AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580024464.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024464.01.T01 MTR_5g011520 96.923 325 3 3 1 318 1 325 0.0 619
MsG0580024464.01.T01 MTR_8g036060 59.036 332 83 12 1 311 1 300 2.52e-88 267
MsG0580024464.01.T01 MTR_5g091630 62.727 220 69 2 41 259 1 208 3.22e-78 239
MsG0580024464.01.T01 MTR_1g073860 63.402 194 62 2 91 275 87 280 1.07e-68 217
MsG0580024464.01.T01 MTR_1g079810 68.235 170 54 0 92 261 68 237 5.57e-68 215
MsG0580024464.01.T01 MTR_1g044155 73.885 157 41 0 91 247 119 275 4.51e-67 214
MsG0580024464.01.T01 MTR_7g080980 68.874 151 47 0 107 257 66 216 2.32e-65 207
MsG0580024464.01.T01 MTR_3g068035 52.679 224 76 3 108 311 89 302 2.53e-65 208
MsG0580024464.01.T01 MTR_4g098450 61.275 204 70 2 47 250 34 228 6.45e-65 206
MsG0580024464.01.T01 MTR_3g100470 43.277 238 103 5 35 268 31 240 3.34e-57 186
MsG0580024464.01.T01 MTR_5g080580 52.358 212 95 2 40 247 29 238 3.76e-54 180
MsG0580024464.01.T01 MTR_5g066020 40.339 295 122 10 30 318 6 252 5.75e-48 161
MsG0580024464.01.T01 MTR_5g089600 39.456 147 78 2 97 232 76 222 1.85e-30 115
MsG0580024464.01.T01 MTR_5g010330 36.872 179 100 5 98 264 104 281 2.95e-24 100
MsG0580024464.01.T01 MTR_4g057487 34.161 161 96 3 97 247 16 176 3.43e-24 99.0
MsG0580024464.01.T01 MTR_5g089700 35.333 150 87 2 97 237 74 222 3.62e-23 95.9
MsG0580024464.01.T01 MTR_4g057525 34.161 161 96 3 97 247 35 195 6.16e-23 95.5
MsG0580024464.01.T01 MTR_1g032910 35.329 167 92 5 93 245 96 260 3.56e-22 94.7
MsG0580024464.01.T01 MTR_1g053685 32.099 162 101 2 95 247 82 243 1.01e-21 93.2
MsG0580024464.01.T01 MTR_5g089090 37.162 148 87 1 98 239 28 175 3.10e-21 90.1
MsG0580024464.01.T01 MTR_1g061530 41.600 125 69 2 128 248 144 268 3.96e-21 92.8
MsG0580024464.01.T01 MTR_6g061670 42.241 116 64 2 125 237 125 240 9.67e-20 88.2
MsG0580024464.01.T01 MTR_6g061670 42.241 116 64 2 125 237 130 245 1.00e-19 88.2
MsG0580024464.01.T01 MTR_1g079780 35.833 120 76 1 120 238 104 223 1.50e-19 87.8
MsG0580024464.01.T01 MTR_1g073870 33.628 226 97 5 93 318 47 219 6.09e-19 84.3
MsG0580024464.01.T01 MTR_4g098460 35.443 158 85 4 88 237 47 195 2.42e-18 84.0
MsG0580024464.01.T01 MTR_1g076710 39.264 163 77 5 95 237 88 248 3.03e-18 84.3
MsG0580024464.01.T01 MTR_8g098390 38.710 124 72 3 117 237 158 280 8.17e-18 83.2
MsG0580024464.01.T01 MTR_8g036160 43.860 114 60 1 128 237 145 258 1.27e-16 79.7
MsG0580024464.01.T01 MTR_4g098460 34.568 162 86 4 88 237 47 200 1.69e-16 78.6
MsG0580024464.01.T01 MTR_4g069110 38.542 96 59 0 97 192 33 128 2.27e-16 75.9
MsG0580024464.01.T01 MTR_7g077120 30.769 169 108 3 98 260 127 292 4.20e-16 78.2
MsG0580024464.01.T01 MTR_7g116320 37.288 118 74 0 120 237 138 255 5.36e-16 78.2
MsG0580024464.01.T01 MTR_7g074935 49.254 67 34 0 128 194 130 196 1.07e-15 77.0
MsG0580024464.01.T01 MTR_7g116320 39.200 125 72 2 125 245 143 267 3.67e-15 74.7
