AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080049053.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080049053.01.T01 MTR_3g491890 85.656 244 26 3 23 266 6 240 2.42e-147 412
MsG0080049053.01.T01 MTR_5g012110 31.250 128 81 2 143 265 97 222 6.07e-12 64.7
MsG0080049053.01.T01 MTR_5g012110 31.250 128 81 2 143 265 67 192 8.06e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080049053.01.T01 AT5G53490 63.559 236 85 1 31 266 16 250 2.20e-100 293
MsG0080049053.01.T01 AT5G53490 71.292 209 58 2 59 266 28 235 2.59e-99 290
MsG0080049053.01.T01 AT5G53490 70.952 210 58 2 59 266 51 259 2.60e-99 291
MsG0080049053.01.T01 AT5G53490 70.952 210 58 2 59 266 28 236 3.72e-99 290
MsG0080049053.01.T01 AT1G12250 30.723 166 106 4 105 265 5 166 2.39e-14 70.5
MsG0080049053.01.T01 AT1G12250 31.210 157 100 3 114 265 87 240 6.50e-14 70.5
MsG0080049053.01.T01 AT1G12250 33.333 105 65 1 166 265 1 105 3.44e-12 63.2

Find 65 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAACATTTCAATTTACTTT+TGG 0.220928 contig637end:-13637 None:intergenic
CATTTGTGAAGTCACATTTC+CGG 0.250911 contig637end:-12480 None:intergenic
CAGACAGAGTCTTCCCCTTC+AGG 0.276167 contig637end:-12513 None:intergenic
TTGTATTTCTGCATATCTTT+TGG 0.289675 contig637end:-13452 None:intergenic
GTTTGTTCTCTTGTAGTTGT+AGG 0.291620 contig637end:+10436 MsG0080049053.01.T01:CDS
TGTTGGATCGTGTTAATTTC+GGG 0.294360 contig637end:+13313 MsG0080049053.01.T01:CDS
GTGTTGGATCGTGTTAATTT+CGG 0.299450 contig637end:+13312 MsG0080049053.01.T01:CDS
CACCTTTGACGATGCTAAAC+TGG 0.319451 contig637end:+13386 MsG0080049053.01.T01:CDS
TTTCGGGAAAGCAGATCTTC+AGG 0.327829 contig637end:+13329 MsG0080049053.01.T01:CDS
ATCTTCAGGGAGCTGTATTT+AGG 0.328541 contig637end:+13343 MsG0080049053.01.T01:CDS
GAAGGCGAAGCTGAGTTAGA+TGG 0.362215 contig637end:+10460 MsG0080049053.01.T01:CDS
CGCTGCGAACGTGCATTTGT+TGG 0.372475 contig637end:+12409 MsG0080049053.01.T01:CDS
GCATTTGTTGGCAACACAAT+TGG 0.392635 contig637end:+12421 MsG0080049053.01.T01:CDS
TCCCGTTACTGCTGCTACTC+AGG 0.417361 contig637end:+10576 MsG0080049053.01.T01:CDS
TGTCAAAGGCTTATGCAGTT+GGG 0.417381 contig637end:+12590 MsG0080049053.01.T01:CDS
AAATGCACGTTCGCAGCGAT+TGG 0.439609 contig637end:-12404 None:intergenic
TGTTGGCAACACAATTGGTC+AGG 0.445456 contig637end:+12426 MsG0080049053.01.T01:CDS
CATGTCAGCACCGTCAAACT+TGG 0.449162 contig637end:-12554 None:intergenic
ACCTGAGTAGCAGCAGTAAC+GGG 0.463670 contig637end:-10577 None:intergenic
AACACAATTGGTCAGGCAAA+TGG 0.475300 contig637end:+12433 MsG0080049053.01.T01:CDS
AGCTCGACCCTCGTCGCCGA+TGG 0.476213 contig637end:-13475 None:intergenic
GATTGGGCTCAGTTGACAAT+GGG 0.478708 contig637end:-12387 None:intergenic
CGGGAGTTGAATTGAAAGGT+TGG 0.482334 contig637end:-10247 None:intergenic
ACTTAGTCTCAACAAAATCA+AGG 0.488052 contig637end:+10504 MsG0080049053.01.T01:CDS
TTCGGGAAAGCAGATCTTCA+GGG 0.490270 contig637end:+13330 MsG0080049053.01.T01:CDS
TTTGGTTGAGTAGTTGCGTA+TGG 0.490995 contig637end:-10283 None:intergenic
ATGTCAGATGCCAAGTTTGA+CGG 0.493715 contig637end:+12544 MsG0080049053.01.T01:CDS
AATGCACGTTCGCAGCGATT+GGG 0.510575 contig637end:-12403 None:intergenic
CAGAGTCTTCCCCTTCAGGT+TGG 0.517528 contig637end:-12509 None:intergenic
ATGTCAAAGGCTTATGCAGT+TGG 0.517874 contig637end:+12589 MsG0080049053.01.T01:CDS
