Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024178.01.T01 | XP_003610767.1 | 96.496 | 371 | 13 | 0 | 1 | 371 | 1 | 371 | 0 | 751 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024178.01.T01 | B9FSC8 | 76.923 | 364 | 82 | 1 | 7 | 370 | 2 | 363 | 0 | 605 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024178.01.T01 | G7K3S2 | 96.496 | 371 | 13 | 0 | 1 | 371 | 1 | 371 | 0.0 | 751 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180003992.01 | MsG0580024178.01 | 0.809232 | 2.095255e-50 | 1.223484e-47 |
| MsG0180004941.01 | MsG0580024178.01 | 0.835678 | 1.459151e-56 | 1.797240e-53 |
| MsG0480022308.01 | MsG0580024178.01 | 0.804459 | 2.138973e-49 | 1.103431e-46 |
| MsG0580024178.01 | MsG0680031240.01 | 0.812436 | 4.244570e-51 | 2.698807e-48 |
| MsG0580024178.01 | MsG0680032167.01 | 0.814882 | 1.228734e-51 | 8.343662e-49 |
| MsG0580024178.01 | MsG0680034317.01 | 0.813495 | 2.486292e-51 | 1.626270e-48 |
| MsG0580024178.01 | MsG0780039978.01 | 0.807147 | 5.826504e-50 | 3.220709e-47 |
| MsG0580024178.01 | MsG0780041510.01 | 0.849376 | 3.365873e-60 | 6.368319e-57 |
| MsG0580024178.01 | MsG0780041612.01 | 0.830681 | 2.560950e-55 | 2.717542e-52 |
| MsG0380015369.01 | MsG0580024178.01 | 0.817267 | 3.604062e-52 | 2.612218e-49 |
| MsG0380015541.01 | MsG0580024178.01 | 0.813612 | 2.344180e-51 | 1.538129e-48 |
| MsG0380016360.01 | MsG0580024178.01 | 0.807573 | 4.732266e-50 | 2.644942e-47 |
| MsG0380017610.01 | MsG0580024178.01 | 0.802694 | 4.968646e-49 | 2.449836e-46 |
| MsG0280006964.01 | MsG0580024178.01 | -0.803360 | 3.618161e-49 | 1.814471e-46 |
PPI
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024178.01.T01 | MTR_5g006780 | 96.496 | 371 | 13 | 0 | 1 | 371 | 1 | 371 | 0.0 | 751 |
| MsG0580024178.01.T01 | MTR_5g006800 | 91.644 | 371 | 29 | 1 | 1 | 371 | 1 | 369 | 0.0 | 714 |
| MsG0580024178.01.T01 | MTR_5g006750 | 87.601 | 371 | 46 | 0 | 1 | 371 | 1 | 371 | 0.0 | 693 |
| MsG0580024178.01.T01 | MTR_5g006670 | 85.559 | 367 | 45 | 3 | 5 | 371 | 1 | 359 | 0.0 | 648 |
| MsG0580024178.01.T01 | MTR_5g006740 | 82.289 | 367 | 63 | 1 | 5 | 371 | 1 | 365 | 0.0 | 644 |
| MsG0580024178.01.T01 | MTR_5g006710 | 82.740 | 365 | 55 | 2 | 7 | 371 | 7 | 363 | 0.0 | 632 |
| MsG0580024178.01.T01 | MTR_5g008040 | 80.811 | 370 | 69 | 1 | 1 | 370 | 3 | 370 | 0.0 | 631 |
| MsG0580024178.01.T01 | MTR_5g006740 | 78.202 | 367 | 61 | 2 | 5 | 371 | 1 | 348 | 0.0 | 597 |
| MsG0580024178.01.T01 | MTR_5g006720 | 72.823 | 379 | 63 | 3 | 4 | 371 | 3 | 352 | 0.0 | 555 |
| MsG0580024178.01.T01 | MTR_3g115600 | 68.956 | 364 | 107 | 2 | 8 | 371 | 6 | 363 | 0.0 | 530 |
| MsG0580024178.01.T01 | MTR_4g125470 | 52.815 | 373 | 159 | 5 | 12 | 370 | 19 | 388 | 1.29e-138 | 400 |
| MsG0580024178.01.T01 | MTR_5g006730 | 76.471 | 119 | 26 | 1 | 1 | 119 | 1 | 117 | 8.56e-59 | 187 |
| MsG0580024178.01.T01 | MTR_3g096570 | 73.494 | 83 | 18 | 2 | 173 | 254 | 3 | 82 | 5.52e-32 | 121 |
| MsG0580024178.01.T01 | MTR_3g096562 | 67.045 | 88 | 26 | 1 | 167 | 254 | 162 | 246 | 4.22e-30 | 119 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024178.01.T01 | AT1G76690 | 76.550 | 371 | 85 | 1 | 1 | 371 | 3 | 371 | 0.0 | 605 |
| MsG0580024178.01.T01 | AT1G76680 | 77.410 | 363 | 80 | 1 | 9 | 371 | 9 | 369 | 0.0 | 598 |
| MsG0580024178.01.T01 | AT1G76680 | 72.423 | 388 | 80 | 2 | 9 | 371 | 9 | 394 | 0.0 | 585 |
