AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080048929.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048929.01.T01 MTR_1g116320 96.907 388 11 1 1 388 1 387 0.0 764
MsG0080048929.01.T01 MTR_1g116320 86.598 388 11 2 1 388 1 347 0.0 639
MsG0080048929.01.T01 MTR_2g007300 27.184 206 116 7 30 230 57 233 1.02e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048929.01.T01 AT1G51110 65.374 361 118 3 31 385 48 407 1.71e-169 480

Find 14 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTCTCGCTTCGTGTCTGC+TGG 0.283011 contig547end:-13382 MsG0080048929.01.T01:exon
AAGCGAGAATTTGAGGGATT+GGG 0.409134 contig547end:+13394 MsG0080048929.01.T01:intergenic
GAAGCGAGAATTTGAGGGAT+TGG 0.409696 contig547end:+13393 MsG0080048929.01.T01:intergenic
TCACTCATCCAAGCTCTTGT+TGG 0.430914 contig547end:-13310 MsG0080048929.01.T01:exon
AAGAAGAACGTCCACGTCCT+TGG 0.440262 contig547end:+13284 MsG0080048929.01.T01:intergenic
GTTGTGAATGTAAACAATAT+AGG 0.473230 contig547end:-13454 MsG0080048929.01.T01:exon
AGACACGAAGCGAGAATTTG+AGG 0.477785 contig547end:+13387 MsG0080048929.01.T01:intergenic
CAAGCTCTTGTTGGCATCCA+AGG 0.485345 contig547end:-13301 MsG0080048929.01.T01:exon
TCTGTCTGTGTCTGTAACAA+TGG 0.496912 contig547end:-13491 MsG0080048929.01.T01:exon
GACACGAAGCGAGAATTTGA+GGG 0.500687 contig547end:+13388 MsG0080048929.01.T01:intergenic
CTTGGATGCCAACAAGAGCT+TGG 0.505511 contig547end:+13302 MsG0080048929.01.T01:intergenic
ATTCTCGCTTCGTGTCTGCT+GGG 0.506359 contig547end:-13381 MsG0080048929.01.T01:exon
AGAGAGACGTTGAGTTGCTG+TGG 0.535610 contig547end:+13259 MsG0080048929.01.T01:intergenic
CTTGTTGGCATCCAAGGACG+TGG 0.563106 contig547end:-13295 MsG0080048929.01.T01:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTGAAGTTAATTTTTTTA+GGG - contig547end:12078-12097 MsG0080048929.01.T01:CDS 10.0%
!! AGAAAAACAAAATTATTAGT+TGG + contig547end:12057-12076 MsG0080048929.01.T01:intergenic 15.0%
!!! CATTTGAAGTTAATTTTTTT+AGG - contig547end:12077-12096 MsG0080048929.01.T01:CDS 15.0%
!!! TATTTTAACCTTTTTTTTGT+TGG - contig547end:13427-13446 MsG0080048929.01.T01:exon 15.0%
!!! TTTTTTTCAATAAACATAAC+TGG - contig547end:11864-11883 MsG0080048929.01.T01:intron 15.0%
!! AATAATAATAACAACCTGAA+TGG + contig547end:10568-10587 MsG0080048929.01.T01:intergenic 20.0%
!! ATAATAATAACAACCTGAAT+GGG + contig547end:10567-10586 MsG0080048929.01.T01:intergenic 20.0%
!! ATGTAAACAATTATCTTACA+AGG - contig547end:12124-12143 MsG0080048929.01.T01:intron 20.0%
!! ATTTCCTTAAATAAGAATTC+TGG - contig547end:11946-11965 MsG0080048929.01.T01:CDS 20.0%
!! TAATACTAAGTAACTACAAT+TGG - contig547end:10888-10907 MsG0080048929.01.T01:intron 20.0%
!! TACAAACACAATAAATATGA+AGG - contig547end:12449-12468 MsG0080048929.01.T01:intron 20.0%
!! TATAGGTTATAAAACAAAGT+TGG - contig547end:12804-12823 MsG0080048929.01.T01:intron 20.0%
!! TATATTATACGAATGCTTTA+TGG - contig547end:12581-12600 MsG0080048929.01.T01:intron 20.0%
!! TATTATGACGATGTTTATAT+TGG + contig547end:11628-11647 MsG0080048929.01.T01:intergenic 20.0%
!! TCATATTTATTGTGTTTGTA+AGG + contig547end:12449-12468 MsG0080048929.01.T01:intergenic 20.0%
!! TTTCCTTAAATAAGAATTCT+GGG - contig547end:11947-11966 MsG0080048929.01.T01:CDS 20.0%
