AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880042794.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880042794.01.T01 MTR_8g022310 98.710 155 2 0 1 155 1 155 1.18e-110 313
MsG0880042794.01.T01 MTR_8g022310 98.710 155 2 0 1 155 1 155 1.64e-110 313
MsG0880042794.01.T01 MTR_8g022310 98.710 155 2 0 1 155 1 155 3.10e-110 314
MsG0880042794.01.T01 MTR_8g022310 98.710 155 2 0 1 155 1 155 3.22e-110 313
MsG0880042794.01.T01 MTR_8g022310 97.500 80 2 0 76 155 1 80 4.65e-50 158
MsG0880042794.01.T01 MTR_8g022310 96.970 66 2 0 90 155 7 72 9.91e-39 130
MsG0880042794.01.T01 MTR_7g112360 40.667 150 82 4 11 159 17 160 4.55e-31 110
MsG0880042794.01.T01 MTR_4g085070 43.571 140 72 4 3 138 5 141 6.19e-28 102
MsG0880042794.01.T01 MTR_7g112360 51.899 79 36 1 11 89 17 93 5.64e-24 91.3
MsG0880042794.01.T01 MTR_7g101070 49.333 75 33 1 6 80 354 423 3.87e-16 75.5
MsG0880042794.01.T01 MTR_2g014480 45.122 82 38 2 10 91 4 78 6.91e-16 74.3
MsG0880042794.01.T01 MTR_2g090705 49.275 69 30 1 10 78 4 67 1.57e-15 73.2
MsG0880042794.01.T01 MTR_4g109510 52.941 68 30 1 11 78 9 74 7.78e-15 72.0
MsG0880042794.01.T01 MTR_4g015840 46.377 69 32 1 10 78 4 67 1.45e-14 70.5
MsG0880042794.01.T01 MTR_2g014470 43.478 69 34 1 10 78 4 67 2.29e-14 70.1
MsG0880042794.01.T01 MTR_4g078850 44.928 69 33 1 10 78 4 67 3.15e-14 69.7
MsG0880042794.01.T01 MTR_7g092380 44.048 84 40 2 4 86 16 93 8.03e-14 68.2
MsG0880042794.01.T01 MTR_2g436580 45.000 80 37 2 9 88 109 181 8.96e-14 67.4
MsG0880042794.01.T01 MTR_3g108020 43.478 69 34 1 10 78 4 67 1.10e-13 68.2
MsG0880042794.01.T01 MTR_5g065860 38.947 95 43 3 7 97 45 128 1.34e-13 65.1
MsG0880042794.01.T01 MTR_7g109340 50.000 68 28 2 11 78 27 88 8.95e-13 65.5
MsG0880042794.01.T01 MTR_1g110310 41.026 78 40 1 9 86 15 86 1.06e-12 65.5
MsG0880042794.01.T01 MTR_1g052110 42.500 80 39 2 8 86 36 109 2.81e-12 63.9
MsG0880042794.01.T01 MTR_6g027110 47.143 70 34 2 10 78 2 69 3.01e-12 61.6
MsG0880042794.01.T01 MTR_5g012530 42.857 70 37 1 10 79 12 78 3.98e-12 63.9
MsG0880042794.01.T01 MTR_8g081620 44.118 68 34 1 11 78 61 124 4.15e-12 62.0
MsG0880042794.01.T01 MTR_6g027030 47.143 70 34 2 10 78 2 69 1.30e-11 61.2
MsG0880042794.01.T01 MTR_3g087030 44.928 69 31 1 10 78 82 143 1.31e-11 62.4
MsG0880042794.01.T01 MTR_2g436560 41.250 80 40 2 1 80 95 167 1.38e-11 62.4
MsG0880042794.01.T01 MTR_6g026940 48.485 66 31 2 10 74 2 65 1.60e-11 60.5
MsG0880042794.01.T01 MTR_3g027580 46.429 84 38 2 8 90 87 164 2.36e-11 61.6
MsG0880042794.01.T01 MTR_7g069480 42.466 73 35 1 7 79 24 89 3.85e-11 61.2
MsG0880042794.01.T01 MTR_5g037880 38.356 73 43 1 8 78 3 75 5.01e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880042794.01.T01 AT3G14200 72.358 123 28 3 10 129 12 131 6.53e-58 181