| MsG0580024178.01.T01 | AT1G09400 | 68.675 | 332 | 96 | 2 | 18 | 349 | 1 | 324 | 2.54e-175 | 491 |
| MsG0580024178.01.T01 | AT1G09400 | 70.370 | 270 | 74 | 1 | 80 | 349 | 2 | 265 | 6.44e-145 | 411 |
| MsG0580024178.01.T01 | AT2G06050 | 51.459 | 377 | 162 | 5 | 12 | 370 | 12 | 385 | 4.61e-136 | 394 |
| MsG0580024178.01.T01 | AT2G06050 | 51.459 | 377 | 162 | 5 | 12 | 370 | 12 | 385 | 4.61e-136 | 394 |
| MsG0580024178.01.T01 | AT2G06050 | 51.459 | 377 | 162 | 5 | 12 | 370 | 12 | 385 | 4.61e-136 | 394 |
| MsG0580024178.01.T01 | AT1G17990 | 70.000 | 260 | 71 | 3 | 9 | 268 | 6 | 258 | 1.49e-134 | 385 |
| MsG0580024178.01.T01 | AT1G18020 | 70.000 | 260 | 71 | 3 | 9 | 268 | 6 | 258 | 1.49e-134 | 385 |
| MsG0580024178.01.T01 | AT1G17990 | 66.923 | 260 | 71 | 4 | 9 | 268 | 6 | 250 | 5.91e-126 | 363 |
Find 110 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAAATCTCTTTGGCAAATC+TGG | 0.201994 | 5:-1597615 | None:intergenic |
| TAACGAATTGGGACTTTATA+TGG | 0.209345 | 5:+1597368 | MsG0580024178.01.T01:CDS |
| TCTACTTACTCCATACAAAA+TGG | 0.231158 | 5:+1596292 | MsG0580024178.01.T01:CDS |
| GTTGGAAGAGTTTCTGATTC+TGG | 0.251518 | 5:+1596678 | MsG0580024178.01.T01:CDS |
| GCTTACTCTTACTAACTCTT+TGG | 0.283386 | 5:+1597871 | MsG0580024178.01.T01:three_prime_UTR |
| TACATTTCTGATCCAGTTCT+AGG | 0.288195 | 5:+1597678 | MsG0580024178.01.T01:CDS |
| ATTTCATTTCAGAGTTGTTT+TGG | 0.300909 | 5:+1596410 | MsG0580024178.01.T01:intron |
| CTCCTCTGAACAAGTATAAC+AGG | 0.317873 | 5:+1597646 | MsG0580024178.01.T01:CDS |
| GTTAATGCTCTCAATAAATA+TGG | 0.321513 | 5:+1597390 | MsG0580024178.01.T01:CDS |
| CTCATTGGCACAAGGGTGTC+GGG | 0.341149 | 5:-1597474 | None:intergenic |
| ATCCAGACACGCCAGGTATA+TGG | 0.350535 | 5:+1596571 | MsG0580024178.01.T01:CDS |
| GTCCATATACCTGGCGTGTC+TGG | 0.353329 | 5:-1596573 | None:intergenic |
| CCTTTGAAGGCCTTTCTCAT+TGG | 0.383217 | 5:-1597489 | None:intergenic |
| TCAATGCCATAGTTGAAAAC+AGG | 0.384857 | 5:+1597553 | MsG0580024178.01.T01:CDS |
| AGACTCCAACCCTAACGAAT+TGG | 0.384935 | 5:+1597356 | MsG0580024178.01.T01:CDS |
| AAACCATTACTTCGAATTTG+TGG | 0.394649 | 5:-1596862 | None:intergenic |
| ATATAAAGTCCCAATTCGTT+AGG | 0.397047 | 5:-1597366 | None:intergenic |
| TGGTATTCTTTACTGTCATA+TGG | 0.399133 | 5:+1597410 | MsG0580024178.01.T01:CDS |
| GCATCAAGTGCAAATCTCTT+TGG | 0.407422 | 5:-1597624 | None:intergenic |
| ATGTGTTATTGATTCTTCTC+AGG | 0.409773 | 5:+1597849 | MsG0580024178.01.T01:three_prime_UTR |
| AGGGCAGACCTTGTTGTATA+TGG | 0.411291 | 5:+1597573 | MsG0580024178.01.T01:CDS |
| CTGAAGTCATTGACAATGTT+CGG | 0.412919 | 5:-1596934 | None:intergenic |
| GATGATGTAGCATCCAAGTA+TGG | 0.415342 | 5:+1597736 | MsG0580024178.01.T01:three_prime_UTR |
| GAGATAGGAGCTGATAAAGT+TGG | 0.416753 | 5:+1597294 | MsG0580024178.01.T01:CDS |
| GACTCCAACCCTAACGAATT+GGG | 0.419325 | 5:+1597357 | MsG0580024178.01.T01:CDS |
| GAACCGTTGTCGGTTTGCTT+TGG | 0.420051 | 5:+1597248 | MsG0580024178.01.T01:CDS |
| TAGTGAGGAGATTCCATACT+TGG | 0.434373 | 5:-1597749 | None:intergenic |
| TCATCTGTCCTTAGCCGCCT+TGG | 0.434930 | 5:-1596907 | None:intergenic |
| CTACTTACTCCATACAAAAT+GGG | 0.440009 | 5:+1596293 | MsG0580024178.01.T01:CDS |
| AACCATAAAAGTGCCTTTGA+AGG | 0.444091 | 5:-1597502 | None:intergenic |
| CATTTACAAAATGTGTGATC+TGG | 0.444256 | 5:-1597896 | None:intergenic |