!!! AGTAAGTTTTTTAGTTTAAG+AGG - contig547end:11000-11019 MsG0080048929.01.T01:intron 20.0%
!!! CTATTAACAAATTTTTGAAG+AGG + contig547end:11077-11096 MsG0080048929.01.T01:intergenic 20.0%
!!! TATTTTTTTCCTTCTTCATT+TGG - contig547end:13485-13504 MsG0080048929.01.T01:exon 20.0%
!!! TTTTTTTAGTGTATTTCAAG+AGG - contig547end:10787-10806 MsG0080048929.01.T01:intron 20.0%
! AAAGAGAAGAGAAAATAGAT+TGG + contig547end:10467-10486 MsG0080048929.01.T01:intergenic 25.0%
! AAATAATTTGATTGTCTCCT+CGG + contig547end:13202-13221 MsG0080048929.01.T01:intergenic 25.0%
! AATTATGCCACATAATTCTA+AGG - contig547end:11044-11063 MsG0080048929.01.T01:intron 25.0%
! AGTTAATATAGATAGCTTTC+TGG - contig547end:11150-11169 MsG0080048929.01.T01:CDS 25.0%
! ATCAGAAAATGACACAATAT+TGG + contig547end:10843-10862 MsG0080048929.01.T01:intergenic 25.0%
! CATTAGCAAACTTTAAACAA+TGG + contig547end:12414-12433 MsG0080048929.01.T01:intergenic 25.0%
! GTTATTAACAGCAATTTCAT+CGG - contig547end:11808-11827 MsG0080048929.01.T01:intron 25.0%
! GTTGTGAATGTAAACAATAT+AGG - contig547end:10056-10075 MsG0080048929.01.T01:exon 25.0%
! TGAACAGCTATATGATATAA+TGG + contig547end:11239-11258 MsG0080048929.01.T01:intergenic 25.0%
! TGGAAGAAATTTGAAAGAAA+AGG + contig547end:11477-11496 MsG0080048929.01.T01:intergenic 25.0%
! TGGTTAAGGTTATAAAGTAT+AGG - contig547end:12787-12806 MsG0080048929.01.T01:intron 25.0%
! TTATTAACAGCAATTTCATC+GGG - contig547end:11809-11828 MsG0080048929.01.T01:intron 25.0%
! TTATTCTAACCAAATGAAGA+AGG + contig547end:13497-13516 MsG0080048929.01.T01:intergenic 25.0%
! TTCCTTAAATAAGAATTCTG+GGG - contig547end:11948-11967 MsG0080048929.01.T01:CDS 25.0%
!! AAATAGTAGATTTTGTATGC+TGG - contig547end:13119-13138 MsG0080048929.01.T01:intron 25.0%
!! ACAAATTCAAGTTTGATTGA+GGG - contig547end:10498-10517 MsG0080048929.01.T01:CDS 25.0%
!! ATGGAAAAAGAATCCTTTTT+AGG - contig547end:11438-11457 MsG0080048929.01.T01:intron 25.0%
!! TTTTACTTGACAGAAAAAGT+AGG - contig547end:12955-12974 MsG0080048929.01.T01:intron 25.0%
!!! AATATTTTAGAGCATGGTTA+AGG - contig547end:12773-12792 MsG0080048929.01.T01:intron 25.0%
!!! AGCTTAAATATTTTAGAGCA+TGG - contig547end:12767-12786 MsG0080048929.01.T01:intron 25.0%
!!! GAAAATGGTAATTGATTTGA+AGG + contig547end:12834-12853 MsG0080048929.01.T01:intergenic 25.0%
!!! TTAAAGTTTGCTAATGTTCA+GGG - contig547end:12418-12437 MsG0080048929.01.T01:intron 25.0%
!!! TTTAAAGTTTGCTAATGTTC+AGG - contig547end:12417-12436 MsG0080048929.01.T01:intron 25.0%
AATCGTCATATCACTCAATA+TGG - contig547end:10719-10738 MsG0080048929.01.T01:intron 30.0%
AATGAGTGTTACAGATTGTT+GGG - contig547end:12310-12329 MsG0080048929.01.T01:intron 30.0%
ACTGGATATGGAACTTTAAA+TGG + contig547end:11497-11516 MsG0080048929.01.T01:intergenic 30.0%
AGCAACATATATATAGTGCA+GGG - contig547end:11743-11762 MsG0080048929.01.T01:CDS 30.0%
ATAGTCATCACTAGATTATC+AGG - contig547end:12878-12897 MsG0080048929.01.T01:intron 30.0%
ATTGCTAGCTAAATACAACA+TGG - contig547end:13275-13294 MsG0080048929.01.T01:exon 30.0%
ATTTAGCTAGCAATGATATG+TGG + contig547end:13269-13288 MsG0080048929.01.T01:intergenic 30.0%
TAGCTAAATACAACATGGAA+GGG - contig547end:13280-13299 MsG0080048929.01.T01:exon 30.0%
TAGTCATCACTAGATTATCA+GGG - contig547end:12879-12898 MsG0080048929.01.T01:intron 30.0%