MsG0580024464.01.T01 MTR_8g078930 34.507 142 71 4 129 251 5 143 7.57e-15 71.6
MsG0580024464.01.T01 MTR_4g055813 37.097 124 76 2 128 249 22 145 1.57e-14 73.2
MsG0580024464.01.T01 MTR_8g031100 37.671 146 85 2 98 237 125 270 2.97e-14 72.8
MsG0580024464.01.T01 MTR_4g101990 49.254 67 34 0 128 194 147 213 1.55e-13 70.5
MsG0580024464.01.T01 MTR_5g011680 32.258 124 77 2 128 244 145 268 2.74e-13 69.7
MsG0580024464.01.T01 MTR_4g055803 38.983 118 62 3 128 237 128 243 3.34e-13 70.1
MsG0580024464.01.T01 MTR_5g011610 30.488 164 102 5 122 281 53 208 1.36e-12 67.8
MsG0580024464.01.T01 MTR_5g011620 27.673 159 105 3 129 285 119 269 3.54e-12 67.4
MsG0580024464.01.T01 MTR_4g055833 38.793 116 65 2 128 237 125 240 5.15e-12 66.2
MsG0580024464.01.T01 MTR_3g116100 29.143 175 94 6 97 245 92 262 9.70e-12 65.5
MsG0580024464.01.T01 MTR_6g060670 35.135 111 70 2 128 238 180 288 2.64e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024464.01.T01 AT4G22810 56.069 346 102 11 1 318 1 324 5.69e-80 246
MsG0580024464.01.T01 AT4G12050 57.349 347 111 9 1 318 1 339 3.01e-75 234
MsG0580024464.01.T01 AT2G45430 56.667 330 118 10 1 318 1 317 9.09e-75 233
MsG0580024464.01.T01 AT2G42940 68.293 164 52 0 96 259 51 214 1.81e-71 222
MsG0580024464.01.T01 AT2G35270 69.872 156 47 0 96 251 76 231 6.80e-71 221
MsG0580024464.01.T01 AT3G60870 56.540 237 71 6 91 318 52 265 3.89e-70 219
MsG0580024464.01.T01 AT4G14465 55.365 233 88 5 91 318 60 281 8.01e-69 216
MsG0580024464.01.T01 AT1G76500 65.244 164 48 1 95 249 69 232 2.51e-63 202
MsG0580024464.01.T01 AT3G04570 69.697 165 42 1 91 247 73 237 4.94e-63 202
MsG0580024464.01.T01 AT4G17800 71.034 145 42 0 107 251 91 235 4.33e-62 199
MsG0580024464.01.T01 AT5G49700 47.619 189 90 3 96 275 54 242 1.87e-56 184
MsG0580024464.01.T01 AT4G35390 72.667 150 39 1 98 245 63 212 3.10e-55 182
MsG0580024464.01.T01 AT3G55560 64.583 144 50 1 105 247 95 238 4.46e-50 169
MsG0580024464.01.T01 AT1G20900 67.296 159 43 1 98 247 86 244 6.45e-50 168
MsG0580024464.01.T01 AT1G14490 46.961 181 84 5 99 269 25 203 8.38e-42 145
MsG0580024464.01.T01 AT1G14490 46.961 181 84 5 99 269 6 184 8.53e-42 144
MsG0580024464.01.T01 AT1G63470 42.466 146 77 3 98 237 147 291 2.61e-25 104
MsG0580024464.01.T01 AT5G62260 40.000 140 78 3 111 245 145 283 2.31e-23 97.8
MsG0580024464.01.T01 AT5G62260 42.424 132 70 3 111 237 145 275 9.20e-23 98.2
MsG0580024464.01.T01 AT5G62260 42.424 132 70 3 111 237 145 275 9.20e-23 98.2
MsG0580024464.01.T01 AT5G51590 43.363 113 61 1 128 237 181 293 5.31e-22 95.9
MsG0580024464.01.T01 AT4G12080 41.593 113 63 1 128 237 173 285 2.47e-21 93.6
MsG0580024464.01.T01 AT2G33620 40.260 154 82 4 87 237 132 278 3.64e-21 92.8
MsG0580024464.01.T01 AT2G33620 40.260 154 82 4 87 237 132 278 3.64e-21 92.8
MsG0580024464.01.T01 AT2G33620 40.260 154 82 4 87 237 132 278 3.64e-21 92.8