GTAGTTGCGTATGGACAAAC+TGG 0.517957 contig637end:-10274 None:intergenic
AGTGGTGAAACATGGTCGTT+TGG 0.528721 contig637end:-10301 None:intergenic
GTCAAAGGCTTATGCAGTTG+GGG 0.538436 contig637end:+12591 MsG0080049053.01.T01:CDS
AACCTGAGTAGCAGCAGTAA+CGG 0.539008 contig637end:-10578 None:intergenic
TTGAAGTGCAGAAAGAAGAA+TGG 0.545702 contig637end:+10224 MsG0080049053.01.T01:CDS
TCCGCAGATAAGCAAGGGTG+TGG 0.547307 contig637end:+10169 MsG0080049053.01.T01:CDS
TTCGCGGGAGTTGAATTGAA+AGG 0.550681 contig637end:-10251 None:intergenic
ACGACAAAGCATTAGATCTC+CGG 0.559241 contig637end:+12461 MsG0080049053.01.T01:CDS
CAGTTTAGCATCGTCAAAGG+TGG 0.560849 contig637end:-13385 None:intergenic
TCTCTTGTAGTTGTAGGAGA+AGG 0.562555 contig637end:+10442 MsG0080049053.01.T01:CDS
GACAGAAGTTGTAATGTCAA+AGG 0.563514 contig637end:+12576 MsG0080049053.01.T01:CDS
CGATTGGGCTCAGTTGACAA+TGG 0.568426 contig637end:-12388 None:intergenic
GGACTTCTCAAATGCAGTGT+TGG 0.574276 contig637end:+13296 MsG0080049053.01.T01:CDS
TTCCAGTTTAGCATCGTCAA+AGG 0.578875 contig637end:-13388 None:intergenic
TTGTTGAGACTAAGTAACCT+TGG 0.583587 contig637end:-10496 None:intergenic
ATAAGCTGCAAGAATACCAC+AGG 0.587978 contig637end:-10533 None:intergenic
CGTATGGACAAACTGGTTCG+CGG 0.591395 contig637end:-10267 None:intergenic
TATTTATCCGCAGATAAGCA+AGG 0.594777 contig637end:+10163 MsG0080049053.01.T01:CDS
GACGAGGGTCGAGCTGAGCT+AGG 0.596639 contig637end:+13483 MsG0080049053.01.T01:CDS
CTTAGTCTCAACAAAATCAA+GGG 0.599258 contig637end:+10505 MsG0080049053.01.T01:CDS
ATATGCAGAAATACAACCAT+CGG 0.602365 contig637end:+13459 MsG0080049053.01.T01:CDS
GTATGGACAAACTGGTTCGC+GGG 0.604115 contig637end:-10266 None:intergenic
TCTACTAGTTCTCCTCATCA+AGG 0.605342 contig637end:-13597 None:intergenic
AATACAACCATCGGCGACGA+GGG 0.628415 contig637end:+13468 MsG0080049053.01.T01:CDS
AAATACAACCATCGGCGACG+AGG 0.630860 contig637end:+13467 MsG0080049053.01.T01:CDS
ATTTATCCGCAGATAAGCAA+GGG 0.633440 contig637end:+10164 MsG0080049053.01.T01:CDS
TATATAAGAGTGCCTTGATG+AGG 0.637175 contig637end:+13585 MsG0080049053.01.T01:three_prime_UTR
TCCACACCCTTGCTTATCTG+CGG 0.639608 contig637end:-10170 None:intergenic
AAAATCAAGGGTGTTGCCTG+TGG 0.646472 contig637end:+10517 MsG0080049053.01.T01:CDS
TTTGACGATGCTAAACTGGA+AGG 0.655477 contig637end:+13390 MsG0080049053.01.T01:CDS
ATTGGGCTCAGTTGACAATG+GGG 0.660543 contig637end:-12386 None:intergenic
TCAAAGGCTTATGCAGTTGG+GGG 0.667718 contig637end:+12592 MsG0080049053.01.T01:CDS
AGATAAGCAAGGGTGTGGAG+TGG 0.671399 contig637end:+10174 MsG0080049053.01.T01:CDS
TTGGGCTCAGTTGACAATGG+GGG 0.687518 contig637end:-12385 None:intergenic
ATGGAACTGAGAATAAACCA+AGG 0.746677 contig637end:+10479 MsG0080049053.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGAAAAAACACAAAAAAAT+TGG - contig637end:12117-12136 None:intergenic 15.0%
!! CAAATTAAAACATGTAATAT+AGG + contig637end:11167-11186 MsG0080049053.01.T01:intron 15.0%
!! TGAAAAAACACAAAAAAATT+GGG - contig637end:12116-12135 None:intergenic 15.0%
!!! AAAACATTTCAATTTACTTT+TGG - contig637end:13640-13659 None:intergenic 15.0%
!! AAACATTTACTAAACTTGAA+TGG + contig637end:12783-12802 MsG0080049053.01.T01:intron 20.0%
!! AATGTATAGAAACATGTATT+TGG - contig637end:12698-12717 None:intergenic 20.0%
