AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000550.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000550.01.T01 MTR_1g014230 100.000 69 0 0 195 263 36 104 5.84e-47 152
MsG0180000550.01.T01 MTR_1g014220 60.952 105 28 2 111 208 348 446 1.10e-28 113
MsG0180000550.01.T01 MTR_1g014220 97.619 42 0 1 37 77 144 185 2.48e-17 81.3
MsG0180000550.01.T01 MTR_1g014250 36.957 138 65 4 97 226 257 380 2.17e-17 81.3
MsG0180000550.01.T01 MTR_1g014250 39.024 123 61 3 84 198 367 483 2.96e-17 81.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000550.01.T01 AT5G10810 75.000 68 17 0 195 262 38 105 1.69e-33 118
MsG0180000550.01.T01 AT5G10820 49.565 115 39 3 89 190 376 484 1.93e-23 99.4
MsG0180000550.01.T01 AT1G79710 40.870 115 61 2 86 196 368 479 3.47e-19 87.0
MsG0180000550.01.T01 AT1G79710 40.870 115 61 2 86 196 368 479 3.47e-19 87.0
MsG0180000550.01.T01 AT5G25050 34.752 141 70 4 80 213 362 487 6.25e-14 71.6
MsG0180000550.01.T01 AT5G25040 36.441 118 58 3 80 190 360 467 7.72e-12 65.5
MsG0180000550.01.T01 AT5G25040 36.441 118 58 3 80 190 213 320 7.97e-12 64.7
MsG0180000550.01.T01 AT5G25040 36.441 118 58 3 80 190 385 492 8.53e-12 65.1

Find 72 sgRNAs with CRISPR-Local

Find 564 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATTTAATTGCTAAAATTT+TGG 0.074131 1:-7708210 None:intergenic
CTTTCAACATTTGAAGAAAT+TGG 0.132075 1:+7708172 MsG0180000550.01.T01:CDS
TTCTGGTTTGGTGCTCTTCT+TGG 0.210178 1:+7699552 MsG0180000550.01.T01:CDS
TATCCTTGTCAAGTGTTCTA+TGG 0.259897 1:+7708413 MsG0180000550.01.T01:three_prime_UTR
TAGATTTGTTACACTTGTTT+TGG 0.260439 1:+7701964 MsG0180000550.01.T01:CDS
GGTTTCTTTGTTCATCATCT+TGG 0.287418 1:+7699588 MsG0180000550.01.T01:CDS
ACTCCAGCAACGACAAAATA+AGG 0.315707 1:-7699345 None:intergenic
ATAAGAATCACAGGCAAATA+AGG 0.317569 1:+7701747 MsG0180000550.01.T01:intron
TTGGTGGCCTTATATCAAAA+TGG 0.333437 1:+7701858 MsG0180000550.01.T01:CDS
CTTAATCCACTCTCGATCAT+AGG 0.344190 1:-7708141 None:intergenic
TTCTTTACTTGCAGTTATGA+TGG 0.351370 1:+7708098 MsG0180000550.01.T01:intron
TTTCTGAAACAAATGACTAT+TGG 0.358160 1:+7708371 MsG0180000550.01.T01:three_prime_UTR
TGTTCATCATCTTGGTCCTC+AGG 0.362448 1:+7699596 MsG0180000550.01.T01:CDS
CTATGATCGAGAGTGGATTA+AGG 0.376363 1:+7708142 MsG0180000550.01.T01:CDS
AATGTTCCTTCAATTCCTAA+TGG 0.382788 1:-7701806 None:intergenic
TTTGTCGTTGCTGGAGTTGT+TGG 0.416881 1:+7699351 MsG0180000550.01.T01:CDS
AGGAATAGTATTGAGGTTCC+AGG 0.421524 1:+7699496 MsG0180000550.01.T01:CDS
CAGCTAAATAGTACAAGATA+AGG 0.431445 1:-7708464 None:intergenic
TCCTAATGTTGGGCCTTATG+AGG 0.433740 1:+7701997 MsG0180000550.01.T01:CDS
TCCTCATAAGGCCCAACATT+AGG 0.441850 1:-7701998 None:intergenic
TAAGAGATATTTCTGACGGC+TGG 0.446674 1:-7707078 None:intergenic
TGGTGGCCTTATATCAAAAT+GGG 0.456978 1:+7701859 MsG0180000550.01.T01:CDS
TTTGTGCTTAGTACCATCAT+AGG 0.457654 1:-7701776 None:intergenic
TGCGGCGTTGATGTGTTTGT+TGG 0.458780 1:+7699421 MsG0180000550.01.T01:CDS
AGCACAAAACTATGTCCATT+AGG 0.463739 1:+7701791 MsG0180000550.01.T01:CDS
CTATGTCCATTAGGAATTGA+AGG 0.463884 1:+7701800 MsG0180000550.01.T01:CDS
AAATATCTCTTATGATATCA+TGG 0.475878 1:+7707089 MsG0180000550.01.T01:CDS
GAAGGAATCAACTCCTCATA+AGG 0.481908 1:-7702010 None:intergenic
CTTCTTGGTTATCTTGCTAG+TGG 0.487565 1:+7699567 MsG0180000550.01.T01:CDS
TGAGGAGTTGATTCCTTCTG+AGG 0.491264 1:+7702015 MsG0180000550.01.T01:CDS
CAATTTCTTCAAATGTTGAA+AGG 0.494842 1:-7708171 None:intergenic
CTGTGGGAGGTGAGTGAGTG+TGG 0.497928 1:+7699397 MsG0180000550.01.T01:CDS
CTGATTTGCAGAGTTTGTGT+GGG 0.501920 1:+7699524 MsG0180000550.01.T01:CDS
AATCAGTTCTAGTAACATGA+AGG 0.503411 1:-7701903 None:intergenic
CTATTGATGCTTGTATTGCA+AGG 0.511611 1:+7699476 MsG0180000550.01.T01:CDS
GTCTGCTACGATTGTTGCTG+TGG 0.514938 1:+7699380 MsG0180000550.01.T01:CDS
TTAATCCACTCTCGATCATA+GGG 0.515090 1:-7708140 None:intergenic
CTCATTTCACAAACCTCAGA+AGG 0.515142 1:-7702028 None:intergenic
TATTGCAAGGAATAGTATTG+AGG 0.520684 1:+7699489 MsG0180000550.01.T01:CDS
CTCTGCAAATCAGCCAACCC+TGG 0.522490 1:-7699514 None:intergenic
GCTGATTTGCAGAGTTTGTG+TGG 0.530743 1:+7699523 MsG0180000550.01.T01:CDS
GAAGAACTTGTCTGTTATGT+CGG 0.539343 1:+7708250 MsG0180000550.01.T01:three_prime_UTR
AATAAGGTGGATGCCTATGA+TGG 0.543915 1:+7701763 MsG0180000550.01.T01:CDS
ATGTGTATTGATAGCATTGG+TGG 0.544527 1:+7701842 MsG0180000550.01.T01:CDS
TAACAGACAAGTTCTTCCCT+TGG 0.551586 1:-7708244 None:intergenic
ATGACTATTGGCAATTAGCA+TGG 0.553974 1:+7708383 MsG0180000550.01.T01:three_prime_UTR
TAGTATTGAGGTTCCAGGGT+TGG 0.564531 1:+7699501 MsG0180000550.01.T01:CDS
GCATATGTGGACTGTATGAA+AGG 0.565109 1:+7707037 MsG0180000550.01.T01:CDS
CGTTGCTGGAGTTGTTGGAA+CGG 0.568419 1:+7699356 MsG0180000550.01.T01:CDS
TATCAAGCAACATAGCCATC+GGG 0.569162 1:-7708280 None:intergenic
TCTGCTACGATTGTTGCTGT+GGG 0.569735 1:+7699381 MsG0180000550.01.T01:CDS
ATATCAAGCAACATAGCCAT+CGG 0.572845 1:-7708281 None:intergenic
AGATAAGGATTTGTTTAACA+AGG 0.574289 1:-7708449 None:intergenic
ATCATAAGAGATATTTCTGA+CGG 0.580337 1:-7707082 None:intergenic
ATCAGTTCTAGTAACATGAA+GGG 0.581853 1:-7701902 None:intergenic
TTTCCAGTAATGGGATTCGT+CGG 0.589883 1:+7699319 None:intergenic
CCAGTAATGGGATTCGTCGG+AGG 0.590065 1:+7699322 None:intergenic
ACTTTCCCTATGATCGAGAG+TGG 0.592959 1:+7708135 MsG0180000550.01.T01:CDS
GAGGTGAGTGAGTGTGGTTG+CGG 0.598473 1:+7699403 MsG0180000550.01.T01:CDS
TTAATGTGTATTGATAGCAT+TGG 0.600486 1:+7701839 MsG0180000550.01.T01:CDS
AGAATCACAGGCAAATAAGG+TGG 0.602440 1:+7701750 MsG0180000550.01.T01:intron
GGAATAGTATTGAGGTTCCA+GGG 0.603259 1:+7699497 MsG0180000550.01.T01:CDS
GCTACGATTGTTGCTGTGGG+AGG 0.603973 1:+7699384 MsG0180000550.01.T01:CDS
GATCTCTACAACTTCATAGA+CGG 0.620195 1:+7707111 MsG0180000550.01.T01:CDS
AATGTAAAGAAAATCACCAA+GGG 0.632124 1:+7708228 MsG0180000550.01.T01:three_prime_UTR
ACTGTATGAAAGGAAACTGA+AGG 0.645635 1:+7707047 MsG0180000550.01.T01:CDS
GTGGCCTTATATCAAAATGG+GGG 0.660274 1:+7701861 MsG0180000550.01.T01:CDS
GGTGGCCTTATATCAAAATG+GGG 0.667764 1:+7701860 MsG0180000550.01.T01:CDS
TAGCCATAGAACACTTGACA+AGG 0.680657 1:-7708416 None:intergenic
TATGTCGGCTATACTCCCGA+TGG 0.682811 1:+7708265 MsG0180000550.01.T01:three_prime_UTR
AAATGTAAAGAAAATCACCA+AGG 0.692225 1:+7708227 MsG0180000550.01.T01:three_prime_UTR
TGGCCTTATATCAAAATGGG+GGG 0.715091 1:+7701862 MsG0180000550.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTTTTTT+TGG + Chr1:7705366-7705385 MsG0180000550.01.T01:intron 0.0%
!! AATAATACGAAAAAATAATA+AGG - Chr1:7706753-7706772 None:intergenic 10.0%
!! ATAATACGAAAAAATAATAA+GGG - Chr1:7706752-7706771 None:intergenic 10.0%
!! ATTACATTATATTATAAGTA+TGG - Chr1:7703026-7703045 None:intergenic 10.0%
!! TACAAAATAAGAAAAAATAA+AGG - Chr1:7702705-7702724 None:intergenic 10.0%