TATTAACAGCAATTTCATCG+GGG - contig547end:11810-11829 MsG0080048929.01.T01:intron 30.0%
TCATGTCCTTCAATTTAAAC+AGG - contig547end:11397-11416 MsG0080048929.01.T01:intron 30.0%
TCTTTCAGAGAACATTTGTT+GGG - contig547end:10759-10778 MsG0080048929.01.T01:intron 30.0%
TGCTTTGACCAACAAAAAAA+AGG + contig547end:13438-13457 MsG0080048929.01.T01:intergenic 30.0%
TTAGGTAGGTATTATCAAGT+TGG + contig547end:10655-10674 MsG0080048929.01.T01:intergenic 30.0%
TTATTCTCTTTAGACTGTGA+CGG - contig547end:12171-12190 MsG0080048929.01.T01:intron 30.0%
! AAAAGTTTTCATTTTCACGC+AGG + contig547end:12857-12876 MsG0080048929.01.T01:intergenic 30.0%
! AAAGTTTTCATTTTCACGCA+GGG + contig547end:12856-12875 MsG0080048929.01.T01:intergenic 30.0%
! GACAAATTCAAGTTTGATTG+AGG - contig547end:10497-10516 MsG0080048929.01.T01:CDS 30.0%
! GCTGTTAATAACTTTTGTCT+AGG + contig547end:11800-11819 MsG0080048929.01.T01:intergenic 30.0%
! GTTAAGACTAGACTTTTACT+AGG - contig547end:12739-12758 MsG0080048929.01.T01:CDS 30.0%
! TAGTCTTAACCACTTATAGA+AGG + contig547end:12729-12748 MsG0080048929.01.T01:intergenic 30.0%
! TATATGTTGCTGTTAAGTCT+TGG + contig547end:11734-11753 MsG0080048929.01.T01:intergenic 30.0%
! TTCCCCAGAATTCTTATTTA+AGG + contig547end:11953-11972 MsG0080048929.01.T01:intergenic 30.0%
!!! ACGAACTAGCATTTTAATTG+AGG + contig547end:11670-11689 MsG0080048929.01.T01:intergenic 30.0%
!!! AGATTTTGTATGCTGGTTTA+AGG - contig547end:13126-13145 MsG0080048929.01.T01:intron 30.0%
!!! CGAACTAGCATTTTAATTGA+GGG + contig547end:11669-11688 MsG0080048929.01.T01:intergenic 30.0%
!!! GAACTAGCATTTTAATTGAG+GGG + contig547end:11668-11687 MsG0080048929.01.T01:intergenic 30.0%
AATACCTACCTAACACAACA+AGG - contig547end:10662-10681 MsG0080048929.01.T01:intron 35.0%
ACGTGGTTAATATCTTGCTT+GGG - contig547end:12352-12371 MsG0080048929.01.T01:intron 35.0%
ACTAGATTATCAGGGATAAG+GGG - contig547end:12887-12906 MsG0080048929.01.T01:intron 35.0%
AGAAGTAATAACTGGAACCT+GGG - contig547end:12535-12554 MsG0080048929.01.T01:intron 35.0%
AGCTTAAATGGAACTGGATA+TGG + contig547end:11509-11528 MsG0080048929.01.T01:intergenic 35.0%
ATACACAAACTGTAAACGTG+AGG + contig547end:12287-12306 MsG0080048929.01.T01:intergenic 35.0%
ATGACAAGCACAAACACAAA+CGG + contig547end:11208-11227 MsG0080048929.01.T01:intergenic 35.0%
ATGTTGGAATGTGATAAAGC+TGG - contig547end:12678-12697 MsG0080048929.01.T01:CDS 35.0%
ATTAACAGCAATTTCATCGG+GGG - contig547end:11811-11830 MsG0080048929.01.T01:intron 35.0%
ATTCAAGTCCTAGAACGTAT+AGG - contig547end:10361-10380 MsG0080048929.01.T01:intron 35.0%
ATTGTAACCTCGTACACTTT+GGG + contig547end:12981-13000 MsG0080048929.01.T01:intergenic 35.0%
ATTTGGCAAGAAGTTCATCT+TGG - contig547end:13046-13065 MsG0080048929.01.T01:intron 35.0%
CAATGAGTGTTACAGATTGT+TGG - contig547end:12309-12328 MsG0080048929.01.T01:intron 35.0%
CACTAGATTATCAGGGATAA+GGG - contig547end:12886-12905 MsG0080048929.01.T01:intron 35.0%
CAGCAACATATATATAGTGC+AGG - contig547end:11742-11761 MsG0080048929.01.T01:CDS 35.0%
CATGTGTTGAACTATTGAAC+AGG + contig547end:10696-10715 MsG0080048929.01.T01:intergenic 35.0%
CTAGCTAAATACAACATGGA+AGG - contig547end:13279-13298 MsG0080048929.01.T01:exon 35.0%
CTCTTTCAGAGAACATTTGT+TGG - contig547end:10758-10777 MsG0080048929.01.T01:intron 35.0%