!! AATGTATCTATAAATCCAAA+TGG + contig637end:11245-11264 MsG0080049053.01.T01:intron 20.0%
!! ACAAACAAATTTAAATGTCT+TGG - contig637end:10422-10441 None:intergenic 20.0%
!! TATGTATCTATAAATCCAAA+TGG + contig637end:11314-11333 MsG0080049053.01.T01:intron 20.0%
!! TGATTCATACTAATACTATT+TGG + contig637end:13223-13242 MsG0080049053.01.T01:intron 20.0%
!!! ATGAAGAATAACTTTTATGT+TGG + contig637end:12760-12779 MsG0080049053.01.T01:intron 20.0%
!!! CTCCTTTTTTTTTTTTGAAA+CGG + contig637end:11532-11551 MsG0080049053.01.T01:intron 20.0%
!!! GCTTATTTTATCATAGAAAT+TGG + contig637end:13090-13109 MsG0080049053.01.T01:intron 20.0%
!!! TTAGATTGGATTATTAGTTT+TGG - contig637end:11813-11832 None:intergenic 20.0%
! AAAACACAAAAAAATTGGGT+TGG - contig637end:12112-12131 None:intergenic 25.0%
! AACAATCGTACAAGATTATT+AGG + contig637end:10705-10724 MsG0080049053.01.T01:intron 25.0%
! AATCAGAGGTAATTATTATC+AGG - contig637end:12835-12854 None:intergenic 25.0%
! ACTTCATCATTTCATTCAAA+TGG + contig637end:11961-11980 MsG0080049053.01.T01:intron 25.0%
! ATATTCAATACCAACCTAAA+TGG - contig637end:12219-12238 None:intergenic 25.0%
! CCACTAACTACTATTAATAA+GGG + contig637end:13051-13070 MsG0080049053.01.T01:intron 25.0%
! GGTTAGTAAGTTAATTAGAT+TGG - contig637end:11827-11846 None:intergenic 25.0%
! TCAAAAAAAAAAAAGGAGCA+GGG - contig637end:11530-11549 None:intergenic 25.0%
! TCCACTAACTACTATTAATA+AGG + contig637end:13050-13069 MsG0080049053.01.T01:intron 25.0%
! TGAAAGATGAATAAAATCAG+AGG - contig637end:12849-12868 None:intergenic 25.0%
! TTCAAAAAAAAAAAAGGAGC+AGG - contig637end:11531-11550 None:intergenic 25.0%
!! AAGTGAGTGTTAATATTTTC+AGG - contig637end:10612-10631 None:intergenic 25.0%
!! ATGATAGTACTGAACTTATT+AGG + contig637end:10943-10962 MsG0080049053.01.T01:intron 25.0%
!! TGATTTTGTACTAGTAAACA+AGG - contig637end:12633-12652 None:intergenic 25.0%
!! TGCCGTTTCAAAAAAAAAAA+AGG - contig637end:11537-11556 None:intergenic 25.0%
!!! TTGGATTATTAGTTTTGGTT+TGG - contig637end:11808-11827 None:intergenic 25.0%
!!! TTGTATTTCTGCATATCTTT+TGG - contig637end:13455-13474 None:intergenic 25.0%
!!! TTGTGTTTTTTCATTGTGAT+TGG + contig637end:12123-12142 MsG0080049053.01.T01:intron 25.0%
AAACCAAATTGAGACAACAA+GGG - contig637end:11485-11504 None:intergenic 30.0%
AAATATTATTCATCGACGAG+AGG + contig637end:11556-11575 MsG0080049053.01.T01:intron 30.0%
AAATGAAAAATCCAACCTGA+AGG + contig637end:12498-12517 MsG0080049053.01.T01:CDS 30.0%
AATATTATTCATCGACGAGA+GGG + contig637end:11557-11576 MsG0080049053.01.T01:intron 30.0%
AATGAAAAATCCAACCTGAA+GGG + contig637end:12499-12518 MsG0080049053.01.T01:CDS 30.0%
ACAAACTTGTCAAAACCATT+TGG - contig637end:11263-11282 None:intergenic 30.0%
ACATGTAATATAGGACCAAA+TGG + contig637end:11176-11195 MsG0080049053.01.T01:intron 30.0%
ACTCAATGCAATCATTAGTT+AGG + contig637end:10635-10654 MsG0080049053.01.T01:intron 30.0%
ACTTAGTCTCAACAAAATCA+AGG + contig637end:10504-10523 MsG0080049053.01.T01:CDS 30.0%
AGAAAGACAATGAAAATCGT+AGG - contig637end:12045-12064 None:intergenic 30.0%
ATACATGGCATTCAACATAA+TGG - contig637end:12922-12941 None:intergenic 30.0%
ATATGCAGAAATACAACCAT+CGG + contig637end:13459-13478 MsG0080049053.01.T01:CDS 30.0%
ATGTATTTGGTCATTCATGA+AGG - contig637end:12685-12704 None:intergenic 30.0%
ATTTCATTCAAATGGTCGTT+CGG + contig637end:11969-11988 MsG0080049053.01.T01:intron 30.0%
