AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580024805.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024805.01.T01 MTR_5g016810 97.082 514 10 3 1 512 1 511 0.0 1035
MsG0580024805.01.T01 MTR_5g016810 95.769 520 11 4 1 512 1 517 0.0 1027
MsG0580024805.01.T01 MTR_4g094868 68.819 542 118 17 1 512 1 521 0.0 601
MsG0580024805.01.T01 MTR_4g094868 68.508 543 119 17 1 512 1 522 0.0 600
MsG0580024805.01.T01 MTR_4g094868 73.851 348 63 11 172 512 39 365 2.21e-159 457
MsG0580024805.01.T01 MTR_7g100590 70.612 245 61 2 84 328 81 314 7.27e-99 306
MsG0580024805.01.T01 MTR_4g061200 57.864 337 102 8 1 328 1 306 2.41e-97 300
MsG0580024805.01.T01 MTR_4g061200 57.864 337 102 8 1 328 1 306 3.36e-96 300
MsG0580024805.01.T01 MTR_2g093060 78.109 201 42 1 133 331 112 312 4.08e-94 294
MsG0580024805.01.T01 MTR_2g093060 78.109 201 42 1 133 331 112 312 4.44e-94 294
MsG0580024805.01.T01 MTR_4g061200 54.303 337 99 9 1 328 1 291 1.82e-82 261
MsG0580024805.01.T01 MTR_4g061200 54.303 337 99 9 1 328 1 291 1.84e-81 261
MsG0580024805.01.T01 MTR_2g093060 73.232 198 36 2 133 328 112 294 2.21e-79 255
MsG0580024805.01.T01 MTR_7g061190 76.871 147 34 0 175 321 3 149 1.15e-70 223
MsG0580024805.01.T01 MTR_7g061190 43.529 85 45 2 135 217 55 138 5.08e-11 61.6
MsG0580024805.01.T01 MTR_1g049140 44.333 300 121 11 40 328 34 298 7.40e-52 181
MsG0580024805.01.T01 MTR_1g049140 44.521 292 113 10 41 328 52 298 1.02e-51 179
MsG0580024805.01.T01 MTR_2g098180 51.075 186 80 3 133 307 150 335 3.87e-51 182
MsG0580024805.01.T01 MTR_4g127930 55.030 169 65 3 150 307 159 327 5.23e-51 182
MsG0580024805.01.T01 MTR_5g015070 54.386 171 67 3 150 309 249 419 5.99e-51 182
MsG0580024805.01.T01 MTR_7g080460 51.031 194 83 4 133 315 243 435 1.25e-50 184
MsG0580024805.01.T01 MTR_4g065370 48.469 196 87 5 125 307 137 331 2.55e-50 181
MsG0580024805.01.T01 MTR_4g130270 51.724 174 73 3 144 306 41 214 1.24e-49 174
MsG0580024805.01.T01 MTR_3g103460 54.167 168 69 3 150 309 310 477 6.28e-49 179
MsG0580024805.01.T01 MTR_3g103460 47.297 74 37 1 151 222 410 483 2.24e-11 66.6
MsG0580024805.01.T01 MTR_8g044070 50.259 193 79 4 137 315 39 228 2.73e-48 172
MsG0580024805.01.T01 MTR_8g044070 46.154 78 40 1 152 227 156 233 3.24e-11 65.9
MsG0580024805.01.T01 MTR_4g097520 53.571 168 70 3 150 309 310 477 3.77e-48 177
MsG0580024805.01.T01 MTR_8g068510 52.632 171 67 4 150 309 131 298 4.22e-48 171
MsG0580024805.01.T01 MTR_1g049140 49.558 226 86 7 40 256 34 240 7.29e-48 166
MsG0580024805.01.T01 MTR_1g017400 52.976 168 71 3 150 309 312 479 1.93e-47 175
MsG0580024805.01.T01 MTR_8g020510 53.012 166 70 3 150 307 248 413 4.70e-47 172
MsG0580024805.01.T01 MTR_7g009410 49.718 177 75 3 150 315 65 238 2.16e-46 166
MsG0580024805.01.T01 MTR_6g011490 50.000 172 72 3 154 314 65 233 2.49e-46 166
MsG0580024805.01.T01 MTR_8g044040 50.838 179 80 2 140 310 46 224 1.22e-43 159
MsG0580024805.01.T01 MTR_8g044040 46.753 77 39 2 152 226 157 233 1.55e-11 66.6
MsG0580024805.01.T01 MTR_4g007770 48.325 209 93 5 144 344 30 231 1.52e-42 154
MsG0580024805.01.T01 MTR_8g468920 49.468 188 86 3 128 306 46 233 3.77e-42 155
MsG0580024805.01.T01 MTR_3g090510 80.000 105 21 0 181 285 163 267 6.19e-42 154
MsG0580024805.01.T01 MTR_2g460730 44.000 225 110 6 134 344 26 248 6.98e-39 145
MsG0580024805.01.T01 MTR_5g031880 51.412 177 72 4 150 315 224 397 1.50e-38 147
MsG0580024805.01.T01 MTR_7g060560 76.190 105 24 1 181 285 156 259 9.97e-38 143
MsG0580024805.01.T01 MTR_7g055620 95.455 44 2 0 227 270 6 49 9.74e-22 97.4
MsG0580024805.01.T01 MTR_7g091390 42.767 159 72 4 121 269 30 179 1.03e-20 94.7
MsG0580024805.01.T01 MTR_1g037030 77.083 48 11 0 219 266 118 165 4.23e-18 83.6
MsG0580024805.01.T01 MTR_7g091390 48.387 93 44 1 177 269 3 91 5.12e-14 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024805.01.T01 AT4G36920 69.540 348 55 7 1 332 1 313 4.67e-138 405
MsG0580024805.01.T01 AT4G36920 69.540 348 55 7 1 332 1 313 4.67e-138 405
MsG0580024805.01.T01 AT5G67180 59.706 340 66 8 1 333 1 276 4.21e-105 318
MsG0580024805.01.T01 AT5G67180 59.706 340 66 8 1 333 1 276 4.48e-105 317
MsG0580024805.01.T01 AT5G67180 60.191 314 58 6 1 309 1 252 3.85e-99 300
MsG0580024805.01.T01 AT2G28550 59.740 308 85 6 41 327 38 327 7.13e-95 296
MsG0580024805.01.T01 AT5G67180 57.931 290 55 6 1 285 1 228 3.22e-81 253
MsG0580024805.01.T01 AT2G28550 55.844 308 82 7 41 327 38 312 2.96e-80 258
MsG0580024805.01.T01 AT2G28550 59.091 264 69 6 41 283 38 283 1.86e-76 244
MsG0580024805.01.T01 AT2G28550 57.831 249 66 6 41 268 38 268 3.33e-66 215
MsG0580024805.01.T01 AT2G28550 57.831 249 66 6 41 268 38 268 3.33e-66 215
MsG0580024805.01.T01 AT5G60120 44.477 344 153 9 1 332 1 318 4.37e-63 211
MsG0580024805.01.T01 AT5G60120 44.477 344 153 9 1 332 1 318 4.37e-63 211
MsG0580024805.01.T01 AT5G60120 44.477 344 153 9 1 332 1 318 4.37e-63 211
MsG0580024805.01.T01 AT5G60120 44.767 344 152 9 1 332 1 318 2.43e-62 211
MsG0580024805.01.T01 AT5G60120 44.767 344 152 9 1 332 1 318 3.33e-62 212
MsG0580024805.01.T01 AT5G60120 62.755 196 52 2 137 332 144 318 3.68e-62 211
MsG0580024805.01.T01 AT2G28550 66.467 167 41 1 170 336 4 155 4.05e-58 194