MsG0580024464.01.T01 AT2G33620 40.260 154 82 4 87 237 132 278 3.64e-21 92.8
MsG0580024464.01.T01 AT4G25320 41.593 113 63 1 128 237 169 281 6.12e-21 92.8
MsG0580024464.01.T01 AT4G17950 37.821 156 90 3 87 237 185 338 1.10e-20 92.4
MsG0580024464.01.T01 AT3G04590 36.364 110 70 0 128 237 174 283 7.32e-20 89.7
MsG0580024464.01.T01 AT3G04590 36.364 110 70 0 128 237 174 283 1.75e-19 87.4
MsG0580024464.01.T01 AT2G45850 36.538 156 81 5 98 241 132 281 2.51e-18 84.7
MsG0580024464.01.T01 AT2G45850 36.538 156 81 5 98 241 132 281 2.51e-18 84.7
MsG0580024464.01.T01 AT1G63480 31.156 199 116 5 98 276 124 321 3.34e-18 84.3
MsG0580024464.01.T01 AT1G63480 31.156 199 116 5 98 276 124 321 3.34e-18 84.3
MsG0580024464.01.T01 AT1G63480 31.156 199 116 5 98 276 124 321 3.34e-18 84.3
MsG0580024464.01.T01 AT1G63480 31.156 199 116 5 98 276 124 321 3.34e-18 84.3
MsG0580024464.01.T01 AT1G63480 31.156 199 116 5 98 276 124 321 3.34e-18 84.3
MsG0580024464.01.T01 AT1G63480 31.156 199 116 5 98 276 130 327 3.66e-18 84.3
MsG0580024464.01.T01 AT1G63480 31.156 199 116 5 98 276 130 327 3.66e-18 84.3
MsG0580024464.01.T01 AT2G45850 35.948 153 80 5 98 238 132 278 3.19e-17 80.5
MsG0580024464.01.T01 AT4G00200 43.363 113 61 1 128 237 126 238 1.07e-15 77.0
MsG0580024464.01.T01 AT4G00200 43.363 113 61 1 128 237 126 238 1.07e-15 77.0
MsG0580024464.01.T01 AT5G46640 38.514 148 86 2 93 237 150 295 1.29e-13 71.2
MsG0580024464.01.T01 AT4G22770 38.938 113 66 1 128 237 153 265 1.72e-13 70.5
MsG0580024464.01.T01 AT4G22770 38.938 113 66 1 128 237 153 265 1.72e-13 70.5
MsG0580024464.01.T01 AT3G61310 32.877 146 92 2 98 237 134 279 2.06e-12 67.4

Find 91 sgRNAs with CRISPR-Local

Find 97 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGGTGCTTTGATTGCTTC+TGG 0.209013 5:-5239045 MsG0580024464.01.T01:CDS
CCTGCTCCGCCCGCTGCTTC+TGG 0.230880 5:-5239120 MsG0580024464.01.T01:CDS
GTTGCTGCTGTTGGTGTTGA+TGG 0.289751 5:+5239634 None:intergenic
TTAAGATTAGGATTAGAATT+AGG 0.294967 5:+5238835 None:intergenic
GGAGCTGTTGTTACACTTCA+TGG 0.313521 5:-5239186 MsG0580024464.01.T01:CDS
GTGATAATAATCGGTGGTTT+TGG 0.328875 5:+5239375 None:intergenic
AGATGCCTTCTGATAATTTC+TGG 0.330543 5:-5238795 MsG0580024464.01.T01:CDS
GTTGTTGGTGGAAGTGTTGT+TGG 0.349227 5:-5239063 MsG0580024464.01.T01:CDS
CCAGAAGCAGCGGGCGGAGC+AGG 0.354965 5:+5239120 None:intergenic
GATCCAGCTGGTCTTCCTCT+TGG 0.365755 5:+5239408 None:intergenic
TTCGAGATTCTTTCGCTGGC+TGG 0.370912 5:-5239159 MsG0580024464.01.T01:CDS
TTGTCCGCCCGCTAAATATA+TGG 0.390502 5:+5239092 None:intergenic
ACCTTGAAGTTGTTGAATAG+AGG 0.394601 5:+5238948 None:intergenic
ACCTCCTCCGGATTCTAACT+TGG 0.395394 5:+5239467 None:intergenic
AATCTTAATCCTAATCTTCT+CGG 0.405395 5:-5238820 MsG0580024464.01.T01:CDS
GAATCCGGAGGAGGTGGTTC+CGG 0.408435 5:-5239459 MsG0580024464.01.T01:CDS
GGCGGACAAGGGCAGGTTGT+TGG 0.415663 5:-5239078 MsG0580024464.01.T01:CDS