MsG0880042794.01.T01 AT1G72416 65.049 103 23 2 10 107 5 99 1.84e-40 135
MsG0880042794.01.T01 AT1G72416 63.810 105 25 2 10 109 5 101 2.00e-40 135
MsG0880042794.01.T01 AT1G72416 65.049 103 23 2 10 107 5 99 3.46e-40 135
MsG0880042794.01.T01 AT1G72416 65.049 103 23 2 10 107 5 99 5.31e-40 135
MsG0880042794.01.T01 AT1G56300 49.624 133 58 4 1 129 1 128 1.48e-33 117
MsG0880042794.01.T01 AT1G71000 44.048 168 72 7 4 163 2 155 2.13e-33 117
MsG0880042794.01.T01 AT1G71000 51.351 111 43 3 4 110 2 105 6.69e-29 105
MsG0880042794.01.T01 AT1G56300 51.818 110 47 3 1 106 1 108 1.13e-28 103
MsG0880042794.01.T01 AT1G72416 73.469 49 13 0 61 109 10 58 5.29e-19 79.7
MsG0880042794.01.T01 AT5G01390 49.275 69 30 1 10 78 4 67 9.94e-16 72.8
MsG0880042794.01.T01 AT5G01390 49.275 69 30 1 10 78 4 67 1.65e-15 72.8
MsG0880042794.01.T01 AT1G59725 46.377 69 33 1 10 78 4 68 2.23e-15 72.8
MsG0880042794.01.T01 AT5G01390 49.275 69 30 1 10 78 4 67 2.74e-15 72.8
MsG0880042794.01.T01 AT5G49060 46.914 81 35 3 7 86 96 169 3.49e-15 72.4
MsG0880042794.01.T01 AT5G49060 46.914 81 35 3 7 86 96 169 3.49e-15 72.4
MsG0880042794.01.T01 AT5G01390 49.275 69 30 1 10 78 4 67 4.11e-15 70.9
MsG0880042794.01.T01 AT5G03160 46.667 75 35 1 6 80 366 435 5.33e-15 72.4
MsG0880042794.01.T01 AT5G25530 44.928 69 33 1 10 78 4 67 1.69e-14 70.5
MsG0880042794.01.T01 AT4G28480 46.377 69 32 1 10 78 4 67 1.91e-14 70.1
MsG0880042794.01.T01 AT3G08910 46.377 69 32 1 10 78 4 67 2.34e-14 70.1
MsG0880042794.01.T01 AT4G28480 46.377 69 32 1 10 78 4 67 3.15e-14 69.7
MsG0880042794.01.T01 AT3G47940 42.857 70 36 1 10 79 4 69 8.21e-14 68.6
MsG0880042794.01.T01 AT1G10350 42.029 69 35 1 10 78 4 67 9.38e-14 68.6
MsG0880042794.01.T01 AT2G35720 42.308 78 42 1 2 79 7 81 9.90e-14 68.6
MsG0880042794.01.T01 AT5G16650 39.024 82 43 2 3 83 4 79 1.86e-13 64.3
MsG0880042794.01.T01 AT2G20560 44.928 69 33 1 10 78 4 67 2.42e-13 67.4
MsG0880042794.01.T01 AT5G16650 39.024 82 43 2 3 83 4 79 4.92e-13 64.3
MsG0880042794.01.T01 AT3G12170 38.793 116 61 4 1 113 1 109 6.58e-13 65.5
MsG0880042794.01.T01 AT2G33735 50.704 71 25 2 10 78 22 84 1.09e-12 62.0
MsG0880042794.01.T01 AT2G33735 50.704 71 25 2 10 78 22 84 1.09e-12 62.0
MsG0880042794.01.T01 AT3G12170 38.793 116 61 4 1 113 37 145 1.23e-12 65.1
MsG0880042794.01.T01 AT4G39960 39.785 93 43 3 9 97 84 167 2.03e-12 64.7
MsG0880042794.01.T01 AT4G39960 39.785 93 43 3 9 97 84 167 2.03e-12 64.7
MsG0880042794.01.T01 AT5G06910 35.556 135 54 5 1 130 19 125 2.29e-12 63.9
MsG0880042794.01.T01 AT5G25530 40.260 77 33 2 10 78 4 75 7.05e-12 63.2
MsG0880042794.01.T01 AT1G80030 42.254 71 34 1 8 78 73 136 7.31e-12 63.2
MsG0880042794.01.T01 AT1G80030 42.254 71 34 1 8 78 73 136 8.76e-12 63.2
MsG0880042794.01.T01 AT1G80030 42.254 71 34 1 8 78 73 136 8.76e-12 63.2