MsG0580024805.01.T01 AT5G57390 43.165 278 121 7 81 332 22 288 3.32e-53 186
MsG0580024805.01.T01 AT5G57390 43.165 278 121 7 81 332 140 406 2.51e-52 186
MsG0580024805.01.T01 AT1G51190 51.053 190 80 4 129 307 168 355 9.00e-52 185
MsG0580024805.01.T01 AT1G72570 51.351 185 78 4 134 307 205 388 4.47e-51 180
MsG0580024805.01.T01 AT4G37750 45.701 221 104 4 150 354 280 500 1.31e-50 182
MsG0580024805.01.T01 AT4G37750 43.529 85 46 1 140 222 372 456 3.36e-11 66.2
MsG0580024805.01.T01 AT3G20840 48.969 194 87 4 133 315 162 354 1.56e-49 179
MsG0580024805.01.T01 AT2G39250 54.404 193 58 5 141 332 96 259 1.75e-48 170
MsG0580024805.01.T01 AT5G17430 48.454 194 87 4 125 307 122 313 2.03e-48 175
MsG0580024805.01.T01 AT5G17430 48.454 194 87 4 125 307 184 375 3.29e-48 176
MsG0580024805.01.T01 AT2G39250 76.636 107 25 0 141 247 96 202 4.70e-47 164
MsG0580024805.01.T01 AT3G54990 65.734 143 42 1 117 259 93 228 8.47e-44 155
MsG0580024805.01.T01 AT3G54320 53.488 172 69 2 150 310 62 233 1.01e-43 160
MsG0580024805.01.T01 AT3G54320 53.488 172 69 2 150 310 62 233 1.03e-43 160
MsG0580024805.01.T01 AT3G54990 58.757 177 52 3 117 293 93 248 1.22e-43 158
MsG0580024805.01.T01 AT5G65510 46.341 246 99 7 150 379 170 398 1.53e-43 160
MsG0580024805.01.T01 AT5G65510 46.341 246 99 7 150 379 228 456 4.31e-43 160
MsG0580024805.01.T01 AT5G65510 46.341 246 99 7 150 379 228 456 4.31e-43 160
MsG0580024805.01.T01 AT5G10510 50.761 197 82 5 150 332 227 422 1.26e-41 157
MsG0580024805.01.T01 AT5G10510 50.761 197 82 5 150 332 227 422 1.26e-41 157
MsG0580024805.01.T01 AT5G10510 50.761 197 82 5 150 332 265 460 1.82e-41 157
MsG0580024805.01.T01 AT5G10510 50.761 197 82 5 150 332 265 460 1.82e-41 157
MsG0580024805.01.T01 AT5G10510 50.761 197 82 5 150 332 250 445 1.96e-41 157
MsG0580024805.01.T01 AT1G79700 51.596 188 77 3 144 320 43 227 1.17e-39 146
MsG0580024805.01.T01 AT5G65510 51.825 137 55 3 150 275 170 306 2.08e-38 143
MsG0580024805.01.T01 AT1G16060 50.000 192 85 2 126 306 31 222 1.36e-37 141
MsG0580024805.01.T01 AT5G10510 48.969 194 87 5 150 332 227 419 2.12e-37 145
MsG0580024805.01.T01 AT5G10510 44.700 217 85 6 150 332 265 480 7.11e-35 138
MsG0580024805.01.T01 AT1G79700 48.936 188 72 4 144 320 43 217 1.82e-32 126
MsG0580024805.01.T01 AT3G54320 54.074 135 61 1 177 310 33 167 2.88e-32 127
MsG0580024805.01.T01 AT3G54320 54.074 135 61 1 177 310 33 167 2.88e-32 127
MsG0580024805.01.T01 AT1G79700 51.316 152 70 2 172 322 5 153 2.63e-28 113
MsG0580024805.01.T01 AT1G16060 55.147 136 60 1 172 306 17 152 7.32e-27 110
MsG0580024805.01.T01 AT1G79700 51.748 143 65 2 179 320 6 145 5.23e-26 106
MsG0580024805.01.T01 AT2G41710 44.654 159 72 3 121 269 40 192 1.70e-24 106
MsG0580024805.01.T01 AT2G41710 44.654 159 72 3 121 269 40 192 2.03e-24 106
MsG0580024805.01.T01 AT2G41710 43.293 164 72 4 121 269 40 197 2.43e-22 99.8
MsG0580024805.01.T01 AT3G54320 58.696 92 37 1 220 310 1 92 6.94e-20 90.5
MsG0580024805.01.T01 AT2G41710 46.667 120 50 2 160 269 112 227 1.46e-19 91.7
MsG0580024805.01.T01 AT1G16060 57.955 88 36 1 220 306 1 88 8.42e-18 82.4
MsG0580024805.01.T01 AT1G16060 57.955 88 36 1 220 306 1 88 8.42e-18 82.4
MsG0580024805.01.T01 AT1G16060 57.955 88 36 1 220 306 1 88 8.42e-18 82.4
MsG0580024805.01.T01 AT1G16060 57.955 88 36 1 220 306 1 88 8.42e-18 82.4

Find 144 sgRNAs with CRISPR-Local

Find 225 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTACCAGGTATGTTTATC+TGG 0.164819 5:+9973594 MsG0580024805.01.T01:intron
TTGTGGAAAACAAGTGTATT+TGG 0.188508 5:+9972756 MsG0580024805.01.T01:CDS
ACCAATGAGTGTTCCCAATT+TGG 0.196957 5:-9975245 None:intergenic
CACAATTTGGATTTGAGTTT+GGG 0.208325 5:+9973960 MsG0580024805.01.T01:CDS
TATGCTCTATTGGGCAGTTT+AGG 0.219491 5:+9971771 MsG0580024805.01.T01:five_prime_UTR
ATTTAAATGTGAATTTAAAA+TGG 0.226076 5:-9975125 None:intergenic
GTGATAAAAGTAAGCCAAAT+TGG 0.232972 5:+9975231 MsG0580024805.01.T01:three_prime_UTR
CCATTCCGCCAATTTGATTC+AGG 0.238529 5:-9974065 None:intergenic
CCACAATTTGGATTTGAGTT+TGG 0.249484 5:+9973959 MsG0580024805.01.T01:CDS
ATGCTCTATTGGGCAGTTTA+GGG 0.255519 5:+9971772 MsG0580024805.01.T01:five_prime_UTR
TTGCCTCGTCTATGCTCTAT+TGG 0.280376 5:+9971761 MsG0580024805.01.T01:five_prime_UTR
AGCAATAATAATCAAGCATT+TGG 0.287575 5:+9974002 MsG0580024805.01.T01:CDS
ATATATGCTGGGATCAAAAT+TGG 0.291483 5:-9973805 None:intergenic
TAACGCTGCAGACCACAATT+TGG 0.304218 5:+9973947 MsG0580024805.01.T01:CDS
TATGATAATGAACTTAATTC+TGG 0.336630 5:+9973825 MsG0580024805.01.T01:CDS
CTACTACATAGATATTATTC+TGG 0.339780 5:+9975334 MsG0580024805.01.T01:three_prime_UTR
GAAGTTGATGTTGATGAAAA+AGG 0.344176 5:+9972040 MsG0580024805.01.T01:CDS
AAATCTATGCATTTCATTAG+TGG 0.352170 5:-9974325 None:intergenic
GCTCGAATGGGTCAATTCTT+AGG 0.356813 5:+9973429 MsG0580024805.01.T01:CDS
ACATGGCACCTGAATCAAAT+TGG 0.356848 5:+9974057 MsG0580024805.01.T01:CDS
AGAGCTGCAATTAAGTTTAG+AGG 0.359998 5:+9973132 MsG0580024805.01.T01:CDS
TGAGGGTGTTGTTCAATCAT+AGG 0.361856 5:-9974363 None:intergenic
TGTGGAAAACAAGTGTATTT+GGG 0.366345 5:+9972757 MsG0580024805.01.T01:CDS
GAAGAAGAGGGTCTTATTTG+AGG 0.370931 5:-9975011 None:intergenic