GCAGCGGGCGGAGCAGGTGG+TGG 0.424575 5:+5239126 None:intergenic
TGCTTATGAGAGACTTCCTT+TGG 0.425099 5:-5238986 MsG0580024464.01.T01:CDS
AGAAGATTAGGATTAAGATT+AGG 0.426727 5:+5238823 None:intergenic
CTAAGGCAACCGGCTTCTCC+TGG 0.438533 5:-5239207 MsG0580024464.01.T01:CDS
GGTGGTTCTCCAAGTGGTGG+TGG 0.444866 5:-5238925 MsG0580024464.01.T01:CDS
GGTGCTGTTGTTGCTGCTGT+TGG 0.446147 5:+5239625 None:intergenic
CTTCCTTTGGAAGATGATGA+TGG 0.447229 5:-5238973 MsG0580024464.01.T01:CDS
TCCTCTATTCAACAACTTCA+AGG 0.448261 5:-5238949 MsG0580024464.01.T01:CDS
TCTGATAATTTCTGGCCAAC+CGG 0.452010 5:-5238787 MsG0580024464.01.T01:CDS
CCTCCTCCGGATTCTAACTT+GGG 0.455968 5:+5239468 None:intergenic
AGCGGAAGTAGCAGCGGCGG+TGG 0.456861 5:-5239549 MsG0580024464.01.T01:CDS
GGCATCTGACCGAGAAGATT+AGG 0.459191 5:+5238811 None:intergenic
GCTGTAAAGTGTGGAATTGA+TGG 0.472588 5:+5239604 None:intergenic
GGTTCTCCAAGTGGTGGTGG+TGG 0.480891 5:-5238922 MsG0580024464.01.T01:CDS
AAGGTTCGAGATTCTTTCGC+TGG 0.482991 5:-5239163 MsG0580024464.01.T01:CDS
GAAGCAGACATAATAACAAC+AGG 0.487835 5:+5239021 None:intergenic
AAACGTGACACTAAGGCAAC+CGG 0.494419 5:-5239217 MsG0580024464.01.T01:CDS
TTTAGCCCCAAGTTAGAATC+CGG 0.494865 5:-5239474 MsG0580024464.01.T01:CDS
TGATGCAAACGCCTCTTTGA+CGG 0.495629 5:+5239262 None:intergenic
ATATATTTAGCGGGCGGACA+AGG 0.504387 5:-5239090 MsG0580024464.01.T01:CDS
AGACCAAGAGGAAGACCAGC+TGG 0.509576 5:-5239411 MsG0580024464.01.T01:CDS
AGATTAGGATTAGAATTAGG+AGG 0.514675 5:+5238838 None:intergenic
CGCCTTGAAAACTCATGTGA+TGG 0.515478 5:-5239337 MsG0580024464.01.T01:CDS
CATTGAATCCGTGTCGCCAC+CGG 0.518639 5:+5239440 None:intergenic
GCCACCGGAACCACCTCCTC+CGG 0.519443 5:+5239455 None:intergenic
TGGTTTGACCATATATTTAG+CGG 0.520577 5:-5239100 MsG0580024464.01.T01:CDS
GTTTGCATCATGAGTGGGAC+AGG 0.526109 5:-5239249 MsG0580024464.01.T01:CDS
GGTTTGACCATATATTTAGC+GGG 0.527226 5:-5239099 MsG0580024464.01.T01:CDS
TTTAGCGGGCGGACAAGGGC+AGG 0.528930 5:-5239085 MsG0580024464.01.T01:CDS
TAATATCATCATGATCAATA+CGG 0.530969 5:+5238757 None:intergenic
AAGTTAGAATCCGGAGGAGG+TGG 0.540145 5:-5239465 MsG0580024464.01.T01:CDS
TGAAGTGTAACAACAGCTCC+AGG 0.541310 5:+5239189 None:intergenic
TGATCAATACGGAGAACGAC+CGG 0.541431 5:+5238768 None:intergenic
CTGTCACGTGTGATAATAAT+CGG 0.545674 5:+5239366 None:intergenic
ATTCAACAACTTCAAGGTGG+TGG 0.546696 5:-5238943 MsG0580024464.01.T01:CDS
AGGTGGTTCCGGTGGCGACA+CGG 0.546707 5:-5239448 MsG0580024464.01.T01:CDS
TTTGCTAGACGCCGTCAAAG+AGG 0.554223 5:-5239273 MsG0580024464.01.T01:CDS
TTAGGATTAGAATTAGGAGG+AGG 0.554265 5:+5238841 None:intergenic
TCTCTTGCTGTGTGGAAAGG+TGG 0.554885 5:+5239669 None:intergenic
GGACAAGGGCAGGTTGTTGG+TGG 0.555291 5:-5239075 MsG0580024464.01.T01:CDS
GAAGCAGCGGGCGGAGCAGG+TGG 0.558808 5:+5239123 None:intergenic
TCCGGAGGAGGTGGTTCCGG+TGG 0.560060 5:-5239456 MsG0580024464.01.T01:CDS
ACAACAGCTCCAGGAGAAGC+CGG 0.562958 5:+5239198 None:intergenic