!! TATTGATAAATAAAATGTTT+AGG + Chr1:7699700-7699719 MsG0180000550.01.T01:intron 10.0%
!!! AATACAATTAATCATTTTAT+TGG + Chr1:7704275-7704294 MsG0180000550.01.T01:intron 10.0%
!!! TATTTTTTCTTATTTTGTAA+AGG + Chr1:7702706-7702725 MsG0180000550.01.T01:intron 10.0%
!! AAAAAAAAAAGTCTTAAACT+AGG - Chr1:7703849-7703868 None:intergenic 15.0%
!! AAACATAAAGAAAAAAGTTA+TGG - Chr1:7702797-7702816 None:intergenic 15.0%
!! AAATCTATAAGAAAAAGAAA+TGG - Chr1:7701485-7701504 None:intergenic 15.0%
!! AGAAAACAAATATCTATTTA+TGG - Chr1:7703101-7703120 None:intergenic 15.0%
!! ATTCTTTCAAATTTCAAATT+AGG + Chr1:7704691-7704710 MsG0180000550.01.T01:intron 15.0%
!! ATTTGACAAAAAAATGATAT+TGG + Chr1:7703237-7703256 MsG0180000550.01.T01:intron 15.0%
!! CCTTATTCTTATAATAAAAT+TGG + Chr1:7706397-7706416 MsG0180000550.01.T01:intron 15.0%
!! TAACAAAAGATAAATAAAGT+CGG + Chr1:7700949-7700968 MsG0180000550.01.T01:intron 15.0%
!! TCATCAAATTAAATTATTCA+TGG + Chr1:7703932-7703951 MsG0180000550.01.T01:intron 15.0%
!! TGTTTAAATATTATGATGTT+TGG + Chr1:7706434-7706453 MsG0180000550.01.T01:intron 15.0%
!! TTTGACAAAAAAATGATATT+GGG + Chr1:7703238-7703257 MsG0180000550.01.T01:intron 15.0%
!!! AAAATGATTTTTTTTTAACG+TGG + Chr1:7705727-7705746 MsG0180000550.01.T01:intron 15.0%
!!! AACTTTTTTCTTTATGTTTT+GGG + Chr1:7702798-7702817 MsG0180000550.01.T01:intron 15.0%
!!! AAGAAACAATTATTTTAAGA+TGG - Chr1:7704097-7704116 None:intergenic 15.0%
!!! AAGTTTTTGTTTTATAGTTA+AGG + Chr1:7702371-7702390 MsG0180000550.01.T01:intron 15.0%
!!! ACATTTAATTGCTAAAATTT+TGG - Chr1:7708213-7708232 None:intergenic 15.0%
!!! AGTTTTTGTTTTATAGTTAA+GGG + Chr1:7702372-7702391 MsG0180000550.01.T01:intron 15.0%
!!! ATAAGATTTTTACATTTAAC+AGG + Chr1:7702187-7702206 MsG0180000550.01.T01:intron 15.0%
!!! ATTTAATTGCTAAAATTTTG+GGG - Chr1:7708211-7708230 None:intergenic 15.0%
!!! CATTTAATTGCTAAAATTTT+GGG - Chr1:7708212-7708231 None:intergenic 15.0%
!!! CCAATTTTATTATAAGAATA+AGG - Chr1:7706400-7706419 None:intergenic 15.0%
!!! CTAATACTTTTTTTTTTTGT+TGG + Chr1:7702821-7702840 MsG0180000550.01.T01:intron 15.0%
!!! CTGATTAAATACATTTTTTA+GGG + Chr1:7700477-7700496 MsG0180000550.01.T01:intron 15.0%
!!! TAACTTTTTTCTTTATGTTT+TGG + Chr1:7702797-7702816 MsG0180000550.01.T01:intron 15.0%
!!! TATTTTCTTGTTTTTGTTTT+TGG + Chr1:7704916-7704935 MsG0180000550.01.T01:intron 15.0%
!!! TGATTAAATACATTTTTTAG+GGG + Chr1:7700478-7700497 MsG0180000550.01.T01:intron 15.0%
!!! TTTATTTTATTGTATGCATT+TGG + Chr1:7704889-7704908 MsG0180000550.01.T01:intron 15.0%
!!! TTTTAGATAAATTTCTGAAA+AGG - Chr1:7706078-7706097 None:intergenic 15.0%
!! AAATATCTCTTATGATATCA+TGG + Chr1:7707089-7707108 MsG0180000550.01.T01:CDS 20.0%
!! AACAAAAGAGAAAAAGTAAA+TGG + Chr1:7707483-7707502 MsG0180000550.01.T01:intron 20.0%
!! AAGTAAATGAATAATCATTC+AGG - Chr1:7705004-7705023 None:intergenic 20.0%
!! AAGTATCAACAAAGAATAAA+GGG - Chr1:7706964-7706983 None:intergenic 20.0%
!! AATAACTTATTCTTGAATCA+TGG - Chr1:7707551-7707570 None:intergenic 20.0%
!! AATAAGGTGAAAACAAATTA+TGG + Chr1:7701025-7701044 MsG0180000550.01.T01:intron 20.0%
!! AATAATGTACTTTATGGATT+TGG + Chr1:7703443-7703462 MsG0180000550.01.T01:intron 20.0%
!! AATGATGAGATTTATTGTTA+TGG + Chr1:7705916-7705935 MsG0180000550.01.T01:intron 20.0%
!! ACATAAAAAGAAAGAAACTT+GGG - Chr1:7705974-7705993 None:intergenic 20.0%
!! AGAAGTTTGAATTAGAATAA+TGG - Chr1:7704778-7704797 None:intergenic 20.0%
!! CAAAATAAACACAAACTTTA+CGG - Chr1:7706521-7706540 None:intergenic 20.0%
!! CAATACAATAATGTACTTTA+TGG + Chr1:7703437-7703456 MsG0180000550.01.T01:intron 20.0%
!! CAATATTCTTACAAATGAAA+GGG - Chr1:7702332-7702351 None:intergenic 20.0%
!! GTGAGAAAAATAATAAATGT+TGG - Chr1:7704170-7704189 None:intergenic 20.0%
!! GTTAAAACCAAAATATTACA+AGG - Chr1:7705462-7705481 None:intergenic 20.0%
!! TAAAATAAAAACCAATAGAG+TGG - Chr1:7703983-7704002 None:intergenic 20.0%
!! TACATAAAAAGAAAGAAACT+TGG - Chr1:7705975-7705994 None:intergenic 20.0%
!! TATCTTAAATTATGATTGAC+TGG - Chr1:7706334-7706353 None:intergenic 20.0%
!! TCAAATGAAAATTAAGAGTA+TGG + Chr1:7707737-7707756 MsG0180000550.01.T01:intron 20.0%
!! TCAATATTCTTACAAATGAA+AGG - Chr1:7702333-7702352 None:intergenic 20.0%
!! TGGAAAAAAAAATAGTAAGA+AGG + Chr1:7703952-7703971 MsG0180000550.01.T01:intron 20.0%
!! TTAGGTTTATGAAATTAGTT+CGG + Chr1:7699943-7699962 MsG0180000550.01.T01:intron 20.0%
!! TTATCAAAAGTGATTTAGTT+TGG + Chr1:7703576-7703595 MsG0180000550.01.T01:intron 20.0%
!! TTGAATACAAATTGTAAGTT+CGG - Chr1:7700772-7700791 None:intergenic 20.0%
!! TTGTACTTATATAATGCTTT+GGG + Chr1:7702952-7702971 MsG0180000550.01.T01:intron 20.0%
!!! AAACAATTATTTTAAGATGG+AGG - Chr1:7704094-7704113 None:intergenic 20.0%
!!! AAAGATTAGTTATCGTTAAA+CGG + Chr1:7704009-7704028 MsG0180000550.01.T01:intron 20.0%
!!! AAAGTATCAACAAAGAATAA+AGG - Chr1:7706768-7706787 None:intergenic 20.0%
!!! AACAATTATTTTAAGATGGA+GGG - Chr1:7704093-7704112 None:intergenic 20.0%
!!! AGTAAATGAACACAAATTTT+AGG - Chr1:7705084-7705103 None:intergenic 20.0%
!!! ATAGTATCTTGTTTATGATT+CGG - Chr1:7703901-7703920 None:intergenic 20.0%
!!! ATGTATATGATGTGATTTTA+AGG - Chr1:7706172-7706191 None:intergenic 20.0%
!!! ATTCTTTGTTGATACTTTTA+GGG + Chr1:7706770-7706789 MsG0180000550.01.T01:intron 20.0%
!!! ATTTTTACATTTAACAGGAA+TGG + Chr1:7702192-7702211 MsG0180000550.01.T01:intron 20.0%
!!! CAAATGAAAATTAAGAGTAT+GGG + Chr1:7707738-7707757 MsG0180000550.01.T01:intron 20.0%
!!! CAGATTAGATATTAGTTTAT+CGG - Chr1:7705315-7705334 None:intergenic 20.0%
!!! CTTAATTTTCATTTGATTCA+TGG - Chr1:7707733-7707752 None:intergenic 20.0%
!!! CTTTTAACATATAAGTACTT+AGG - Chr1:7701407-7701426 None:intergenic 20.0%
!!! GAATAATGTATGTTGATTAA+AGG + Chr1:7704381-7704400 MsG0180000550.01.T01:intron 20.0%
!!! GATCATGTTAATCATTTTTT+AGG + Chr1:7699925-7699944 MsG0180000550.01.T01:intron 20.0%
!!! GATTAAATACATTTTTTAGG+GGG + Chr1:7700479-7700498 MsG0180000550.01.T01:intron 20.0%
!!! GCTGATTAAATACATTTTTT+AGG + Chr1:7700476-7700495 MsG0180000550.01.T01:intron 20.0%
!!! GTTAGAAATTCACTTTTTTA+AGG - Chr1:7703208-7703227 None:intergenic 20.0%
!!! TATATGGTTTTCATTAATTG+TGG + Chr1:7705562-7705581 MsG0180000550.01.T01:intron 20.0%
!!! TATCAAAAGTGATTTAGTTT+GGG + Chr1:7703577-7703596 MsG0180000550.01.T01:intron 20.0%
!!! TATTCTTTGTTGATACTTTT+AGG + Chr1:7706769-7706788 MsG0180000550.01.T01:intron 20.0%
!!! TATTTTCTAGGTTGTTAATA+GGG + Chr1:7706668-7706687 MsG0180000550.01.T01:intron 20.0%
!!! TCTTTTTGTTTTAAATGAAG+TGG + Chr1:7703612-7703631 MsG0180000550.01.T01:intron 20.0%
!!! TTATTTTCTAGGTTGTTAAT+AGG + Chr1:7706667-7706686 MsG0180000550.01.T01:intron 20.0%
!!! TTCTGGAAAATATAGAAATA+AGG + Chr1:7701009-7701028 MsG0180000550.01.T01:intron 20.0%
