QI=102|0.25|0.6|1|1|1|5|115|370 |
| Chr5 | exon | 1533793 | 1533974 | 1533793 | ID=MsG0580024171.01.T01:exon:23451;Parent=MsG0580024171.01.T01 |
| Chr5 | exon | 1534065 | 1534205 | 1534065 | ID=MsG0580024171.01.T01:exon:23452;Parent=MsG0580024171.01.T01 |
| Chr5 | exon | 1534349 | 1534479 | 1534349 | ID=MsG0580024171.01.T01:exon:23453;Parent=MsG0580024171.01.T01 |
| Chr5 | exon | 1534678 | 1534854 | 1534678 | ID=MsG0580024171.01.T01:exon:23454;Parent=MsG0580024171.01.T01 |
| Chr5 | exon | 1535064 | 1535762 | 1535064 | ID=MsG0580024171.01.T01:exon:23455;Parent=MsG0580024171.01.T01 |
| Chr5 | five_prime_UTR | 1533793 | 1533894 | 1533793 | ID=MsG0580024171.01.T01:five_prime_utr;Parent=MsG0580024171.01.T01 |
| Chr5 | CDS | 1533895 | 1533974 | 1533895 | ID=MsG0580024171.01.T01:cds;Parent=MsG0580024171.01.T01 |
| Chr5 | CDS | 1534065 | 1534205 | 1534065 | ID=MsG0580024171.01.T01:cds;Parent=MsG0580024171.01.T01 |
| Chr5 | CDS | 1534349 | 1534479 | 1534349 | ID=MsG0580024171.01.T01:cds;Parent=MsG0580024171.01.T01 |
| Chr5 | CDS | 1534678 | 1534854 | 1534678 | ID=MsG0580024171.01.T01:cds;Parent=MsG0580024171.01.T01 |
| Chr5 | CDS | 1535064 | 1535647 | 1535064 | ID=MsG0580024171.01.T01:cds;Parent=MsG0580024171.01.T01 |
| Chr5 | three_prime_UTR | 1535648 | 1535762 | 1535648 | ID=MsG0580024171.01.T01:three_prime_utr;Parent=MsG0580024171.01.T01 |
| Gene Sequence |
| Protein sequence |