| GTGCAAATTGCAGGATTTGA+TGG | 0.444981 | 5:+1597132 | MsG0580024178.01.T01:intron |
| CTCACAAGACAAAGATCATA+TGG | 0.449702 | 5:+1596438 | MsG0580024178.01.T01:CDS |
| GCAAATTCGATCTATCTCAT+AGG | 0.451023 | 5:+1596315 | MsG0580024178.01.T01:CDS |
| TCTCATTGGCACAAGGGTGT+CGG | 0.460212 | 5:-1597475 | None:intergenic |
| GCATGAACAGCATCCACAAT+GGG | 0.464445 | 5:-1596621 | None:intergenic |
| GACTTATCTGTAGATGATAT+TGG | 0.464557 | 5:-1596832 | None:intergenic |
| AATGACAGAACAGATGAATA+TGG | 0.470052 | 5:+1597213 | MsG0580024178.01.T01:CDS |
| CATTCTGCATATTCTGCAAA+AGG | 0.473703 | 5:-1597330 | None:intergenic |
| TTTGATGGGGTTGAAATCCA+TGG | 0.479079 | 5:+1597147 | MsG0580024178.01.T01:CDS |
| TAGTCAGTATAACCTAGAAC+TGG | 0.480015 | 5:-1597690 | None:intergenic |
| GTCAGAGACACCGGTAGCTT+CGG | 0.483228 | 5:-1596535 | None:intergenic |
| CACCCTTGTGCCAATGAGAA+AGG | 0.484128 | 5:+1597479 | MsG0580024178.01.T01:CDS |
| GATATTGGTGTCTGTCCATT+CGG | 0.484364 | 5:-1596817 | None:intergenic |
| GTTGAAATCCATGGGGCTCA+TGG | 0.498562 | 5:+1597156 | MsG0580024178.01.T01:CDS |
| TAGAGGATAGCATGAGGTTG+TGG | 0.502110 | 5:-1596468 | None:intergenic |
| TGCAAATTGCAGGATTTGAT+GGG | 0.502113 | 5:+1597133 | MsG0580024178.01.T01:intron |
| CAGAGAGCCACCGGCTCTAA+CGG | 0.506975 | 5:+1596498 | MsG0580024178.01.T01:CDS |
| ACACCACAAATTCGAAGTAA+TGG | 0.507759 | 5:+1596859 | MsG0580024178.01.T01:CDS |
| CGTAATCAAGTGAAAATGGC+TGG | 0.509462 | 5:+1596245 | None:intergenic |
| ATTTACAAAATGTGTGATCT+GGG | 0.517281 | 5:-1597895 | None:intergenic |
| ATGCCAAATCTGACAAAAGA+AGG | 0.517640 | 5:-1596655 | None:intergenic |
| GAAGCTGTTGCAAATGAGAT+AGG | 0.518438 | 5:+1597279 | MsG0580024178.01.T01:CDS |
| TATAAAGTCCCAATTCGTTA+GGG | 0.522588 | 5:-1597365 | None:intergenic |
| CTAAAGAGCACGTCGAGGGT+TGG | 0.526647 | 5:+1596595 | MsG0580024178.01.T01:CDS |
| TGGCTCTCTGTGAATAATAG+AGG | 0.529112 | 5:-1596485 | None:intergenic |
| GATCCCTTGAGAACCGTTGT+CGG | 0.529555 | 5:+1597238 | MsG0580024178.01.T01:CDS |
| TTGATGGGGTTGAAATCCAT+GGG | 0.529612 | 5:+1597148 | MsG0580024178.01.T01:CDS |
| CTTTCATGAATTGTTCAAGT+AGG | 0.530510 | 5:-1597182 | None:intergenic |
| CAAACCGACAACGGTTCTCA+AGG | 0.533263 | 5:-1597242 | None:intergenic |
| TCTGTCCTTAGCCGCCTTGG+TGG | 0.535739 | 5:-1596904 | None:intergenic |
| AAGTCCCAATTCGTTAGGGT+TGG | 0.539732 | 5:-1597361 | None:intergenic |
| TCACACCACCAAGGCGGCTA+AGG | 0.540861 | 5:+1596899 | MsG0580024178.01.T01:CDS |
| ACTTGCTGCTAGAAATGCTA+TGG | 0.544349 | 5:+1596957 | MsG0580024178.01.T01:CDS |
| GTGGATGCTGTTCATGCTAA+AGG | 0.544472 | 5:+1596627 | MsG0580024178.01.T01:CDS |
| GCTAGAAATGCTATGGAAGC+TGG | 0.548470 | 5:+1596964 | MsG0580024178.01.T01:CDS |
| CAAGGGTATCCAGACACGCC+AGG | 0.555989 | 5:+1596564 | MsG0580024178.01.T01:CDS |
| AGGCCTTTCTCATTGGCACA+AGG | 0.557050 | 5:-1597482 | None:intergenic |
| GGTGTCTCTGACACCGCTCA+AGG | 0.561959 | 5:+1596546 | MsG0580024178.01.T01:CDS |
| GTATGGAGTAAGTAGAGGAA+TGG | 0.563542 | 5:-1596285 | None:intergenic |
| GAGAAGACCTCCGTTAGAGC+CGG | 0.566754 | 5:-1596508 | None:intergenic |
| GGAGGTTACGACCGACATGA+TGG | 0.569456 | 5:+1597528 | MsG0580024178.01.T01:CDS |
| CTTCTCATAACCGAAGCTAC+CGG | 0.572746 | 5:+1596525 | MsG0580024178.01.T01:CDS |
| CCAATGAGAAAGGCCTTCAA+AGG | 0.575485 | 5:+1597489 | MsG0580024178.01.T01:CDS |