CTTACACAAAATTCCAGACA+TGG + contig547end:12388-12407 MsG0080048929.01.T01:intergenic 35.0%
GAACTCGATTCAATCAGAAT+GGG - contig547end:12700-12719 MsG0080048929.01.T01:CDS 35.0%
GAATGGACAAATAAAGTACG+TGG - contig547end:12335-12354 MsG0080048929.01.T01:intron 35.0%
GATGTGAAAAATAGCGACAA+TGG + contig547end:11897-11916 MsG0080048929.01.T01:intergenic 35.0%
GGAATGTAGACAATGAAGAT+AGG - contig547end:12470-12489 MsG0080048929.01.T01:intron 35.0%
GGTCTATCATCTCATGAAAA+AGG + contig547end:10446-10465 MsG0080048929.01.T01:intergenic 35.0%
TAAATACAACATGGAAGGGA+AGG - contig547end:13284-13303 MsG0080048929.01.T01:exon 35.0%
TACCATCATTGAATCTGCAA+AGG + contig547end:13166-13185 MsG0080048929.01.T01:intergenic 35.0%
TACGTGGTTAATATCTTGCT+TGG - contig547end:12351-12370 MsG0080048929.01.T01:intron 35.0%
TAGAAGTAATAACTGGAACC+TGG - contig547end:12534-12553 MsG0080048929.01.T01:intron 35.0%
TAGCCAACCTTAGAATTATG+TGG + contig547end:11054-11073 MsG0080048929.01.T01:intergenic 35.0%
TCACTAGATTATCAGGGATA+AGG - contig547end:12885-12904 MsG0080048929.01.T01:intron 35.0%
TCTATTGCCTGTTGGAATTA+AGG + contig547end:11919-11938 MsG0080048929.01.T01:intergenic 35.0%
TGAGTTTATCTATTGCCTGT+TGG + contig547end:11927-11946 MsG0080048929.01.T01:intergenic 35.0%
TTACAGATTGTTGGGAAGAA+TGG - contig547end:12318-12337 MsG0080048929.01.T01:intron 35.0%
TTCAAGTCCTAGAACGTATA+GGG - contig547end:10362-10381 MsG0080048929.01.T01:intron 35.0%
TTCACATCCTTAATTCCAAC+AGG - contig547end:11909-11928 MsG0080048929.01.T01:intron 35.0%
TTCCTTTGCAGATTCAATGA+TGG - contig547end:13161-13180 MsG0080048929.01.T01:CDS 35.0%
TTGCAGATTCAATGATGGTA+AGG - contig547end:13166-13185 MsG0080048929.01.T01:CDS 35.0%
! ATTACGTTTTTGCACGTTCT+TGG - contig547end:13373-13392 MsG0080048929.01.T01:exon 35.0%
! CTTTCAGAGAACATTTGTTG+GGG - contig547end:10760-10779 MsG0080048929.01.T01:intron 35.0%
! GAAAGGTGATGGTAAAATTC+AGG + contig547end:10324-10343 MsG0080048929.01.T01:intergenic 35.0%
! GAATTTTACCATCACCTTTC+AGG - contig547end:10324-10343 MsG0080048929.01.T01:CDS 35.0%
! GATTCTTTTTCCATCTCCAA+TGG + contig547end:11432-11451 MsG0080048929.01.T01:intergenic 35.0%
! TTACGTTTTTGCACGTTCTT+GGG - contig547end:13374-13393 MsG0080048929.01.T01:exon 35.0%
!! ATGCCACATAATTCTAAGGT+TGG - contig547end:11048-11067 MsG0080048929.01.T01:intron 35.0%
!!! TCTCTGATCTTTTGAGACTT+TGG - contig547end:11277-11296 MsG0080048929.01.T01:intron 35.0%
AACTTCTTGCCAAATTCCAG+GGG + contig547end:13041-13060 MsG0080048929.01.T01:intergenic 40.0%
AAGCGAGAATTTGAGGGATT+GGG + contig547end:10119-10138 MsG0080048929.01.T01:intergenic 40.0%
AATTCCAGGGGATATCCAAA+TGG + contig547end:13029-13048 MsG0080048929.01.T01:intergenic 40.0%
AGAAAAGAGTCCTTGCTGAA+AGG + contig547end:12616-12635 MsG0080048929.01.T01:intergenic 40.0%
AGAAGATCCAGAACTAGAAG+AGG - contig547end:11972-11991 MsG0080048929.01.T01:CDS 40.0%
ATACTCGCACAAATGCATAG+TGG - contig547end:13228-13247 MsG0080048929.01.T01:intron 40.0%
ATGGATGATGCAGCCATAAT+TGG - contig547end:12999-13018 MsG0080048929.01.T01:CDS 40.0%
ATTCCAGGGGATATCCAAAT+GGG + contig547end:13028-13047 MsG0080048929.01.T01:intergenic 40.0%
CAAAGTGTACGAGGTTACAA+TGG - contig547end:12980-12999 MsG0080048929.01.T01:CDS 40.0%
