Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012400.01.T01 | XP_024639103.1 | 91.877 | 357 | 29 | 0 | 7 | 363 | 3 | 359 | 0 | 692 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012400.01.T01 | B9FSC8 | 74.302 | 358 | 86 | 1 | 11 | 362 | 6 | 363 | 0 | 577 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012400.01.T01 | G7K3R3 | 91.597 | 357 | 30 | 0 | 7 | 363 | 3 | 359 | 0.0 | 690 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048312.01 | MsG0380012400.01 | 0.806203 | 9.219506e-50 | 4.974451e-47 |
| MsG0180000019.01 | MsG0380012400.01 | 0.812850 | 3.445224e-51 | 2.214293e-48 |
| MsG0180002274.01 | MsG0380012400.01 | 0.806846 | 6.744782e-50 | 3.699574e-47 |
| MsG0180003830.01 | MsG0380012400.01 | 0.803693 | 3.086853e-49 | 1.561400e-46 |
| MsG0180004562.01 | MsG0380012400.01 | 0.807244 | 5.556884e-50 | 3.079623e-47 |
| MsG0180004941.01 | MsG0380012400.01 | 0.870628 | 1.263585e-66 | 4.948868e-63 |
| MsG0180005328.01 | MsG0380012400.01 | 0.834171 | 3.497553e-56 | 4.116895e-53 |
| MsG0280011165.01 | MsG0380012400.01 | 0.801624 | 8.247921e-49 | 3.957240e-46 |
| MsG0280011193.01 | MsG0380012400.01 | 0.801554 | 8.522915e-49 | 4.082140e-46 |
| MsG0280011203.01 | MsG0380012400.01 | 0.818720 | 1.691948e-52 | 1.276345e-49 |
| MsG0380011613.01 | MsG0380012400.01 | 0.815512 | 8.902847e-52 | 6.150713e-49 |
| MsG0380012400.01 | MsG0380013300.01 | 0.812831 | 3.478236e-51 | 2.234345e-48 |
| MsG0380012400.01 | MsG0380014802.01 | 0.806055 | 9.903254e-50 | 5.323156e-47 |
| MsG0380012400.01 | MsG0380015010.01 | 0.813654 | 2.294818e-51 | 1.507433e-48 |
| MsG0380012400.01 | MsG0380016359.01 | 0.804319 | 2.287284e-49 | 1.175704e-46 |
| MsG0380012400.01 | MsG0380016360.01 | 0.845032 | 5.230893e-59 | 8.604798e-56 |
| MsG0380012400.01 | MsG0380016839.01 | 0.802898 | 4.508485e-49 | 2.234570e-46 |
| MsG0380012400.01 | MsG0380017247.01 | 0.819375 | 1.200242e-52 | 9.219305e-50 |
| MsG0380012400.01 | MsG0480022655.01 | 0.813911 | 2.014134e-51 | 1.332234e-48 |
| MsG0380012400.01 | MsG0480023107.01 | 0.800357 | 1.497196e-48 | 6.957145e-46 |
| MsG0380012400.01 | MsG0480023497.01 | 0.800540 | 1.373983e-48 | 6.414035e-46 |
| MsG0380012400.01 | MsG0580028999.01 | 0.820576 | 6.377549e-53 | 5.065323e-50 |
| MsG0380012400.01 | MsG0580030133.01 | 0.811517 | 6.731082e-51 | 4.175361e-48 |
| MsG0380012400.01 | MsG0680031240.01 | 0.812337 | 4.460038e-51 | 2.828247e-48 |
| MsG0380012400.01 | MsG0780036661.01 | 0.813454 | 2.539329e-51 | 1.659107e-48 |
| MsG0380012400.01 | MsG0780038939.01 | 0.807649 | 4.559031e-50 | 2.553181e-47 |
| MsG0380012400.01 | MsG0780039978.01 | 0.826295 | 2.933742e-54 | 2.740121e-51 |
| MsG0380012400.01 | MsG0780040806.01 | 0.800308 | 1.531660e-48 | 7.108781e-46 |
| MsG0380012400.01 | MsG0780041316.01 | 0.802558 | 5.299670e-49 | 2.603879e-46 |
| MsG0380012400.01 | MsG0780041556.01 | 0.800063 | 1.718279e-48 | 7.924989e-46 |
| MsG0380012400.01 | MsG0880045272.01 | 0.832176 | 1.097299e-55 | 1.216973e-52 |
| MsG0380012400.01 | MsG0880045441.01 | 0.807084 | 6.007827e-50 | 3.315482e-47 |
| MsG0380012400.01 | MsG0880046996.01 | 0.816543 | 5.238183e-52 | 3.722222e-49 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0380012400.01 | MsG0580024172.01 | PPI |
| MsG0380012400.01 | MsG0880043483.01 | PPI |
| MsG0380012400.01 | MsG0580024179.01 | PPI |
| MsG0380012400.01 | MsG0580024171.01 | PPI |
| MsG0380012400.01 | MsG0580024277.01 | PPI |
| MsG0380012400.01 | MsG0880047354.01 | PPI |
| MsG0380012400.01 | MsG0580024176.01 | PPI |
| MsG0380012400.01 | MsG0580024178.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012400.01.T01 | MTR_5g006670 | 91.597 | 357 | 30 | 0 | 7 | 363 | 3 | 359 | 0.0 | 690 |