GTTGTTGCTGCTGTAAAGTG+TGG 0.572769 5:+5239595 None:intergenic
CGGTTACAAACGTGACACTA+AGG 0.574287 5:-5239224 MsG0580024464.01.T01:CDS
CTGTTGTTACACTTCATGGA+AGG 0.580978 5:-5239182 MsG0580024464.01.T01:CDS
CCCAAGTTAGAATCCGGAGG+AGG 0.587598 5:-5239468 MsG0580024464.01.T01:CDS
ATGGTCAAACCAGAAGCAGC+GGG 0.592455 5:+5239111 None:intergenic
GAGGCGTTTGCATCATGAGT+GGG 0.596897 5:-5239254 MsG0580024464.01.T01:CDS
CAAGGTGGTGGTTCTCCAAG+TGG 0.597019 5:-5238931 MsG0580024464.01.T01:CDS
CATCATGAGTGGGACAGGAA+CGG 0.597354 5:-5239244 MsG0580024464.01.T01:CDS
CTTGCTGTGTGGAAAGGTGG+AGG 0.605189 5:+5239672 None:intergenic
TATATTTAGCGGGCGGACAA+GGG 0.608521 5:-5239089 MsG0580024464.01.T01:CDS
GGTGGTGGTTCTCCAAGTGG+TGG 0.609546 5:-5238928 MsG0580024464.01.T01:CDS
AGATCTCTTGCTGTGTGGAA+AGG 0.616128 5:+5239666 None:intergenic
CTCCTCCGGATTCTAACTTG+GGG 0.622134 5:+5239469 None:intergenic
CAAAGCGGAAGTAGCAGCGG+CGG 0.624512 5:-5239552 MsG0580024464.01.T01:CDS
GAACCATCATCATCTTCCAA+AGG 0.634834 5:+5238970 None:intergenic
AGAGGCGTTTGCATCATGAG+TGG 0.639567 5:-5239255 MsG0580024464.01.T01:CDS
CAATACGGAGAACGACCGGT+TGG 0.641650 5:+5238772 None:intergenic
GTCAAACCAGAAGCAGCGGG+CGG 0.648457 5:+5239114 None:intergenic
AGCCCCAAGTTAGAATCCGG+AGG 0.649404 5:-5239471 MsG0580024464.01.T01:CDS
TCAATGACAAGAAGACCAAG+AGG 0.650544 5:-5239423 MsG0580024464.01.T01:CDS
TATGGTCAAACCAGAAGCAG+CGG 0.651114 5:+5239110 None:intergenic
ATGGATCAAATAACATCACA+TGG 0.651930 5:-5239705 MsG0580024464.01.T01:CDS
GAACAAAGCGGAAGTAGCAG+CGG 0.653465 5:-5239555 MsG0580024464.01.T01:CDS
GTTGGCCAGAAATTATCAGA+AGG 0.660128 5:+5238790 None:intergenic
GATGAAGATCTCTTGCTGTG+TGG 0.664521 5:+5239661 None:intergenic
TTGACCATATATTTAGCGGG+CGG 0.665260 5:-5239096 MsG0580024464.01.T01:CDS
CTTGAAAACTCATGTGATGG+AGG 0.692082 5:-5239334 MsG0580024464.01.T01:CDS
ACAGATCAAGATGAACAAAG+CGG 0.697061 5:-5239567 MsG0580024464.01.T01:CDS
TCACGTGTGATAATAATCGG+TGG 0.702591 5:+5239369 None:intergenic
TCTATTCAACAACTTCAAGG+TGG 0.711490 5:-5238946 MsG0580024464.01.T01:CDS
CATGTGATGGAGGTTGCAGA+CGG 0.715960 5:-5239324 MsG0580024464.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAGATTAGGATTAGAATT+AGG + Chr5:5239644-5239663 None:intergenic 20.0%
! AATCTTAATCCTAATCTTCT+CGG - Chr5:5239656-5239675 MsG0580024464.01.T01:CDS 25.0%
! AGAAGATTAGGATTAAGATT+AGG + Chr5:5239656-5239675 None:intergenic 25.0%
AGATTAGGATTAGAATTAGG+AGG + Chr5:5239641-5239660 None:intergenic 30.0%
ATGGATCAAATAACATCACA+TGG - Chr5:5238771-5238790 MsG0580024464.01.T01:CDS 30.0%
TGGTTTGACCATATATTTAG+CGG - Chr5:5239376-5239395 MsG0580024464.01.T01:CDS 30.0%
ACAGATCAAGATGAACAAAG+CGG - Chr5:5238909-5238928 MsG0580024464.01.T01:CDS 35.0%
ACCTTGAAGTTGTTGAATAG+AGG + Chr5:5239531-5239550 None:intergenic 35.0%
AGATGCCTTCTGATAATTTC+TGG - Chr5:5239681-5239700 MsG0580024464.01.T01:CDS 35.0%