CAGCTCTGTCAAACCTAAAA+AGG + contig547end:11454-11473 MsG0080048929.01.T01:intergenic 40.0%
CATTGTAACCTCGTACACTT+TGG + contig547end:12982-13001 MsG0080048929.01.T01:intergenic 40.0%
CCAGTTCCATTTAAGCTACT+CGG - contig547end:11512-11531 MsG0080048929.01.T01:CDS 40.0%
CTGCTGCCTGTTTAAATTGA+AGG + contig547end:11406-11425 MsG0080048929.01.T01:intergenic 40.0%
GAACTTCTTGCCAAATTCCA+GGG + contig547end:13042-13061 MsG0080048929.01.T01:intergenic 40.0%
GAAGATCCAGAACTAGAAGA+GGG - contig547end:11973-11992 MsG0080048929.01.T01:CDS 40.0%
GAGAGGGTAGAAGTAATAAC+TGG - contig547end:12527-12546 MsG0080048929.01.T01:intron 40.0%
GAGCAAAATTGAAGACGAAC+CGG + contig547end:10400-10419 MsG0080048929.01.T01:intergenic 40.0%
GCAGATGATATGGAATTCAC+AGG - contig547end:12002-12021 MsG0080048929.01.T01:CDS 40.0%
GGAACTCGATTCAATCAGAA+TGG - contig547end:12699-12718 MsG0080048929.01.T01:CDS 40.0%
GTTATTAACGCCTTTCAGCA+AGG - contig547end:12603-12622 MsG0080048929.01.T01:intron 40.0%
TAACGTAGGGGATTTCATGT+TGG - contig547end:12662-12681 MsG0080048929.01.T01:CDS 40.0%
TACGTTACATCTCCACTTCA+AGG + contig547end:12649-12668 MsG0080048929.01.T01:intergenic 40.0%
TCAAGTCCTAGAACGTATAG+GGG - contig547end:10363-10382 MsG0080048929.01.T01:intron 40.0%
TCATCTCCGAGTAGCTTAAA+TGG + contig547end:11521-11540 MsG0080048929.01.T01:intergenic 40.0%
TCTGTCTGTGTCTGTAACAA+TGG - contig547end:10019-10038 MsG0080048929.01.T01:exon 40.0%
TGAACTTCTTGCCAAATTCC+AGG + contig547end:13043-13062 MsG0080048929.01.T01:intergenic 40.0%
TGAAGTGGAGATGTAACGTA+GGG - contig547end:12649-12668 MsG0080048929.01.T01:CDS 40.0%
TGACAAGCACAAACACAAAC+GGG + contig547end:11207-11226 MsG0080048929.01.T01:intergenic 40.0%
TTGAAGTGGAGATGTAACGT+AGG - contig547end:12648-12667 MsG0080048929.01.T01:CDS 40.0%
TTTGGATATCCCCTGGAATT+TGG - contig547end:13029-13048 MsG0080048929.01.T01:intron 40.0%
! CTCATTTTCACTACAAGACC+TGG - contig547end:10531-10550 MsG0080048929.01.T01:CDS 40.0%
! GGTGATGGTAAAATTCAGGA+AGG + contig547end:10320-10339 MsG0080048929.01.T01:intergenic 40.0%
! TACGTTTTTGCACGTTCTTG+GGG - contig547end:13375-13394 MsG0080048929.01.T01:exon 40.0%
! TCATTTTCACGCAGGGAAAA+TGG + contig547end:12849-12868 MsG0080048929.01.T01:intergenic 40.0%
! TGAGTGATCCTTGTTGTGTT+AGG + contig547end:10673-10692 MsG0080048929.01.T01:intergenic 40.0%
! TGATCCTTGTTGTGTTAGGT+AGG + contig547end:10669-10688 MsG0080048929.01.T01:intergenic 40.0%
!! AAGTTTGCTAATGTTCAGGG+AGG - contig547end:12421-12440 MsG0080048929.01.T01:intron 40.0%
!! AATGGGTTGCCTTCTATAAG+TGG - contig547end:12717-12736 MsG0080048929.01.T01:CDS 40.0%
!! AGTTTGCTAATGTTCAGGGA+GGG - contig547end:12422-12441 MsG0080048929.01.T01:intron 40.0%
!! TTTAGACTGTGACGGATAGT+TGG - contig547end:12179-12198 MsG0080048929.01.T01:intron 40.0%
!!! CTAGCATTTTAATTGAGGGG+AGG + contig547end:11665-11684 MsG0080048929.01.T01:intergenic 40.0%
!!! GTGTCATTTTCTGATGCCAT+CGG - contig547end:10848-10867 MsG0080048929.01.T01:intron 40.0%
AAGTCTTTGTCCCACGAGAT+AGG + contig547end:11348-11367 MsG0080048929.01.T01:intergenic 45.0%
AATGCTGCCAATGGTCTGAT+GGG - contig547end:12208-12227 MsG0080048929.01.T01:intron 45.0%
ACCACATACTTGTCGCATTC+AGG - contig547end:11560-11579 MsG0080048929.01.T01:CDS 45.0%
AGACACGAAGCGAGAATTTG+AGG + contig547end:10126-10145 MsG0080048929.01.T01:intergenic 45.0%