!!! TTTTAATCATGTGTTTTTAC+AGG + Chr1:7707015-7707034 MsG0180000550.01.T01:intron 20.0%
! AAAAGTAAATGGTAAAGGAA+AGG + Chr1:7707494-7707513 MsG0180000550.01.T01:intron 25.0%
! AAAATAGAAAAACAAACCTG+AGG - Chr1:7699615-7699634 None:intergenic 25.0%
! AAACAAAATTAAACTCGAGT+GGG - Chr1:7703558-7703577 None:intergenic 25.0%
! AAATGATATTGGGTTTCTAT+AGG + Chr1:7703248-7703267 MsG0180000550.01.T01:intron 25.0%
! AAATGTAAAGAAAATCACCA+AGG + Chr1:7708227-7708246 MsG0180000550.01.T01:three_prime_UTR 25.0%
! AATCAGTATACCAGTAAAAA+TGG - Chr1:7700624-7700643 None:intergenic 25.0%
! AATGTAAAGAAAATCACCAA+GGG + Chr1:7708228-7708247 MsG0180000550.01.T01:three_prime_UTR 25.0%
! ACATTGTATAATATGTGTAG+AGG + Chr1:7703148-7703167 MsG0180000550.01.T01:intron 25.0%
! AGAGAAAAAGTAAATGGTAA+AGG + Chr1:7707489-7707508 MsG0180000550.01.T01:intron 25.0%
! AGTCATCTATAAACAACATA+TGG - Chr1:7701227-7701246 None:intergenic 25.0%
! ATAACTGAAGGATATAAAGT+TGG + Chr1:7702452-7702471 MsG0180000550.01.T01:intron 25.0%
! ATACATTTGTTCTCCTTATT+TGG - Chr1:7705649-7705668 None:intergenic 25.0%
! ATTCATCTGCAAACAAAATA+CGG - Chr1:7700855-7700874 None:intergenic 25.0%
! ATTGATGTAACTTCATATAG+TGG - Chr1:7702145-7702164 None:intergenic 25.0%
! CAATTTCTTCAAATGTTGAA+AGG - Chr1:7708174-7708193 None:intergenic 25.0%
! CTAATCTGTTATATTTCTCT+AGG - Chr1:7705606-7705625 None:intergenic 25.0%
! CTTTCAACATTTGAAGAAAT+TGG + Chr1:7708172-7708191 MsG0180000550.01.T01:CDS 25.0%
! GACTTATGAAAATCCAAATA+AGG + Chr1:7705633-7705652 MsG0180000550.01.T01:intron 25.0%
! GCATGCTTAATAAAAAAATC+TGG + Chr1:7704416-7704435 MsG0180000550.01.T01:intron 25.0%
! GCTATCAATAATTTGAATCA+TGG + Chr1:7699826-7699845 MsG0180000550.01.T01:intron 25.0%
! GTCATCTATAAACAACATAT+GGG - Chr1:7701226-7701245 None:intergenic 25.0%
! GTGATTGCTCTTTATATATT+GGG + Chr1:7708021-7708040 MsG0180000550.01.T01:intron 25.0%
! GTTGTACTTATATAATGCTT+TGG + Chr1:7702951-7702970 MsG0180000550.01.T01:intron 25.0%
! TAAACAAAATTAAACTCGAG+TGG - Chr1:7703559-7703578 None:intergenic 25.0%
! TAACTGAAGGATATAAAGTT+GGG + Chr1:7702453-7702472 MsG0180000550.01.T01:intron 25.0%
! TAATGATTAGAGCTTAATTG+AGG - Chr1:7700898-7700917 None:intergenic 25.0%
! TACACTAGACATACAAAATA+GGG - Chr1:7699640-7699659 None:intergenic 25.0%
! TACATAAGACAGTTGAATAA+AGG - Chr1:7708000-7708019 None:intergenic 25.0%
! TAGGTTTACTTACATTACAT+GGG - Chr1:7704451-7704470 None:intergenic 25.0%
! TATAGTAGTCTAATAGTTAG+AGG + Chr1:7705666-7705685 MsG0180000550.01.T01:intron 25.0%
! TATCCTTCAGTTATTAAACA+TGG - Chr1:7702446-7702465 None:intergenic 25.0%
! TCAATTATTGCTTTAATCAC+AGG + Chr1:7704734-7704753 MsG0180000550.01.T01:intron 25.0%
! TCATTATCAGCATTAAATAG+AGG + Chr1:7706992-7707011 MsG0180000550.01.T01:intron 25.0%
! TGTGATTGCTCTTTATATAT+TGG + Chr1:7708020-7708039 MsG0180000550.01.T01:intron 25.0%
! TTACACTAGACATACAAAAT+AGG - Chr1:7699641-7699660 None:intergenic 25.0%
! TTAGGTTTACTTACATTACA+TGG - Chr1:7704452-7704471 None:intergenic 25.0%
! TTGTATGCAATTAATTGCTT+AGG + Chr1:7701151-7701170 MsG0180000550.01.T01:intron 25.0%
! TTGTATTCAATTGCTTAGAT+TGG + Chr1:7700782-7700801 MsG0180000550.01.T01:intron 25.0%
!! AATTCTCTAAACTTCAGTTT+TGG - Chr1:7702104-7702123 None:intergenic 25.0%
!! ACAATTTGATTTAGACACAT+GGG + Chr1:7702529-7702548 MsG0180000550.01.T01:intron 25.0%
!! ACATCTGGAAATTATTTTCT+AGG + Chr1:7706656-7706675 MsG0180000550.01.T01:intron 25.0%
!! AGATAAGGATTTGTTTAACA+AGG - Chr1:7708452-7708471 None:intergenic 25.0%
!! ATATGCCAATTTTTGTCAAA+TGG - Chr1:7703795-7703814 None:intergenic 25.0%
!! ATCATAAGAGATATTTCTGA+CGG - Chr1:7707085-7707104 None:intergenic 25.0%
!! ATTTTCACTATTTCGAGAAT+TGG + Chr1:7705185-7705204 MsG0180000550.01.T01:intron 25.0%
!! ATTTTCTAGGTTGTTAATAG+GGG + Chr1:7706669-7706688 MsG0180000550.01.T01:intron 25.0%
!! CGAAATAGTGAAAATAGTTT+TGG - Chr1:7705180-7705199 None:intergenic 25.0%
!! CGTAAAGTTTGTGTTTATTT+TGG + Chr1:7706519-7706538 MsG0180000550.01.T01:intron 25.0%
!! CTGTTTAAAACACTACAATT+TGG + Chr1:7707640-7707659 MsG0180000550.01.T01:intron 25.0%
!! GACAAGAGTATAAATTAAGA+TGG - Chr1:7705998-7706017 None:intergenic 25.0%
!! TTAATGTGTATTGATAGCAT+TGG + Chr1:7701839-7701858 MsG0180000550.01.T01:CDS 25.0%
!! TTCTTTGTTGATACTTTTAG+GGG + Chr1:7706771-7706790 MsG0180000550.01.T01:intron 25.0%
!! TTTGTTGGTAAATAGCATAA+TGG + Chr1:7702836-7702855 MsG0180000550.01.T01:intron 25.0%
!! TTTTAAACAGAACAGACTAA+CGG - Chr1:7707630-7707649 None:intergenic 25.0%
!! TTTTCACTGAAAACATCTTA+TGG - Chr1:7701343-7701362 None:intergenic 25.0%
!! TTTTTCATTAAGTAGTTGCT+TGG + Chr1:7707377-7707396 MsG0180000550.01.T01:intron 25.0%
!! TTTTTCTTGTTCCTAATGTT+GGG + Chr1:7701987-7702006 MsG0180000550.01.T01:CDS 25.0%
!!! AAAAAGAAAGCATTATGACA+AGG - Chr1:7705884-7705903 None:intergenic 25.0%
!!! AAGTTATGGTTAGTTTTTCT+AGG - Chr1:7702783-7702802 None:intergenic 25.0%
!!! AGAACTGATTTTACTAACTA+TGG + Chr1:7701916-7701935 MsG0180000550.01.T01:CDS 25.0%
!!! AGTTATGGTTAGTTTTTCTA+GGG - Chr1:7702782-7702801 None:intergenic 25.0%
!!! ATGCTTCTGTTGTTATTTTA+GGG + Chr1:7700218-7700237 MsG0180000550.01.T01:intron 25.0%
!!! ATTAAGCATGCTTTTTGTTT+AGG - Chr1:7704407-7704426 None:intergenic 25.0%
!!! TAGATTTGTTACACTTGTTT+TGG + Chr1:7701964-7701983 MsG0180000550.01.T01:CDS 25.0%
!!! TATATGATGTGATTTTAAGG+AGG - Chr1:7706169-7706188 None:intergenic 25.0%
!!! TGAACACAAATTTTAGGAAA+TGG - Chr1:7705078-7705097 None:intergenic 25.0%
!!! TGTAGTTTTTTAGATACTTG+TGG - Chr1:7701594-7701613 None:intergenic 25.0%
!!! TTCCTAATATTTTTGTCAGA+GGG - Chr1:7707955-7707974 None:intergenic 25.0%
!!! TTGAATCATGGTTTGTTTTT+AGG + Chr1:7699838-7699857 MsG0180000550.01.T01:intron 25.0%
!!! TTTCCTAATATTTTTGTCAG+AGG - Chr1:7707956-7707975 None:intergenic 25.0%
!!! TTTCTGAAACAAATGACTAT+TGG + Chr1:7708371-7708390 MsG0180000550.01.T01:three_prime_UTR 25.0%
!!! TTTGATCGACTTTTTTTCAT+CGG - Chr1:7702640-7702659 None:intergenic 25.0%
!!! TTTTTTAAGGTGAATAAGTG+TGG - Chr1:7703195-7703214 None:intergenic 25.0%
!!! TTTTTTGTCAAATAGTCTAG+TGG - Chr1:7703230-7703249 None:intergenic 25.0%
AAACACTACAATTTGGATCA+AGG + Chr1:7707647-7707666 MsG0180000550.01.T01:intron 30.0%
AAACCTCATCGAATAAGATT+TGG + Chr1:7704470-7704489 MsG0180000550.01.T01:intron 30.0%
AACCCTCTGACAAAAATATT+AGG + Chr1:7707950-7707969 MsG0180000550.01.T01:intron 30.0%
AAGCCATGTTTAATAACTGA+AGG + Chr1:7702440-7702459 MsG0180000550.01.T01:intron 30.0%
AAGCTCTTGATTATGTTTGA+AGG + Chr1:7702557-7702576 MsG0180000550.01.T01:intron 30.0%
AATCTTATTCGATGAGGTTT+AGG - Chr1:7704470-7704489 None:intergenic 30.0%
AATGACAACAAAAAGTAGTC+AGG - Chr1:7701715-7701734 None:intergenic 30.0%
AATGTTCCTTCAATTCCTAA+TGG - Chr1:7701809-7701828 None:intergenic 30.0%
ACTATCGGTGTAAATATTCA+TGG - Chr1:7704035-7704054 None:intergenic 30.0%