CTGTCACGTGTGATAATAAT+CGG + Chr5:5239113-5239132 None:intergenic 35.0%
GAAGCAGACATAATAACAAC+AGG + Chr5:5239458-5239477 None:intergenic 35.0%
GGTTTGACCATATATTTAGC+GGG - Chr5:5239377-5239396 MsG0580024464.01.T01:CDS 35.0%
TCCTCTATTCAACAACTTCA+AGG - Chr5:5239527-5239546 MsG0580024464.01.T01:CDS 35.0%
TCTATTCAACAACTTCAAGG+TGG - Chr5:5239530-5239549 MsG0580024464.01.T01:CDS 35.0%
TTAGGATTAGAATTAGGAGG+AGG + Chr5:5239638-5239657 None:intergenic 35.0%
! GTGATAATAATCGGTGGTTT+TGG + Chr5:5239104-5239123 None:intergenic 35.0%
!!! TGTTGTTGCTGTTTTCTTCT+CGG + Chr5:5238968-5238987 None:intergenic 35.0%
ATTCAACAACTTCAAGGTGG+TGG - Chr5:5239533-5239552 MsG0580024464.01.T01:CDS 40.0%
CTGTTGTTACACTTCATGGA+AGG - Chr5:5239294-5239313 MsG0580024464.01.T01:CDS 40.0%
CTTGAAAACTCATGTGATGG+AGG - Chr5:5239142-5239161 MsG0580024464.01.T01:CDS 40.0%
GAACCATCATCATCTTCCAA+AGG + Chr5:5239509-5239528 None:intergenic 40.0%
GCTGTAAAGTGTGGAATTGA+TGG + Chr5:5238875-5238894 None:intergenic 40.0%
GTTGGCCAGAAATTATCAGA+AGG + Chr5:5239689-5239708 None:intergenic 40.0%
TCAATGACAAGAAGACCAAG+AGG - Chr5:5239053-5239072 MsG0580024464.01.T01:CDS 40.0%
TCACGTGTGATAATAATCGG+TGG + Chr5:5239110-5239129 None:intergenic 40.0%
TGCTTATGAGAGACTTCCTT+TGG - Chr5:5239490-5239509 MsG0580024464.01.T01:CDS 40.0%
TTGACCATATATTTAGCGGG+CGG - Chr5:5239380-5239399 MsG0580024464.01.T01:CDS 40.0%
TTTAGCCCCAAGTTAGAATC+CGG - Chr5:5239002-5239021 MsG0580024464.01.T01:CDS 40.0%
! CAGCAACAACAACAGCTTTT+AGG - Chr5:5239581-5239600 MsG0580024464.01.T01:CDS 40.0%
! CTCCATCACATGAGTTTTCA+AGG + Chr5:5239144-5239163 None:intergenic 40.0%
! CTTCCTTTGGAAGATGATGA+TGG - Chr5:5239503-5239522 MsG0580024464.01.T01:CDS 40.0%
!! TCTGATAATTTCTGGCCAAC+CGG - Chr5:5239689-5239708 MsG0580024464.01.T01:CDS 40.0%
!! TGTTTTCTTCTCGGTTTGTG+AGG + Chr5:5238959-5238978 None:intergenic 40.0%
!!! CGGTGGTTTTGGTTTGTTTT+TGG + Chr5:5239093-5239112 None:intergenic 40.0%
AAACGTGACACTAAGGCAAC+CGG - Chr5:5239259-5239278 MsG0580024464.01.T01:CDS 45.0%
AAGGTTCGAGATTCTTTCGC+TGG - Chr5:5239313-5239332 MsG0580024464.01.T01:CDS 45.0%
CGCCTTGAAAACTCATGTGA+TGG - Chr5:5239139-5239158 MsG0580024464.01.T01:CDS 45.0%
CGGTTACAAACGTGACACTA+AGG - Chr5:5239252-5239271 MsG0580024464.01.T01:CDS 45.0%
GGAGCTGTTGTTACACTTCA+TGG - Chr5:5239290-5239309 MsG0580024464.01.T01:CDS 45.0%
GTTGTTGCTGCTGTAAAGTG+TGG + Chr5:5238884-5238903 None:intergenic 45.0%
TATGGTCAAACCAGAAGCAG+CGG + Chr5:5239369-5239388 None:intergenic 45.0%
TGAAGTGTAACAACAGCTCC+AGG + Chr5:5239290-5239309 None:intergenic 45.0%
TGATGCAAACGCCTCTTTGA+CGG + Chr5:5239217-5239236 None:intergenic 45.0%
TTGTCCGCCCGCTAAATATA+TGG + Chr5:5239387-5239406 None:intergenic 45.0%
! AGATCTCTTGCTGTGTGGAA+AGG + Chr5:5238813-5238832 None:intergenic 45.0%
! ATATATTTAGCGGGCGGACA+AGG - Chr5:5239386-5239405 MsG0580024464.01.T01:CDS 45.0%
! GATGAAGATCTCTTGCTGTG+TGG + Chr5:5238818-5238837 None:intergenic 45.0%