AGTAAGAGAGAGAGAGAGAG+AGG - contig547end:12510-12529 MsG0080048929.01.T01:intron 45.0%
AGTCTTTGTCCCACGAGATA+GGG + contig547end:11347-11366 MsG0080048929.01.T01:intergenic 45.0%
ATATGTCTGACCCTATCTCG+TGG - contig547end:11334-11353 MsG0080048929.01.T01:intron 45.0%
CAAGTCCTAGAACGTATAGG+GGG - contig547end:10364-10383 MsG0080048929.01.T01:intron 45.0%
CCGAGTAGCTTAAATGGAAC+TGG + contig547end:11515-11534 MsG0080048929.01.T01:intergenic 45.0%
CGAGAGGGAATAAGGTGATT+AGG - contig547end:11597-11616 MsG0080048929.01.T01:intron 45.0%
CTACTCGGAGATGAAGCAAA+GGG - contig547end:11527-11546 MsG0080048929.01.T01:CDS 45.0%
CTCAATAGCCTGAAAGGTGA+TGG + contig547end:10335-10354 MsG0080048929.01.T01:intergenic 45.0%
CTTTCCTAACATGCTAACCC+AGG + contig547end:12555-12574 MsG0080048929.01.T01:intergenic 45.0%
GAAACCTTCGTATCTCGAGA+GGG - contig547end:11582-11601 MsG0080048929.01.T01:CDS 45.0%
GAAGCGAGAATTTGAGGGAT+TGG + contig547end:10120-10139 MsG0080048929.01.T01:intergenic 45.0%
GAAGTGGAGATGTAACGTAG+GGG - contig547end:12650-12669 MsG0080048929.01.T01:CDS 45.0%
GACACGAAGCGAGAATTTGA+GGG + contig547end:10125-10144 MsG0080048929.01.T01:intergenic 45.0%
GATGATGCAGCCATAATTGG+TGG - contig547end:13002-13021 MsG0080048929.01.T01:CDS 45.0%
GTAAGAGAGAGAGAGAGAGA+GGG - contig547end:12511-12530 MsG0080048929.01.T01:intron 45.0%
TAAACGTGAGGCAGAACTTG+TGG + contig547end:12275-12294 MsG0080048929.01.T01:intergenic 45.0%
TATGTCTGACCCTATCTCGT+GGG - contig547end:11335-11354 MsG0080048929.01.T01:intron 45.0%
TATTCCCTCTCGAGATACGA+AGG + contig547end:11589-11608 MsG0080048929.01.T01:intergenic 45.0%
TCACTCATCCAAGCTCTTGT+TGG - contig547end:10200-10219 MsG0080048929.01.T01:exon 45.0%
TCCAAATGGGCCACCAATTA+TGG + contig547end:13015-13034 MsG0080048929.01.T01:intergenic 45.0%
TCCTGAATGCGACAAGTATG+TGG + contig547end:11564-11583 MsG0080048929.01.T01:intergenic 45.0%
TCGTATCTCGAGAGGGAATA+AGG - contig547end:11589-11608 MsG0080048929.01.T01:intron 45.0%
TGGCTTTCTTCGTGTCTATC+AGG - contig547end:11170-11189 MsG0080048929.01.T01:CDS 45.0%
TGGTTAGAGAATGCTGCCAA+TGG - contig547end:12199-12218 MsG0080048929.01.T01:intron 45.0%
TTGCTTCTGCAGCACAAATG+TGG + contig547end:11771-11790 MsG0080048929.01.T01:intergenic 45.0%
! GACACAATATTGGTTACGCG+TGG + contig547end:10833-10852 MsG0080048929.01.T01:intergenic 45.0%
AAACAGGCAGCAGCATCCAT+TGG - contig547end:11413-11432 MsG0080048929.01.T01:intron 50.0%
AACAGCAATTTCATCGGGGG+TGG - contig547end:11814-11833 MsG0080048929.01.T01:intron 50.0%
AAGAAGAACGTCCACGTCCT+TGG + contig547end:10229-10248 MsG0080048929.01.T01:intergenic 50.0%
AAGTAGGCCCAAAGTGTACG+AGG - contig547end:12971-12990 MsG0080048929.01.T01:CDS 50.0%
AATTCTCGCTTCGTGTCTGC+TGG - contig547end:10128-10147 MsG0080048929.01.T01:exon 50.0%
ACACACCCCCTATACGTTCT+AGG + contig547end:10372-10391 MsG0080048929.01.T01:intergenic 50.0%
ACAGCAATTTCATCGGGGGT+GGG - contig547end:11815-11834 MsG0080048929.01.T01:intron 50.0%
AGCACGCTCAATAGCCTGAA+AGG + contig547end:10341-10360 MsG0080048929.01.T01:intergenic 50.0%
ATTCTCGCTTCGTGTCTGCT+GGG - contig547end:10129-10148 MsG0080048929.01.T01:exon 50.0%
CAAGCTCTTGTTGGCATCCA+AGG - contig547end:10209-10228 MsG0080048929.01.T01:exon 50.0%