TTACTTATACCACATGGTTT+AGG 0.372438 5:-9974216 None:intergenic
GATCAACAAAAGTGGCAAAC+AGG 0.376493 5:+9974939 MsG0580024805.01.T01:CDS
AAGATTGATGAAGGTGAGTT+TGG 0.381267 5:-9974296 None:intergenic
ACGGTGGTGGATTCTTCTTC+CGG 0.386725 5:+9972253 MsG0580024805.01.T01:CDS
ACCTCTATACTGAGAACTTC+TGG 0.388412 5:-9972407 None:intergenic
TATTATTGTTCATCTTGTTA+AGG 0.398825 5:+9971907 MsG0580024805.01.T01:five_prime_UTR
TTCAATCATAGGTAACCTAT+AGG 0.401676 5:-9974352 None:intergenic
ACTAATGAAATGCATAGATT+TGG 0.402036 5:+9974327 MsG0580024805.01.T01:CDS
TCACCTCAATGGTAAAGTTA+TGG 0.404672 5:-9975203 None:intergenic
GCCAAATTGGGAACACTCAT+TGG 0.407648 5:+9975244 MsG0580024805.01.T01:three_prime_UTR
GGCTTTGTAAGGGATGGATA+TGG 0.410468 5:+9974246 MsG0580024805.01.T01:CDS
GTGGATTCTTCTTCCGGTGG+TGG 0.421531 5:+9972259 MsG0580024805.01.T01:CDS
TCTTCTTCCGGTGGTGGTGG+TGG 0.422476 5:+9972265 MsG0580024805.01.T01:CDS
GTCGATGGGAGTCTCATATA+TGG 0.422592 5:+9972452 MsG0580024805.01.T01:CDS
AAGTTCATTATCATATATGC+TGG 0.427130 5:-9973817 None:intergenic
CTATATTTAGAACTTCCTCT+TGG 0.428532 5:-9973372 None:intergenic
TATCACTTCTTTCACCTCAA+TGG 0.428767 5:-9975214 None:intergenic
GCAATAATAATCAAGCATTT+GGG 0.440075 5:+9974003 MsG0580024805.01.T01:CDS
AGAGTGAGAGAGAACATTGA+AGG 0.443758 5:+9971711 MsG0580024805.01.T01:five_prime_UTR
ACACCAACCCAATGAGCTCT+TGG 0.445124 5:-9972304 None:intergenic
TCTTCCGGTGGTGGTGGTGG+TGG 0.447429 5:+9972268 MsG0580024805.01.T01:CDS
ATGTTAAATCACTTCCGATT+CGG 0.449101 5:-9974905 None:intergenic
GCAACTGCTGCAGCATCATC+AGG 0.454716 5:+9974981 MsG0580024805.01.T01:CDS
GTGGTGTATGTATGTGTCTA+TGG 0.455321 5:+9971673 MsG0580024805.01.T01:five_prime_UTR
GGAAAATTGTGAAGCATTTG+AGG 0.458096 5:-9974381 None:intergenic
AAGAGGGTCTTATTTGAGGT+GGG 0.458874 5:-9975007 None:intergenic
TGATAAAAGTAAGCCAAATT+GGG 0.460337 5:+9975232 MsG0580024805.01.T01:three_prime_UTR
TGCCTCGTCTATGCTCTATT+GGG 0.462554 5:+9971762 MsG0580024805.01.T01:five_prime_UTR
GATTCTTCTTCCGGTGGTGG+TGG 0.465665 5:+9972262 MsG0580024805.01.T01:CDS
TGCATAGATTTGGTCCCTAT+AGG 0.465996 5:+9974337 MsG0580024805.01.T01:CDS
GTTTCGAGCAGCAGCAGCAA+TGG 0.467071 5:+9974879 MsG0580024805.01.T01:CDS
AGCAGCAATGGAGGCCGAAT+CGG 0.467356 5:+9974891 MsG0580024805.01.T01:CDS
GTAACATGGATGGCTTTGTA+AGG 0.467763 5:+9974235 MsG0580024805.01.T01:CDS
TTATGAAGAGGATTTGAAGC+AGG 0.468923 5:+9973188 MsG0580024805.01.T01:CDS
TGTTTGTGATGCAGGGATTG+TGG 0.469882 5:+9972739 MsG0580024805.01.T01:intron
GACCCTCTTCTTCTCAAGGT+TGG 0.474676 5:+9975021 MsG0580024805.01.T01:CDS
TTTACCAGGTATGTTTATCT+GGG 0.478888 5:+9973595 MsG0580024805.01.T01:intron
TCAGCAATAGTTATAGAAGA+TGG 0.485881 5:+9972097 MsG0580024805.01.T01:CDS
GAAGAGGGTCTTATTTGAGG+TGG 0.487844 5:-9975008 None:intergenic
TCAATCATAGGTAACCTATA+GGG 0.489373 5:-9974351 None:intergenic
TTTCCAAGAGCTCATTGGGT+TGG 0.496635 5:+9972301 MsG0580024805.01.T01:CDS
TGGAAGATGGGAAGCTCGAA+TGG 0.497218 5:+9973416 MsG0580024805.01.T01:CDS
AGTACTCACATGAAAATTTG+AGG 0.498999 5:-9974415 None:intergenic
CCTCTACGACTCTTCTTCAT+CGG 0.503225 5:-9972376 None:intergenic
ATCATCTCAGAATCCTCTAC+AGG 0.512148 5:-9972226 None:intergenic
TCCAGAAGTTCTCAGTATAG+AGG 0.521024 5:+9972406 MsG0580024805.01.T01:CDS
CAATGTCTGATCAACAAAAG+TGG 0.521031 5:+9974931 MsG0580024805.01.T01:CDS
GTACTCACATGAAAATTTGA+GGG 0.522748 5:-9974414 None:intergenic
AATGTGAATTTAAAATGGCA+AGG 0.523528 5:-9975120 None:intergenic
TGAATCAGAAGGGTGTTCAA+TGG 0.523804 5:+9972003 MsG0580024805.01.T01:CDS
AGTTGAGATAGAGAAGAATG+TGG 0.524564 5:+9971945 MsG0580024805.01.T01:exon
AAACCATAACTTTACCATTG+AGG 0.527878 5:+9975200 MsG0580024805.01.T01:three_prime_UTR
AGAGGAAGTTCTAAATATAG+AGG 0.528159 5:+9973375 MsG0580024805.01.T01:CDS
ATTAATGTTGTTGTTCAAGA+GGG 0.529810 5:-9975077 None:intergenic
ATAAGACCCTCTTCTTCTCA+AGG 0.535452 5:+9975017 MsG0580024805.01.T01:CDS
TATTAAATGACAGAATCATC+AGG 0.536179 5:+9973924 MsG0580024805.01.T01:intron
CCTGAATCAAATTGGCGGAA+TGG 0.543236 5:+9974065 MsG0580024805.01.T01:CDS
ATGGATGGCTTTGTAAGGGA+TGG 0.546373 5:+9974240 MsG0580024805.01.T01:CDS
GTTGCTAACAAATGTGGAGG+AGG 0.549490 5:-9974963 None:intergenic
GTACTACGACGACAAAGCAC+TGG 0.549832 5:+9973345 MsG0580024805.01.T01:CDS
TGAGATGATAACAACGGTGG+TGG 0.552175 5:+9972240 MsG0580024805.01.T01:CDS
AGTTTGGCTTAGCATCCTCA+AGG 0.553874 5:-9974280 None:intergenic
TTGTTCAAGAGGGTCTCATG+AGG 0.554656 5:-9975067 None:intergenic
AAAGCAGCAATTAAATGCAA+TGG 0.555160 5:+9973768 MsG0580024805.01.T01:CDS
CTTTGCATAAATGTGGAAGA+TGG 0.555605 5:+9973403 MsG0580024805.01.T01:CDS
GAATCAAATTGGCGGAATGG+TGG 0.556618 5:+9974068 MsG0580024805.01.T01:CDS
TTTACAGAAGAACAGGTCGA+TGG 0.557696 5:+9972437 MsG0580024805.01.T01:CDS
ATCAACAAAAGTGGCAAACA+GGG 0.558457 5:+9974940 MsG0580024805.01.T01:CDS
AAGAGGGTCTCATGAGGGTG+TGG 0.558814 5:-9975061 None:intergenic
GAGTCAGTCAAACTAACAAA+CGG 0.559729 5:+9975277 MsG0580024805.01.T01:three_prime_UTR
GATGGATCGGAAGAAGAAGA+TGG 0.559991 5:+9972115 MsG0580024805.01.T01:CDS
CAGCCAACCTTGAGAAGAAG+AGG 0.562311 5:-9975024 None:intergenic
CAATATTGAAGATTATGAAG+AGG 0.562600 5:+9973176 MsG0580024805.01.T01:CDS
GAAAATTGTGAAGCATTTGA+GGG 0.565877 5:-9974380 None:intergenic