! GGAGGCATAGCTTGAAAAAG+TGG + Chr5:5239620-5239639 None:intergenic 45.0%
! GTTGGTGCTTTGATTGCTTC+TGG - Chr5:5239431-5239450 MsG0580024464.01.T01:CDS 45.0%
! TATATTTAGCGGGCGGACAA+GGG - Chr5:5239387-5239406 MsG0580024464.01.T01:CDS 45.0%
!! GTTGTTGGTGGAAGTGTTGT+TGG - Chr5:5239413-5239432 MsG0580024464.01.T01:CDS 45.0%
!!! GGTTTGTTTTTGGATCCAGC+TGG + Chr5:5239083-5239102 None:intergenic 45.0%
AAGTTAGAATCCGGAGGAGG+TGG - Chr5:5239011-5239030 MsG0580024464.01.T01:CDS 50.0%
ACCTCCTCCGGATTCTAACT+TGG + Chr5:5239012-5239031 None:intergenic 50.0%
ATGGTCAAACCAGAAGCAGC+GGG + Chr5:5239368-5239387 None:intergenic 50.0%
CATCATGAGTGGGACAGGAA+CGG - Chr5:5239232-5239251 MsG0580024464.01.T01:CDS 50.0%
CCTCCTCCGGATTCTAACTT+GGG + Chr5:5239011-5239030 None:intergenic 50.0%
CTCCTCCGGATTCTAACTTG+GGG + Chr5:5239010-5239029 None:intergenic 50.0%
GAACAAAGCGGAAGTAGCAG+CGG - Chr5:5238921-5238940 MsG0580024464.01.T01:CDS 50.0%
GGCATCTGACCGAGAAGATT+AGG + Chr5:5239668-5239687 None:intergenic 50.0%
GTTTGCATCATGAGTGGGAC+AGG - Chr5:5239227-5239246 MsG0580024464.01.T01:CDS 50.0%
TTCGAGATTCTTTCGCTGGC+TGG - Chr5:5239317-5239336 MsG0580024464.01.T01:CDS 50.0%
TTTGCTAGACGCCGTCAAAG+AGG - Chr5:5239203-5239222 MsG0580024464.01.T01:CDS 50.0%
! CATGTGATGGAGGTTGCAGA+CGG - Chr5:5239152-5239171 MsG0580024464.01.T01:CDS 50.0%
! GAGGCGTTTGCATCATGAGT+GGG - Chr5:5239222-5239241 MsG0580024464.01.T01:CDS 50.0%
! TCTCTTGCTGTGTGGAAAGG+TGG + Chr5:5238810-5238829 None:intergenic 50.0%
!! AGAGGCGTTTGCATCATGAG+TGG - Chr5:5239221-5239240 MsG0580024464.01.T01:CDS 50.0%
!! GTTGCTGCTGTTGGTGTTGA+TGG + Chr5:5238845-5238864 None:intergenic 50.0%
ACAACAGCTCCAGGAGAAGC+CGG + Chr5:5239281-5239300 None:intergenic 55.0%
AGACCAAGAGGAAGACCAGC+TGG - Chr5:5239065-5239084 MsG0580024464.01.T01:CDS 55.0%
AGCCCCAAGTTAGAATCCGG+AGG - Chr5:5239005-5239024 MsG0580024464.01.T01:CDS 55.0%
CAATACGGAGAACGACCGGT+TGG + Chr5:5239707-5239726 None:intergenic 55.0%
CATTGAATCCGTGTCGCCAC+CGG + Chr5:5239039-5239058 None:intergenic 55.0%
CCCAAGTTAGAATCCGGAGG+AGG - Chr5:5239008-5239027 MsG0580024464.01.T01:CDS 55.0%
TGAACACCACCACCACCACT+TGG + Chr5:5239563-5239582 None:intergenic 55.0%
! CAAGGTGGTGGTTCTCCAAG+TGG - Chr5:5239545-5239564 MsG0580024464.01.T01:CDS 55.0%
! CTTGCTGTGTGGAAAGGTGG+AGG + Chr5:5238807-5238826 None:intergenic 55.0%
!! GATCCAGCTGGTCTTCCTCT+TGG + Chr5:5239071-5239090 None:intergenic 55.0%
!! GGTGCTGTTGTTGCTGCTGT+TGG + Chr5:5238854-5238873 None:intergenic 55.0%
CAAAGCGGAAGTAGCAGCGG+CGG - Chr5:5238924-5238943 MsG0580024464.01.T01:CDS 60.0%
GAATCCGGAGGAGGTGGTTC+CGG - Chr5:5239017-5239036 MsG0580024464.01.T01:CDS 60.0%
GGACAAGGGCAGGTTGTTGG+TGG - Chr5:5239401-5239420 MsG0580024464.01.T01:CDS 60.0%
GGTGGTTCTCCAAGTGGTGG+TGG - Chr5:5239551-5239570 MsG0580024464.01.T01:CDS 60.0%
GTCAAACCAGAAGCAGCGGG+CGG + Chr5:5239365-5239384 None:intergenic 60.0%