| MsG0380012400.01.T01 | MTR_5g006710 | 89.807 | 363 | 37 | 0 | 1 | 363 | 1 | 363 | 0.0 | 689 |
| MsG0380012400.01.T01 | MTR_5g006780 | 84.636 | 371 | 49 | 3 | 1 | 363 | 1 | 371 | 0.0 | 647 |
| MsG0380012400.01.T01 | MTR_5g006800 | 82.114 | 369 | 60 | 1 | 1 | 363 | 1 | 369 | 0.0 | 637 |
| MsG0380012400.01.T01 | MTR_5g006750 | 79.515 | 371 | 68 | 2 | 1 | 363 | 1 | 371 | 0.0 | 619 |
| MsG0380012400.01.T01 | MTR_5g006740 | 80.716 | 363 | 64 | 1 | 7 | 363 | 3 | 365 | 0.0 | 618 |
| MsG0380012400.01.T01 | MTR_5g008040 | 77.989 | 368 | 75 | 1 | 1 | 362 | 3 | 370 | 0.0 | 609 |
| MsG0380012400.01.T01 | MTR_5g006740 | 76.584 | 363 | 62 | 3 | 7 | 363 | 3 | 348 | 0.0 | 572 |
| MsG0380012400.01.T01 | MTR_3g115600 | 68.767 | 365 | 110 | 2 | 1 | 363 | 1 | 363 | 0.0 | 537 |
| MsG0380012400.01.T01 | MTR_5g006720 | 71.467 | 375 | 63 | 3 | 6 | 363 | 5 | 352 | 0.0 | 536 |
| MsG0380012400.01.T01 | MTR_4g125470 | 53.784 | 370 | 152 | 3 | 12 | 362 | 19 | 388 | 3.09e-144 | 414 |
| MsG0380012400.01.T01 | MTR_5g006730 | 78.448 | 116 | 25 | 0 | 1 | 116 | 1 | 116 | 7.48e-63 | 197 |
| MsG0380012400.01.T01 | MTR_3g096570 | 77.465 | 71 | 16 | 0 | 169 | 239 | 8 | 78 | 1.39e-31 | 120 |
| MsG0380012400.01.T01 | MTR_3g096562 | 75.000 | 72 | 18 | 0 | 159 | 230 | 162 | 233 | 1.05e-29 | 118 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012400.01.T01 | AT1G76690 | 72.358 | 369 | 96 | 1 | 1 | 363 | 3 | 371 | 0.0 | 575 |
| MsG0380012400.01.T01 | AT1G76680 | 72.358 | 369 | 96 | 2 | 1 | 363 | 1 | 369 | 0.0 | 574 |
| MsG0380012400.01.T01 | AT1G76680 | 67.766 | 394 | 96 | 3 | 1 | 363 | 1 | 394 | 0.0 | 561 |
| MsG0380012400.01.T01 | AT1G09400 | 69.782 | 321 | 97 | 0 | 21 | 341 | 4 | 324 | 9.39e-180 | 501 |
| MsG0380012400.01.T01 | AT1G09400 | 70.455 | 264 | 78 | 0 | 78 | 341 | 2 | 265 | 3.74e-146 | 414 |
| MsG0380012400.01.T01 | AT2G06050 | 51.429 | 385 | 164 | 3 | 1 | 362 | 1 | 385 | 7.23e-141 | 405 |
| MsG0380012400.01.T01 | AT2G06050 | 51.429 | 385 | 164 | 3 | 1 | 362 | 1 | 385 | 7.23e-141 | 405 |
| MsG0380012400.01.T01 | AT2G06050 | 51.429 | 385 | 164 | 3 | 1 | 362 | 1 | 385 | 7.23e-141 | 405 |
| MsG0380012400.01.T01 | AT1G17990 | 69.380 | 258 | 76 | 2 | 5 | 260 | 2 | 258 | 8.87e-137 | 390 |
| MsG0380012400.01.T01 | AT1G18020 | 69.380 | 258 | 76 | 2 | 5 | 260 | 2 | 258 | 8.87e-137 | 390 |
| MsG0380012400.01.T01 | AT1G17990 | 66.279 | 258 | 76 | 3 | 5 | 260 | 2 | 250 | 4.50e-128 | 368 |
Find 105 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACATTAATTTGATTTAAT+TGG | 0.198344 | 3:+16008696 | MsG0380012400.01.T01:five_prime_UTR |
| GCAAACCTCTTTGGCAAATC+TGG | 0.210347 | 3:-16010314 | None:intergenic |
| CTCCTCTTAACAAGTATAAT+AGG | 0.228308 | 3:+16010345 | MsG0380012400.01.T01:CDS |
| AGGGCAGATCTTGTAGTTTA+TGG | 0.251067 | 3:+16010272 | MsG0380012400.01.T01:CDS |
| CTGAAGTCATTGACAATATC+AGG | 0.283543 | 3:-16009635 | None:intergenic |
| TATCAACCACAAAGCTTATA+TGG | 0.288151 | 3:-16010636 | None:intergenic |
| TTTAATTGGTGGTATCAAAA+TGG | 0.293740 | 3:+16008710 | MsG0380012400.01.T01:exon |
| GCATCTATATTTATAGTATA+TGG | 0.312122 | 3:-16008613 | None:intergenic |
| TAGTCTAATTCCAACTTTAT+CGG | 0.320112 | 3:-16010003 | None:intergenic |
| ATCCAGACAGCCCAGGTATA+TGG | 0.329383 | 3:+16009047 | MsG0380012400.01.T01:CDS |
| GCATTAAGTGCAAACCTCTT+TGG | 0.332483 | 3:-16010323 | None:intergenic |
| CAATTTGAGAGGGAGTTGTT+AGG | 0.341045 | 3:-16008638 | None:intergenic |
| TATAAGAAGACCACCTTTAG+AGG | 0.341560 | 3:-16008987 | None:intergenic |
| GGCTTTCAATGGCACTTTCA+TGG | 0.346532 | 3:+16010199 | MsG0380012400.01.T01:CDS |
| CTTATATGGTATAAAATATC+AGG | 0.352222 | 3:-16010622 | None:intergenic |
| AAATGCATTGGGACTTCATA+TGG | 0.358879 | 3:+16010067 | MsG0380012400.01.T01:CDS |