| ATAGCAGAAAGCAATTTGCA+AGG | 0.580158 | 5:-1597787 | None:intergenic |
| TATTATTCACAGAGAGCCAC+CGG | 0.583608 | 5:+1596489 | MsG0580024178.01.T01:CDS |
| TCAACAGTTTATCAGCCGAA+TGG | 0.583793 | 5:+1596802 | MsG0580024178.01.T01:intron |
| GGCCTTTCTCATTGGCACAA+GGG | 0.585236 | 5:-1597481 | None:intergenic |
| TGCTCTTTAGTCCATATACC+TGG | 0.585344 | 5:-1596582 | None:intergenic |
| TAGCAGAAAGCAATTTGCAA+GGG | 0.586244 | 5:-1597786 | None:intergenic |
| GATAATGAACTTATTTAGTG+AGG | 0.593789 | 5:-1597764 | None:intergenic |
| TTTGCAGAATATGCAGAATG+TGG | 0.598992 | 5:+1597333 | MsG0580024178.01.T01:CDS |
| AAGACCTCCGTTAGAGCCGG+TGG | 0.607283 | 5:-1596505 | None:intergenic |
| TGGACTAAAGAGCACGTCGA+GGG | 0.607303 | 5:+1596591 | MsG0580024178.01.T01:CDS |
| GAGGTTACGACCGACATGAT+GGG | 0.607847 | 5:+1597529 | MsG0580024178.01.T01:CDS |
| TCATTGGCACAAGGGTGTCG+GGG | 0.611088 | 5:-1597473 | None:intergenic |
| CAATGCCATAGTTGAAAACA+GGG | 0.613981 | 5:+1597554 | MsG0580024178.01.T01:CDS |
| TCCCTGTTATACTTGTTCAG+AGG | 0.614414 | 5:-1597648 | None:intergenic |
| TATGATCTTTGTCTTGTGAG+TGG | 0.615055 | 5:-1596435 | None:intergenic |
| GTGTCTCTGACACCGCTCAA+GGG | 0.616121 | 5:+1596547 | MsG0580024178.01.T01:CDS |
| CGAGGGTTGGAAACCCATTG+TGG | 0.618914 | 5:+1596608 | MsG0580024178.01.T01:CDS |
| CTTCCAAAGCAAACCGACAA+CGG | 0.620487 | 5:-1597251 | None:intergenic |
| TATTCTTTACTGTCATATGG+TGG | 0.623581 | 5:+1597413 | MsG0580024178.01.T01:CDS |
| GTAGGTAGCCATGAGCCCCA+TGG | 0.625089 | 5:-1597164 | None:intergenic |
| AAACCGACAACGGTTCTCAA+GGG | 0.626011 | 5:-1597241 | None:intergenic |
| AGCATGAACAGCATCCACAA+TGG | 0.632785 | 5:-1596622 | None:intergenic |
| TTGAGCGGTGTCAGAGACAC+CGG | 0.633714 | 5:-1596544 | None:intergenic |
| GAACCAAGAATGAAAACTGT+TGG | 0.645257 | 5:+1597435 | MsG0580024178.01.T01:CDS |
| GACAGAACAGATGAATATGG+TGG | 0.647355 | 5:+1597216 | MsG0580024178.01.T01:CDS |
| AGAGCCACCGGCTCTAACGG+AGG | 0.647688 | 5:+1596501 | MsG0580024178.01.T01:CDS |
| GCAAATTGCAGGATTTGATG+GGG | 0.659323 | 5:+1597134 | MsG0580024178.01.T01:intron |
| TCCTCTGAACAAGTATAACA+GGG | 0.662663 | 5:+1597647 | MsG0580024178.01.T01:CDS |
| TGGCATTGATCCCATCATGT+CGG | 0.672348 | 5:-1597539 | None:intergenic |
| TTGCAAAATTCACACCACCA+AGG | 0.704294 | 5:+1596890 | MsG0580024178.01.T01:CDS |
| CGTGTCTGGATACCCTTGAG+CGG | 0.705121 | 5:-1596559 | None:intergenic |
| ATGGACTAAAGAGCACGTCG+AGG | 0.705852 | 5:+1596590 | MsG0580024178.01.T01:CDS |
| ACAAACGACCATATACAACA+AGG | 0.713799 | 5:-1597581 | None:intergenic |
| GAATAATAGAGGATAGCATG+AGG | 0.726209 | 5:-1596474 | None:intergenic |
| TGATGGGGTTGAAATCCATG+GGG | 0.726824 | 5:+1597149 | MsG0580024178.01.T01:CDS |
| CAAAATTCACACCACCAAGG+CGG | 0.740755 | 5:+1596893 | MsG0580024178.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAATTTTTTATTTTATTT+TGG | - | Chr5:1597017-1597036 | None:intergenic | 0.0% |
| !!! | AATTGTAATTTTATAAAATC+AGG | - | Chr5:1598012-1598031 | None:intergenic | 10.0% |
| !!! | TGAAATAAGATTTAATTTTG+AGG | + | Chr5:1597821-1597840 | MsG0580024178.01.T01:three_prime_UTR | 15.0% |
| !! | ATAAACTGTTGAAAATAACA+TGG | - | Chr5:1596794-1596813 | None:intergenic | 20.0% |
| !! | TATGAACATATGTGTATAAT+AGG | - | Chr5:1596732-1596751 | None:intergenic | 20.0% |
| !! | TTGAAAATAACATGGAAAAT+GGG | - | Chr5:1596786-1596805 | None:intergenic | 20.0% |