CAAAACTTGTCAAAACCATT+TGG - contig637end:11332-11351 None:intergenic 30.0%
CCCTTATTAATAGTAGTTAG+TGG - contig637end:13054-13073 None:intergenic 30.0%
CTTAGTCTCAACAAAATCAA+GGG + contig637end:10505-10524 MsG0080049053.01.T01:CDS 30.0%
GACAAATGGAGTAATATACA+TGG - contig637end:12937-12956 None:intergenic 30.0%
GACACTTAATAAGAGACAAA+TGG - contig637end:12951-12970 None:intergenic 30.0%
GTCATATTTCAAAGCTTAGA+AGG - contig637end:12023-12042 None:intergenic 30.0%
TAAACCAAATTGAGACAACA+AGG - contig637end:11486-11505 None:intergenic 30.0%
TGACAGAAGTCTCATATAAA+CGG - contig637end:13159-13178 None:intergenic 30.0%
! AAAGAAGTGTGAATCACATT+TGG - contig637end:12354-12373 None:intergenic 30.0%
! ACGATTTTCATTGTCTTTCT+GGG + contig637end:12045-12064 MsG0080049053.01.T01:intron 30.0%
! ACTCAATTGTGATCTTTTAC+AGG + contig637end:13270-13289 MsG0080049053.01.T01:intron 30.0%
! GAAGTAAATGTCTCTAAAGA+TGG - contig637end:11946-11965 None:intergenic 30.0%
! TACGATTTTCATTGTCTTTC+TGG + contig637end:12044-12063 MsG0080049053.01.T01:intron 30.0%
! TCTTTCTGCACTTCAATTTT+TGG - contig637end:10220-10239 None:intergenic 30.0%
! TGATCAGGAGAATTTTTCTT+TGG + contig637end:11107-11126 MsG0080049053.01.T01:intron 30.0%
! TTTTCACCCAAACTTGTAAT+AGG - contig637end:11918-11937 None:intergenic 30.0%
!!! CAAATGGTTTTGACAAGTTT+TGG + contig637end:11261-11280 MsG0080049053.01.T01:intron 30.0%
!!! TCATTTTTTGATCAAGCTCA+AGG + contig637end:12186-12205 MsG0080049053.01.T01:intron 30.0%
AAAAAAAAAGGAGCAGGGTT+AGG - contig637end:11525-11544 None:intergenic 35.0%
ACAGACTTGTCAAAACCATT+TGG - contig637end:11194-11213 None:intergenic 35.0%
AGGAAGCCTATTACAAGTTT+GGG + contig637end:11909-11928 MsG0080049053.01.T01:intron 35.0%
ATGAAAAATCCAACCTGAAG+GGG + contig637end:12500-12519 MsG0080049053.01.T01:CDS 35.0%
ATGGAACTGAGAATAAACCA+AGG + contig637end:10479-10498 MsG0080049053.01.T01:CDS 35.0%
ATTTATCCGCAGATAAGCAA+GGG + contig637end:10164-10183 MsG0080049053.01.T01:CDS 35.0%
CATTTGTGAAGTCACATTTC+CGG - contig637end:12483-12502 None:intergenic 35.0%
CGTACAAGATTATTAGGCTA+AGG + contig637end:10711-10730 MsG0080049053.01.T01:intron 35.0%
GACAGAAGTTGTAATGTCAA+AGG + contig637end:12576-12595 MsG0080049053.01.T01:CDS 35.0%
GTGTTGGATCGTGTTAATTT+CGG + contig637end:13312-13331 MsG0080049053.01.T01:CDS 35.0%
GTTGAATTGTTTGTCCAAAC+TGG - contig637end:10738-10757 None:intergenic 35.0%
GTTTGTTCTCTTGTAGTTGT+AGG + contig637end:10436-10455 MsG0080049053.01.T01:CDS 35.0%
TAGGAAGCCTATTACAAGTT+TGG + contig637end:11908-11927 MsG0080049053.01.T01:intron 35.0%
TATAAGTTTATACGTGCTCC+AGG - contig637end:12737-12756 None:intergenic 35.0%
TATGAATCACAACTTCCAAG+TGG - contig637end:13212-13231 None:intergenic 35.0%
TATGTTACTGTTAGTGGAGA+AGG - contig637end:11848-11867 None:intergenic 35.0%
TATTTATCCGCAGATAAGCA+AGG + contig637end:10163-10182 MsG0080049053.01.T01:CDS 35.0%
TCACAGTGCTATACTGAATA+AGG + contig637end:10842-10861 MsG0080049053.01.T01:intron 35.0%
TGAGTCAGTGTCTTGTAATA+TGG - contig637end:13255-13274 None:intergenic 35.0%
TGTTGGATCGTGTTAATTTC+GGG + contig637end:13313-13332 MsG0080049053.01.T01:CDS 35.0%
TTCTTACGATTCTAAACACC+TGG + contig637end:12716-12735 MsG0080049053.01.T01:intron 35.0%
TTGAAGTGCAGAAAGAAGAA+TGG + contig637end:10224-10243 MsG0080049053.01.T01:CDS 35.0%