| CTCATTGGCACAAGGCTGTA+AGG | 0.367432 | 3:-16010173 | None:intergenic |
| GAATCGTTGTCGATTTCCTT+TGG | 0.368620 | 3:+16009947 | MsG0380012400.01.T01:CDS |
| TCCCTATTATACTTGTTAAG+AGG | 0.369675 | 3:-16010347 | None:intergenic |
| TCATCTGTCCCAAGCCTTCT+CGG | 0.370065 | 3:-16009608 | None:intergenic |
| CTTCTTACACCTTACAAGAT+AGG | 0.370674 | 3:+16008762 | MsG0380012400.01.T01:CDS |
| CAATGGCACTTTCATGGTTG+CGG | 0.371044 | 3:+16010205 | MsG0380012400.01.T01:CDS |
| TTGAATTTGCCTATCTTGTA+AGG | 0.371737 | 3:-16008771 | None:intergenic |
| GTCCATATACCTGGGCTGTC+TGG | 0.372045 | 3:-16009049 | None:intergenic |
| ATATGAAGTCCCAATGCATT+TGG | 0.375541 | 3:-16010065 | None:intergenic |
| TCAATGCTATAGCTGAAAAC+AGG | 0.375838 | 3:+16010252 | MsG0380012400.01.T01:CDS |
| ATATAAGCTTTGTGGTTGAT+AGG | 0.378658 | 3:+16010638 | MsG0380012400.01.T01:three_prime_UTR |
| TGATCCGGTTGTAGGTTATA+CGG | 0.380846 | 3:+16010385 | MsG0380012400.01.T01:CDS |
| TACATTTCTGATCCGGTTGT+AGG | 0.387959 | 3:+16010377 | MsG0380012400.01.T01:CDS |
| AATGGCACTTTCATGGTTGC+GGG | 0.393208 | 3:+16010206 | MsG0380012400.01.T01:CDS |
| TTTATACCATATAAGCTTTG+TGG | 0.396404 | 3:+16010630 | MsG0380012400.01.T01:three_prime_UTR |
| TTCTCGCCACCGAGAAGGCT+TGG | 0.405740 | 3:+16009599 | MsG0380012400.01.T01:CDS |
| TCCTCTTAACAAGTATAATA+GGG | 0.406224 | 3:+16010346 | MsG0380012400.01.T01:CDS |
| AAAGAATATTGTACTTATTG+AGG | 0.409340 | 3:-16010097 | None:intergenic |
| CCATTGAAAGCCTTTCTCAT+TGG | 0.410004 | 3:-16010188 | None:intergenic |
| AGGACCTTTGAGAGTAATAG+AGG | 0.421466 | 3:-16008967 | None:intergenic |
| GCATGAACAGCATCTACAAC+AGG | 0.426710 | 3:-16009097 | None:intergenic |
| AACATTCTACATTTCTGATC+CGG | 0.427062 | 3:+16010370 | MsG0380012400.01.T01:CDS |
| CAGCCTTGTGCCAATGAGAA+AGG | 0.431994 | 3:+16010178 | MsG0380012400.01.T01:CDS |
| GAAGCAGTTGTAAATGAGAT+AGG | 0.432088 | 3:+16009978 | MsG0380012400.01.T01:CDS |
| CATTAATTTGATTTAATTGG+TGG | 0.432365 | 3:+16008699 | MsG0380012400.01.T01:five_prime_UTR |
| GCAAATTCAATCTCTCTCAT+AGG | 0.433596 | 3:+16008784 | MsG0380012400.01.T01:CDS |
| CTTTCTGCATATTCAGCAAA+TGG | 0.438653 | 3:-16010029 | None:intergenic |
| GATATCGGTGCTTGTCCATT+CGG | 0.438814 | 3:-16009536 | None:intergenic |
| GACTCTAATCCAAATGCATT+GGG | 0.453689 | 3:+16010056 | MsG0380012400.01.T01:CDS |
| AATTTGAGAGGGAGTTGTTA+GGG | 0.454555 | 3:-16008637 | None:intergenic |
| TGCTCTTTAGTCCATATACC+TGG | 0.459561 | 3:-16009058 | None:intergenic |
| GAAGGTTCCACTTCCAACCT+TGG | 0.461724 | 3:-16010452 | None:intergenic |
| AAGAATATTGTACTTATTGA+GGG | 0.462924 | 3:-16010096 | None:intergenic |
| GAGATAGGAGCCGATAAAGT+TGG | 0.478784 | 3:+16009993 | MsG0380012400.01.T01:CDS |
| GTCGGATACACCAGTAGCTT+CGG | 0.479603 | 3:-16009011 | None:intergenic |
| CTCACTAGAATAAGATCCTA+TGG | 0.486036 | 3:+16008920 | MsG0380012400.01.T01:CDS |
| TCTCGCCACCGAGAAGGCTT+GGG | 0.486835 | 3:+16009600 | MsG0380012400.01.T01:CDS |
| CGAATCCAGATTTGCCAAAG+AGG | 0.491902 | 3:+16010309 | MsG0380012400.01.T01:CDS |
| ATTGCTTGTGAGTGACTTGT+CGG | 0.493116 | 3:-16009564 | None:intergenic |
| CTTCTTATAGCCGAAGCTAC+TGG | 0.505350 | 3:+16009001 | MsG0380012400.01.T01:CDS |
| AGACTCTAATCCAAATGCAT+TGG | 0.510548 | 3:+16010055 | MsG0380012400.01.T01:CDS |
| TAAGGTGTAAGAAGAGGAAT+GGG | 0.514396 | 3:-16008753 | None:intergenic |
| TTGTCCTCTATTACTCTCAA+AGG | 0.525613 | 3:+16008963 | MsG0380012400.01.T01:CDS |
| TCATTGGCACAAGGCTGTAA+GGG | 0.525679 | 3:-16010172 | None:intergenic |
| GCAAGAAATGCTATTGAAGC+TGG | 0.528089 | 3:+16009665 | MsG0380012400.01.T01:CDS |
| GTAAGGTGTAAGAAGAGGAA+TGG | 0.528759 | 3:-16008754 | None:intergenic |
| GTAGCATCCAAGGTTGGAAG+TGG | 0.529512 | 3:+16010445 | MsG0380012400.01.T01:three_prime_UTR |