! CTAAGGCAACCGGCTTCTCC+TGG - Chr5:5239269-5239288 MsG0580024464.01.T01:CDS 60.0%
! GGTGGTGGTTCTCCAAGTGG+TGG - Chr5:5239548-5239567 MsG0580024464.01.T01:CDS 60.0%
!! GGTTCTCCAAGTGGTGGTGG+TGG - Chr5:5239554-5239573 MsG0580024464.01.T01:CDS 60.0%
AGGTGGTTCCGGTGGCGACA+CGG - Chr5:5239028-5239047 MsG0580024464.01.T01:CDS 65.0%
GGCGGACAAGGGCAGGTTGT+TGG - Chr5:5239398-5239417 MsG0580024464.01.T01:CDS 65.0%
! TTTAGCGGGCGGACAAGGGC+AGG - Chr5:5239391-5239410 MsG0580024464.01.T01:CDS 65.0%
AGCGGAAGTAGCAGCGGCGG+TGG - Chr5:5238927-5238946 MsG0580024464.01.T01:CDS 70.0%
GCCACCGGAACCACCTCCTC+CGG + Chr5:5239024-5239043 None:intergenic 70.0%
TCCGGAGGAGGTGGTTCCGG+TGG - Chr5:5239020-5239039 MsG0580024464.01.T01:CDS 70.0%
CCAGAAGCAGCGGGCGGAGC+AGG + Chr5:5239359-5239378 None:intergenic 75.0%
CCTGCTCCGCCCGCTGCTTC+TGG - Chr5:5239356-5239375 MsG0580024464.01.T01:CDS 75.0%
GAAGCAGCGGGCGGAGCAGG+TGG + Chr5:5239356-5239375 None:intergenic 75.0%
! GCAGCGGGCGGAGCAGGTGG+TGG + Chr5:5239353-5239372 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
Chr5 gene 5238771 5239727 5238771 ID=MsG0580024464.01;Name=MsG0580024464.01
Chr5 mRNA 5238771 5239727 5238771 ID=MsG0580024464.01.T01;Parent=MsG0580024464.01;Name=MsG0580024464.01.T01;_AED=0.13;_eAED=0.13;_QI=0|-1|0|1|-1|1|1|0|318
Chr5 exon 5238771 5239727 5238771 ID=MsG0580024464.01.T01:exon:755;Parent=MsG0580024464.01.T01
Chr5 CDS 5238771 5239727 5238771 ID=MsG0580024464.01.T01:cds;Parent=MsG0580024464.01.T01
Gene Sequence

>MsG0580024464.01.T01

ATGGATCAAATAACATCACATGGACATTCACTTCCTCCACCTTTCCACACAGCAAGAGATCTTCATCTTCACCATCAACACCAACAGCAGCAACAACAGCACCATCAATTCCACACTTTACAGCAGCAACAACAAACAACAGATCAAGATGAACAAAGCGGAAGTAGCAGCGGCGGTGGACTCAACCTCACAAACCGAGAAGAAAACAGCAACAACAAGTTCAGCACAGAATTTAGCCCCAAGTTAGAATCCGGAGGAGGTGGTTCCGGTGGCGACACGGATTCAATGACAAGAAGACCAAGAGGAAGACCAGCTGGATCCAAAAACAAACCAAAACCACCGATTATTATCACACGTGACAGCGCAAACGCCTTGAAAACTCATGTGATGGAGGTTGCAGACGGTTGCGACGTTGTTGAAAGTGTCAATAACTTTGCTAGACGCCGTCAAAGAGGCGTTTGCATCATGAGTGGGACAGGAACGGTTACAAACGTGACACTAAGGCAACCGGCTTCTCCTGGAGCTGTTGTTACACTTCATGGAAGGTTCGAGATTCTTTCGCTGGCTGGATCGTTTCTTCCACCACCTGCTCCGCCCGCTGCTTCTGGTTTGACCATATATTTAGCGGGCGGACAAGGGCAGGTTGTTGGTGGAAGTGTTGTTGGTGCTTTGATTGCTTCTGGACCTGTTGTTATTATGTCTGCTTCTTTTAGCAACGCTGCTTATGAGAGACTTCCTTTGGAAGATGATGATGGTTCCTCTATTCAACAACTTCAAGGTGGTGGTTCTCCAAGTGGTGGTGGTGGTGTTCAGCAACAACAACAGCTTTTAGGAGATTCAACTGCTCCACTTTTTCAAGCTATGCCTCCTCCTAATTCTAATCCTAATCTTAATCCTAATCTTCTCGGTCAGATGCCTTCTGATAATTTCTGGCCAACCGGTCGTTCTCCGTATTGA

Protein sequence

>MsG0580024464.01.T01

MDQITSHGHSLPPPFHTARDLHLHHQHQQQQQQHHQFHTLQQQQQTTDQDEQSGSSSGGGLNLTNREENSNNKFSTEFSPKLESGGGGSGGDTDSMTRRPRGRPAGSKNKPKPPIIITRDSANALKTHVMEVADGCDVVESVNNFARRRQRGVCIMSGTGTVTNVTLRQPASPGAVVTLHGRFEILSLAGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGALIASGPVVIMSASFSNAAYERLPLEDDDGSSIQQLQGGGSPSGGGGVQQQQQLLGDSTAPLFQAMPPPNSNPNLNPNLLGQMPSDNFWPTGRSPY*