TTGTTGAGACTAAGTAACCT+TGG - contig637end:10499-10518 None:intergenic 35.0%
TTTCATTCAAATGGTCGTTC+GGG + contig637end:11970-11989 MsG0080049053.01.T01:intron 35.0%
! AGGCAATTTTCCATTTAGGT+TGG + contig637end:12206-12225 MsG0080049053.01.T01:intron 35.0%
! ATTGTGATCTTTTACAGGTG+TGG + contig637end:13275-13294 MsG0080049053.01.T01:intron 35.0%
! CTCAAGGCAATTTTCCATTT+AGG + contig637end:12202-12221 MsG0080049053.01.T01:intron 35.0%
!! GTTTTTGAGGACACTATCAT+TGG + contig637end:13417-13436 MsG0080049053.01.T01:CDS 35.0%
!! TATATAAGAGTGCCTTGATG+AGG + contig637end:13585-13604 MsG0080049053.01.T01:three_prime_UTR 35.0%
!! TTTAGGAACACAGTTTTGTC+AGG + contig637end:13360-13379 MsG0080049053.01.T01:CDS 35.0%
!!! TAGTTTTGGTTTGGTTTGCT+GGG - contig637end:11799-11818 None:intergenic 35.0%
!!! TTAGTTTTGGTTTGGTTTGC+TGG - contig637end:11800-11819 None:intergenic 35.0%
AACACAATTGGTCAGGCAAA+TGG + contig637end:12433-12452 MsG0080049053.01.T01:CDS 40.0%
AACATAGCAGACCTAACACA+TGG + contig637end:11862-11881 MsG0080049053.01.T01:intron 40.0%
ACTCTCAACATATGCACTCA+GGG + contig637end:11009-11028 MsG0080049053.01.T01:intron 40.0%
ATAAGCTGCAAGAATACCAC+AGG - contig637end:10536-10555 None:intergenic 40.0%
ATACAACAGTGGCCGTATAT+AGG + contig637end:11619-11638 MsG0080049053.01.T01:intron 40.0%
ATCTTCAGGGAGCTGTATTT+AGG + contig637end:13343-13362 MsG0080049053.01.T01:CDS 40.0%
ATGTCAAAGGCTTATGCAGT+TGG + contig637end:12589-12608 MsG0080049053.01.T01:CDS 40.0%
ATGTCAGATGCCAAGTTTGA+CGG + contig637end:12544-12563 MsG0080049053.01.T01:CDS 40.0%
ATGTTAGCATGGAGAGAAAC+AGG - contig637end:11069-11088 None:intergenic 40.0%
CTTTCTTCTTCTACACCAGT+TGG - contig637end:11401-11420 None:intergenic 40.0%
GGTAAAATGTCAAGAGTCTG+AGG + contig637end:11991-12010 MsG0080049053.01.T01:intron 40.0%
GTCTGCTATGTTACTGTTAG+TGG - contig637end:11854-11873 None:intergenic 40.0%
GTGTGAATCACATTTGGCTA+AGG - contig637end:12348-12367 None:intergenic 40.0%
GTTCAATGAGACGCTTGATT+TGG + contig637end:10897-10916 MsG0080049053.01.T01:intron 40.0%
TAACCAAACCCATGTGTAGA+GGG - contig637end:11890-11909 None:intergenic 40.0%
TACTCTCAACATATGCACTC+AGG + contig637end:11008-11027 MsG0080049053.01.T01:intron 40.0%
TAGCGACAGAAATACAACAG+TGG + contig637end:11608-11627 MsG0080049053.01.T01:intron 40.0%
TATGACGCTGGGATATACTA+CGG + contig637end:11672-11691 MsG0080049053.01.T01:intron 40.0%
TATTAGGCTAAGGACCAGTT+TGG + contig637end:10721-10740 MsG0080049053.01.T01:intron 40.0%
TCAACTGAGTCTGAATGTTG+AGG + contig637end:12650-12669 MsG0080049053.01.T01:intron 40.0%
TCGTTAATGGCAATTGTCTG+TGG + contig637end:11359-11378 MsG0080049053.01.T01:intron 40.0%
TCTCTTGTAGTTGTAGGAGA+AGG + contig637end:10442-10461 MsG0080049053.01.T01:CDS 40.0%
TGTCAAAGGCTTATGCAGTT+GGG + contig637end:12590-12609 MsG0080049053.01.T01:CDS 40.0%
TTCCAGTTTAGCATCGTCAA+AGG - contig637end:13391-13410 None:intergenic 40.0%
TTTGACGATGCTAAACTGGA+AGG + contig637end:13390-13409 MsG0080049053.01.T01:CDS 40.0%
TTTGGTTGAGTAGTTGCGTA+TGG - contig637end:10286-10305 None:intergenic 40.0%
! ACGACAAAGCATTAGATCTC+CGG + contig637end:12461-12480 MsG0080049053.01.T01:CDS 40.0%
! GATCCCTTGTTGTCTCAATT+TGG + contig637end:11479-11498 MsG0080049053.01.T01:intron 40.0%
! GCATTTGTTGGCAACACAAT+TGG + contig637end:12421-12440 MsG0080049053.01.T01:CDS 40.0%