TACTGAGAACTTCTGGACCT+TGG 0.566561 5:-9972400 None:intergenic
AATTAAGTTTAGAGGAGTAG+AGG 0.566590 5:+9973140 MsG0580024805.01.T01:CDS
TCGAGCAGCAGCAGCAATGG+AGG 0.568082 5:+9974882 MsG0580024805.01.T01:CDS
AATTAATGTTGTTGTTCAAG+AGG 0.570734 5:-9975078 None:intergenic
TTACAGAAGAACAGGTCGAT+GGG 0.571585 5:+9972438 MsG0580024805.01.T01:CDS
AGTTCATTATCATATATGCT+GGG 0.572364 5:-9973816 None:intergenic
GTTGAGATAGAGAAGAATGT+GGG 0.573193 5:+9971946 MsG0580024805.01.T01:exon
TGTTCAAGAGGGTCTCATGA+GGG 0.574371 5:-9975066 None:intergenic
GGTTTAGGTAGTATATTCAC+AGG 0.579088 5:-9974201 None:intergenic
TAACATGGATGGCTTTGTAA+GGG 0.583711 5:+9974236 MsG0580024805.01.T01:CDS
TTTGCATAAATGTGGAAGAT+GGG 0.585453 5:+9973404 MsG0580024805.01.T01:CDS
AATAGTTATAGAAGATGGAT+CGG 0.593835 5:+9972102 MsG0580024805.01.T01:CDS
TCAGAAGGGTGTTCAATGGA+AGG 0.596722 5:+9972007 MsG0580024805.01.T01:CDS
TTAGATGAGCAATTTAACAA+AGG 0.599726 5:+9973308 MsG0580024805.01.T01:intron
GGAAGATGGGAAGCTCGAAT+GGG 0.600193 5:+9973417 MsG0580024805.01.T01:CDS
TGAATGACTCACCTGATCAG+AGG 0.601123 5:+9971972 MsG0580024805.01.T01:CDS
GTGGTGGATTCTTCTTCCGG+TGG 0.601398 5:+9972256 MsG0580024805.01.T01:CDS
TGGCACCTGAATCAAATTGG+CGG 0.606044 5:+9974060 MsG0580024805.01.T01:CDS
GAATGGTGGAATCAGACCTA+AGG 0.607230 5:+9974082 MsG0580024805.01.T01:CDS
ACCATGTGGTATAAGTAACA+TGG 0.608746 5:+9974221 MsG0580024805.01.T01:CDS
ACACAGCACATGCAGCTGCT+CGG 0.611926 5:+9972980 MsG0580024805.01.T01:CDS
CCAAACTCAAATCCAAATTG+TGG 0.612263 5:-9973959 None:intergenic
TCCATGTTACTTATACCACA+TGG 0.613151 5:-9974222 None:intergenic
TGTCACCACTGATCAATACA+TGG 0.617546 5:+9974040 MsG0580024805.01.T01:CDS
ACACTGAGATTGAAGCTGCA+AGG 0.619137 5:+9973626 MsG0580024805.01.T01:CDS
AATTAAATGCAATGGCAAAG+AGG 0.621562 5:+9973776 MsG0580024805.01.T01:CDS
ACAATTTGGATTTGAGTTTG+GGG 0.624070 5:+9973961 MsG0580024805.01.T01:CDS
AAATTTGAGGGGTGAAGATG+TGG 0.624965 5:-9974402 None:intergenic
AGCCAACCTTGAGAAGAAGA+GGG 0.638756 5:-9975023 None:intergenic
TACATAGAAAGAGAAACAAG+TGG 0.642246 5:+9971654 MsG0580024805.01.T01:five_prime_UTR
TGAGCATGTACAAATGAATG+CGG 0.642805 5:+9975163 MsG0580024805.01.T01:three_prime_UTR
GCAGCAGTTGCTAACAAATG+TGG 0.642916 5:-9974969 None:intergenic
GGTGTGACTTTGCATAAATG+TGG 0.644722 5:+9973396 MsG0580024805.01.T01:CDS
ATGGAGAGAATGAAGCCTTG+AGG 0.645373 5:+9974265 MsG0580024805.01.T01:CDS
TGGCAACTGAAGATTGATGA+AGG 0.653404 5:-9974305 None:intergenic
GCAGTTGCTAACAAATGTGG+AGG 0.654906 5:-9974966 None:intergenic
TGTGGTATAAGTAACATGGA+TGG 0.657805 5:+9974225 MsG0580024805.01.T01:CDS
AGAAGAGTCGTAGAGGACCA+AGG 0.658620 5:+9972383 MsG0580024805.01.T01:CDS
TACTCACATGAAAATTTGAG+GGG 0.661433 5:-9974413 None:intergenic
CCGATGAAGAAGAGTCGTAG+AGG 0.674974 5:+9972376 MsG0580024805.01.T01:CDS
CAAAGCACTGGATTTCCAAG+AGG 0.688369 5:+9973357 MsG0580024805.01.T01:CDS
AGGTGCCATGTATTGATCAG+TGG 0.699263 5:-9974045 None:intergenic
TTCTGAGATGATAACAACGG+TGG 0.706902 5:+9972237 MsG0580024805.01.T01:CDS
AATATACTACCTAAACCATG+TGG 0.721947 5:+9974207 MsG0580024805.01.T01:CDS
GGATTCTGAGATGATAACAA+CGG 0.722167 5:+9972234 MsG0580024805.01.T01:CDS
TGCCCAATAGAGCATAGACG+AGG 0.736824 5:-9971764 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTAATCAATAGAATA+AGG - Chr5:9974142-9974161 None:intergenic 10.0%
!! ATTTAAATGTGAATTTAAAA+TGG - Chr5:9975128-9975147 None:intergenic 10.0%
!! TTATTATCTATTTCATTTAT+AGG - Chr5:9973548-9973567 None:intergenic 10.0%
!! ATAACTAGCTATTTATTATT+TGG + Chr5:9972681-9972700 MsG0580024805.01.T01:intron 15.0%
!! TATACTAAATATATGTATGT+AGG - Chr5:9973070-9973089 None:intergenic 15.0%
!!! AAATTTCATTCATTCTTTTA+TGG + Chr5:9973030-9973049 MsG0580024805.01.T01:intron 15.0%
!!! ATGAATATGTTCAATTTTAA+AGG + Chr5:9974626-9974645 MsG0580024805.01.T01:intron 15.0%
!!! TATGAATTTGAATGTTTTTT+TGG + Chr5:9972713-9972732 MsG0580024805.01.T01:intron 15.0%
!! AAAAAGAGTAGTAAGATATT+TGG + Chr5:9972151-9972170 MsG0580024805.01.T01:CDS 20.0%
!! AATTACATTACATTTACCTT+AGG - Chr5:9974101-9974120 None:intergenic 20.0%
!! ATATTGTGAAGAAGATTTAA+GGG + Chr5:9972908-9972927 MsG0580024805.01.T01:intron 20.0%
!! ATTAATCAATAGAATAAGGT+TGG - Chr5:9974138-9974157 None:intergenic 20.0%
!! TACTTAAAATTGTACTTGTA+TGG + Chr5:9974502-9974521 MsG0580024805.01.T01:intron 20.0%
!! TATATTGTGAAGAAGATTTA+AGG + Chr5:9972907-9972926 MsG0580024805.01.T01:intron 20.0%
!! TATTATTGTTCATCTTGTTA+AGG + Chr5:9971907-9971926 MsG0580024805.01.T01:five_prime_UTR 20.0%
!! TTGAATTGAAATGATTATGA+AGG + Chr5:9974857-9974876 MsG0580024805.01.T01:intron 20.0%
!!! ATAATAAAAATTGATTTGGG+AGG + Chr5:9972852-9972871 MsG0580024805.01.T01:intron 20.0%
!!! TAAGATATTTGGATTTTCAA+TGG + Chr5:9972162-9972181 MsG0580024805.01.T01:CDS 20.0%
!!! TAATAAAAATTGATTTGGGA+GGG + Chr5:9972853-9972872 MsG0580024805.01.T01:intron 20.0%
!!! TATGATAATGAACTTAATTC+TGG + Chr5:9973825-9973844 MsG0580024805.01.T01:CDS 20.0%
! AAATCTATGCATTTCATTAG+TGG - Chr5:9974328-9974347 None:intergenic 25.0%
! AAGTTCATTATCATATATGC+TGG - Chr5:9973820-9973839 None:intergenic 25.0%
! AATAGTTATAGAAGATGGAT+CGG + Chr5:9972102-9972121 MsG0580024805.01.T01:CDS 25.0%
! AATATATAAAGTGCATGCTA+GGG + Chr5:9973704-9973723 MsG0580024805.01.T01:intron 25.0%