MsG0880042794.01.T01 AT1G80030 42.254 71 34 1 8 78 73 136 8.76e-12 63.2
MsG0880042794.01.T01 AT3G62600 48.529 68 29 2 11 78 27 88 1.37e-11 62.4
MsG0880042794.01.T01 AT5G48030 31.788 151 88 4 8 151 92 234 2.25e-11 62.0
MsG0880042794.01.T01 AT2G22360 42.029 69 33 1 10 78 86 147 5.62e-11 60.8
MsG0880042794.01.T01 AT2G41000 38.158 76 45 2 10 85 3 76 6.41e-11 58.9
MsG0880042794.01.T01 AT1G74250 42.647 68 38 1 11 78 12 78 7.28e-11 60.5

Find 45 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTAGTTGGTTGTGAAAATT+TGG 0.205516 8:-14134479 MsG0880042794.01.T01:five_prime_UTR
TGTTATTGTTGGAAATAATA+TGG 0.247286 8:-14134454 MsG0880042794.01.T01:exon
CAATGATTTCTATGCAGTTT+TGG 0.279803 8:-14134412 MsG0880042794.01.T01:CDS
CCAGATCGTTGTTCAGCTTC+AGG 0.283002 8:-14134071 MsG0880042794.01.T01:CDS
GGCTCACATTTGATTTAGTT+TGG 0.297419 8:+14132747 None:intergenic
CAAGCGGATATCGGATTAAA+TGG 0.298600 8:-14132016 MsG0880042794.01.T01:CDS
AGCACCTCTCTTAATGCTTC+GGG 0.329574 8:-14131992 MsG0880042794.01.T01:CDS
CTTCAACTTGGATGACAACT+TGG 0.330506 8:+14134721 None:intergenic
CTAATGTTTCTTTGTATTGT+CGG 0.332006 8:+14134547 None:intergenic
TTATATGTGATACAGGAAAA+TGG 0.333099 8:-14132085 MsG0880042794.01.T01:intron
GTTTGATATTGATTGGTTCT+TGG 0.333237 8:-14134525 MsG0880042794.01.T01:five_prime_UTR
AACATTAGTTTGATATTGAT+TGG 0.335782 8:-14134532 MsG0880042794.01.T01:five_prime_UTR
GTTCTTGGAGAATTCTAGTT+TGG 0.336191 8:-14134510 MsG0880042794.01.T01:five_prime_UTR
TATATAAAGTCTAGAATTAG+AGG 0.347820 8:-14134853 MsG0880042794.01.T01:five_prime_UTR
GCAATTCAAGAAGCCTATTC+TGG 0.348966 8:-14134008 MsG0880042794.01.T01:intron
AGAAGCTAAGAAGAAATTTC+AGG 0.357982 8:-14134030 MsG0880042794.01.T01:CDS
TCATCTACTTTCATGACTTT+CGG 0.362653 8:-14131959 MsG0880042794.01.T01:intron
GTTTGGTTGGTTGATCTAGT+TGG 0.390684 8:-14134493 MsG0880042794.01.T01:five_prime_UTR
AAGCACCTCTCTTAATGCTT+CGG 0.391365 8:-14131993 MsG0880042794.01.T01:CDS
GATATGTTTCAAGCGGATAT+CGG 0.410739 8:-14132025 MsG0880042794.01.T01:CDS
AAAATTTGGATTGTTATTGT+TGG 0.435217 8:-14134465 MsG0880042794.01.T01:five_prime_UTR
TTGGAGAATTCTAGTTTGGT+TGG 0.446669 8:-14134506 MsG0880042794.01.T01:five_prime_UTR
CAGATCGTTGTTCAGCTTCA+GGG 0.447334 8:-14134070 MsG0880042794.01.T01:CDS
TGCATGTAAATTACCAGAAT+AGG 0.452286 8:+14133995 None:intergenic
AAATGGAGAGGAGAGCTTTG+AGG 0.455188 8:-14132068 MsG0880042794.01.T01:CDS
CCTGAAGCTGAACAACGATC+TGG 0.468892 8:+14134071 None:intergenic
GGGAGACTTTCTGAACGAAA+TGG 0.482099 8:-14132783 MsG0880042794.01.T01:CDS
TTGGATGACAACTTGGGTTG+CGG 0.483218 8:+14134728 None:intergenic
GGAAATAATATGGCTAATGA+AGG 0.487826 8:-14134444 MsG0880042794.01.T01:exon
AATGCTCTGATTCAGAACTA+AGG 0.513112 8:-14134377 MsG0880042794.01.T01:CDS