CAAGTTTGATTGAGGGTCGC+TGG - contig547end:10505-10524 MsG0080048929.01.T01:CDS 50.0%
CAATGGTCTGATGGGAAAGC+AGG - contig547end:12216-12235 MsG0080048929.01.T01:intron 50.0%
CATCGGTGAGCTCAAAGTTG+AGG - contig547end:10865-10884 MsG0080048929.01.T01:intron 50.0%
CTCAACTTTGAGCTCACCGA+TGG + contig547end:10867-10886 MsG0080048929.01.T01:intergenic 50.0%
CTGCTTTCCCATCAGACCAT+TGG + contig547end:12218-12237 MsG0080048929.01.T01:intergenic 50.0%
CTGTCTGCATGTCCTTGAAG+TGG - contig547end:12634-12653 MsG0080048929.01.T01:intron 50.0%
CTTGGATGCCAACAAGAGCT+TGG + contig547end:10211-10230 MsG0080048929.01.T01:intergenic 50.0%
GAATGCTGCCAATGGTCTGA+TGG - contig547end:12207-12226 MsG0080048929.01.T01:intron 50.0%
GCTACTCGGAGATGAAGCAA+AGG - contig547end:11526-11545 MsG0080048929.01.T01:CDS 50.0%
GGAAACCTTCGTATCTCGAG+AGG - contig547end:11581-11600 MsG0080048929.01.T01:CDS 50.0%
GGTAAGGTCAGAATTAGCCG+AGG - contig547end:13182-13201 MsG0080048929.01.T01:intron 50.0%
TCGGAGATGAAGCAAAGGGT+TGG - contig547end:11531-11550 MsG0080048929.01.T01:CDS 50.0%
TGAATGGGTGATGCTGTTCC+AGG + contig547end:10552-10571 MsG0080048929.01.T01:intergenic 50.0%
TGGAACAGCATCACCCATTC+AGG - contig547end:10551-10570 MsG0080048929.01.T01:intron 50.0%
! AGAGAGACGTTGAGTTGCTG+TGG + contig547end:10254-10273 MsG0080048929.01.T01:intergenic 50.0%
! GCCATAATTGGTGGCCCATT+TGG - contig547end:13011-13030 MsG0080048929.01.T01:CDS 50.0%
! TATAGGGGGTGTGTCTGATC+CGG - contig547end:10378-10397 MsG0080048929.01.T01:intron 50.0%
!! GGAACCTGGGTTAGCATGTT+AGG - contig547end:12548-12567 MsG0080048929.01.T01:intron 50.0%
AGGGCGAGTGGCAGATGATA+TGG - contig547end:11992-12011 MsG0080048929.01.T01:CDS 55.0%
CAGAACTAGAAGAGGGCGAG+TGG - contig547end:11980-11999 MsG0080048929.01.T01:CDS 55.0%
CTTGTTGGCATCCAAGGACG+TGG - contig547end:10215-10234 MsG0080048929.01.T01:exon 55.0%
GCAGCAGCATCCATTGGAGA+TGG - contig547end:11419-11438 MsG0080048929.01.T01:intron 55.0%
GGGCTGAAGTTCTCCATGTC+TGG - contig547end:12372-12391 MsG0080048929.01.T01:intron 55.0%
GGTGGGTGTTCGAGAGGTAA+GGG - contig547end:11832-11851 MsG0080048929.01.T01:intron 55.0%
TGGCCCATTTGGATATCCCC+TGG - contig547end:13022-13041 MsG0080048929.01.T01:intron 55.0%
! TGTTCGAGAGGTAAGGGTGC+TGG - contig547end:11838-11857 MsG0080048929.01.T01:intron 55.0%
!! CACTCGCCCTCTTCTAGTTC+TGG + contig547end:11982-12001 MsG0080048929.01.T01:intergenic 55.0%
GGGTGGGTGTTCGAGAGGTA+AGG - contig547end:11831-11850 MsG0080048929.01.T01:intron 60.0%
ATCGGGGGTGGGTGTTCGAG+AGG - contig547end:11826-11845 MsG0080048929.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
contig547end gene 10001 13531 10001 ID=MsG0080048929.01;
contig547end mRNA 10001 13531 10001 ID=MsG0080048929.01.T01;Parent=MsG0080048929.01
contig547end exon 10001 10360 10001 ID=MsG0080048929.01.T01.exon;Parent=MsG0080048929.01.T01
contig547end CDS 10285 10360 10285 ID=MsG0080048929.01.T01.cds;Parent=MsG0080048929.01.T01
contig547end CDS 10457 10564 10457 ID=MsG0080048929.01.T01.cds;Parent=MsG0080048929.01.T01
contig547end exon 10457 10564 10457 ID=MsG0080048929.01.T01.exon;Parent=MsG0080048929.01.T01
contig547end CDS 11126 11208 11126 ID=MsG0080048929.01.T01.cds;Parent=MsG0080048929.01.T01