! ACTAATGAAATGCATAGATT+TGG + Chr5:9974327-9974346 MsG0580024805.01.T01:CDS 25.0%
! AGCAATAATAATCAAGCATT+TGG + Chr5:9974002-9974021 MsG0580024805.01.T01:CDS 25.0%
! AGTTCATTATCATATATGCT+GGG - Chr5:9973819-9973838 None:intergenic 25.0%
! CAATATTGAAGATTATGAAG+AGG + Chr5:9973176-9973195 MsG0580024805.01.T01:CDS 25.0%
! CTACTACATAGATATTATTC+TGG + Chr5:9975334-9975353 MsG0580024805.01.T01:three_prime_UTR 25.0%
! GACAATTTCAAGATATTGAA+AGG - Chr5:9974589-9974608 None:intergenic 25.0%
! GCAATAATAATCAAGCATTT+GGG + Chr5:9974003-9974022 MsG0580024805.01.T01:CDS 25.0%
! GGGAAAACAACAAATTAAAT+TGG - Chr5:9973673-9973692 None:intergenic 25.0%
! TAATATATAAAGTGCATGCT+AGG + Chr5:9973703-9973722 MsG0580024805.01.T01:intron 25.0%
! TATTAAATGACAGAATCATC+AGG + Chr5:9973924-9973943 MsG0580024805.01.T01:intron 25.0%
! TATTCATTACATTAGTCCTT+TGG - Chr5:9974613-9974632 None:intergenic 25.0%
! TGATAAAAGTAAGCCAAATT+GGG + Chr5:9975232-9975251 MsG0580024805.01.T01:three_prime_UTR 25.0%
! TTAGATGAGCAATTTAACAA+AGG + Chr5:9973308-9973327 MsG0580024805.01.T01:intron 25.0%
! TTTGAACACTAAAACATGTT+TGG + Chr5:9974661-9974680 MsG0580024805.01.T01:intron 25.0%
!! AAATTTTGTCAATCAGAAAC+CGG + Chr5:9972328-9972347 MsG0580024805.01.T01:CDS 25.0%
!! AATGTGAATTTAAAATGGCA+AGG - Chr5:9975123-9975142 None:intergenic 25.0%
!! AATTAATGTTGTTGTTCAAG+AGG - Chr5:9975081-9975100 None:intergenic 25.0%
!! ATTAATGTTGTTGTTCAAGA+GGG - Chr5:9975080-9975099 None:intergenic 25.0%
!! TTAGTTTGATTCAATTTACC+AGG + Chr5:9973581-9973600 MsG0580024805.01.T01:intron 25.0%
AAACCATAACTTTACCATTG+AGG + Chr5:9975200-9975219 MsG0580024805.01.T01:three_prime_UTR 30.0%
AAAGCAGCAATTAAATGCAA+TGG + Chr5:9973768-9973787 MsG0580024805.01.T01:CDS 30.0%
AAGAAGAAGAAGAAGAAGAA+AGG - Chr5:9971842-9971861 None:intergenic 30.0%
AATATACTACCTAAACCATG+TGG + Chr5:9974207-9974226 MsG0580024805.01.T01:CDS 30.0%
AATTAAATGCAATGGCAAAG+AGG + Chr5:9973776-9973795 MsG0580024805.01.T01:CDS 30.0%
AATTAAGTTTAGAGGAGTAG+AGG + Chr5:9973140-9973159 MsG0580024805.01.T01:CDS 30.0%
ACATATGAGGTAGTTAAAAG+TGG + Chr5:9972811-9972830 MsG0580024805.01.T01:intron 30.0%
AGAAGAAGAAGAAGAAAAGA+AGG - Chr5:9971838-9971857 None:intergenic 30.0%
AGGAAAAACTATGAATCAGA+AGG + Chr5:9971992-9972011 MsG0580024805.01.T01:CDS 30.0%
AGTACTCACATGAAAATTTG+AGG - Chr5:9974418-9974437 None:intergenic 30.0%
ATATATGCTGGGATCAAAAT+TGG - Chr5:9973808-9973827 None:intergenic 30.0%
ATGTTAAATCACTTCCGATT+CGG - Chr5:9974908-9974927 None:intergenic 30.0%
ATTTACCAGGTATGTTTATC+TGG + Chr5:9973594-9973613 MsG0580024805.01.T01:intron 30.0%
GGAAAAACTATGAATCAGAA+GGG + Chr5:9971993-9972012 MsG0580024805.01.T01:CDS 30.0%
GTACTCACATGAAAATTTGA+GGG - Chr5:9974417-9974436 None:intergenic 30.0%
GTGATAAAAGTAAGCCAAAT+TGG + Chr5:9975231-9975250 MsG0580024805.01.T01:three_prime_UTR 30.0%
TACATAGAAAGAGAAACAAG+TGG + Chr5:9971654-9971673 MsG0580024805.01.T01:five_prime_UTR 30.0%
TACTCACATGAAAATTTGAG+GGG - Chr5:9974416-9974435 None:intergenic 30.0%
TATCTTGAAATTGTCTCCAA+AGG + Chr5:9974594-9974613 MsG0580024805.01.T01:intron 30.0%
TCAATCATAGGTAACCTATA+GGG - Chr5:9974354-9974373 None:intergenic 30.0%
TCAGCAATAGTTATAGAAGA+TGG + Chr5:9972097-9972116 MsG0580024805.01.T01:CDS 30.0%
TGAGCTAAAGACTATTCTTT+AGG + Chr5:9974712-9974731 MsG0580024805.01.T01:intron 30.0%
TGTAAGATCAGTTACATATG+AGG + Chr5:9972798-9972817 MsG0580024805.01.T01:intron 30.0%
TGTGGAAAACAAGTGTATTT+GGG + Chr5:9972757-9972776 MsG0580024805.01.T01:CDS 30.0%
TTACTTATACCACATGGTTT+AGG - Chr5:9974219-9974238 None:intergenic 30.0%
TTCAATCATAGGTAACCTAT+AGG - Chr5:9974355-9974374 None:intergenic 30.0%
TTGTGGAAAACAAGTGTATT+TGG + Chr5:9972756-9972775 MsG0580024805.01.T01:CDS 30.0%
TTTACCAGGTATGTTTATCT+GGG + Chr5:9973595-9973614 MsG0580024805.01.T01:intron 30.0%
TTTGCATAAATGTGGAAGAT+GGG + Chr5:9973404-9973423 MsG0580024805.01.T01:CDS 30.0%
! ACAATTTGGATTTGAGTTTG+GGG + Chr5:9973961-9973980 MsG0580024805.01.T01:CDS 30.0%
! CACAATTTGGATTTGAGTTT+GGG + Chr5:9973960-9973979 MsG0580024805.01.T01:CDS 30.0%
! CTATATTTAGAACTTCCTCT+TGG - Chr5:9973375-9973394 None:intergenic 30.0%
! GAAAATTGTGAAGCATTTGA+GGG - Chr5:9974383-9974402 None:intergenic 30.0%
! GATGTTGATGAAAAAGGAAA+AGG + Chr5:9972046-9972065 MsG0580024805.01.T01:CDS 30.0%
!! AGACTATTCTTTAGGACTAT+AGG + Chr5:9974720-9974739 MsG0580024805.01.T01:intron 30.0%
!! AGAGGAAGTTCTAAATATAG+AGG + Chr5:9973375-9973394 MsG0580024805.01.T01:CDS 30.0%
!! ATAGATATTATTCTGGCTTC+TGG + Chr5:9975341-9975360 MsG0580024805.01.T01:three_prime_UTR 30.0%
!! GAAGTTGATGTTGATGAAAA+AGG + Chr5:9972040-9972059 MsG0580024805.01.T01:CDS 30.0%
!! GCGATTCTTTAAAATATACC+TGG - Chr5:9974690-9974709 None:intergenic 30.0%
!! TTGTGGCTCATTTTGTTTAA+GGG + Chr5:9973737-9973756 MsG0580024805.01.T01:intron 30.0%
!! TTTGTGGCTCATTTTGTTTA+AGG + Chr5:9973736-9973755 MsG0580024805.01.T01:intron 30.0%
!!! GCTAGGGTTTTAAATTTTTG+TGG + Chr5:9973720-9973739 MsG0580024805.01.T01:intron 30.0%
!!! GTTACTTTTTACAGAAGAAC+AGG + Chr5:9972430-9972449 MsG0580024805.01.T01:CDS 30.0%
!!! TACTTTCTCTTTTAGCTCAT+TGG + Chr5:9974448-9974467 MsG0580024805.01.T01:intron 30.0%