TTCAGGGAATGTGAAGTTTG+TGG 0.516942 8:-14134054 MsG0880042794.01.T01:CDS
AGTCATGAAAGTAGATGAAG+TGG 0.538936 8:+14131964 None:intergenic
TGCTTATAAGAAACTTGCAC+TGG 0.543386 8:-14134352 MsG0880042794.01.T01:intron
TTCAACTTGGATGACAACTT+GGG 0.545053 8:+14134722 None:intergenic
ATTATCATTACCAATGAATG+AGG 0.552598 8:-14131309 MsG0880042794.01.T01:CDS
ATTAATATACAACTTCAACT+TGG 0.554791 8:+14134709 None:intergenic
ATTTGATGATATGTTTCAAG+CGG 0.571158 8:-14132032 MsG0880042794.01.T01:CDS
TTTAGACTAGATGGAATGAA+GGG 0.573998 8:+14134791 None:intergenic
ACAAAACAATGGAGTATGTG+TGG 0.600244 8:-14131284 MsG0880042794.01.T01:CDS
ATGTGTGGAGTATATAGAAG+TGG 0.620610 8:-14131269 MsG0880042794.01.T01:CDS
TGAATGAGGATACAAAACAA+TGG 0.645967 8:-14131295 MsG0880042794.01.T01:CDS
TGTGATACAGGAAAATGGAG+AGG 0.651222 8:-14132080 MsG0880042794.01.T01:intron
AAGAGATTAATGTACGACGT+TGG 0.670458 8:-14133831 MsG0880042794.01.T01:CDS
GCAACCCGAAGCATTAAGAG+AGG 0.689028 8:+14131988 None:intergenic
AGGTCTCTAGAGTATTCATG+AGG 0.690314 8:-14134833 MsG0880042794.01.T01:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTGCAAAAATATTAAAT+AGG + Chr8:14133419-14133438 None:intergenic 10.0%
!! TATTGCAAAAATATTAAATA+GGG + Chr8:14133418-14133437 None:intergenic 10.0%
!! TATTTAAAAAATAATTCAAG+TGG - Chr8:14133751-14133770 MsG0880042794.01.T01:intron 10.0%
!! TTGATTATATGAAAAAAAAT+CGG + Chr8:14132952-14132971 None:intergenic 10.0%
!!! CAAAATATATATTTTTTTCA+TGG - Chr8:14131918-14131937 MsG0880042794.01.T01:intron 10.0%
!!! TTTATATATTTTTTGTTTAG+TGG - Chr8:14133515-14133534 MsG0880042794.01.T01:intron 10.0%
!! AAAACAAATAATTTGAATCA+TGG + Chr8:14132229-14132248 None:intergenic 15.0%
!! AGGAAAATAATTTGATTAAA+TGG - Chr8:14132034-14132053 MsG0880042794.01.T01:CDS 15.0%
!! TGATTATATGAAAAAAAATC+GGG + Chr8:14132951-14132970 None:intergenic 15.0%
!!! AACAAGATATTATTTTATTG+TGG - Chr8:14133791-14133810 MsG0880042794.01.T01:intron 15.0%
!!! CTTTAAATTATACAAGATTT+TGG - Chr8:14134507-14134526 MsG0880042794.01.T01:five_prime_UTR 15.0%
!!! TCTCAATCTATTTTTTAAAA+CGG + Chr8:14132659-14132678 None:intergenic 15.0%
!!! TGAATAAACTTTAGAAAAAA+CGG + Chr8:14131886-14131905 None:intergenic 15.0%
!! AAAGTGAAAAGGTAAAATTA+AGG + Chr8:14132488-14132507 None:intergenic 20.0%
!! AACAAGACATAAACATTATT+AGG + Chr8:14133617-14133636 None:intergenic 20.0%
!! AACGAAAACAAGAAAAAAAA+TGG - Chr8:14132740-14132759 MsG0880042794.01.T01:intron 20.0%
!! AATGAATTGAAAGAGTTAAA+AGG + Chr8:14134008-14134027 None:intergenic 20.0%
!! ATGAATATTGAAACTGAATT+AGG - Chr8:14132540-14132559 MsG0880042794.01.T01:intron 20.0%
!! ATTAATATACAACTTCAACT+TGG + Chr8:14131435-14131454 None:intergenic 20.0%
!! ATTCAGTTTCAATATTCATT+AGG + Chr8:14132539-14132558 None:intergenic 20.0%