ACTTAATCTTCATTCTACGT+TGG + Chr1:7701671-7701690 MsG0180000550.01.T01:intron 30.0%
AGATTCTCGAACGAATTATT+TGG - Chr1:7703530-7703549 None:intergenic 30.0%
AGTAAGAAAACGATAGTGAA+AGG - Chr1:7705818-7705837 None:intergenic 30.0%
ATAAGAATCACAGGCAAATA+AGG + Chr1:7701747-7701766 MsG0180000550.01.T01:intron 30.0%
ATAGACCTGATATTGCATAT+AGG - Chr1:7701648-7701667 None:intergenic 30.0%
ATATGCAATATCAGGTCTAT+TGG + Chr1:7701648-7701667 MsG0180000550.01.T01:intron 30.0%
ATCTATGAAAAGAGAACCAT+TGG + Chr1:7700294-7700313 MsG0180000550.01.T01:intron 30.0%
ATCTTTGACATAAACACTTG+TGG + Chr1:7701279-7701298 MsG0180000550.01.T01:intron 30.0%
ATGTGTGTACCTTTAATCTT+CGG + Chr1:7702994-7703013 MsG0180000550.01.T01:intron 30.0%
ATTACAAGGACAATGCTAAA+AGG - Chr1:7705448-7705467 None:intergenic 30.0%
ATTGATGTTAGAGAAAAGTG+AGG + Chr1:7707299-7707318 MsG0180000550.01.T01:intron 30.0%
ATTGTTTCAATGTGACTGAA+AGG + Chr1:7706816-7706835 MsG0180000550.01.T01:intron 30.0%
CAAGAATTCAACACATCAAA+AGG + Chr1:7706043-7706062 MsG0180000550.01.T01:intron 30.0%
CAGCTAAATAGTACAAGATA+AGG - Chr1:7708467-7708486 None:intergenic 30.0%
CATATCATTCCATTACAAAG+TGG - Chr1:7703053-7703072 None:intergenic 30.0%
CGTAACTATACCAATTTCTA+GGG - Chr1:7702296-7702315 None:intergenic 30.0%
CTACGTTGGAATTTGAAAAT+TGG + Chr1:7701685-7701704 MsG0180000550.01.T01:intron 30.0%
GAAATGGAAAGAATACCAAA+TGG + Chr1:7704343-7704362 MsG0180000550.01.T01:intron 30.0%
GAACATACTGTTTCAATATG+TGG + Chr1:7706592-7706611 MsG0180000550.01.T01:intron 30.0%
GAGAAAAAGAAGAAAGTAGA+TGG - Chr1:7704865-7704884 None:intergenic 30.0%
GATTCTCGAACGAATTATTT+GGG - Chr1:7703529-7703548 None:intergenic 30.0%
GATTGAACGTTTCAATTTCA+TGG + Chr1:7699988-7700007 MsG0180000550.01.T01:intron 30.0%
GTAATCATACCACTTTGTAA+TGG + Chr1:7703041-7703060 MsG0180000550.01.T01:intron 30.0%
GTATCACTACCAAAAAAAGA+TGG - Chr1:7704069-7704088 None:intergenic 30.0%
GTGAAGAAAAGAAAAGTTGT+GGG + Chr1:7702880-7702899 MsG0180000550.01.T01:intron 30.0%
GTGTTATGGACTTCAAAAAT+TGG + Chr1:7706364-7706383 MsG0180000550.01.T01:intron 30.0%
GTTATATTGAGTGAACTAGA+AGG - Chr1:7702680-7702699 None:intergenic 30.0%
GTTGGTATAATCTATGCAAT+TGG + Chr1:7701535-7701554 MsG0180000550.01.T01:intron 30.0%
TAGGAAAATGAAGTGAACTT+AGG + Chr1:7707969-7707988 MsG0180000550.01.T01:intron 30.0%
TATTGCAAGGAATAGTATTG+AGG + Chr1:7699489-7699508 MsG0180000550.01.T01:CDS 30.0%
TCGTAACTATACCAATTTCT+AGG - Chr1:7702297-7702316 None:intergenic 30.0%
TCTGGACATGATTTATGATT+GGG + Chr1:7705755-7705774 MsG0180000550.01.T01:intron 30.0%
TGAAAACCATATATGCTTGA+CGG - Chr1:7705555-7705574 None:intergenic 30.0%
TGTATAATATGTGTAGAGGT+CGG + Chr1:7703152-7703171 MsG0180000550.01.T01:intron 30.0%
TGTGAAGAAAAGAAAAGTTG+TGG + Chr1:7702879-7702898 MsG0180000550.01.T01:intron 30.0%
TTACAAGGACAATGCTAAAA+GGG - Chr1:7705447-7705466 None:intergenic 30.0%
TTCATCTGCAAACAAAATAC+GGG - Chr1:7700854-7700873 None:intergenic 30.0%
TTCTTTACTTGCAGTTATGA+TGG + Chr1:7708098-7708117 MsG0180000550.01.T01:intron 30.0%
TTGATTCACTTTGTGCAAAT+AGG - Chr1:7700379-7700398 None:intergenic 30.0%
! AATCAGTTCTAGTAACATGA+AGG - Chr1:7701906-7701925 None:intergenic 30.0%
! AATTGAGGTGTTATCTAAAC+AGG - Chr1:7700883-7700902 None:intergenic 30.0%
! ATCACGATTGCATTTAAAAC+AGG - Chr1:7706215-7706234 None:intergenic 30.0%
! ATCAGTTCTAGTAACATGAA+GGG - Chr1:7701905-7701924 None:intergenic 30.0%
! CACAATTTGATTTAGACACA+TGG + Chr1:7702528-7702547 MsG0180000550.01.T01:intron 30.0%
! CGTGTAAGTATAGTTTTTGT+TGG - Chr1:7704588-7704607 None:intergenic 30.0%
! CTGATTTTACTAACTATGGT+TGG + Chr1:7701920-7701939 MsG0180000550.01.T01:CDS 30.0%
! CTTTTGATGTGTTGAATTCT+TGG - Chr1:7706045-7706064 None:intergenic 30.0%
! GCATTGTCCTTGTAATATTT+TGG + Chr1:7705452-7705471 MsG0180000550.01.T01:intron 30.0%
! GTAACTATACCAATTTCTAG+GGG - Chr1:7702295-7702314 None:intergenic 30.0%
! GTTTTTCTTGTTCCTAATGT+TGG + Chr1:7701986-7702005 MsG0180000550.01.T01:CDS 30.0%
! TAACTATACCAATTTCTAGG+GGG - Chr1:7702294-7702313 None:intergenic 30.0%
! TAATTTAAGATACTTTCGCG+AGG + Chr1:7706342-7706361 MsG0180000550.01.T01:intron 30.0%
! TATCTAAAACCATCAAACAC+AGG + Chr1:7706089-7706108 MsG0180000550.01.T01:intron 30.0%
! TCTTTGTTGATACTTTTAGG+GGG + Chr1:7706772-7706791 MsG0180000550.01.T01:intron 30.0%
! TTAGTTAGTTAGTGCTGAAT+TGG + Chr1:7700454-7700473 MsG0180000550.01.T01:intron 30.0%
!! ACTTCAGTTTTGGCATTTAA+AGG - Chr1:7702094-7702113 None:intergenic 30.0%
!! GTGATTTTAAGGAGGAATTA+AGG - Chr1:7706161-7706180 None:intergenic 30.0%
!! TGGTATACTGATTCAAAAGT+CGG + Chr1:7700631-7700650 MsG0180000550.01.T01:intron 30.0%
!!! GATGCTTCTGTTGTTATTTT+AGG + Chr1:7700217-7700236 MsG0180000550.01.T01:intron 30.0%
!!! TCATGGTTTGTTTTTAGGAT+TGG + Chr1:7699843-7699862 MsG0180000550.01.T01:intron 30.0%
!!! TGCTTCTGTTGTTATTTTAG+GGG + Chr1:7700219-7700238 MsG0180000550.01.T01:intron 30.0%
!!! TTGTTGGTTTTTCACGTTTA+TGG - Chr1:7704572-7704591 None:intergenic 30.0%
!!! TTTCGATCAACCTTTTTCAA+GGG - Chr1:7702609-7702628 None:intergenic 30.0%
!!! TTTGGTTTTAACTGTGACTT+TGG + Chr1:7705470-7705489 MsG0180000550.01.T01:intron 30.0%
AAACTAATGCACCAAATGCT+TGG - Chr1:7705410-7705429 None:intergenic 35.0%
AAAGAAGAGGAATCTAGAGA+GGG - Chr1:7707866-7707885 None:intergenic 35.0%
AACACTTGTGGAAACTGTTT+AGG + Chr1:7701291-7701310 MsG0180000550.01.T01:intron 35.0%
AAGTCGAAATTACCACTGTA+CGG + Chr1:7704497-7704516 MsG0180000550.01.T01:intron 35.0%
AATTACTTATAAGCGCTCTC+TGG - Chr1:7699765-7699784 None:intergenic 35.0%
AATTGTGGAACGCATACTAT+AGG + Chr1:7705577-7705596 MsG0180000550.01.T01:intron 35.0%
ACAAACTCCTGCATATTCAA+AGG - Chr1:7701517-7701536 None:intergenic 35.0%
ACAAAGTAACCAAGTGATTG+GGG - Chr1:7705038-7705057 None:intergenic 35.0%
ACACTCGAATAAACAAGACT+CGG - Chr1:7704534-7704553 None:intergenic 35.0%
ACACTTGTGGAAACTGTTTA+GGG + Chr1:7701292-7701311 MsG0180000550.01.T01:intron 35.0%
ACTAAGGAATTGCTGAATAC+AGG + Chr1:7701190-7701209 MsG0180000550.01.T01:intron 35.0%
ACTGTATGAAAGGAAACTGA+AGG + Chr1:7707047-7707066 MsG0180000550.01.T01:CDS 35.0%
AGCAATTGTGAGTTTGAAAG+AGG + Chr1:7707774-7707793 MsG0180000550.01.T01:intron 35.0%
AGCACAAAACTATGTCCATT+AGG + Chr1:7701791-7701810 MsG0180000550.01.T01:CDS 35.0%
AGCTATTGATGAACATCAGA+CGG + Chr1:7701103-7701122 MsG0180000550.01.T01:intron 35.0%
AGTCTAATAGTTAGAGGTAG+AGG + Chr1:7705672-7705691 MsG0180000550.01.T01:intron 35.0%
AGTGGTTACATTAAGAGCAA+GGG - Chr1:7700593-7700612 None:intergenic 35.0%
AGTTACTATAGCAGTTAAGC+TGG - Chr1:7704206-7704225 None:intergenic 35.0%
AGTTCGGAGATTGTATAGAA+TGG + Chr1:7699959-7699978 MsG0180000550.01.T01:intron 35.0%
ATATCAAGCAACATAGCCAT+CGG - Chr1:7708284-7708303 None:intergenic 35.0%
ATATTGAGTGAACTAGAAGG+AGG - Chr1:7702677-7702696 None:intergenic 35.0%