contig547end exon 11126 11208 11126 ID=MsG0080048929.01.T01.exon;Parent=MsG0080048929.01.T01
contig547end CDS 11295 11348 11295 ID=MsG0080048929.01.T01.cds;Parent=MsG0080048929.01.T01
contig547end exon 11295 11348 11295 ID=MsG0080048929.01.T01.exon;Parent=MsG0080048929.01.T01
contig547end CDS 11509 11601 11509 ID=MsG0080048929.01.T01.cds;Parent=MsG0080048929.01.T01
contig547end exon 11509 11601 11509 ID=MsG0080048929.01.T01.exon;Parent=MsG0080048929.01.T01
contig547end CDS 11685 11768 11685 ID=MsG0080048929.01.T01.cds;Parent=MsG0080048929.01.T01
contig547end exon 11685 11768 11685 ID=MsG0080048929.01.T01.exon;Parent=MsG0080048929.01.T01
contig547end CDS 11922 12113 11922 ID=MsG0080048929.01.T01.cds;Parent=MsG0080048929.01.T01
contig547end exon 11922 12113 11922 ID=MsG0080048929.01.T01.exon;Parent=MsG0080048929.01.T01
contig547end CDS 12646 12765 12646 ID=MsG0080048929.01.T01.cds;Parent=MsG0080048929.01.T01
contig547end exon 12646 12765 12646 ID=MsG0080048929.01.T01.exon;Parent=MsG0080048929.01.T01
contig547end CDS 12960 13034 12960 ID=MsG0080048929.01.T01.cds;Parent=MsG0080048929.01.T01
contig547end exon 12960 13034 12960 ID=MsG0080048929.01.T01.exon;Parent=MsG0080048929.01.T01
contig547end CDS 13133 13186 13133 ID=MsG0080048929.01.T01.cds;Parent=MsG0080048929.01.T01
contig547end exon 13133 13186 13133 ID=MsG0080048929.01.T01.exon;Parent=MsG0080048929.01.T01
contig547end CDS 13267 13494 13267 ID=MsG0080048929.01.T01.cds;Parent=MsG0080048929.01.T01
contig547end exon 13267 13531 13267 ID=MsG0080048929.01.T01.exon;Parent=MsG0080048929.01.T01
Gene Sequence

>MsG0080048929.01.T01

ATGGCTCTCACTCTCAGAGTTGTGAATGTAAACAATATAGGATTTGAGTCATGTTCACGTTGTTCAACTTTCGTTTCTCCCAATCCCTCAAATTCTCGCTTCGTGTCTGCTGGGTGTTCTAAAGTTGAGCAAATTTCAGTTGTTACTGAAGAATCTGAAAACTCACTCATCCAAGCTCTTGTTGGCATCCAAGGACGTGGACGTTCTTCTTCTCCACAGCAACTCAACGCTATTGAGCGTGCTATTCAAGTCCTAGAACGTATAGGGGGTGTGTCTGATCCGACAAATTCAAGTTTGATTGAGGGTCGCTGGCAGCTCATTTTCACTACAAGACCTGGAACAGCATCACCCATTCAGAGAACATTTGTTGGGGTTGATTTTTTTAGTGTATTTCAAGAGGTTTATCTTCAAACAAATGATCCACGCGTAACCAATATTGTGTCATTTTCTGATGCCATCGGTGAGCTCAAAGTTGAGGCAGCAGCATCCATTGGAGATGGAAAAAGAATCCTTTTTAGGTTTGACAGAGCTGCCTTTTCTTTCAAATTTCTTCCATTTAAAGTTCCATATCCAGTTCCATTTAAGCTACTCGGAGATGAAGCAAAGGGTTGGTTAGACACCACATACTTGTCGCATTCAGGAAACCTTCGTATCTCGAGAGGGAATAAGGGAACCACATTTGTGCTGCAGAAGCAAACTGAACCTAGACAAAAGTTATTAACAGCAATTTCATCGGGGGTGGGTGTTCGAGAGGCAATAGATAAACTCATTTCCTTAAATAAGAATTCTGGGGAAGAAGATCCAGAACTAGAAGAGGGCGAGTGGCAGATGATATGGAATTCACAGACTGTGACGGATAGTTGGTTAGAGAATGCTGCCAATGGTCTGATGGGAAAGCAGATTGTTGGGAAGAATGGACAAATAAAGTACGTGGTTAATATCTTGCTTGGGCTGAAGTTCTCCATGTCTGGAATTTTGTGTAAAAAAAGTAGGCCCAAAGTGTACGAGGTTACAATGGATGATGCAGCCATAATTGGTGGCCCATTTGGATATCCCCTGGAATTTGGCAAGAAGTTCATCTTGGAGATTCTATTCAATGATGGTAAGGTCAGAATTAGCCGAGGAGACAATCAAATTATTTTCGTACATACTCGCACAAATGCATAG

Protein sequence

>MsG0080048929.01.T01

MALTLRVVNVNNIGFESCSRCSTFVSPNPSNSRFVSAGCSKVEQISVVTEESENSLIQALVGIQGRGRSSSPQQLNAIERAIQVLERIGGVSDPTNSSLIEGRWQLIFTTRPGTASPIQRTFVGVDFFSVFQEVYLQTNDPRVTNIVSFSDAIGELKVEAAASIGDGKRILFRFDRAAFSFKFLPFKVPYPVPFKLLGDEAKGWLDTTYLSHSGNLRISRGNKGTTFVLQKQTEPRQKLLTAISSGVGVREAIDKLISLNKNSGEEDPELEEGEWQMIWNSQTVTDSWLENAANGLMGKQIVGKNGQIKYVVNILLGLKFSMSGILCKKSRPKVYEVTMDDAAIIGGPFGYPLEFGKKFILEILFNDGKVRISRGDNQIIFVHTRTNA*