AAGATTGATGAAGGTGAGTT+TGG - Chr5:9974299-9974318 None:intergenic 35.0%
ACCATGTGGTATAAGTAACA+TGG + Chr5:9974221-9974240 MsG0580024805.01.T01:CDS 35.0%
ACGTGAGATATATCCATGTT+AGG + Chr5:9972586-9972605 MsG0580024805.01.T01:intron 35.0%
AGAGCTGCAATTAAGTTTAG+AGG + Chr5:9973132-9973151 MsG0580024805.01.T01:CDS 35.0%
AGTTGAGATAGAGAAGAATG+TGG + Chr5:9971945-9971964 MsG0580024805.01.T01:exon 35.0%
ATCAACAAAAGTGGCAAACA+GGG + Chr5:9974940-9974959 MsG0580024805.01.T01:CDS 35.0%
ATTTCAAACCTGCATTGCAT+TGG + Chr5:9974789-9974808 MsG0580024805.01.T01:intron 35.0%
CAATGTCTGATCAACAAAAG+TGG + Chr5:9974931-9974950 MsG0580024805.01.T01:CDS 35.0%
CCAAACTCAAATCCAAATTG+TGG - Chr5:9973962-9973981 None:intergenic 35.0%
CTAAAACATGTTTGGATTCC+AGG + Chr5:9974669-9974688 MsG0580024805.01.T01:intron 35.0%
CTTTGCATAAATGTGGAAGA+TGG + Chr5:9973403-9973422 MsG0580024805.01.T01:CDS 35.0%
GAGTCAGTCAAACTAACAAA+CGG + Chr5:9975277-9975296 MsG0580024805.01.T01:three_prime_UTR 35.0%
GGTTTAGGTAGTATATTCAC+AGG - Chr5:9974204-9974223 None:intergenic 35.0%
GTTGAGATAGAGAAGAATGT+GGG + Chr5:9971946-9971965 MsG0580024805.01.T01:exon 35.0%
TATCACTTCTTTCACCTCAA+TGG - Chr5:9975217-9975236 None:intergenic 35.0%
TATTCACAGGCTGAATTTCA+AGG - Chr5:9974191-9974210 None:intergenic 35.0%
TCACCTCAATGGTAAAGTTA+TGG - Chr5:9975206-9975225 None:intergenic 35.0%
TGAGCATGTACAAATGAATG+CGG + Chr5:9975163-9975182 MsG0580024805.01.T01:three_prime_UTR 35.0%
TGTGGTATAAGTAACATGGA+TGG + Chr5:9974225-9974244 MsG0580024805.01.T01:CDS 35.0%
TTAAGGGATAACTGATGAGA+TGG + Chr5:9972924-9972943 MsG0580024805.01.T01:intron 35.0%
TTGTCTGGGTAAATTTGTGT+AGG + Chr5:9972949-9972968 MsG0580024805.01.T01:intron 35.0%
! AGCTTCAACTATTTTACCAC+CGG - Chr5:9972350-9972369 None:intergenic 35.0%
! ATTTGAAGCAGGTGAGTTAT+GGG + Chr5:9973199-9973218 MsG0580024805.01.T01:intron 35.0%
! CCACAATTTGGATTTGAGTT+TGG + Chr5:9973959-9973978 MsG0580024805.01.T01:CDS 35.0%
! GATGAAAAAGGAAAAGGTGT+TGG + Chr5:9972052-9972071 MsG0580024805.01.T01:CDS 35.0%
! GGAAAATTGTGAAGCATTTG+AGG - Chr5:9974384-9974403 None:intergenic 35.0%
! TCATAGTTTTTCCTCTGATC+AGG - Chr5:9971986-9972005 None:intergenic 35.0%
! TCCATGTTACTTATACCACA+TGG - Chr5:9974225-9974244 None:intergenic 35.0%
! TTATGAAGAGGATTTGAAGC+AGG + Chr5:9973188-9973207 MsG0580024805.01.T01:CDS 35.0%
! TTCTTTTCCAAGAGCTCATT+GGG + Chr5:9972297-9972316 MsG0580024805.01.T01:CDS 35.0%
!! GGATTCTGAGATGATAACAA+CGG + Chr5:9972234-9972253 MsG0580024805.01.T01:CDS 35.0%
!! TAACATGGATGGCTTTGTAA+GGG + Chr5:9974236-9974255 MsG0580024805.01.T01:CDS 35.0%
!!! TAGACAGTTTTTTCCTGTAG+AGG + Chr5:9972213-9972232 MsG0580024805.01.T01:CDS 35.0%
AAAAACTGTCTAGTGACAGG+TGG - Chr5:9972205-9972224 None:intergenic 40.0%
AAATTTGAGGGGTGAAGATG+TGG - Chr5:9974405-9974424 None:intergenic 40.0%
ACATGGCACCTGAATCAAAT+TGG + Chr5:9974057-9974076 MsG0580024805.01.T01:CDS 40.0%
ACCAATGAGTGTTCCCAATT+TGG - Chr5:9975248-9975267 None:intergenic 40.0%
ACCTCTATACTGAGAACTTC+TGG - Chr5:9972410-9972429 None:intergenic 40.0%
AGAGTGAGAGAGAACATTGA+AGG + Chr5:9971711-9971730 MsG0580024805.01.T01:five_prime_UTR 40.0%
ATAAGACCCTCTTCTTCTCA+AGG + Chr5:9975017-9975036 MsG0580024805.01.T01:CDS 40.0%
ATAGACACGTCTGATCTTAG+AGG - Chr5:9972522-9972541 None:intergenic 40.0%
ATCATCTCAGAATCCTCTAC+AGG - Chr5:9972229-9972248 None:intergenic 40.0%
ATGCTCTATTGGGCAGTTTA+GGG + Chr5:9971772-9971791 MsG0580024805.01.T01:five_prime_UTR 40.0%
CAAACCCAGATAAACATACC+TGG - Chr5:9973602-9973621 None:intergenic 40.0%
CATCAGACACAATCCTAACA+TGG - Chr5:9972602-9972621 None:intergenic 40.0%
GATCAACAAAAGTGGCAAAC+AGG + Chr5:9974939-9974958 MsG0580024805.01.T01:CDS 40.0%
GGAAAAAACTGTCTAGTGAC+AGG - Chr5:9972208-9972227 None:intergenic 40.0%
GGTGTGACTTTGCATAAATG+TGG + Chr5:9973396-9973415 MsG0580024805.01.T01:CDS 40.0%
GTGGTGTATGTATGTGTCTA+TGG + Chr5:9971673-9971692 MsG0580024805.01.T01:five_prime_UTR 40.0%
TATGCTCTATTGGGCAGTTT+AGG + Chr5:9971771-9971790 MsG0580024805.01.T01:five_prime_UTR 40.0%
TCCAGAAGTTCTCAGTATAG+AGG + Chr5:9972406-9972425 MsG0580024805.01.T01:CDS 40.0%
TCTGGGTAAATTTGTGTAGG+TGG + Chr5:9972952-9972971 MsG0580024805.01.T01:intron 40.0%
TGGCAACTGAAGATTGATGA+AGG - Chr5:9974308-9974327 None:intergenic 40.0%
TGTCACCACTGATCAATACA+TGG + Chr5:9974040-9974059 MsG0580024805.01.T01:CDS 40.0%
TTACAGAAGAACAGGTCGAT+GGG + Chr5:9972438-9972457 MsG0580024805.01.T01:CDS 40.0%
TTGGTTGTGTTTGTGATGCA+GGG + Chr5:9972732-9972751 MsG0580024805.01.T01:intron 40.0%
TTTACAGAAGAACAGGTCGA+TGG + Chr5:9972437-9972456 MsG0580024805.01.T01:CDS 40.0%
TTTGGTTGTGTTTGTGATGC+AGG + Chr5:9972731-9972750 MsG0580024805.01.T01:intron 40.0%
! AAGGTTGGCTGCAGAAAAAT+GGG + Chr5:9975036-9975055 MsG0580024805.01.T01:CDS 40.0%
! CTTCTTTTCCAAGAGCTCAT+TGG + Chr5:9972296-9972315 MsG0580024805.01.T01:CDS 40.0%
! GATTTGAAGCAGGTGAGTTA+TGG + Chr5:9973198-9973217 MsG0580024805.01.T01:intron 40.0%
! GCTTCAGAGGTACAGTAATA+TGG - Chr5:9972492-9972511 None:intergenic 40.0%
! TGCATAGATTTGGTCCCTAT+AGG + Chr5:9974337-9974356 MsG0580024805.01.T01:CDS 40.0%
! TTTGAAGCAGGTGAGTTATG+GGG + Chr5:9973200-9973219 MsG0580024805.01.T01:intron 40.0%