| TACTCTCAAAGGTCCTCTAA+AGG | 0.530036 | 3:+16008974 | MsG0380012400.01.T01:CDS |
| ATGCTGTACTGTAGCATCCA+AGG | 0.530490 | 3:+16010435 | MsG0380012400.01.T01:three_prime_UTR |
| CTTTCATGAATTGTTCAAGT+AGG | 0.530510 | 3:-16009881 | None:intergenic |
| TATATGCAATTCAATTTGAG+AGG | 0.532969 | 3:-16008649 | None:intergenic |
| GACTTGTCGGTAGAAGATAT+CGG | 0.533594 | 3:-16009551 | None:intergenic |
| ATCGAAATCCATGGAGCTCA+TGG | 0.534699 | 3:+16009855 | MsG0380012400.01.T01:CDS |
| TTCATACTAGCTTATCGGCT+AGG | 0.542451 | 3:+16010567 | MsG0380012400.01.T01:three_prime_UTR |
| GTAGATGCTGTTCATGCTAA+AGG | 0.548123 | 3:+16009103 | MsG0380012400.01.T01:CDS |
| TGGATACCCTTGAGCTGTGT+CGG | 0.553060 | 3:-16009029 | None:intergenic |
| CCAATGAGAAAGGCTTTCAA+TGG | 0.561406 | 3:+16010188 | MsG0380012400.01.T01:CDS |
| AAGCCTTTCTCATTGGCACA+AGG | 0.563142 | 3:-16010181 | None:intergenic |
| TAGAGGACAACATGTGGTTG+AGG | 0.573654 | 3:-16008950 | None:intergenic |
| GGTGTATCCGACACAGCTCA+AGG | 0.574972 | 3:+16009022 | MsG0380012400.01.T01:CDS |
| TAGTCCGTATAACCTACAAC+CGG | 0.576852 | 3:-16010389 | None:intergenic |
| CAATATTCTTTACTGTCACA+TGG | 0.576936 | 3:+16010109 | MsG0380012400.01.T01:CDS |
| AGCTTCAATAGCATTTCTTG+CGG | 0.576970 | 3:-16009663 | None:intergenic |
| GCTCTTTAGTCCATATACCT+GGG | 0.578858 | 3:-16009057 | None:intergenic |
| TTTGATGGTATCGAAATCCA+TGG | 0.580196 | 3:+16009846 | MsG0380012400.01.T01:CDS |
| CAAGGGTATCCAGACAGCCC+AGG | 0.584387 | 3:+16009040 | MsG0380012400.01.T01:CDS |
| GGCACTTTCATGGTTGCGGG+AGG | 0.587792 | 3:+16010209 | MsG0380012400.01.T01:CDS |
| AATGACAGAACAGATGAATA+CGG | 0.588235 | 3:+16009912 | MsG0380012400.01.T01:CDS |
| GAAATCGACAACGATTCTCA+AGG | 0.593087 | 3:-16009941 | None:intergenic |
| GTAGGTAGCCATGAGCTCCA+TGG | 0.595976 | 3:-16009863 | None:intergenic |
| GGAGGCTATGACAGACAAGA+CGG | 0.604358 | 3:+16010227 | MsG0380012400.01.T01:CDS |
| ATATGCAATTCAATTTGAGA+GGG | 0.612163 | 3:-16008648 | None:intergenic |
| TAGGATCTTATTCTAGTGAG+TGG | 0.614903 | 3:-16008917 | None:intergenic |
| GAGGCTATGACAGACAAGAC+GGG | 0.616560 | 3:+16010228 | MsG0380012400.01.T01:CDS |
| ATCTTGTAAGGTGTAAGAAG+AGG | 0.617684 | 3:-16008759 | None:intergenic |
| CAATGCTATAGCTGAAAACA+GGG | 0.617928 | 3:+16010253 | MsG0380012400.01.T01:CDS |
| TGGTTGAGGAACATTGCCAT+AGG | 0.622865 | 3:-16008936 | None:intergenic |
| ACTGCTTCAACAATTTCCAA+AGG | 0.625347 | 3:-16009963 | None:intergenic |
| AAATCGACAACGATTCTCAA+GGG | 0.633730 | 3:-16009940 | None:intergenic |
| TTTGCTGAATATGCAGAAAG+CGG | 0.633878 | 3:+16010032 | MsG0380012400.01.T01:CDS |
| TCTCAAAGGTCCTCTAAAGG+TGG | 0.638482 | 3:+16008977 | MsG0380012400.01.T01:CDS |
| CTAAAGAGCAAGTTGAGGCG+TGG | 0.641191 | 3:+16009071 | MsG0380012400.01.T01:CDS |
| GTGTATCCGACACAGCTCAA+GGG | 0.660265 | 3:+16009023 | MsG0380012400.01.T01:CDS |
| TGTACTGTAGCATCCAAGGT+TGG | 0.667688 | 3:+16010439 | MsG0380012400.01.T01:three_prime_UTR |
| TATTCTTTACTGTCACATGG+TGG | 0.684787 | 3:+16010112 | MsG0380012400.01.T01:CDS |
| ATGGACTAAAGAGCAAGTTG+AGG | 0.687634 | 3:+16009066 | MsG0380012400.01.T01:CDS |
| GAGTAATAGAGGACAACATG+TGG | 0.696474 | 3:-16008956 | None:intergenic |
| GACAGAACAGATGAATACGG+TGG | 0.702185 | 3:+16009915 | MsG0380012400.01.T01:CDS |
| TCTGTCCCAAGCCTTCTCGG+TGG | 0.708391 | 3:-16009605 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAACTAATTAAATTTGA+AGG | - | Chr3:16010473-16010492 | None:intergenic | 10.0% |
| !! | GTAATAATACTAAAAAATAA+CGG | - | Chr3:16009406-16009425 | None:intergenic | 10.0% |
| !! | AATAATCTTCAAATTATATG+AGG | - | Chr3:16009197-16009216 | None:intergenic | 15.0% |
| !!! | AATTTGAAGATTATTTTAGT+TGG | + | Chr3:16009202-16009221 | MsG0380012400.01.T01:intron | 15.0% |
| !!! | ATTGAAATTGAAAGTATAAT+AGG | - | Chr3:16008812-16008831 | None:intergenic | 15.0% |