ATGACTATTGGCAATTAGCA+TGG + Chr1:7708383-7708402 MsG0180000550.01.T01:three_prime_UTR 35.0%
ATGTTTGAAGGTTGCTCATA+GGG + Chr1:7702569-7702588 MsG0180000550.01.T01:intron 35.0%
ATTACTTATAAGCGCTCTCT+GGG - Chr1:7699764-7699783 None:intergenic 35.0%
ATTGTGGAACGCATACTATA+GGG + Chr1:7705578-7705597 MsG0180000550.01.T01:intron 35.0%
ATTTAAAGGAACAAGCTCCA+AGG - Chr1:7702080-7702099 None:intergenic 35.0%
CAAACTCCTGCATATTCAAA+GGG - Chr1:7701516-7701535 None:intergenic 35.0%
CAAAGATCATTTCCATCAAG+AGG - Chr1:7702739-7702758 None:intergenic 35.0%
CAACTCCTATATGCAATATC+AGG + Chr1:7701640-7701659 MsG0180000550.01.T01:intron 35.0%
CACAAAGTAACCAAGTGATT+GGG - Chr1:7705039-7705058 None:intergenic 35.0%
CACTACCAAAAAAAGATGGA+GGG - Chr1:7704065-7704084 None:intergenic 35.0%
CATAATCTACCTGTGTTTGA+TGG - Chr1:7706101-7706120 None:intergenic 35.0%
CATACAATACACCAAATGGT+GGG + Chr1:7706892-7706911 MsG0180000550.01.T01:intron 35.0%
CCAGACCATTTGACAAAAAT+TGG + Chr1:7703787-7703806 MsG0180000550.01.T01:intron 35.0%
CTAAACATGTACACCTCTTT+CGG - Chr1:7703336-7703355 None:intergenic 35.0%
CTATGTCCATTAGGAATTGA+AGG + Chr1:7701800-7701819 MsG0180000550.01.T01:CDS 35.0%
CTATTGATGCTTGTATTGCA+AGG + Chr1:7699476-7699495 MsG0180000550.01.T01:CDS 35.0%
CTCTGGACATGATTTATGAT+TGG + Chr1:7705754-7705773 MsG0180000550.01.T01:intron 35.0%
CTCTTGATGGAAATGATCTT+TGG + Chr1:7702737-7702756 MsG0180000550.01.T01:intron 35.0%
CTGAAAACATCTTATGGACA+TGG - Chr1:7701337-7701356 None:intergenic 35.0%
CTTAATGTAACCACTCATGA+AGG + Chr1:7700598-7700617 MsG0180000550.01.T01:intron 35.0%
CTTGCATAATGAAAAGAAGC+AGG + Chr1:7700317-7700336 MsG0180000550.01.T01:intron 35.0%
GAAGAACTTGTCTGTTATGT+CGG + Chr1:7708250-7708269 MsG0180000550.01.T01:three_prime_UTR 35.0%
GATCTCTACAACTTCATAGA+CGG + Chr1:7707111-7707130 MsG0180000550.01.T01:CDS 35.0%
GATGAAGAGGAAGAAGAAAA+TGG - Chr1:7704628-7704647 None:intergenic 35.0%
GGTTTCTTTGTTCATCATCT+TGG + Chr1:7699588-7699607 MsG0180000550.01.T01:CDS 35.0%
GTATAATATGTGTAGAGGTC+GGG + Chr1:7703153-7703172 MsG0180000550.01.T01:intron 35.0%
GTGAAAATCCATGAAAGTTC+TGG - Chr1:7704814-7704833 None:intergenic 35.0%
GTGATATAGGACAATACATC+TGG + Chr1:7706641-7706660 MsG0180000550.01.T01:intron 35.0%
GTGCAAATAGGCTTATGATA+TGG - Chr1:7700367-7700386 None:intergenic 35.0%
GTTGCATACAATACACCAAA+TGG + Chr1:7706888-7706907 MsG0180000550.01.T01:intron 35.0%
TAAACTCACACTCAACTATG+AGG + Chr1:7703649-7703668 MsG0180000550.01.T01:intron 35.0%
TAAAGAAGAGGAATCTAGAG+AGG - Chr1:7707867-7707886 None:intergenic 35.0%
TAAGGAGGAATTAAGGCAAT+TGG - Chr1:7706154-7706173 None:intergenic 35.0%
TAGATGACTAATGACCTGTT+TGG + Chr1:7701238-7701257 MsG0180000550.01.T01:intron 35.0%
TAGTTAAGATCCTCTCCATT+TGG - Chr1:7704361-7704380 None:intergenic 35.0%
TATAATATGTGTAGAGGTCG+GGG + Chr1:7703154-7703173 MsG0180000550.01.T01:intron 35.0%
TATCCTTGTCAAGTGTTCTA+TGG + Chr1:7708413-7708432 MsG0180000550.01.T01:three_prime_UTR 35.0%
TATGTTTGAAGGTTGCTCAT+AGG + Chr1:7702568-7702587 MsG0180000550.01.T01:intron 35.0%
TATTGATGTAAGCAGCGAAA+TGG - Chr1:7706258-7706277 None:intergenic 35.0%
TCAAACAAGTCAATCCAAAC+AGG - Chr1:7701255-7701274 None:intergenic 35.0%
TCAATTTCCCGAAATATGAG+AGG - Chr1:7700676-7700695 None:intergenic 35.0%
TCACAAAGTAACCAAGTGAT+TGG - Chr1:7705040-7705059 None:intergenic 35.0%
TCACTACCAAAAAAAGATGG+AGG - Chr1:7704066-7704085 None:intergenic 35.0%
TCATTGCTTCACAGTGATAT+AGG + Chr1:7706628-7706647 MsG0180000550.01.T01:intron 35.0%
TCTTGTGTGAAAACAAGGTA+AGG + Chr1:7706866-7706885 MsG0180000550.01.T01:intron 35.0%
TGACTTTGGATTGTGGAATT+TGG + Chr1:7705484-7705503 MsG0180000550.01.T01:intron 35.0%
TGATATTGATGAAGAGACCT+TGG + Chr1:7702060-7702079 MsG0180000550.01.T01:intron 35.0%
TTAACTGTGACTTTGGATTG+TGG + Chr1:7705477-7705496 MsG0180000550.01.T01:intron 35.0%
TTAATCCACTCTCGATCATA+GGG - Chr1:7708143-7708162 None:intergenic 35.0%
TTATGATGTTTGGCTGTATG+AGG + Chr1:7706444-7706463 MsG0180000550.01.T01:intron 35.0%
TTCATTATGTCCTTAACTCC+AGG - Chr1:7707890-7707909 None:intergenic 35.0%
TTGAATATGCAGGAGTTTGT+TGG + Chr1:7701517-7701536 MsG0180000550.01.T01:intron 35.0%
TTGCCAAATCTTATTCGATG+AGG - Chr1:7704476-7704495 None:intergenic 35.0%
TTTGGCAGAGGAAGAATAAA+TGG + Chr1:7705502-7705521 MsG0180000550.01.T01:intron 35.0%
TTTGTGCTTAGTACCATCAT+AGG - Chr1:7701779-7701798 None:intergenic 35.0%
! AACTATACCAATTTCTAGGG+GGG - Chr1:7702293-7702312 None:intergenic 35.0%
! ACATTTGAGATCACGGTTAT+CGG + Chr1:7700718-7700737 MsG0180000550.01.T01:intron 35.0%
! AGTCACTACATTTGAGATCA+CGG + Chr1:7700711-7700730 MsG0180000550.01.T01:intron 35.0%
! ATGTGTATTGATAGCATTGG+TGG + Chr1:7701842-7701861 MsG0180000550.01.T01:CDS 35.0%
! ATTTTATGCTGAGCTAGAAC+TGG + Chr1:7707603-7707622 MsG0180000550.01.T01:intron 35.0%
! CATTTAAAACAGGCGATTGA+AGG - Chr1:7706205-7706224 None:intergenic 35.0%
! CCAATTTTTGTCAAATGGTC+TGG - Chr1:7703790-7703809 None:intergenic 35.0%
! CTCTCAAATTTTGCATGCAT+AGG + Chr1:7707170-7707189 MsG0180000550.01.T01:intron 35.0%
! CTTTTCATTATGCAAGCCAA+TGG - Chr1:7700313-7700332 None:intergenic 35.0%
! GAGTGTGAGTTTAATTTCAG+TGG - Chr1:7703642-7703661 None:intergenic 35.0%
!! CTTTCGATCAACCTTTTTCA+AGG - Chr1:7702610-7702629 None:intergenic 35.0%
!! CTTTGTTGATACTTTTAGGG+GGG + Chr1:7706773-7706792 MsG0180000550.01.T01:intron 35.0%
!! TGGTGGCCTTATATCAAAAT+GGG + Chr1:7701859-7701878 MsG0180000550.01.T01:CDS 35.0%
!! TGTGTTTTTACAGGCATATG+TGG + Chr1:7707024-7707043 MsG0180000550.01.T01:intron 35.0%
!! TTGGTGGCCTTATATCAAAA+TGG + Chr1:7701858-7701877 MsG0180000550.01.T01:CDS 35.0%
!!! AGCTTTTTCATAAGCTCTTC+TGG + Chr1:7700992-7701011 MsG0180000550.01.T01:intron 35.0%
!!! ATACATTTTTTAGGGGGTAG+TGG + Chr1:7700485-7700504 MsG0180000550.01.T01:intron 35.0%
!!! GTCACTTTTTAGTCTCTGTT+TGG - Chr1:7701449-7701468 None:intergenic 35.0%
!!! TTTTTTAACGTGGTTTGCTC+TGG + Chr1:7705737-7705756 MsG0180000550.01.T01:intron 35.0%
AAAAAACCCCCCCTAGAAAT+TGG + Chr1:7702283-7702302 MsG0180000550.01.T01:intron 40.0%
AAACTTAACTGCCTCTCTGT+TGG + Chr1:7707677-7707696 MsG0180000550.01.T01:intron 40.0%
AACACCAAGCACATAGTTGA+TGG - Chr1:7706489-7706508 None:intergenic 40.0%
AACCACGTGAGTTAAACTCA+TGG - Chr1:7703126-7703145 None:intergenic 40.0%
AAGAAGAGGAATCTAGAGAG+GGG - Chr1:7707865-7707884 None:intergenic 40.0%
AAGAGGTCTTAAACCCTTGA+AGG + Chr1:7707791-7707810 MsG0180000550.01.T01:intron 40.0%
AAGTCCATCAACTATGTGCT+TGG + Chr1:7706482-7706501 MsG0180000550.01.T01:intron 40.0%
AATAAGGTGGATGCCTATGA+TGG + Chr1:7701763-7701782 MsG0180000550.01.T01:CDS 40.0%
AATCTATGCAATTGGTGCAG+TGG + Chr1:7701543-7701562 MsG0180000550.01.T01:intron 40.0%
AATGTAGGAACGACAATTCG+AGG + Chr1:7700510-7700529 MsG0180000550.01.T01:intron 40.0%