| !!! | AGTTTTTATCGAAAACTTAT+TGG | - | Chr5:1597984-1598003 | None:intergenic | 20.0% |
| ! | ATTATGTAACATACTAACTG+TGG | + | Chr5:1597110-1597129 | MsG0580024178.01.T01:intron | 25.0% |
| ! | ATTTACAAAATGTGTGATCT+GGG | - | Chr5:1597898-1597917 | None:intergenic | 25.0% |
| ! | GATAATGAACTTATTTAGTG+AGG | - | Chr5:1597767-1597786 | None:intergenic | 25.0% |
| ! | GTTAATGCTCTCAATAAATA+TGG | + | Chr5:1597390-1597409 | MsG0580024178.01.T01:CDS | 25.0% |
| ! | GTTGAAAATAACATGGAAAA+TGG | - | Chr5:1596787-1596806 | None:intergenic | 25.0% |
| !! | ATTTCATTTCAGAGTTGTTT+TGG | + | Chr5:1596410-1596429 | MsG0580024178.01.T01:intron | 25.0% |
| !!! | AAATCTTTTTGTTGCTTCAA+AGG | + | Chr5:1597069-1597088 | MsG0580024178.01.T01:intron | 25.0% |
| !!! | AATCTTTTTGTTGCTTCAAA+GGG | + | Chr5:1597070-1597089 | MsG0580024178.01.T01:intron | 25.0% |
| !!! | AGTTTTTTCATTCAAGAAAG+GGG | - | Chr5:1597716-1597735 | None:intergenic | 25.0% |
| !!! | CAGTTTTTTCATTCAAGAAA+GGG | - | Chr5:1597717-1597736 | None:intergenic | 25.0% |
| !!! | TCAGTTTTTTCATTCAAGAA+AGG | - | Chr5:1597718-1597737 | None:intergenic | 25.0% |
| AAACCATTACTTCGAATTTG+TGG | - | Chr5:1596865-1596884 | None:intergenic | 30.0% | |
| AATGACAGAACAGATGAATA+TGG | + | Chr5:1597213-1597232 | MsG0580024178.01.T01:CDS | 30.0% | |
| ATATAAAGTCCCAATTCGTT+AGG | - | Chr5:1597369-1597388 | None:intergenic | 30.0% | |
| CATTTACAAAATGTGTGATC+TGG | - | Chr5:1597899-1597918 | None:intergenic | 30.0% | |
| CTACTTACTCCATACAAAAT+GGG | + | Chr5:1596293-1596312 | MsG0580024178.01.T01:CDS | 30.0% | |
| CTTTCATGAATTGTTCAAGT+AGG | - | Chr5:1597185-1597204 | None:intergenic | 30.0% | |
| GACTTATCTGTAGATGATAT+TGG | - | Chr5:1596835-1596854 | None:intergenic | 30.0% | |
| TAACGAATTGGGACTTTATA+TGG | + | Chr5:1597368-1597387 | MsG0580024178.01.T01:CDS | 30.0% | |
| TATAAAGTCCCAATTCGTTA+GGG | - | Chr5:1597368-1597387 | None:intergenic | 30.0% | |
| TATTCTTTACTGTCATATGG+TGG | + | Chr5:1597413-1597432 | MsG0580024178.01.T01:CDS | 30.0% | |
| TCTACTTACTCCATACAAAA+TGG | + | Chr5:1596292-1596311 | MsG0580024178.01.T01:CDS | 30.0% | |
| TGGTATTCTTTACTGTCATA+TGG | + | Chr5:1597410-1597429 | MsG0580024178.01.T01:CDS | 30.0% | |
| ! | ACACATTTTGTAAATGGTCA+GGG | + | Chr5:1597903-1597922 | MsG0580024178.01.T01:three_prime_UTR | 30.0% |
| ! | ATTTTGTATGGAGTAAGTAG+AGG | - | Chr5:1596293-1596312 | None:intergenic | 30.0% |
| ! | CAGATCACACATTTTGTAAA+TGG | + | Chr5:1597897-1597916 | MsG0580024178.01.T01:three_prime_UTR | 30.0% |
| !! | ATGTGTTATTGATTCTTCTC+AGG | + | Chr5:1597849-1597868 | MsG0580024178.01.T01:three_prime_UTR | 30.0% |
| ACAAACGACCATATACAACA+AGG | - | Chr5:1597584-1597603 | None:intergenic | 35.0% | |
| ACACCACAAATTCGAAGTAA+TGG | + | Chr5:1596859-1596878 | MsG0580024178.01.T01:CDS | 35.0% | |
| ATAGCAGAAAGCAATTTGCA+AGG | - | Chr5:1597790-1597809 | None:intergenic | 35.0% | |
| ATGCCAAATCTGACAAAAGA+AGG | - | Chr5:1596658-1596677 | None:intergenic | 35.0% | |
| CAATGCCATAGTTGAAAACA+GGG | + | Chr5:1597554-1597573 | MsG0580024178.01.T01:CDS | 35.0% | |
| CATTCTGCATATTCTGCAAA+AGG | - | Chr5:1597333-1597352 | None:intergenic | 35.0% | |
| CTCACAAGACAAAGATCATA+TGG | + | Chr5:1596438-1596457 | MsG0580024178.01.T01:CDS | 35.0% | |
| CTGAAGTCATTGACAATGTT+CGG | - | Chr5:1596937-1596956 | None:intergenic | 35.0% | |