| !!! | TCACATTAATTTGATTTAAT+TGG | + | Chr3:16008696-16008715 | MsG0380012400.01.T01:five_prime_UTR | 15.0% |
| !! | AAAGAATATTGTACTTATTG+AGG | - | Chr3:16010100-16010119 | None:intergenic | 20.0% |
| !! | AAGAATATTGTACTTATTGA+GGG | - | Chr3:16010099-16010118 | None:intergenic | 20.0% |
| !! | AGTATTATTACTACTACTAA+GGG | + | Chr3:16009415-16009434 | MsG0380012400.01.T01:intron | 20.0% |
| !! | CTTATATGGTATAAAATATC+AGG | - | Chr3:16010625-16010644 | None:intergenic | 20.0% |
| !! | GCATCTATATTTATAGTATA+TGG | - | Chr3:16008616-16008635 | None:intergenic | 20.0% |
| !! | TAGTATTATTACTACTACTA+AGG | + | Chr3:16009414-16009433 | MsG0380012400.01.T01:intron | 20.0% |
| !!! | ATACTAAAAAATAACGGATT+TGG | - | Chr3:16009400-16009419 | None:intergenic | 20.0% |
| !!! | CATTAATTTGATTTAATTGG+TGG | + | Chr3:16008699-16008718 | MsG0380012400.01.T01:five_prime_UTR | 20.0% |
| !!! | TACTAAAAAATAACGGATTT+GGG | - | Chr3:16009399-16009418 | None:intergenic | 20.0% |
| !!! | TTTTATTCATACTAGCTTAT+CGG | + | Chr3:16010562-16010581 | MsG0380012400.01.T01:three_prime_UTR | 20.0% |
| !!! | TTTTTTCTTCATTCAAGAAA+TGG | - | Chr3:16010416-16010435 | None:intergenic | 20.0% |
| ! | AAAACCTGTTGAGAATAAAA+TGG | - | Chr3:16009513-16009532 | None:intergenic | 25.0% |
| ! | ACTAAAAAAACAAATGTGCA+AGG | - | Chr3:16010498-16010517 | None:intergenic | 25.0% |
| ! | ATATGCAATTCAATTTGAGA+GGG | - | Chr3:16008651-16008670 | None:intergenic | 25.0% |
| ! | GTATTATTACTACTACTAAG+GGG | + | Chr3:16009416-16009435 | MsG0380012400.01.T01:intron | 25.0% |
| ! | TAGTCTAATTCCAACTTTAT+CGG | - | Chr3:16010006-16010025 | None:intergenic | 25.0% |
| ! | TATATGCAATTCAATTTGAG+AGG | - | Chr3:16008652-16008671 | None:intergenic | 25.0% |
| ! | TCCTCTTAACAAGTATAATA+GGG | + | Chr3:16010346-16010365 | MsG0380012400.01.T01:CDS | 25.0% |
| ! | TTTATACCATATAAGCTTTG+TGG | + | Chr3:16010630-16010649 | MsG0380012400.01.T01:three_prime_UTR | 25.0% |
| !! | TTGTTATTGTTGGATTTAGA+TGG | + | Chr3:16009228-16009247 | MsG0380012400.01.T01:intron | 25.0% |
| !! | TTTAATTGGTGGTATCAAAA+TGG | + | Chr3:16008710-16008729 | MsG0380012400.01.T01:exon | 25.0% |
| !!! | AGGACTATTTGTTGATTTAA+AGG | + | Chr3:16009767-16009786 | MsG0380012400.01.T01:intron | 25.0% |
| !!! | GGACTATTTGTTGATTTAAA+GGG | + | Chr3:16009768-16009787 | MsG0380012400.01.T01:intron | 25.0% |
| !!! | TACTGATATTTTTCAGAAAC+AGG | + | Chr3:16009747-16009766 | MsG0380012400.01.T01:intron | 25.0% |
| !!! | TTGAAGATTATTTTAGTTGG+AGG | + | Chr3:16009205-16009224 | MsG0380012400.01.T01:intron | 25.0% |
| AAATTCTTGAGCTTGAAATC+TGG | + | Chr3:16009329-16009348 | MsG0380012400.01.T01:intron | 30.0% | |
| AACATTCTACATTTCTGATC+CGG | + | Chr3:16010370-16010389 | MsG0380012400.01.T01:CDS | 30.0% | |
| AATGACAGAACAGATGAATA+CGG | + | Chr3:16009912-16009931 | MsG0380012400.01.T01:CDS | 30.0% | |
| CAATATTCTTTACTGTCACA+TGG | + | Chr3:16010109-16010128 | MsG0380012400.01.T01:CDS | 30.0% | |
| CTCCTCTTAACAAGTATAAT+AGG | + | Chr3:16010345-16010364 | MsG0380012400.01.T01:CDS | 30.0% | |
| CTTTCATGAATTGTTCAAGT+AGG | - | Chr3:16009884-16009903 | None:intergenic | 30.0% | |
| TATCAACCACAAAGCTTATA+TGG | - | Chr3:16010639-16010658 | None:intergenic | 30.0% | |
| TATTGAAGCTGGTAAATTTG+TGG | + | Chr3:16009676-16009695 | MsG0380012400.01.T01:intron | 30.0% | |
| TTGAATTTGCCTATCTTGTA+AGG | - | Chr3:16008774-16008793 | None:intergenic | 30.0% | |
| ! | ATATAAGCTTTGTGGTTGAT+AGG | + | Chr3:16010638-16010657 | MsG0380012400.01.T01:three_prime_UTR | 30.0% |
| ! | CTACATTCTTTTGTCAGATT+TGG | + | Chr3:16009128-16009147 | MsG0380012400.01.T01:CDS | 30.0% |
| ! | GATTGAAGCACATTTCATTT+TGG | - | Chr3:16009718-16009737 | None:intergenic | 30.0% |