ACAATAAGTGTCCTCAAGCA+TGG + Chr1:7700543-7700562 MsG0180000550.01.T01:intron 40.0%
ACTCCAGCAACGACAAAATA+AGG - Chr1:7699348-7699367 None:intergenic 40.0%
AGAAGGAAGAACCACTCTAT+TGG + Chr1:7703969-7703988 MsG0180000550.01.T01:intron 40.0%
AGAATCACAGGCAAATAAGG+TGG + Chr1:7701750-7701769 MsG0180000550.01.T01:intron 40.0%
AGGAATTAAGGCAATTGGAG+GGG - Chr1:7706149-7706168 None:intergenic 40.0%
AGGATTGGAGTTGAGCAATT+TGG + Chr1:7699858-7699877 MsG0180000550.01.T01:intron 40.0%
ATACCGTAATGTCTGATGAG+TGG + Chr1:7700195-7700214 MsG0180000550.01.T01:intron 40.0%
ATGAGTTTAACTCACGTGGT+TGG + Chr1:7703125-7703144 MsG0180000550.01.T01:intron 40.0%
ATGGAGGGAGTTCATACTAT+CGG - Chr1:7704050-7704069 None:intergenic 40.0%
ATGTAAGCAGCGAAATGGTT+AGG - Chr1:7706253-7706272 None:intergenic 40.0%
CAATTCACTGAATCAGTGCT+AGG + Chr1:7705277-7705296 MsG0180000550.01.T01:intron 40.0%
CATCCACTCATCAGACATTA+CGG - Chr1:7700201-7700220 None:intergenic 40.0%
CCAACACATTACTCCTTCAA+GGG - Chr1:7707807-7707826 None:intergenic 40.0%
CTAGATTCCTCTTCTTTACC+TGG + Chr1:7707869-7707888 MsG0180000550.01.T01:intron 40.0%
CTATAAACAACATATGGGCC+TGG - Chr1:7701221-7701240 None:intergenic 40.0%
CTCAGGTACCTCTCATATTT+CGG + Chr1:7700665-7700684 MsG0180000550.01.T01:intron 40.0%
CTCATTTCACAAACCTCAGA+AGG - Chr1:7702031-7702050 None:intergenic 40.0%
CTCTTCTTTACCTGGAGTTA+AGG + Chr1:7707877-7707896 MsG0180000550.01.T01:intron 40.0%
CTTAACTCCAGGTAAAGAAG+AGG - Chr1:7707879-7707898 None:intergenic 40.0%
CTTAATCCACTCTCGATCAT+AGG - Chr1:7708144-7708163 None:intergenic 40.0%
CTTATATCAAAATGGGGGGA+GGG + Chr1:7701866-7701885 MsG0180000550.01.T01:CDS 40.0%
CTTCCTATCTACCAAGCATT+TGG + Chr1:7705396-7705415 MsG0180000550.01.T01:intron 40.0%
CTTCTTGGTTATCTTGCTAG+TGG + Chr1:7699567-7699586 MsG0180000550.01.T01:CDS 40.0%
CTTGTCTAAACCTACTTCCT+TGG + Chr1:7706012-7706031 MsG0180000550.01.T01:intron 40.0%
GAAGGAATCAACTCCTCATA+AGG - Chr1:7702013-7702032 None:intergenic 40.0%
GAATGTCGAAATTGCAAGGT+CGG - Chr1:7703703-7703722 None:intergenic 40.0%
GAGGAATTAAGGCAATTGGA+GGG - Chr1:7706150-7706169 None:intergenic 40.0%
GAGTGGTTACATTAAGAGCA+AGG - Chr1:7700594-7700613 None:intergenic 40.0%
GATGCTGCTATAAGAATCAC+AGG + Chr1:7701738-7701757 MsG0180000550.01.T01:intron 40.0%
GCAAGTAAAGAACAACCAAC+CGG - Chr1:7708090-7708109 None:intergenic 40.0%
GCATACAATACACCAAATGG+TGG + Chr1:7706891-7706910 MsG0180000550.01.T01:intron 40.0%
GCATTACCGTCAAGCATATA+TGG + Chr1:7705546-7705565 MsG0180000550.01.T01:intron 40.0%
GGAAAGAATACCAAATGGAG+AGG + Chr1:7704348-7704367 MsG0180000550.01.T01:intron 40.0%
GGAAAGACTCGAGTAATTGT+AGG + Chr1:7705693-7705712 MsG0180000550.01.T01:intron 40.0%
GGAAGGAACATGTAAAGAGA+TGG - Chr1:7700572-7700591 None:intergenic 40.0%
GTAAAAATGGCCTTCATGAG+TGG - Chr1:7700611-7700630 None:intergenic 40.0%
GTGCAGTGGCTTCAATAATA+GGG + Chr1:7701557-7701576 MsG0180000550.01.T01:intron 40.0%
GTTACATTAAGAGCAAGGGA+AGG - Chr1:7700589-7700608 None:intergenic 40.0%
GTTTGCCTTGGAATTGGTTA+AGG + Chr1:7708063-7708082 MsG0180000550.01.T01:intron 40.0%
TAACAGACAAGTTCTTCCCT+TGG - Chr1:7708247-7708266 None:intergenic 40.0%
TAGAGCTACCAGAACTTTCA+TGG + Chr1:7704803-7704822 MsG0180000550.01.T01:intron 40.0%
TAGCCATAGAACACTTGACA+AGG - Chr1:7708419-7708438 None:intergenic 40.0%
TATCAAGCAACATAGCCATC+GGG - Chr1:7708283-7708302 None:intergenic 40.0%
TCAACAATACGTGCCTCTAT+CGG + Chr1:7706718-7706737 MsG0180000550.01.T01:intron 40.0%
TCAATGTGACTGAAAGGTCA+CGG + Chr1:7706822-7706841 MsG0180000550.01.T01:intron 40.0%
TCACTATTTCGAGAATTGGC+AGG + Chr1:7705189-7705208 MsG0180000550.01.T01:intron 40.0%
TCAGGGTTAGAAAAGTCTCA+AGG + Chr1:7699738-7699757 MsG0180000550.01.T01:intron 40.0%
TCAGGTACCTCTCATATTTC+GGG + Chr1:7700666-7700685 MsG0180000550.01.T01:intron 40.0%
TCCAACACATTACTCCTTCA+AGG - Chr1:7707808-7707827 None:intergenic 40.0%
TCTGCAAACAAAATACGGGA+TGG - Chr1:7700850-7700869 None:intergenic 40.0%
TGACGAATGTCGAAATTGCA+AGG - Chr1:7703707-7703726 None:intergenic 40.0%
TGCAGTGGCTTCAATAATAG+GGG + Chr1:7701558-7701577 MsG0180000550.01.T01:intron 40.0%
TGGAGACTACCGAAGATTAA+AGG - Chr1:7703006-7703025 None:intergenic 40.0%
TTAGCTAACTGCAGTGACTA+AGG + Chr1:7701174-7701193 MsG0180000550.01.T01:intron 40.0%
TTCCACCTAGGAATAGAACT+CGG + Chr1:7704973-7704992 MsG0180000550.01.T01:intron 40.0%
TTCGAGAATTGGCAGGATTT+GGG + Chr1:7705196-7705215 MsG0180000550.01.T01:intron 40.0%
TTGGAGTTGAGCAATTTGGT+TGG + Chr1:7699862-7699881 MsG0180000550.01.T01:intron 40.0%
TTTCCTCCCTTTGAATATGC+AGG + Chr1:7701507-7701526 MsG0180000550.01.T01:intron 40.0%
TTTCGAGAATTGGCAGGATT+TGG + Chr1:7705195-7705214 MsG0180000550.01.T01:intron 40.0%
! AAAGGCTTTTCTCACAAGGT+GGG - Chr1:7705800-7705819 None:intergenic 40.0%
! AAGAGTATGGGTGAGAACAT+TGG + Chr1:7707750-7707769 MsG0180000550.01.T01:intron 40.0%
! ACAATTTTACCGTTGTGCCA+AGG - Chr1:7706801-7706820 None:intergenic 40.0%
! ACTATACCAATTTCTAGGGG+GGG - Chr1:7702292-7702311 None:intergenic 40.0%
! AGATTCTTTTTCTACCCCTC+TGG + Chr1:7702476-7702495 MsG0180000550.01.T01:intron 40.0%
! AGGAATAGTATTGAGGTTCC+AGG + Chr1:7699496-7699515 MsG0180000550.01.T01:CDS 40.0%
! AGTGAAAGGCTTTTCTCACA+AGG - Chr1:7705804-7705823 None:intergenic 40.0%
! CTGATTTGCAGAGTTTGTGT+GGG + Chr1:7699524-7699543 MsG0180000550.01.T01:CDS 40.0%
! GATTCTTTTTCTACCCCTCT+GGG + Chr1:7702477-7702496 MsG0180000550.01.T01:intron 40.0%
! GCATATGTGGACTGTATGAA+AGG + Chr1:7707037-7707056 MsG0180000550.01.T01:CDS 40.0%
! GGAATAGTATTGAGGTTCCA+GGG + Chr1:7699497-7699516 MsG0180000550.01.T01:CDS 40.0%
! TAAGAGATATTTCTGACGGC+TGG - Chr1:7707081-7707100 None:intergenic 40.0%
! TGGTGTAGTTGATGCAAGTA+AGG + Chr1:7705522-7705541 MsG0180000550.01.T01:intron 40.0%
! TTCCTGCATTGACATTGTCT+GGG + Chr1:7700264-7700283 MsG0180000550.01.T01:intron 40.0%
! TTTCCTGCATTGACATTGTC+TGG + Chr1:7700263-7700282 MsG0180000550.01.T01:intron 40.0%
! TTTTGAATCTCGACCGAAAG+AGG + Chr1:7703320-7703339 MsG0180000550.01.T01:intron 40.0%
! TTTTGTCAGAGGGTTACAAC+AGG - Chr1:7707945-7707964 None:intergenic 40.0%
!! CATTAGCTTTACCAACAGAG+AGG - Chr1:7707691-7707710 None:intergenic 40.0%
!! CTAGCACTGATTCAGTGAAT+TGG - Chr1:7705279-7705298 None:intergenic 40.0%
!! CTATGATCGAGAGTGGATTA+AGG + Chr1:7708142-7708161 MsG0180000550.01.T01:CDS 40.0%
!! GGTGGCCTTATATCAAAATG+GGG + Chr1:7701860-7701879 MsG0180000550.01.T01:CDS 40.0%
!! GTGGCCTTATATCAAAATGG+GGG + Chr1:7701861-7701880 MsG0180000550.01.T01:CDS 40.0%
!! TGGCCTTATATCAAAATGGG+GGG + Chr1:7701862-7701881 MsG0180000550.01.T01:CDS 40.0%
!!! AGTTTGTGTGGGTTTTGTTC+TGG + Chr1:7699535-7699554 MsG0180000550.01.T01:CDS 40.0%
!!! CAACTATGTGCTTGGTGTTT+TGG + Chr1:7706490-7706509 MsG0180000550.01.T01:intron 40.0%
!!! CTCATGAAGGCCATTTTTAC+TGG + Chr1:7700611-7700630 MsG0180000550.01.T01:intron 40.0%