| GAACCAAGAATGAAAACTGT+TGG | + | Chr5:1597435-1597454 | MsG0580024178.01.T01:CDS | 35.0% | |
| GAATAATAGAGGATAGCATG+AGG | - | Chr5:1596477-1596496 | None:intergenic | 35.0% | |
| GCAAATTCGATCTATCTCAT+AGG | + | Chr5:1596315-1596334 | MsG0580024178.01.T01:CDS | 35.0% | |
| GCTTACTCTTACTAACTCTT+TGG | + | Chr5:1597871-1597890 | MsG0580024178.01.T01:three_prime_UTR | 35.0% | |
| TACATTTCTGATCCAGTTCT+AGG | + | Chr5:1597678-1597697 | MsG0580024178.01.T01:CDS | 35.0% | |
| TAGCAGAAAGCAATTTGCAA+GGG | - | Chr5:1597789-1597808 | None:intergenic | 35.0% | |
| TAGTCAGTATAACCTAGAAC+TGG | - | Chr5:1597693-1597712 | None:intergenic | 35.0% | |
| TATGATCTTTGTCTTGTGAG+TGG | - | Chr5:1596438-1596457 | None:intergenic | 35.0% | |
| TCAATGCCATAGTTGAAAAC+AGG | + | Chr5:1597553-1597572 | MsG0580024178.01.T01:CDS | 35.0% | |
| TCCTCTGAACAAGTATAACA+GGG | + | Chr5:1597647-1597666 | MsG0580024178.01.T01:CDS | 35.0% | |
| TGCAAATTGCAGGATTTGAT+GGG | + | Chr5:1597133-1597152 | MsG0580024178.01.T01:intron | 35.0% | |
| TTTGCAGAATATGCAGAATG+TGG | + | Chr5:1597333-1597352 | MsG0580024178.01.T01:CDS | 35.0% | |
| ! | CACACATTTTGTAAATGGTC+AGG | + | Chr5:1597902-1597921 | MsG0580024178.01.T01:three_prime_UTR | 35.0% |
| ! | CTACCTTCTTTTGTCAGATT+TGG | + | Chr5:1596652-1596671 | MsG0580024178.01.T01:CDS | 35.0% |
| ! | TCACCAACAGTTTTCATTCT+TGG | - | Chr5:1597441-1597460 | None:intergenic | 35.0% |
| ! | TCGAATTTGCCCATTTTGTA+TGG | - | Chr5:1596305-1596324 | None:intergenic | 35.0% |
| ! | TTTTGTCAGATTTGGCATGT+TGG | + | Chr5:1596660-1596679 | MsG0580024178.01.T01:CDS | 35.0% |
| !! | AACCATAAAAGTGCCTTTGA+AGG | - | Chr5:1597505-1597524 | None:intergenic | 35.0% |
| CTCCTCTGAACAAGTATAAC+AGG | + | Chr5:1597646-1597665 | MsG0580024178.01.T01:CDS | 40.0% | |
| GAAGCTGTTGCAAATGAGAT+AGG | + | Chr5:1597279-1597298 | MsG0580024178.01.T01:CDS | 40.0% | |
| GACAGAACAGATGAATATGG+TGG | + | Chr5:1597216-1597235 | MsG0580024178.01.T01:CDS | 40.0% | |
| GAGATAGGAGCTGATAAAGT+TGG | + | Chr5:1597294-1597313 | MsG0580024178.01.T01:CDS | 40.0% | |
| GATGATGTAGCATCCAAGTA+TGG | + | Chr5:1597736-1597755 | MsG0580024178.01.T01:three_prime_UTR | 40.0% | |
| GCAAATCTCTTTGGCAAATC+TGG | - | Chr5:1597618-1597637 | None:intergenic | 40.0% | |
| GCAAATTGCAGGATTTGATG+GGG | + | Chr5:1597134-1597153 | MsG0580024178.01.T01:intron | 40.0% | |
| GCATCAAGTGCAAATCTCTT+TGG | - | Chr5:1597627-1597646 | None:intergenic | 40.0% | |
| GTATGGAGTAAGTAGAGGAA+TGG | - | Chr5:1596288-1596307 | None:intergenic | 40.0% | |
| GTGCAAATTGCAGGATTTGA+TGG | + | Chr5:1597132-1597151 | MsG0580024178.01.T01:intron | 40.0% | |
| GTTGGAAGAGTTTCTGATTC+TGG | + | Chr5:1596678-1596697 | MsG0580024178.01.T01:CDS | 40.0% | |
| TAGTGAGGAGATTCCATACT+TGG | - | Chr5:1597752-1597771 | None:intergenic | 40.0% | |
| TATTATTCACAGAGAGCCAC+CGG | + | Chr5:1596489-1596508 | MsG0580024178.01.T01:CDS | 40.0% | |
| TCAACAGTTTATCAGCCGAA+TGG | + | Chr5:1596802-1596821 | MsG0580024178.01.T01:intron | 40.0% | |
| TCCCTGTTATACTTGTTCAG+AGG | - | Chr5:1597651-1597670 | None:intergenic | 40.0% | |
| TGCTCTTTAGTCCATATACC+TGG | - | Chr5:1596585-1596604 | None:intergenic | 40.0% | |
| TGGCTCTCTGTGAATAATAG+AGG | - | Chr5:1596488-1596507 | None:intergenic | 40.0% | |
| TTGATGGGGTTGAAATCCAT+GGG | + | Chr5:1597148-1597167 | MsG0580024178.01.T01:CDS | 40.0% | |
| TTGCAAAATTCACACCACCA+AGG | + | Chr5:1596890-1596909 | MsG0580024178.01.T01:CDS | 40.0% | |