| ! | GTTGGAAGATTTTCAAATTC+AGG | + | Chr3:16009154-16009173 | MsG0380012400.01.T01:CDS | 30.0% |
| ! | TCCCTATTATACTTGTTAAG+AGG | - | Chr3:16010350-16010369 | None:intergenic | 30.0% |
| !! | TCAGAAGCTGATTTTATTCT+TGG | - | Chr3:16010140-16010159 | None:intergenic | 30.0% |
| AAATCGACAACGATTCTCAA+GGG | - | Chr3:16009943-16009962 | None:intergenic | 35.0% | |
| AAATGCATTGGGACTTCATA+TGG | + | Chr3:16010067-16010086 | MsG0380012400.01.T01:CDS | 35.0% | |
| AATTTGAGAGGGAGTTGTTA+GGG | - | Chr3:16008640-16008659 | None:intergenic | 35.0% | |
| ACTGCTTCAACAATTTCCAA+AGG | - | Chr3:16009966-16009985 | None:intergenic | 35.0% | |
| AGACTCTAATCCAAATGCAT+TGG | + | Chr3:16010055-16010074 | MsG0380012400.01.T01:CDS | 35.0% | |
| AGCTTCAATAGCATTTCTTG+CGG | - | Chr3:16009666-16009685 | None:intergenic | 35.0% | |
| AGTTGTGATCCAATCAATGT+TGG | - | Chr3:16009360-16009379 | None:intergenic | 35.0% | |
| ATATGAAGTCCCAATGCATT+TGG | - | Chr3:16010068-16010087 | None:intergenic | 35.0% | |
| ATCTTGTAAGGTGTAAGAAG+AGG | - | Chr3:16008762-16008781 | None:intergenic | 35.0% | |
| ATTGTTGGATTTAGATGGTG+TGG | + | Chr3:16009233-16009252 | MsG0380012400.01.T01:intron | 35.0% | |
| CAATGCTATAGCTGAAAACA+GGG | + | Chr3:16010253-16010272 | MsG0380012400.01.T01:CDS | 35.0% | |
| CTCAATTTGATGCAAATTGC+AGG | + | Chr3:16009822-16009841 | MsG0380012400.01.T01:intron | 35.0% | |
| CTCACTAGAATAAGATCCTA+TGG | + | Chr3:16008920-16008939 | MsG0380012400.01.T01:CDS | 35.0% | |
| CTGAAGTCATTGACAATATC+AGG | - | Chr3:16009638-16009657 | None:intergenic | 35.0% | |
| CTTCTTACACCTTACAAGAT+AGG | + | Chr3:16008762-16008781 | MsG0380012400.01.T01:CDS | 35.0% | |
| CTTTCTGCATATTCAGCAAA+TGG | - | Chr3:16010032-16010051 | None:intergenic | 35.0% | |
| GAAGCAGTTGTAAATGAGAT+AGG | + | Chr3:16009978-16009997 | MsG0380012400.01.T01:CDS | 35.0% | |
| GACTCTAATCCAAATGCATT+GGG | + | Chr3:16010056-16010075 | MsG0380012400.01.T01:CDS | 35.0% | |
| GCAAATTCAATCTCTCTCAT+AGG | + | Chr3:16008784-16008803 | MsG0380012400.01.T01:CDS | 35.0% | |
| GGAGGTTAATTAGCAAAACA+AGG | - | Chr3:16008875-16008894 | None:intergenic | 35.0% | |
| TAAGGTGTAAGAAGAGGAAT+GGG | - | Chr3:16008756-16008775 | None:intergenic | 35.0% | |
| TAGGATCTTATTCTAGTGAG+TGG | - | Chr3:16008920-16008939 | None:intergenic | 35.0% | |
| TATAAGAAGACCACCTTTAG+AGG | - | Chr3:16008990-16009009 | None:intergenic | 35.0% | |
| TATTCTTTACTGTCACATGG+TGG | + | Chr3:16010112-16010131 | MsG0380012400.01.T01:CDS | 35.0% | |
| TCAATGCTATAGCTGAAAAC+AGG | + | Chr3:16010252-16010271 | MsG0380012400.01.T01:CDS | 35.0% | |
| TTGTCCTCTATTACTCTCAA+AGG | + | Chr3:16008963-16008982 | MsG0380012400.01.T01:CDS | 35.0% | |
| TTTGCTGAATATGCAGAAAG+CGG | + | Chr3:16010032-16010051 | MsG0380012400.01.T01:CDS | 35.0% | |
| ! | AAAACAACTCTGAAAATGGG+AGG | - | Chr3:16008893-16008912 | None:intergenic | 35.0% |
| ! | GCCAAAACAACTCTGAAAAT+GGG | - | Chr3:16008896-16008915 | None:intergenic | 35.0% |
| ! | GTGTCCATTTTATTCTCAAC+AGG | + | Chr3:16009506-16009525 | MsG0380012400.01.T01:intron | 35.0% |
| ! | TAGTTGGAGGTTGTTATTGT+TGG | + | Chr3:16009218-16009237 | MsG0380012400.01.T01:intron | 35.0% |
| ! | TCCCATTTTCAGAGTTGTTT+TGG | + | Chr3:16008892-16008911 | MsG0380012400.01.T01:intron | 35.0% |
| ! | TGCCAAAACAACTCTGAAAA+TGG | - | Chr3:16008897-16008916 | None:intergenic | 35.0% |
| ! | TTTGATGGTATCGAAATCCA+TGG | + | Chr3:16009846-16009865 | MsG0380012400.01.T01:CDS | 35.0% |
| ! | TTTTGTCAGATTTGGCATGT+TGG | + | Chr3:16009136-16009155 | MsG0380012400.01.T01:CDS | 35.0% |
| !! | ATGCAAATTGCAGGTTTTGA+TGG | + | Chr3:16009831-16009850 | MsG0380012400.01.T01:intron | 35.0% |
| AGGGCAGATCTTGTAGTTTA+TGG | + | Chr3:16010272-16010291 | MsG0380012400.01.T01:CDS | 40.0% | |