! TCTACTAGTTCTCCTCATCA+AGG - contig637end:13600-13619 None:intergenic 40.0%
!! GTTTTGGCACTTGTCGTTAA+TGG + contig637end:11346-11365 MsG0080049053.01.T01:intron 40.0%
!! TTCATTGTCTTTCTGGGATC+TGG + contig637end:12051-12070 MsG0080049053.01.T01:intron 40.0%
!! TTTGAAAGTGTTCAGCCACT+TGG + contig637end:13194-13213 MsG0080049053.01.T01:intron 40.0%
!!! AGTTTTGGTTTGGTTTGCTG+GGG - contig637end:11798-11817 None:intergenic 40.0%
!!! GTTGGTTTTCGCTTTGGTTT+TGG - contig637end:11749-11768 None:intergenic 40.0%
AAAAAGGAGCAGGGTTAGGA+AGG - contig637end:11521-11540 None:intergenic 45.0%
AAAAGGAGCAGGGTTAGGAA+GGG - contig637end:11520-11539 None:intergenic 45.0%
AAACCACTCGAATATGACGC+TGG + contig637end:11660-11679 MsG0080049053.01.T01:intron 45.0%
AACCAAACCCATGTGTAGAG+GGG - contig637end:11889-11908 None:intergenic 45.0%
AACCACTCGAATATGACGCT+GGG + contig637end:11661-11680 MsG0080049053.01.T01:intron 45.0%
AACCTGAGTAGCAGCAGTAA+CGG - contig637end:10581-10600 None:intergenic 45.0%
ACCAGAGCAAGTGATTGTGA+AGG - contig637end:10337-10356 None:intergenic 45.0%
ACTCAGGGGAAGAGATCAAA+TGG + contig637end:11024-11043 MsG0080049053.01.T01:intron 45.0%
AGCGTCATATTCGAGTGGTT+TGG - contig637end:11661-11680 None:intergenic 45.0%
AGTGGTGAAACATGGTCGTT+TGG - contig637end:10304-10323 None:intergenic 45.0%
ATGTGGTCATAGGAACCAAC+TGG + contig637end:11383-11402 MsG0080049053.01.T01:intron 45.0%
ATTGGGCTCAGTTGACAATG+GGG - contig637end:12389-12408 None:intergenic 45.0%
CACCTTTGACGATGCTAAAC+TGG + contig637end:13386-13405 MsG0080049053.01.T01:CDS 45.0%
CACTCGGTATCATGTTAGCA+TGG - contig637end:11080-11099 None:intergenic 45.0%
CAGTTTAGCATCGTCAAAGG+TGG - contig637end:13388-13407 None:intergenic 45.0%
CCAGAGCAAGTGATTGTGAA+GGG - contig637end:10336-10355 None:intergenic 45.0%
CGGGAGTTGAATTGAAAGGT+TGG - contig637end:10250-10269 None:intergenic 45.0%
CTAACCAAACCCATGTGTAG+AGG - contig637end:11891-11910 None:intergenic 45.0%
CTCTCAACATATGCACTCAG+GGG + contig637end:11010-11029 MsG0080049053.01.T01:intron 45.0%
GAAGCAGAAGTGGTGAAACA+TGG - contig637end:10312-10331 None:intergenic 45.0%
GATTGGGCTCAGTTGACAAT+GGG - contig637end:12390-12409 None:intergenic 45.0%
GCGTCATATTCGAGTGGTTT+GGG - contig637end:11660-11679 None:intergenic 45.0%
GGACTTCTCAAATGCAGTGT+TGG + contig637end:13296-13315 MsG0080049053.01.T01:CDS 45.0%
GTAGTTGCGTATGGACAAAC+TGG - contig637end:10277-10296 None:intergenic 45.0%
GTCAAAGGCTTATGCAGTTG+GGG + contig637end:12591-12610 MsG0080049053.01.T01:CDS 45.0%
TAAGACACTCCCAAAACTCG+CGG + contig637end:11582-11601 MsG0080049053.01.T01:intron 45.0%
TCAAAGGCTTATGCAGTTGG+GGG + contig637end:12592-12611 MsG0080049053.01.T01:CDS 45.0%
TCCTGATCAACTGTGACACT+CGG - contig637end:11096-11115 None:intergenic 45.0%
TGGCAATTGTCTGTGGAATG+TGG + contig637end:11366-11385 MsG0080049053.01.T01:intron 45.0%
TGTCTGTGGAATGTGGTCAT+AGG + contig637end:11373-11392 MsG0080049053.01.T01:intron 45.0%
TGTTGGCAACACAATTGGTC+AGG + contig637end:12426-12445 MsG0080049053.01.T01:CDS 45.0%
TTCGCGGGAGTTGAATTGAA+AGG - contig637end:10254-10273 None:intergenic 45.0%
TTCGGGAAAGCAGATCTTCA+GGG + contig637end:13330-13349 MsG0080049053.01.T01:CDS 45.0%
TTTCGGGAAAGCAGATCTTC+AGG + contig637end:13329-13348 MsG0080049053.01.T01:CDS 45.0%