! TTTTGTCAATCAGAAACCGG+TGG + Chr5:9972331-9972350 MsG0580024805.01.T01:CDS 40.0%
!! AAGAGGGTCTTATTTGAGGT+GGG - Chr5:9975010-9975029 None:intergenic 40.0%
!! GAAGAAGAGGGTCTTATTTG+AGG - Chr5:9975014-9975033 None:intergenic 40.0%
!! GTAACATGGATGGCTTTGTA+AGG + Chr5:9974235-9974254 MsG0580024805.01.T01:CDS 40.0%
!! TGAATCAGAAGGGTGTTCAA+TGG + Chr5:9972003-9972022 MsG0580024805.01.T01:CDS 40.0%
!! TGAGGGTGTTGTTCAATCAT+AGG - Chr5:9974366-9974385 None:intergenic 40.0%
!! TTCTGAGATGATAACAACGG+TGG + Chr5:9972237-9972256 MsG0580024805.01.T01:CDS 40.0%
!!! ACTGATGAGATGGTTTTGTC+TGG + Chr5:9972934-9972953 MsG0580024805.01.T01:intron 40.0%
!!! CTGATGAGATGGTTTTGTCT+GGG + Chr5:9972935-9972954 MsG0580024805.01.T01:intron 40.0%
ACACTGAGATTGAAGCTGCA+AGG + Chr5:9973626-9973645 MsG0580024805.01.T01:CDS 45.0%
AGCCAACCTTGAGAAGAAGA+GGG - Chr5:9975026-9975045 None:intergenic 45.0%
ATGGAGAGAATGAAGCCTTG+AGG + Chr5:9974265-9974284 MsG0580024805.01.T01:CDS 45.0%
CCATTCCGCCAATTTGATTC+AGG - Chr5:9974068-9974087 None:intergenic 45.0%
CCTCTACGACTCTTCTTCAT+CGG - Chr5:9972379-9972398 None:intergenic 45.0%
CCTGAATCAAATTGGCGGAA+TGG + Chr5:9974065-9974084 MsG0580024805.01.T01:CDS 45.0%
GAATCAAATTGGCGGAATGG+TGG + Chr5:9974068-9974087 MsG0580024805.01.T01:CDS 45.0%
GATGGATCGGAAGAAGAAGA+TGG + Chr5:9972115-9972134 MsG0580024805.01.T01:CDS 45.0%
GCAGCAGTTGCTAACAAATG+TGG - Chr5:9974972-9974991 None:intergenic 45.0%
GCAGTTGCTAACAAATGTGG+AGG - Chr5:9974969-9974988 None:intergenic 45.0%
GCCAAATTGGGAACACTCAT+TGG + Chr5:9975244-9975263 MsG0580024805.01.T01:three_prime_UTR 45.0%
GCTCGAATGGGTCAATTCTT+AGG + Chr5:9973429-9973448 MsG0580024805.01.T01:CDS 45.0%
GTCGATGGGAGTCTCATATA+TGG + Chr5:9972452-9972471 MsG0580024805.01.T01:CDS 45.0%
GTTGCTAACAAATGTGGAGG+AGG - Chr5:9974966-9974985 None:intergenic 45.0%
TAACGCTGCAGACCACAATT+TGG + Chr5:9973947-9973966 MsG0580024805.01.T01:CDS 45.0%
TACTGAGAACTTCTGGACCT+TGG - Chr5:9972403-9972422 None:intergenic 45.0%
TGAATGACTCACCTGATCAG+AGG + Chr5:9971972-9971991 MsG0580024805.01.T01:CDS 45.0%
TGAGATGATAACAACGGTGG+TGG + Chr5:9972240-9972259 MsG0580024805.01.T01:CDS 45.0%
TGCCTCGTCTATGCTCTATT+GGG + Chr5:9971762-9971781 MsG0580024805.01.T01:five_prime_UTR 45.0%
TGGCACCTGAATCAAATTGG+CGG + Chr5:9974060-9974079 MsG0580024805.01.T01:CDS 45.0%
TGTTCAAGAGGGTCTCATGA+GGG - Chr5:9975069-9975088 None:intergenic 45.0%
TGTTTGTGATGCAGGGATTG+TGG + Chr5:9972739-9972758 MsG0580024805.01.T01:intron 45.0%
TTGCCTCGTCTATGCTCTAT+TGG + Chr5:9971761-9971780 MsG0580024805.01.T01:five_prime_UTR 45.0%
TTGTTCAAGAGGGTCTCATG+AGG - Chr5:9975070-9975089 None:intergenic 45.0%
TTTCCAAGAGCTCATTGGGT+TGG + Chr5:9972301-9972320 MsG0580024805.01.T01:CDS 45.0%
! AGGTGCCATGTATTGATCAG+TGG - Chr5:9974048-9974067 None:intergenic 45.0%
! AGTTTGGCTTAGCATCCTCA+AGG - Chr5:9974283-9974302 None:intergenic 45.0%
! CAAGGTTGGCTGCAGAAAAA+TGG + Chr5:9975035-9975054 MsG0580024805.01.T01:CDS 45.0%
! GAATGGTGGAATCAGACCTA+AGG + Chr5:9974082-9974101 MsG0580024805.01.T01:CDS 45.0%
! GGCTTTGTAAGGGATGGATA+TGG + Chr5:9974246-9974265 MsG0580024805.01.T01:CDS 45.0%
!! AATTGATTTGGGAGGGAGAC+AGG + Chr5:9972860-9972879 MsG0580024805.01.T01:intron 45.0%
!! ATGGATGGCTTTGTAAGGGA+TGG + Chr5:9974240-9974259 MsG0580024805.01.T01:CDS 45.0%
!! CAAAGCACTGGATTTCCAAG+AGG + Chr5:9973357-9973376 MsG0580024805.01.T01:CDS 45.0%
!! GAAGAGGGTCTTATTTGAGG+TGG - Chr5:9975011-9975030 None:intergenic 45.0%
!! TAGAGGTATTCGTGCTTCAG+AGG - Chr5:9972505-9972524 None:intergenic 45.0%
!! TCAGAAGGGTGTTCAATGGA+AGG + Chr5:9972007-9972026 MsG0580024805.01.T01:CDS 45.0%
!! AATAATTAATTAAAAACTAT+AGG - Chr5:9973256-9973275 None:intergenic 5.0%
!! TTATATATTATTAATTGAAA+GGG - Chr5:9973693-9973712 None:intergenic 5.0%
!! TTTAATAATAAAAATTGATT+TGG + Chr5:9972848-9972867 MsG0580024805.01.T01:intron 5.0%
!! TTTATATATTATTAATTGAA+AGG - Chr5:9973694-9973713 None:intergenic 5.0%
!!! AGTATATATAATAAATTTTT+TGG + Chr5:9973084-9973103 MsG0580024805.01.T01:intron 5.0%
!!! TTAATAATAAAAATTGATTT+GGG + Chr5:9972849-9972868 MsG0580024805.01.T01:intron 5.0%
ACACCAACCCAATGAGCTCT+TGG - Chr5:9972307-9972326 None:intergenic 50.0%
AGAAGAGTCGTAGAGGACCA+AGG + Chr5:9972383-9972402 MsG0580024805.01.T01:CDS 50.0%
CAATCTCGCCAATGCAATGC+AGG - Chr5:9974800-9974819 None:intergenic 50.0%
CAGCCAACCTTGAGAAGAAG+AGG - Chr5:9975027-9975046 None:intergenic 50.0%
CCGATGAAGAAGAGTCGTAG+AGG + Chr5:9972376-9972395 MsG0580024805.01.T01:CDS 50.0%
GACCCTCTTCTTCTCAAGGT+TGG + Chr5:9975021-9975040 MsG0580024805.01.T01:CDS 50.0%
GGAAGATGGGAAGCTCGAAT+GGG + Chr5:9973417-9973436 MsG0580024805.01.T01:CDS 50.0%
GTACTACGACGACAAAGCAC+TGG + Chr5:9973345-9973364 MsG0580024805.01.T01:CDS 50.0%
TGCCCAATAGAGCATAGACG+AGG - Chr5:9971767-9971786 None:intergenic 50.0%
TGGAAGATGGGAAGCTCGAA+TGG + Chr5:9973416-9973435 MsG0580024805.01.T01:CDS 50.0%
!! ACGGTGGTGGATTCTTCTTC+CGG + Chr5:9972253-9972272 MsG0580024805.01.T01:CDS 50.0%
AAGAGGGTCTCATGAGGGTG+TGG - Chr5:9975064-9975083 None:intergenic 55.0%
ACACAGCACATGCAGCTGCT+CGG + Chr5:9972980-9972999 MsG0580024805.01.T01:CDS 55.0%
AGCAGCAATGGAGGCCGAAT+CGG + Chr5:9974891-9974910 MsG0580024805.01.T01:CDS 55.0%