| CAATTTGAGAGGGAGTTGTT+AGG | - | Chr3:16008641-16008660 | None:intergenic | 40.0% | |
| CCAATGAGAAAGGCTTTCAA+TGG | + | Chr3:16010188-16010207 | MsG0380012400.01.T01:CDS | 40.0% | |
| CCATTGAAAGCCTTTCTCAT+TGG | - | Chr3:16010191-16010210 | None:intergenic | 40.0% | |
| GAAATCGACAACGATTCTCA+AGG | - | Chr3:16009944-16009963 | None:intergenic | 40.0% | |
| GACTTGTCGGTAGAAGATAT+CGG | - | Chr3:16009554-16009573 | None:intergenic | 40.0% | |
| GAGTAATAGAGGACAACATG+TGG | - | Chr3:16008959-16008978 | None:intergenic | 40.0% | |
| GCAAGAAATGCTATTGAAGC+TGG | + | Chr3:16009665-16009684 | MsG0380012400.01.T01:CDS | 40.0% | |
| GCATTAAGTGCAAACCTCTT+TGG | - | Chr3:16010326-16010345 | None:intergenic | 40.0% | |
| GCTCTTTAGTCCATATACCT+GGG | - | Chr3:16009060-16009079 | None:intergenic | 40.0% | |
| GTAAGGTGTAAGAAGAGGAA+TGG | - | Chr3:16008757-16008776 | None:intergenic | 40.0% | |
| GTAGATGCTGTTCATGCTAA+AGG | + | Chr3:16009103-16009122 | MsG0380012400.01.T01:CDS | 40.0% | |
| GTGATCCAATCAATGTTGGA+CGG | - | Chr3:16009356-16009375 | None:intergenic | 40.0% | |
| TACATTTCTGATCCGGTTGT+AGG | + | Chr3:16010377-16010396 | MsG0380012400.01.T01:CDS | 40.0% | |
| TACTCTCAAAGGTCCTCTAA+AGG | + | Chr3:16008974-16008993 | MsG0380012400.01.T01:CDS | 40.0% | |
| TAGTCCGTATAACCTACAAC+CGG | - | Chr3:16010392-16010411 | None:intergenic | 40.0% | |
| TGATCCGGTTGTAGGTTATA+CGG | + | Chr3:16010385-16010404 | MsG0380012400.01.T01:CDS | 40.0% | |
| TGCTCTTTAGTCCATATACC+TGG | - | Chr3:16009061-16009080 | None:intergenic | 40.0% | |
| ! | AGGACCTTTGAGAGTAATAG+AGG | - | Chr3:16008970-16008989 | None:intergenic | 40.0% |
| ! | ATGGACTAAAGAGCAAGTTG+AGG | + | Chr3:16009066-16009085 | MsG0380012400.01.T01:CDS | 40.0% |
| ! | ATTGCTTGTGAGTGACTTGT+CGG | - | Chr3:16009567-16009586 | None:intergenic | 40.0% |
| ! | TTCATACTAGCTTATCGGCT+AGG | + | Chr3:16010567-16010586 | MsG0380012400.01.T01:three_prime_UTR | 40.0% |
| !! | GAATCGTTGTCGATTTCCTT+TGG | + | Chr3:16009947-16009966 | MsG0380012400.01.T01:CDS | 40.0% |
| AAAAATTCTCGCCACCGAGA+AGG | + | Chr3:16009594-16009613 | MsG0380012400.01.T01:CDS | 45.0% | |
| AAGCCTTTCTCATTGGCACA+AGG | - | Chr3:16010184-16010203 | None:intergenic | 45.0% | |
| AATGGCACTTTCATGGTTGC+GGG | + | Chr3:16010206-16010225 | MsG0380012400.01.T01:CDS | 45.0% | |
| ATCGAAATCCATGGAGCTCA+TGG | + | Chr3:16009855-16009874 | MsG0380012400.01.T01:CDS | 45.0% | |
| ATGCTGTACTGTAGCATCCA+AGG | + | Chr3:16010435-16010454 | MsG0380012400.01.T01:three_prime_UTR | 45.0% | |
| CAATGGCACTTTCATGGTTG+CGG | + | Chr3:16010205-16010224 | MsG0380012400.01.T01:CDS | 45.0% | |
| CGAATCCAGATTTGCCAAAG+AGG | + | Chr3:16010309-16010328 | MsG0380012400.01.T01:CDS | 45.0% | |
| CTTCTTATAGCCGAAGCTAC+TGG | + | Chr3:16009001-16009020 | MsG0380012400.01.T01:CDS | 45.0% | |
| GACAGAACAGATGAATACGG+TGG | + | Chr3:16009915-16009934 | MsG0380012400.01.T01:CDS | 45.0% | |
| GAGATAGGAGCCGATAAAGT+TGG | + | Chr3:16009993-16010012 | MsG0380012400.01.T01:CDS | 45.0% | |
| GCAAACCTCTTTGGCAAATC+TGG | - | Chr3:16010317-16010336 | None:intergenic | 45.0% | |
| GCAGTCAACGACATCAAGAT+CGG | + | Chr3:16009267-16009286 | MsG0380012400.01.T01:intron | 45.0% | |
| GCATGAACAGCATCTACAAC+AGG | - | Chr3:16009100-16009119 | None:intergenic | 45.0% | |
| GGCTTTCAATGGCACTTTCA+TGG | + | Chr3:16010199-16010218 | MsG0380012400.01.T01:CDS | 45.0% | |
| TAGAGGACAACATGTGGTTG+AGG | - | Chr3:16008953-16008972 | None:intergenic | 45.0% | |
| TCATTGGCACAAGGCTGTAA+GGG | - | Chr3:16010175-16010194 | None:intergenic | 45.0% | |
| TGGTTGAGGAACATTGCCAT+AGG | - | Chr3:16008939-16008958 | None:intergenic | 45.0% | |
| TGTACTGTAGCATCCAAGGT+TGG | + | Chr3:16010439-16010458 | MsG0380012400.01.T01:three_prime_UTR | 45.0% | |