! CTCTACACATGGGTTTGGTT+AGG + contig637end:11889-11908 MsG0080049053.01.T01:intron 45.0%
! GGTCTTGTACTAGGAAGTCT+CGG + contig637end:12072-12091 MsG0080049053.01.T01:intron 45.0%
! TTTGGTGTGCCGCCTATATA+CGG - contig637end:11634-11653 None:intergenic 45.0%
!! AAAATCAAGGGTGTTGCCTG+TGG + contig637end:10517-10536 MsG0080049053.01.T01:CDS 45.0%
!! ACTGGAAGGTGCAGTTTTTG+AGG + contig637end:13404-13423 MsG0080049053.01.T01:CDS 45.0%
!! TCGCTATTTCCGCGAGTTTT+GGG - contig637end:11594-11613 None:intergenic 45.0%
!! TTCGAGTGGTTTGGGTGTTT+TGG - contig637end:11652-11671 None:intergenic 45.0%
AAATACAACCATCGGCGACG+AGG + contig637end:13467-13486 MsG0080049053.01.T01:CDS 50.0%
AAATGCACGTTCGCAGCGAT+TGG - contig637end:12407-12426 None:intergenic 50.0%
AAGCGAAAACCAACCACTGC+AGG + contig637end:11755-11774 MsG0080049053.01.T01:intron 50.0%
AATACAACCATCGGCGACGA+GGG + contig637end:13468-13487 MsG0080049053.01.T01:CDS 50.0%
AATGCACGTTCGCAGCGATT+GGG - contig637end:12406-12425 None:intergenic 50.0%
ACATGGTCCCCTCTACACAT+GGG + contig637end:11879-11898 MsG0080049053.01.T01:intron 50.0%
ACCGAGTGTCACAGTTGATC+AGG + contig637end:11092-11111 MsG0080049053.01.T01:intron 50.0%
ACCTGAGTAGCAGCAGTAAC+GGG - contig637end:10580-10599 None:intergenic 50.0%
AGCGAAAACCAACCACTGCA+GGG + contig637end:11756-11775 MsG0080049053.01.T01:intron 50.0%
ATCCCAGCGTCATATTCGAG+TGG - contig637end:11666-11685 None:intergenic 50.0%
CAACAGTGGCCGTATATAGG+CGG + contig637end:11622-11641 MsG0080049053.01.T01:intron 50.0%
CATGTCAGCACCGTCAAACT+TGG - contig637end:12557-12576 None:intergenic 50.0%
CCCTTCACAATCACTTGCTC+TGG + contig637end:10333-10352 MsG0080049053.01.T01:intron 50.0%
CGATTGGGCTCAGTTGACAA+TGG - contig637end:12391-12410 None:intergenic 50.0%
GAAGGCGAAGCTGAGTTAGA+TGG + contig637end:10460-10479 MsG0080049053.01.T01:CDS 50.0%
TCCACACCCTTGCTTATCTG+CGG - contig637end:10173-10192 None:intergenic 50.0%
TGTAGAGGGGACCATGTGTT+AGG - contig637end:11876-11895 None:intergenic 50.0%
TGTGAAGGGTGAAGCAGAAG+TGG - contig637end:10322-10341 None:intergenic 50.0%
TTGGGCTCAGTTGACAATGG+GGG - contig637end:12388-12407 None:intergenic 50.0%
! AGATAAGCAAGGGTGTGGAG+TGG + contig637end:10174-10193 MsG0080049053.01.T01:CDS 50.0%
!! CGTATGGACAAACTGGTTCG+CGG - contig637end:10270-10289 None:intergenic 50.0%
!! CTGGGATCTGGTCTTGTACT+AGG + contig637end:12063-12082 MsG0080049053.01.T01:intron 50.0%
!! GTATGGACAAACTGGTTCGC+GGG - contig637end:10269-10288 None:intergenic 50.0%
!! GTCGCTATTTCCGCGAGTTT+TGG - contig637end:11595-11614 None:intergenic 50.0%
!! TTTTTAGGCCCTGCAGTGGT+TGG - contig637end:11767-11786 None:intergenic 50.0%
!!! GCAGTGGTTGGTTTTCGCTT+TGG - contig637end:11755-11774 None:intergenic 50.0%
!!! TCGCTTTGGTTTTGGCTCCT+GGG - contig637end:11741-11760 None:intergenic 50.0%
!!! TTCGCTTTGGTTTTGGCTCC+TGG - contig637end:11742-11761 None:intergenic 50.0%
CACATGGTCCCCTCTACACA+TGG + contig637end:11878-11897 MsG0080049053.01.T01:intron 55.0%
CAGACAGAGTCTTCCCCTTC+AGG - contig637end:12516-12535 None:intergenic 55.0%
CAGAGTCTTCCCCTTCAGGT+TGG - contig637end:12512-12531 None:intergenic 55.0%
CGCTGCGAACGTGCATTTGT+TGG + contig637end:12409-12428 MsG0080049053.01.T01:CDS 55.0%
GTCCCCTCTACACATGGGTT+TGG + contig637end:11884-11903 MsG0080049053.01.T01:intron 55.0%