GCAACTGCTGCAGCATCATC+AGG + Chr5:9974981-9975000 MsG0580024805.01.T01:CDS 55.0%
GTGGATTCTTCTTCCGGTGG+TGG + Chr5:9972259-9972278 MsG0580024805.01.T01:CDS 55.0%
GTTTCGAGCAGCAGCAGCAA+TGG + Chr5:9974879-9974898 MsG0580024805.01.T01:CDS 55.0%
! GATTCTTCTTCCGGTGGTGG+TGG + Chr5:9972262-9972281 MsG0580024805.01.T01:CDS 55.0%
!! GTGGTGGATTCTTCTTCCGG+TGG + Chr5:9972256-9972275 MsG0580024805.01.T01:CDS 55.0%
ACTTCCACCACCACCACCAC+CGG - Chr5:9972275-9972294 None:intergenic 60.0%
TCGAGCAGCAGCAGCAATGG+AGG + Chr5:9974882-9974901 MsG0580024805.01.T01:CDS 60.0%
!! TCTTCTTCCGGTGGTGGTGG+TGG + Chr5:9972265-9972284 MsG0580024805.01.T01:CDS 60.0%
!! TCTTCCGGTGGTGGTGGTGG+TGG + Chr5:9972268-9972287 MsG0580024805.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 9971617 9975362 9971617 ID=MsG0580024805.01;Name=MsG0580024805.01
Chr5 mRNA 9971617 9975362 9971617 ID=MsG0580024805.01.T01;Parent=MsG0580024805.01;Name=MsG0580024805.01.T01;_AED=0.45;_eAED=0.45;_QI=345|1|1|1|1|1|10|277|512
Chr5 exon 9971617 9972473 9971617 ID=MsG0580024805.01.T01:exon:1896;Parent=MsG0580024805.01.T01
Chr5 exon 9972753 9972778 9972753 ID=MsG0580024805.01.T01:exon:1897;Parent=MsG0580024805.01.T01
Chr5 exon 9972971 9973001 9972971 ID=MsG0580024805.01.T01:exon:1898;Parent=MsG0580024805.01.T01
Chr5 exon 9973122 9973209 9973122 ID=MsG0580024805.01.T01:exon:1899;Parent=MsG0580024805.01.T01
Chr5 exon 9973312 9973457 9973312 ID=MsG0580024805.01.T01:exon:1900;Parent=MsG0580024805.01.T01
Chr5 exon 9973603 9973647 9973603 ID=MsG0580024805.01.T01:exon:1901;Parent=MsG0580024805.01.T01
Chr5 exon 9973758 9973846 9973758 ID=MsG0580024805.01.T01:exon:1902;Parent=MsG0580024805.01.T01
Chr5 exon 9973937 9974103 9973937 ID=MsG0580024805.01.T01:exon:1903;Parent=MsG0580024805.01.T01
Chr5 exon 9974201 9974428 9974201 ID=MsG0580024805.01.T01:exon:1904;Parent=MsG0580024805.01.T01
Chr5 exon 9974879 9975362 9974879 ID=MsG0580024805.01.T01:exon:1905;Parent=MsG0580024805.01.T01
Chr5 five_prime_UTR 9971617 9971961 9971617 ID=MsG0580024805.01.T01:five_prime_utr;Parent=MsG0580024805.01.T01
Chr5 CDS 9971962 9972473 9971962 ID=MsG0580024805.01.T01:cds;Parent=MsG0580024805.01.T01
Chr5 CDS 9972753 9972778 9972753 ID=MsG0580024805.01.T01:cds;Parent=MsG0580024805.01.T01
Chr5 CDS 9972971 9973001 9972971 ID=MsG0580024805.01.T01:cds;Parent=MsG0580024805.01.T01
Chr5 CDS 9973122 9973209 9973122 ID=MsG0580024805.01.T01:cds;Parent=MsG0580024805.01.T01
Chr5 CDS 9973312 9973457 9973312 ID=MsG0580024805.01.T01:cds;Parent=MsG0580024805.01.T01
Chr5 CDS 9973603 9973647 9973603 ID=MsG0580024805.01.T01:cds;Parent=MsG0580024805.01.T01
Chr5 CDS 9973758 9973846 9973758 ID=MsG0580024805.01.T01:cds;Parent=MsG0580024805.01.T01
Chr5 CDS 9973937 9974103 9973937 ID=MsG0580024805.01.T01:cds;Parent=MsG0580024805.01.T01
Chr5 CDS 9974201 9974428 9974201 ID=MsG0580024805.01.T01:cds;Parent=MsG0580024805.01.T01
Chr5 CDS 9974879 9975085 9974879 ID=MsG0580024805.01.T01:cds;Parent=MsG0580024805.01.T01
Chr5 three_prime_UTR 9975086 9975362 9975086 ID=MsG0580024805.01.T01:three_prime_utr;Parent=MsG0580024805.01.T01
Gene Sequence

>MsG0580024805.01.T01

ATGTGGGATCTGAATGACTCACCTGATCAGAGGAAAAACTATGAATCAGAAGGGTGTTCAATGGAAGGTGATGAAGTTGAAGTTGATGTTGATGAAAAAGGAAAAGGTGTTGGATCTGTTTCAAATTCAAGTTCATCAGCAATAGTTATAGAAGATGGATCGGAAGAAGAAGATGGTAACATGATGAAGAAAAAGAGTAGTAAGATATTTGGATTTTCAATGGATGATAGTAGTGAGTGTCCACCTGTCACTAGACAGTTTTTTCCTGTAGAGGATTCTGAGATGATAACAACGGTGGTGGATTCTTCTTCCGGTGGTGGTGGTGGTGGAAGTTCTTCTTTTCCAAGAGCTCATTGGGTTGGTGTAAAATTTTGTCAATCAGAAACCGGTGGTAAAATAGTTGAAGCTTCACAACCGATGAAGAAGAGTCGTAGAGGACCAAGGTCCAGAAGTTCTCAGTATAGAGGTGTTACTTTTTACAGAAGAACAGGTCGATGGGAGTCTCATATATGGGATTGTGGAAAACAAGTGTATTTGGGTGGATTTGACACAGCACATGCAGCTGCTCGTGCATATGATAGAGCTGCAATTAAGTTTAGAGGAGTAGAGGCTGATATAAATTTCAATATTGAAGATTATGAAGAGGATTTGAAGCAGATGAGCAATTTAACAAAGGAAGAATTTGTGCATGTACTACGACGACAAAGCACTGGATTTCCAAGAGGAAGTTCTAAATATAGAGGTGTGACTTTGCATAAATGTGGAAGATGGGAAGCTCGAATGGGTCAATTCTTAGGAAAAAAGTATGTTTATCTGGGTTTGTTTGACACTGAGATTGAAGCTGCAAGGGCATATGATAAAGCAGCAATTAAATGCAATGGCAAAGAGGCTGTCACCAATTTTGATCCCAGCATATATGATAATGAACTTAATTCTGAATCATCAGGTAACGCTGCAGACCACAATTTGGATTTGAGTTTGGGGAATTCAAGTTCTAAATGTAGCAATAATAATCAAGCATTTGGGAATCAAAACACAAATGTCACCACTGATCAATACATGGCACCTGAATCAAATTGGCGGAATGGTGGAATCAGACCTAAGCCTGTGAATATACTACCTAAACCATGTGGTATAAGTAACATGGATGGCTTTGTAAGGGATGGATATGGAGAGAATGAAGCCTTGAGGATGCTAAGCCAAACTCACCTTCATCAATCTTCAGTTGCCACTAATGAAATGCATAGATTTGGTCCCTATAGGTTACCTATGATTGAACAACACCCTCAAATGCTTCACAATTTTCCACATCTTCACCCCTCAAATTTTCATGTTTCGAGCAGCAGCAGCAATGGAGGCCGAATCGGAAGTGATTTAACATTATCAATGTCTGATCAACAAAAGTGGCAAACAGGGCCTCCTCCACATTTGTTAGCAACTGCTGCAGCATCATCAGGATTCCCACCTCAAATAAGACCCTCTTCTTCTCAAGGTTGGCTGCAGAAAAATGGGTTCCACACCCTCATGAGACCCTCTTGA
Protein sequence

>MsG0580024805.01.T01

MWDLNDSPDQRKNYESEGCSMEGDEVEVDVDEKGKGVGSVSNSSSSAIVIEDGSEEEDGNMMKKKSSKIFGFSMDDSSECPPVTRQFFPVEDSEMITTVVDSSSGGGGGGSSSFPRAHWVGVKFCQSETGGKIVEASQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYDNELNSESSGNAADHNLDLSLGNSSSKCSNNNQAFGNQNTNVTTDQYMAPESNWRNGGIRPKPVNILPKPCGISNMDGFVRDGYGENEALRMLSQTHLHQSSVATNEMHRFGPYRLPMIEQHPQMLHNFPHLHPSNFHVSSSSSNGGRIGSDLTLSMSDQQKWQTGPPPHLLATAAASSGFPPQIRPSSSQGWLQKNGFHTLMRPS*