!!! GAACTCCCTCCATCTTTTTT+TGG + Chr1:7704057-7704076 MsG0180000550.01.T01:intron 40.0%
!!! TGTTTTTGGTGTTAACCCTC+CGG + Chr1:7704930-7704949 MsG0180000550.01.T01:intron 40.0%
!!! TTGTGTTTATTTTGGCGAGC+AGG + Chr1:7706527-7706546 MsG0180000550.01.T01:intron 40.0%
!!! TTGTTATTTTAGGGGTCGCT+TGG + Chr1:7700227-7700246 MsG0180000550.01.T01:intron 40.0%
AAAGGAGTCTGTCCTCTTGA+TGG + Chr1:7702724-7702743 MsG0180000550.01.T01:intron 45.0%
AACCCAGACAATGTCAATGC+AGG - Chr1:7700269-7700288 None:intergenic 45.0%
ACTCCTGCATATTCAAAGGG+AGG - Chr1:7701513-7701532 None:intergenic 45.0%
ACTTGGGAATCACACAGTCA+AGG - Chr1:7705958-7705977 None:intergenic 45.0%
ACTTTCCCTATGATCGAGAG+TGG + Chr1:7708135-7708154 MsG0180000550.01.T01:CDS 45.0%
AGAAGAGGAATCTAGAGAGG+GGG - Chr1:7707864-7707883 None:intergenic 45.0%
AGAAGCCGAGTTCTATTCCT+AGG - Chr1:7704981-7705000 None:intergenic 45.0%
AGAGAAAAGTGAGGTGAGAG+AGG + Chr1:7707308-7707327 MsG0180000550.01.T01:intron 45.0%
AGGGGGTTATACAGTAAGGT+TGG - Chr1:7706131-7706150 None:intergenic 45.0%
CAACAATACGTGCCTCTATC+GGG + Chr1:7706719-7706738 MsG0180000550.01.T01:intron 45.0%
CAATGTGACTGAAAGGTCAC+GGG + Chr1:7706823-7706842 MsG0180000550.01.T01:intron 45.0%
CACCATGAGTTTAACTCACG+TGG + Chr1:7703121-7703140 MsG0180000550.01.T01:intron 45.0%
CAGGCTCTTGTGTGAAAACA+AGG + Chr1:7706861-7706880 MsG0180000550.01.T01:intron 45.0%
CCCTTGAAGGAGTAATGTGT+TGG + Chr1:7707804-7707823 MsG0180000550.01.T01:intron 45.0%
CCTTATATCAAAATGGGGGG+AGG + Chr1:7701865-7701884 MsG0180000550.01.T01:CDS 45.0%
CCTTGGAATTGGTTAAGGAC+CGG + Chr1:7708068-7708087 MsG0180000550.01.T01:intron 45.0%
CGTATTGTTGAGCACAATGG+CGG - Chr1:7706709-7706728 None:intergenic 45.0%
CTCATCTCTCTAGCTATCGA+TGG + Chr1:7704833-7704852 MsG0180000550.01.T01:intron 45.0%
CTTACCATAGCAGAAGACGA+AGG - Chr1:7704650-7704669 None:intergenic 45.0%
GAAGGAGTAATGTGTTGGAG+TGG + Chr1:7707809-7707828 MsG0180000550.01.T01:intron 45.0%
GAATTCTTGGTTGTCTGCCA+AGG - Chr1:7706032-7706051 None:intergenic 45.0%
GCACCAAATGCTTGGTAGAT+AGG - Chr1:7705402-7705421 None:intergenic 45.0%
GCACGTATTGTTGAGCACAA+TGG - Chr1:7706712-7706731 None:intergenic 45.0%
GCTCATTAACCCCAATCACT+TGG + Chr1:7705026-7705045 MsG0180000550.01.T01:intron 45.0%
GGAATTAAGGCAATTGGAGG+GGG - Chr1:7706148-7706167 None:intergenic 45.0%
GGAGGAATTAAGGCAATTGG+AGG - Chr1:7706151-7706170 None:intergenic 45.0%
GGTGAATAAGTGTGGTGTCT+CGG - Chr1:7703187-7703206 None:intergenic 45.0%
GGTGCAGTGGCTTCAATAAT+AGG + Chr1:7701556-7701575 MsG0180000550.01.T01:intron 45.0%
GGTTGCTCAACCCTTGAAAA+AGG + Chr1:7702596-7702615 MsG0180000550.01.T01:intron 45.0%
GTGAATAAGTGTGGTGTCTC+GGG - Chr1:7703186-7703205 None:intergenic 45.0%
GTTGAGCTAGGACTTCTAGA+CGG + Chr1:7703727-7703746 MsG0180000550.01.T01:intron 45.0%
TCATCCTTCGTCTTCTGCTA+TGG + Chr1:7704643-7704662 MsG0180000550.01.T01:intron 45.0%
TCCTCATAAGGCCCAACATT+AGG - Chr1:7702001-7702020 None:intergenic 45.0%
TCGAGTGTGTGTAATGAGTG+CGG + Chr1:7704546-7704565 MsG0180000550.01.T01:intron 45.0%
TCTGCTACGATTGTTGCTGT+GGG + Chr1:7699381-7699400 MsG0180000550.01.T01:CDS 45.0%
TGCTGAATACAGGCAATTCC+AGG + Chr1:7701200-7701219 MsG0180000550.01.T01:intron 45.0%
TGGATTGTGGAATTTGGCAG+AGG + Chr1:7705490-7705509 MsG0180000550.01.T01:intron 45.0%
TGGTAAAGGAAAGGCAAGAG+AGG + Chr1:7707503-7707522 MsG0180000550.01.T01:intron 45.0%
TGTTCATCATCTTGGTCCTC+AGG + Chr1:7699596-7699615 MsG0180000550.01.T01:CDS 45.0%
TTGAGTGAACTAGAAGGAGG+TGG - Chr1:7702674-7702693 None:intergenic 45.0%
TTGGAGGGGGTTATACAGTA+AGG - Chr1:7706135-7706154 None:intergenic 45.0%
TTGTCTGCAGTCAGAAATCC+CGG - Chr1:7700824-7700843 None:intergenic 45.0%
TTTGTCGTTGCTGGAGTTGT+TGG + Chr1:7699351-7699370 MsG0180000550.01.T01:CDS 45.0%
! AAGGCTTTTCTCACAAGGTG+GGG - Chr1:7705799-7705818 None:intergenic 45.0%
! AAGGGTGTAAATCCCGATAG+AGG - Chr1:7706734-7706753 None:intergenic 45.0%
! AGGTTAGTCGTGTCACAATC+AGG + Chr1:7699720-7699739 MsG0180000550.01.T01:intron 45.0%
! CTGATGCTTCGAGCTTTTCA+TGG + Chr1:7707336-7707355 MsG0180000550.01.T01:intron 45.0%
! GAAAGGCTTTTCTCACAAGG+TGG - Chr1:7705801-7705820 None:intergenic 45.0%
! GATACTTTCGCGAGGTGTTA+TGG + Chr1:7706350-7706369 MsG0180000550.01.T01:intron 45.0%
! GGTTAGTCGTGTCACAATCA+GGG + Chr1:7699721-7699740 MsG0180000550.01.T01:intron 45.0%
! TAGTATTGAGGTTCCAGGGT+TGG + Chr1:7699501-7699520 MsG0180000550.01.T01:CDS 45.0%
! TCCTAATGTTGGGCCTTATG+AGG + Chr1:7701997-7702016 MsG0180000550.01.T01:CDS 45.0%
! TGAGGAGTTGATTCCTTCTG+AGG + Chr1:7702015-7702034 MsG0180000550.01.T01:CDS 45.0%
! TGTGTGGTTTGCCTTGGAAT+TGG + Chr1:7708057-7708076 MsG0180000550.01.T01:intron 45.0%
!! CCTCCCCCCATTTTGATATA+AGG - Chr1:7701868-7701887 None:intergenic 45.0%
!! GCTGATTTGCAGAGTTTGTG+TGG + Chr1:7699523-7699542 MsG0180000550.01.T01:CDS 45.0%
!! TAGGGGGTAGTGGAAAATGT+AGG + Chr1:7700495-7700514 MsG0180000550.01.T01:intron 45.0%
!! TTCTGGTTTGGTGCTCTTCT+TGG + Chr1:7699552-7699571 MsG0180000550.01.T01:CDS 45.0%
!!! AGGCCTTATTTTGTCGTTGC+TGG + Chr1:7699342-7699361 MsG0180000550.01.T01:CDS 45.0%
!!! GTGTGGGTTTTGTTCTGGTT+TGG + Chr1:7699540-7699559 MsG0180000550.01.T01:CDS 45.0%
!! AAAAATATTGAAATTATATT+CGG + Chr1:7707456-7707475 MsG0180000550.01.T01:intron 5.0%
!!! AGTATAATTTTATTATTTTT+TGG - Chr1:7707259-7707278 None:intergenic 5.0%
!!! TAAAAAAAAATCATTTTTAA+CGG - Chr1:7705724-7705743 None:intergenic 5.0%
AAGAGGAATCTAGAGAGGGG+GGG - Chr1:7707862-7707881 None:intergenic 50.0%
ACACTCAACTATGAGGTCCC+AGG + Chr1:7703656-7703675 MsG0180000550.01.T01:intron 50.0%
AGAGATGGCTTCCATGCTTG+AGG - Chr1:7700557-7700576 None:intergenic 50.0%
AGCCGAGTTCTATTCCTAGG+TGG - Chr1:7704978-7704997 None:intergenic 50.0%
CCGGTCCTTAACCAATTCCA+AGG - Chr1:7708071-7708090 None:intergenic 50.0%
CGACATTCGTCAGTTGAGCT+AGG + Chr1:7703715-7703734 MsG0180000550.01.T01:intron 50.0%
CGTTGCTGGAGTTGTTGGAA+CGG + Chr1:7699356-7699375 MsG0180000550.01.T01:CDS 50.0%
GAAGAGGAATCTAGAGAGGG+GGG - Chr1:7707863-7707882 None:intergenic 50.0%
GACAAGACAAGACCGTACAG+TGG - Chr1:7704512-7704531 None:intergenic 50.0%
GAGAATTGGCAGGATTTGGG+TGG + Chr1:7705199-7705218 MsG0180000550.01.T01:intron 50.0%
GCAGAAGACGAAGGATGAAG+AGG - Chr1:7704641-7704660 None:intergenic 50.0%
GGAATTGGTTAAGGACCGGT+TGG + Chr1:7708072-7708091 MsG0180000550.01.T01:intron 50.0%
GGGCTTTCTTTGTGCATGTG+TGG + Chr1:7708041-7708060 MsG0180000550.01.T01:intron 50.0%
GTAATGTGTTGGAGTGGCAC+TGG + Chr1:7707815-7707834 MsG0180000550.01.T01:intron 50.0%
GTCTGCTACGATTGTTGCTG+TGG + Chr1:7699380-7699399 MsG0180000550.01.T01:CDS 50.0%
TCACACAAGAGCCTGTTTCC+AGG - Chr1:7706856-7706875 None:intergenic 50.0%
TGGTTACCTGCAGTGACTAC+CGG + Chr1:7700802-7700821 MsG0180000550.01.T01:intron 50.0%