| TTTGATGGGGTTGAAATCCA+TGG | + | Chr5:1597147-1597166 | MsG0580024178.01.T01:CDS | 40.0% | |
| ! | ACTTGCTGCTAGAAATGCTA+TGG | + | Chr5:1596957-1596976 | MsG0580024178.01.T01:CDS | 40.0% |
| ! | GATATTGGTGTCTGTCCATT+CGG | - | Chr5:1596820-1596839 | None:intergenic | 40.0% |
| !!! | AAAGGCACTTTTATGGTTGC+AGG | + | Chr5:1597507-1597526 | MsG0580024178.01.T01:CDS | 40.0% |
| AAACCGACAACGGTTCTCAA+GGG | - | Chr5:1597244-1597263 | None:intergenic | 45.0% | |
| AAGTCCCAATTCGTTAGGGT+TGG | - | Chr5:1597364-1597383 | None:intergenic | 45.0% | |
| AGACTCCAACCCTAACGAAT+TGG | + | Chr5:1597356-1597375 | MsG0580024178.01.T01:CDS | 45.0% | |
| AGCATGAACAGCATCCACAA+TGG | - | Chr5:1596625-1596644 | None:intergenic | 45.0% | |
| CAAAATTCACACCACCAAGG+CGG | + | Chr5:1596893-1596912 | MsG0580024178.01.T01:CDS | 45.0% | |
| CCAATGAGAAAGGCCTTCAA+AGG | + | Chr5:1597489-1597508 | MsG0580024178.01.T01:CDS | 45.0% | |
| CTAACTGTGGTGCAAATTGC+AGG | + | Chr5:1597123-1597142 | MsG0580024178.01.T01:intron | 45.0% | |
| CTTCCAAAGCAAACCGACAA+CGG | - | Chr5:1597254-1597273 | None:intergenic | 45.0% | |
| CTTCTCATAACCGAAGCTAC+CGG | + | Chr5:1596525-1596544 | MsG0580024178.01.T01:CDS | 45.0% | |
| GACTCCAACCCTAACGAATT+GGG | + | Chr5:1597357-1597376 | MsG0580024178.01.T01:CDS | 45.0% | |
| GCATGAACAGCATCCACAAT+GGG | - | Chr5:1596624-1596643 | None:intergenic | 45.0% | |
| GCTAGAAATGCTATGGAAGC+TGG | + | Chr5:1596964-1596983 | MsG0580024178.01.T01:CDS | 45.0% | |
| GTGGATGCTGTTCATGCTAA+AGG | + | Chr5:1596627-1596646 | MsG0580024178.01.T01:CDS | 45.0% | |
| TAGAGGATAGCATGAGGTTG+TGG | - | Chr5:1596471-1596490 | None:intergenic | 45.0% | |
| TGATGGGGTTGAAATCCATG+GGG | + | Chr5:1597149-1597168 | MsG0580024178.01.T01:CDS | 45.0% | |
| ! | AGGGCAGACCTTGTTGTATA+TGG | + | Chr5:1597573-1597592 | MsG0580024178.01.T01:CDS | 45.0% |
| ! | CCTTTGAAGGCCTTTCTCAT+TGG | - | Chr5:1597492-1597511 | None:intergenic | 45.0% |
| ! | GTCTGCCCTGTTTTCAACTA+TGG | - | Chr5:1597562-1597581 | None:intergenic | 45.0% |
| !! | TGGCATTGATCCCATCATGT+CGG | - | Chr5:1597542-1597561 | None:intergenic | 45.0% |
| !! | TTGTTGCTTCAAAGGGCACT+AGG | + | Chr5:1597077-1597096 | MsG0580024178.01.T01:intron | 45.0% |
| !!! | GGCCTTCAAAGGCACTTTTA+TGG | + | Chr5:1597500-1597519 | MsG0580024178.01.T01:CDS | 45.0% |
| AGGCCTTTCTCATTGGCACA+AGG | - | Chr5:1597485-1597504 | None:intergenic | 50.0% | |
| ATCCAGACACGCCAGGTATA+TGG | + | Chr5:1596571-1596590 | MsG0580024178.01.T01:CDS | 50.0% | |
| CAAACCGACAACGGTTCTCA+AGG | - | Chr5:1597245-1597264 | None:intergenic | 50.0% | |
| CACCCTTGTGCCAATGAGAA+AGG | + | Chr5:1597479-1597498 | MsG0580024178.01.T01:CDS | 50.0% | |
| GAGGTTACGACCGACATGAT+GGG | + | Chr5:1597529-1597548 | MsG0580024178.01.T01:CDS | 50.0% | |
| GATCCCTTGAGAACCGTTGT+CGG | + | Chr5:1597238-1597257 | MsG0580024178.01.T01:CDS | 50.0% | |
| GGCCTTTCTCATTGGCACAA+GGG | - | Chr5:1597484-1597503 | None:intergenic | 50.0% | |
| GTTGAAATCCATGGGGCTCA+TGG | + | Chr5:1597156-1597175 | MsG0580024178.01.T01:CDS | 50.0% | |
| ! | ATGGACTAAAGAGCACGTCG+AGG | + | Chr5:1596590-1596609 | MsG0580024178.01.T01:CDS | 50.0% |
| ! | GGCACTTTTATGGTTGCAGG+AGG | + | Chr5:1597510-1597529 | MsG0580024178.01.T01:CDS | 50.0% |
| ! | TCTCATTGGCACAAGGGTGT+CGG | - | Chr5:1597478-1597497 | None:intergenic | 50.0% |