TCCCGTTACTGCTGCTACTC+AGG + contig637end:10576-10595 MsG0080049053.01.T01:CDS 55.0%
TCCGCAGATAAGCAAGGGTG+TGG + contig637end:10169-10188 MsG0080049053.01.T01:CDS 55.0%
! GCAGTTGGGGGCAGCTTTAA+AGG + contig637end:12604-12623 MsG0080049053.01.T01:CDS 55.0%
! GCTGGGGCTCAGGTGTTTTT+AGG - contig637end:11782-11801 None:intergenic 55.0%
!!! GGTGTTTTTAGGCCCTGCAG+TGG - contig637end:11771-11790 None:intergenic 55.0%
! ACGCAGAGGTATGCTGCTGC+TGG - contig637end:11705-11724 None:intergenic 60.0%
!! GGTTTGGTTTGCTGGGGCTC+AGG - contig637end:11792-11811 None:intergenic 60.0%
GACGAGGGTCGAGCTGAGCT+AGG + contig637end:13483-13502 MsG0080049053.01.T01:CDS 65.0%
TTGGCTCCTGGGACGCTCGT+TGG - contig637end:11730-11749 None:intergenic 65.0%
!! GACGCTCGTTGGTGACGCAG+AGG - contig637end:11719-11738 None:intergenic 65.0%
AGCTCGACCCTCGTCGCCGA+TGG - contig637end:13478-13497 None:intergenic 70.0%
GCGTCACCAACGAGCGTCCC+AGG + contig637end:11721-11740 MsG0080049053.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
contig637end gene 10157 13663 10157 ID=MsG0080049053.01;Name=MsG0080049053.01
contig637end mRNA 10157 13663 10157 ID=MsG0080049053.01.T01;Parent=MsG0080049053.01;Name=MsG0080049053.01.T01;_AED=0.46;_eAED=0.55;_QI=0|0.66|0.5|1|0.66|0.5|4|148|266
contig637end exon 13292 13663 13292 ID=MsG0080049053.01.T01:exon:16179;Parent=MsG0080049053.01.T01
contig637end exon 12379 12625 12379 ID=MsG0080049053.01.T01:exon:16178;Parent=MsG0080049053.01.T01
contig637end exon 10424 10597 10424 ID=MsG0080049053.01.T01:exon:16177;Parent=MsG0080049053.01.T01
contig637end exon 10157 10312 10157 ID=MsG0080049053.01.T01:exon:16176;Parent=MsG0080049053.01.T01
contig637end CDS 10157 10312 10157 ID=MsG0080049053.01.T01:cds;Parent=MsG0080049053.01.T01
contig637end CDS 10424 10597 10424 ID=MsG0080049053.01.T01:cds;Parent=MsG0080049053.01.T01
contig637end CDS 12379 12625 12379 ID=MsG0080049053.01.T01:cds;Parent=MsG0080049053.01.T01
contig637end CDS 13292 13515 13292 ID=MsG0080049053.01.T01:cds;Parent=MsG0080049053.01.T01
contig637end three_prime_UTR 13516 13663 13516 ID=MsG0080049053.01.T01:three_prime_utr;Parent=MsG0080049053.01.T01
Gene Sequence

>MsG0080049053.01.T01

GTAACATATTTATCCGCAGATAAGCAAGGGTGTGGAGTGGTCTGTCTGATTCTGAATGCTCCAAAAATTGAAGTGCAGAAAGAAGAATGGCCAACCTTTCAATTCAACTCCCGCGAACCAGTTTGTCCATACGCAACTACTCAACCAAACGACCATACATTTAAATTTGTTTGTTCTCTTGTAGTTGTAGGAGAAGGCGAAGCTGAGTTAGATGGAACTGAGAATAAACCAAGGTTACTTAGTCTCAACAAAATCAAGGGTGTTGCCTGTGGTATTCTTGCAGCTTATGCTGTTACTTCTGCTTCATTTCCCGTTACTGCTGCTACTCAGAGACTGCCCCCATTGTCAACTGAGCCCAATCGCTGCGAACGTGCATTTGTTGGCAACACAATTGGTCAGGCAAATGGTGTGTACGACAAAGCATTAGATCTCCGGAAATGTGACTTCACAAATGAAAAATCCAACCTGAAGGGGAAGACTCTGTCTGCAGCACTAATGTCAGATGCCAAGTTTGACGGTGCTGACATGACAGAAGTTGTAATGTCAAAGGCTTATGCAGTTGGGGGCAGCTTTAAAGGTGTGGACTTCTCAAATGCAGTGTTGGATCGTGTTAATTTCGGGAAAGCAGATCTTCAGGGAGCTGTATTTAGGAACACAGTTTTGTCAGGCTCCACCTTTGACGATGCTAAACTGGAAGGTGCAGTTTTTGAGGACACTATCATTGGTTACATTGATCTCCAAAAGATATGCAGAAATACAACCATCGGCGACGAGGGTCGAGCTGAGCTAGGATGTCGATGA

Protein sequence

>MsG0080049053.01.T01

VTYLSADKQGCGVVCLILNAPKIEVQKEEWPTFQFNSREPVCPYATTQPNDHTFKFVCSLVVVGEGEAELDGTENKPRLLSLNKIKGVACGILAAYAVTSASFPVTAATQRLPPLSTEPNRCERAFVGNTIGQANGVYDKALDLRKCDFTNEKSNLKGKTLSAALMSDAKFDGADMTEVVMSKAYAVGGSFKGVDFSNAVLDRVNFGKADLQGAVFRNTVLSGSTFDDAKLEGAVFEDTIIGYIDLQKICRNTTIGDEGRAELGCR*