| ! | GATATCGGTGCTTGTCCATT+CGG | - | Chr3:16009539-16009558 | None:intergenic | 45.0% |
| ! | TCAACAGGTTTTCAGCCGAA+TGG | + | Chr3:16009521-16009540 | MsG0380012400.01.T01:intron | 45.0% |
| ! | TCTCAAAGGTCCTCTAAAGG+TGG | + | Chr3:16008977-16008996 | MsG0380012400.01.T01:CDS | 45.0% |
| ATCCAGACAGCCCAGGTATA+TGG | + | Chr3:16009047-16009066 | MsG0380012400.01.T01:CDS | 50.0% | |
| CTCATTGGCACAAGGCTGTA+AGG | - | Chr3:16010176-16010195 | None:intergenic | 50.0% | |
| CTGGACCGTCCAACATTGAT+TGG | + | Chr3:16009348-16009367 | MsG0380012400.01.T01:intron | 50.0% | |
| GAAGGTTCCACTTCCAACCT+TGG | - | Chr3:16010455-16010474 | None:intergenic | 50.0% | |
| GAGGCTATGACAGACAAGAC+GGG | + | Chr3:16010228-16010247 | MsG0380012400.01.T01:CDS | 50.0% | |
| GGAGGCTATGACAGACAAGA+CGG | + | Chr3:16010227-16010246 | MsG0380012400.01.T01:CDS | 50.0% | |
| GTAGCATCCAAGGTTGGAAG+TGG | + | Chr3:16010445-16010464 | MsG0380012400.01.T01:three_prime_UTR | 50.0% | |
| GTCGGATACACCAGTAGCTT+CGG | - | Chr3:16009014-16009033 | None:intergenic | 50.0% | |
| GTGTATCCGACACAGCTCAA+GGG | + | Chr3:16009023-16009042 | MsG0380012400.01.T01:CDS | 50.0% | |
| TCATCTGTCCCAAGCCTTCT+CGG | - | Chr3:16009611-16009630 | None:intergenic | 50.0% | |
| TGGATACCCTTGAGCTGTGT+CGG | - | Chr3:16009032-16009051 | None:intergenic | 50.0% | |
| ! | CAGCCTTGTGCCAATGAGAA+AGG | + | Chr3:16010178-16010197 | MsG0380012400.01.T01:CDS | 50.0% |
| ! | CTAAAGAGCAAGTTGAGGCG+TGG | + | Chr3:16009071-16009090 | MsG0380012400.01.T01:CDS | 50.0% |
| GGTGTATCCGACACAGCTCA+AGG | + | Chr3:16009022-16009041 | MsG0380012400.01.T01:CDS | 55.0% | |
| GTAGGTAGCCATGAGCTCCA+TGG | - | Chr3:16009866-16009885 | None:intergenic | 55.0% | |
| GTCCATATACCTGGGCTGTC+TGG | - | Chr3:16009052-16009071 | None:intergenic | 55.0% | |
| GGCACTTTCATGGTTGCGGG+AGG | + | Chr3:16010209-16010228 | MsG0380012400.01.T01:CDS | 60.0% | |
| TCTCGCCACCGAGAAGGCTT+GGG | + | Chr3:16009600-16009619 | MsG0380012400.01.T01:CDS | 60.0% | |
| TCTGTCCCAAGCCTTCTCGG+TGG | - | Chr3:16009608-16009627 | None:intergenic | 60.0% | |
| TTCTCGCCACCGAGAAGGCT+TGG | + | Chr3:16009599-16009618 | MsG0380012400.01.T01:CDS | 60.0% | |
| !! | CAAGGGTATCCAGACAGCCC+AGG | + | Chr3:16009040-16009059 | MsG0380012400.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 16008610 | 16010662 | 16008610 | ID=MsG0380012400.01;Name=MsG0380012400.01 |
| Chr3 | mRNA | 16008610 | 16010662 | 16008610 | ID=MsG0380012400.01.T01;Parent=MsG0380012400.01;Name=MsG0380012400.01.T01;_AED=0.29;_eAED=0.29;_QI=119|1|1|1|1|1|4|235|363 |
| Chr3 | exon | 16008610 | 16008805 | 16008610 | ID=MsG0380012400.01.T01:exon:21696;Parent=MsG0380012400.01.T01 |
| Chr3 | exon | 16008904 | 16009175 | 16008904 | ID=MsG0380012400.01.T01:exon:21697;Parent=MsG0380012400.01.T01 |
| Chr3 | exon | 16009528 | 16009686 | 16009528 | ID=MsG0380012400.01.T01:exon:21698;Parent=MsG0380012400.01.T01 |
| Chr3 | exon | 16009844 | 16010662 | 16009844 | ID=MsG0380012400.01.T01:exon:21699;Parent=MsG0380012400.01.T01 |
| Chr3 | five_prime_UTR | 16008610 | 16008728 | 16008610 | ID=MsG0380012400.01.T01:five_prime_utr;Parent=MsG0380012400.01.T01 |
| Chr3 | CDS | 16008729 | 16008805 | 16008729 | ID=MsG0380012400.01.T01:cds;Parent=MsG0380012400.01.T01 |
| Chr3 | CDS | 16008904 | 16009175 | 16008904 | ID=MsG0380012400.01.T01:cds;Parent=MsG0380012400.01.T01 |
| Chr3 | CDS | 16009528 | 16009686 | 16009528 | ID=MsG0380012400.01.T01:cds;Parent=MsG0380012400.01.T01 |
| Chr3 | CDS | 16009844 | 16010427 | 16009844 | ID=MsG0380012400.01.T01:cds;Parent=MsG0380012400.01.T01 |
| Chr3 | three_prime_UTR | 16010428 | 16010662 | 16010428 | ID=MsG0380012400.01.T01:three_prime_utr;Parent=MsG0380012400.01.T01 |
| Gene Sequence |
| Protein sequence |