| ! | TGGACTAAAGAGCACGTCGA+GGG | + | Chr5:1596591-1596610 | MsG0580024178.01.T01:CDS | 50.0% |
| !! | GAACCGTTGTCGGTTTGCTT+TGG | + | Chr5:1597248-1597267 | MsG0580024178.01.T01:CDS | 50.0% |
| CGAGGGTTGGAAACCCATTG+TGG | + | Chr5:1596608-1596627 | MsG0580024178.01.T01:CDS | 55.0% | |
| CGTGTCTGGATACCCTTGAG+CGG | - | Chr5:1596562-1596581 | None:intergenic | 55.0% | |
| GAGAAGACCTCCGTTAGAGC+CGG | - | Chr5:1596511-1596530 | None:intergenic | 55.0% | |
| GGAGGTTACGACCGACATGA+TGG | + | Chr5:1597528-1597547 | MsG0580024178.01.T01:CDS | 55.0% | |
| GTCAGAGACACCGGTAGCTT+CGG | - | Chr5:1596538-1596557 | None:intergenic | 55.0% | |
| GTCCATATACCTGGCGTGTC+TGG | - | Chr5:1596576-1596595 | None:intergenic | 55.0% | |
| GTGTCTCTGACACCGCTCAA+GGG | + | Chr5:1596547-1596566 | MsG0580024178.01.T01:CDS | 55.0% | |
| TCATCTGTCCTTAGCCGCCT+TGG | - | Chr5:1596910-1596929 | None:intergenic | 55.0% | |
| ! | CTAAAGAGCACGTCGAGGGT+TGG | + | Chr5:1596595-1596614 | MsG0580024178.01.T01:CDS | 55.0% |
| ! | TTGAGCGGTGTCAGAGACAC+CGG | - | Chr5:1596547-1596566 | None:intergenic | 55.0% |
| !! | CTCATTGGCACAAGGGTGTC+GGG | - | Chr5:1597477-1597496 | None:intergenic | 55.0% |
| !! | TCATTGGCACAAGGGTGTCG+GGG | - | Chr5:1597476-1597495 | None:intergenic | 55.0% |
| AAGACCTCCGTTAGAGCCGG+TGG | - | Chr5:1596508-1596527 | None:intergenic | 60.0% | |
| GGTGTCTCTGACACCGCTCA+AGG | + | Chr5:1596546-1596565 | MsG0580024178.01.T01:CDS | 60.0% | |
| GTAGGTAGCCATGAGCCCCA+TGG | - | Chr5:1597167-1597186 | None:intergenic | 60.0% | |
| TCACACCACCAAGGCGGCTA+AGG | + | Chr5:1596899-1596918 | MsG0580024178.01.T01:CDS | 60.0% | |
| TCTGTCCTTAGCCGCCTTGG+TGG | - | Chr5:1596907-1596926 | None:intergenic | 60.0% | |
| !! | CAAGGGTATCCAGACACGCC+AGG | + | Chr5:1596564-1596583 | MsG0580024178.01.T01:CDS | 60.0% |
| !! | CAGAGAGCCACCGGCTCTAA+CGG | + | Chr5:1596498-1596517 | MsG0580024178.01.T01:CDS | 60.0% |
| !! | AGAGCCACCGGCTCTAACGG+AGG | + | Chr5:1596501-1596520 | MsG0580024178.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 1596260 | 1598040 | 1596260 | ID=MsG0580024178.01;Name=MsG0580024178.01 |
| Chr5 | mRNA | 1596260 | 1598040 | 1596260 | ID=MsG0580024178.01.T01;Parent=MsG0580024178.01;Name=MsG0580024178.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0.66|0.75|1|1|1|4|312|371 |
| Chr5 | exon | 1596260 | 1596336 | 1596260 | ID=MsG0580024178.01.T01:exon:23469;Parent=MsG0580024178.01.T01 |
| Chr5 | exon | 1596422 | 1596699 | 1596422 | ID=MsG0580024178.01.T01:exon:23470;Parent=MsG0580024178.01.T01 |
| Chr5 | exon | 1596809 | 1596985 | 1596809 | ID=MsG0580024178.01.T01:exon:23471;Parent=MsG0580024178.01.T01 |
| Chr5 | exon | 1597145 | 1598040 | 1597145 | ID=MsG0580024178.01.T01:exon:23472;Parent=MsG0580024178.01.T01 |
| Chr5 | CDS | 1596260 | 1596336 | 1596260 | ID=MsG0580024178.01.T01:cds;Parent=MsG0580024178.01.T01 |
| Chr5 | CDS | 1596422 | 1596699 | 1596422 | ID=MsG0580024178.01.T01:cds;Parent=MsG0580024178.01.T01 |
| Chr5 | CDS | 1596809 | 1596985 | 1596809 | ID=MsG0580024178.01.T01:cds;Parent=MsG0580024178.01.T01 |
| Chr5 | CDS | 1597145 | 1597728 | 1597145 | ID=MsG0580024178.01.T01:cds;Parent=MsG0580024178.01.T01 |
| Chr5 | three_prime_UTR | 1597729 | 1598040 | 1597729 | ID=MsG0580024178.01.T01:three_prime_utr;Parent=MsG0580024178.01.T01 |
| Gene Sequence |
| Protein sequence |