TGGTTGTCTGCCAAGGAAGT+AGG - Chr1:7706025-7706044 None:intergenic 50.0%
TGTTAACCCTCCGGTTCCTA+GGG + Chr1:7704939-7704958 MsG0180000550.01.T01:intron 50.0%
! GAGGTACCTGAGAGAATGCA+GGG - Chr1:7700657-7700676 None:intergenic 50.0%
! TATGCGGGAGCTTTTGTGCA+CGG + Chr1:7706934-7706953 MsG0180000550.01.T01:intron 50.0%
! TATGTCGGCTATACTCCCGA+TGG + Chr1:7708265-7708284 MsG0180000550.01.T01:three_prime_UTR 50.0%
! TGTGCATGTGTGGTTTGCCT+TGG + Chr1:7708051-7708070 MsG0180000550.01.T01:intron 50.0%
!! AGAGGTACCTGAGAGAATGC+AGG - Chr1:7700658-7700677 None:intergenic 50.0%
!! ATTTTGGCGAGCAGGATCTG+TGG + Chr1:7706535-7706554 MsG0180000550.01.T01:intron 50.0%
!! TGCGGCGTTGATGTGTTTGT+TGG + Chr1:7699421-7699440 MsG0180000550.01.T01:CDS 50.0%
!! TTAGGGGTCGCTTGGTCTTA+TGG + Chr1:7700235-7700254 MsG0180000550.01.T01:intron 50.0%
AAGGTCACGGGTTCAAGTCC+TGG + Chr1:7706835-7706854 MsG0180000550.01.T01:intron 55.0%
AATCTAGAGAGGGGGGGGTA+AGG - Chr1:7707856-7707875 None:intergenic 55.0%
ACAAAAGCTCCCGCATACGC+AGG - Chr1:7706931-7706950 None:intergenic 55.0%
AGAGGAATCTAGAGAGGGGG+GGG - Chr1:7707861-7707880 None:intergenic 55.0%
ATCCTGCTGAAGTGACCCAG+AGG - Chr1:7702495-7702514 None:intergenic 55.0%
CAAAAGCTCCCGCATACGCA+GGG - Chr1:7706930-7706949 None:intergenic 55.0%
CATGACCCGGATTCGAACCT+GGG - Chr1:7703676-7703695 None:intergenic 55.0%
CGGGTTCAAGTCCTGGAAAC+AGG + Chr1:7706842-7706861 MsG0180000550.01.T01:intron 55.0%
CTCTGCAAATCAGCCAACCC+TGG - Chr1:7699517-7699536 None:intergenic 55.0%
GAAATCCCGGTAGTCACTGC+AGG - Chr1:7700811-7700830 None:intergenic 55.0%
GAAGGTTGCTCATAGGGCTC+AGG + Chr1:7702575-7702594 MsG0180000550.01.T01:intron 55.0%
GAGGTGAGTGAGTGTGGTTG+CGG + Chr1:7699403-7699422 MsG0180000550.01.T01:CDS 55.0%
GATCCCTTTCCCCTAGGAAC+CGG - Chr1:7704952-7704971 None:intergenic 55.0%
GCTACGATTGTTGCTGTGGG+AGG + Chr1:7699384-7699403 MsG0180000550.01.T01:CDS 55.0%
GGAAAGGGATCGTTCCACCT+AGG + Chr1:7704961-7704980 MsG0180000550.01.T01:intron 55.0%
GGTTACCTGCAGTGACTACC+GGG + Chr1:7700803-7700822 MsG0180000550.01.T01:intron 55.0%
GTGTTAACCCTCCGGTTCCT+AGG + Chr1:7704938-7704957 MsG0180000550.01.T01:intron 55.0%
GTTAACCCTCCGGTTCCTAG+GGG + Chr1:7704940-7704959 MsG0180000550.01.T01:intron 55.0%
TCATGACCCGGATTCGAACC+TGG - Chr1:7703677-7703696 None:intergenic 55.0%
TCCTGCTGAAGTGACCCAGA+GGG - Chr1:7702494-7702513 None:intergenic 55.0%
TGAGGTCCCAGGTTCGAATC+CGG + Chr1:7703667-7703686 MsG0180000550.01.T01:intron 55.0%
TGGAACGATCCCTTTCCCCT+AGG - Chr1:7704958-7704977 None:intergenic 55.0%
! ATGCGGGAGCTTTTGTGCAC+GGG + Chr1:7706935-7706954 MsG0180000550.01.T01:intron 55.0%
!!! ATACTTTTAGGGGGGCGCCT+TGG + Chr1:7706781-7706800 MsG0180000550.01.T01:intron 55.0%
AGAGAGGGGGGGGTAAGGAA+AGG - Chr1:7707851-7707870 None:intergenic 60.0%
AGTCGGCCCTGCATTCTCTC+AGG + Chr1:7700648-7700667 MsG0180000550.01.T01:intron 60.0%
CAAGGTCGGACGTCATGACC+CGG - Chr1:7703689-7703708 None:intergenic 60.0%
CCTCCGGTTCCTAGGGGAAA+GGG + Chr1:7704946-7704965 MsG0180000550.01.T01:intron 60.0%
CCTGCTGAAGTGACCCAGAG+GGG - Chr1:7702493-7702512 None:intergenic 60.0%
CCTTTCCCCTAGGAACCGGA+GGG - Chr1:7704948-7704967 None:intergenic 60.0%
CTGTGGGAGGTGAGTGAGTG+TGG + Chr1:7699397-7699416 MsG0180000550.01.T01:CDS 60.0%
GAGAGGGGGGGGTAAGGAAA+GGG - Chr1:7707850-7707869 None:intergenic 60.0%
GAGGTCCCAGGTTCGAATCC+GGG + Chr1:7703668-7703687 MsG0180000550.01.T01:intron 60.0%
! CCAAATGGTGGGACCCCTTC+CGG + Chr1:7706903-7706922 MsG0180000550.01.T01:intron 60.0%
!! GGGGTCGCTTGGTCTTATGG+CGG + Chr1:7700238-7700257 MsG0180000550.01.T01:intron 60.0%
CCCCTCTGGGTCACTTCAGC+AGG + Chr1:7702490-7702509 MsG0180000550.01.T01:intron 65.0%
CCCTCCGGTTCCTAGGGGAA+AGG + Chr1:7704945-7704964 MsG0180000550.01.T01:intron 65.0%
CCCTTTCCCCTAGGAACCGG+AGG - Chr1:7704949-7704968 None:intergenic 65.0%
CCGGAAGGGGTCCCACCATT+TGG - Chr1:7706906-7706925 None:intergenic 65.0%
CCTTCCGGACCCTGCGTATG+CGG + Chr1:7706918-7706937 MsG0180000550.01.T01:intron 65.0%
CGCATACGCAGGGTCCGGAA+GGG - Chr1:7706920-7706939 None:intergenic 65.0%
CTTCCGGACCCTGCGTATGC+GGG + Chr1:7706919-7706938 MsG0180000550.01.T01:intron 65.0%
GCATACGCAGGGTCCGGAAG+GGG - Chr1:7706919-7706938 None:intergenic 65.0%
CCGCATACGCAGGGTCCGGA+AGG - Chr1:7706921-7706940 None:intergenic 70.0%
GCTCCCGCATACGCAGGGTC+CGG - Chr1:7706925-7706944 None:intergenic 70.0%
!! AGGGGGGCGCCTTGGCACAA+CGG + Chr1:7706789-7706808 MsG0180000550.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 7699328 7708503 7699328 ID=MsG0180000550.01;Name=MsG0180000550.01
Chr1 mRNA 7699328 7708503 7699328 ID=MsG0180000550.01.T01;Parent=MsG0180000550.01;Name=MsG0180000550.01.T01;_AED=0.45;_eAED=0.48;_QI=0|0.33|0.5|1|0|0|4|301|263
Chr1 exon 7708112 7708503 7708112 ID=MsG0180000550.01.T01:exon:2828;Parent=MsG0180000550.01.T01
Chr1 exon 7707037 7707157 7707037 ID=MsG0180000550.01.T01:exon:2827;Parent=MsG0180000550.01.T01
Chr1 exon 7701760 7702049 7701760 ID=MsG0180000550.01.T01:exon:2826;Parent=MsG0180000550.01.T01
Chr1 exon 7699328 7699617 7699328 ID=MsG0180000550.01.T01:exon:2825;Parent=MsG0180000550.01.T01
Chr1 CDS 7699328 7699617 7699328 ID=MsG0180000550.01.T01:cds;Parent=MsG0180000550.01.T01
Chr1 CDS 7701760 7702049 7701760 ID=MsG0180000550.01.T01:cds;Parent=MsG0180000550.01.T01
Chr1 CDS 7707037 7707157 7707037 ID=MsG0180000550.01.T01:cds;Parent=MsG0180000550.01.T01
Chr1 CDS 7708112 7708202 7708112 ID=MsG0180000550.01.T01:cds;Parent=MsG0180000550.01.T01
Chr1 three_prime_UTR 7708203 7708503 7708203 ID=MsG0180000550.01.T01:three_prime_utr;Parent=MsG0180000550.01.T01
Gene Sequence

>MsG0180000550.01.T01

ATGGGATTCGTCGGAGGCCTTATTTTGTCGTTGCTGGAGTTGTTGGAACGGTGTCTGCTACGATTGTTGCTGTGGGAGGTGAGTGAGTGTGGTTGCGGCGTTGATGTGTTTGTTGGTGTGTCTGCTAGTCTTGCTATTGCTGATGTTACTATTGATGCTTGTATTGCAAGGAATAGTATTGAGGTTCCAGGGTTGGCTGATTTGCAGAGTTTGTGTGGGTTTTGTTCTGGTTTGGTGCTCTTCTTGGTTATCTTGCTAGTGGTTTCTTTGTTCATCATCTTGGTCCTCAGGCAAATAAGGTGGATGCCTATGATGGTACTAAGCACAAAACTATGTCCATTAGGAATTGAAGGAACATTTTTTGCTTTGTTAATGTGTATTGATAGCATTGGTGGCCTTATATCAAAATGGGGGGAGGGTTACTTCTACGTGCCCTTCATGTTACTAGAACTGATTTTACTAACTATGGTTGGCTGTTCTTTAAGAGACATTCTTAGATTTGTTACACTTGTTTTGGTTTTTCTTGTTCCTAATGTTGGGCCTTATGAGGAGTTGATTCCTTCTGAGGTTTGTGAAATGAGCATATGTGGACTGTATGAAAGGAAACTGAAGGACTTGAATCCAGCCGTCAGAAATATCTCTTATGATATCATGGATCTCTACAACTTCATAGACGGTCTTGCAGACATGAGTGCTCTAGTTTATGATGGTTCAAAGCATGCTTACTTTCCCTATGATCGAGAGTGGATTAAGGAACGAACCTTTCAACATTTGAAGAAATTGGCACGTTGA

Protein sequence

>MsG0180000550.01.T01

MGFVGGLILSLLELLERCLLRLLLWEVSECGCGVDVFVGVSASLAIADVTIDACIARNSIEVPGLADLQSLCGFCSGLVLFLVILLVVSLFIILVLRQIRWMPMMVLSTKLCPLGIEGTFFALLMCIDSIGGLISKWGEGYFYVPFMLLELILLTMVGCSLRDILRFVTLVLVFLVPNVGPYEELIPSEVCEMSICGLYERKLKDLNPAVRNISYDIMDLYNFIDGLADMSALVYDGSKHAYFPYDREWIKERTFQHLKKLAR*