!! ATTTGAAAATAATTGTTGGA+AGG - Chr8:14133829-14133848 MsG0880042794.01.T01:CDS 20.0%
!! CAAGATTTGAAAATAATTGT+TGG - Chr8:14133825-14133844 MsG0880042794.01.T01:CDS 20.0%
!! GATTAATTTATATGTGATAC+AGG - Chr8:14134049-14134068 MsG0880042794.01.T01:CDS 20.0%
!! TATCTTTCTTTCACAAATTT+AGG + Chr8:14131964-14131983 None:intergenic 20.0%
!! TGAATATTGAAACTGAATTA+GGG - Chr8:14132541-14132560 MsG0880042794.01.T01:intron 20.0%
!! TGTTATTGTTGGAAATAATA+TGG - Chr8:14131687-14131706 MsG0880042794.01.T01:intron 20.0%
!! TTAACATGTAATTGAGTTAT+GGG - Chr8:14134479-14134498 MsG0880042794.01.T01:five_prime_UTR 20.0%
!! TTATAGCACATCAAAATTAT+TGG + Chr8:14133306-14133325 None:intergenic 20.0%
!! TTTAACATGTAATTGAGTTA+TGG - Chr8:14134478-14134497 MsG0880042794.01.T01:five_prime_UTR 20.0%
!!! AAAATGAATTTTGTTTTGCA+GGG - Chr8:14133332-14133351 MsG0880042794.01.T01:intron 20.0%
!!! AAAATTTGGATTGTTATTGT+TGG - Chr8:14131676-14131695 MsG0880042794.01.T01:intron 20.0%
!!! AACATTAGTTTGATATTGAT+TGG - Chr8:14131609-14131628 MsG0880042794.01.T01:intron 20.0%
!!! AATAATGTTTATGTCTTGTT+TGG - Chr8:14133617-14133636 MsG0880042794.01.T01:intron 20.0%
!!! AATGTAAATGGTGTTTTTTT+TGG - Chr8:14132265-14132284 MsG0880042794.01.T01:intron 20.0%
!!! AATTTGTGTTTTATTTGGTT+TGG - Chr8:14131558-14131577 MsG0880042794.01.T01:intron 20.0%
!!! AGTTAAAAGGATTGAAATTT+TGG + Chr8:14133995-14134014 None:intergenic 20.0%
!!! ATGATAGAAGATTTAGAATT+TGG - Chr8:14134540-14134559 MsG0880042794.01.T01:five_prime_UTR 20.0%
!!! ATGGAAATGAGTTAATTTTT+AGG - Chr8:14132759-14132778 MsG0880042794.01.T01:CDS 20.0%
!!! ATGTAAATGGTGTTTTTTTT+GGG - Chr8:14132266-14132285 MsG0880042794.01.T01:intron 20.0%
!!! GTTTAAAATAGTGACTTAAT+TGG + Chr8:14132829-14132848 None:intergenic 20.0%
!!! GTTTCTTACTTTTTATGTTA+AGG - Chr8:14131528-14131547 MsG0880042794.01.T01:intron 20.0%
!!! TAATCAATTTATGAAAGTAC+AGG + Chr8:14133934-14133953 None:intergenic 20.0%
!!! TATATAAAGTCTAGAATTAG+AGG - Chr8:14131288-14131307 MsG0880042794.01.T01:CDS 20.0%
!!! TTTCTAAAGTTTATTCACAT+GGG - Chr8:14131889-14131908 MsG0880042794.01.T01:intron 20.0%
!!! TTTGTGAAAGAAAGATATTT+TGG - Chr8:14131967-14131986 MsG0880042794.01.T01:CDS 20.0%
!!! TTTTCTAAAGTTTATTCACA+TGG - Chr8:14131888-14131907 MsG0880042794.01.T01:intron 20.0%
! AAAAAGAGATATGTTCTTCA+AGG - Chr8:14133080-14133099 MsG0880042794.01.T01:intron 25.0%
! AAAGTTGGAATTGTTTAGAA+AGG - Chr8:14132014-14132033 MsG0880042794.01.T01:CDS 25.0%
! AACAATGATATGGTCAATTT+CGG - Chr8:14132714-14132733 MsG0880042794.01.T01:intron 25.0%
! AAGAGGAGAAGAAAAATAAT+TGG + Chr8:14133052-14133071 None:intergenic 25.0%
! AATTCTACTCAGATGATTAT+GGG - Chr8:14134230-14134249 MsG0880042794.01.T01:intron 25.0%
! AGTAGTAACAACAAAAAGAT+AGG - Chr8:14134455-14134474 MsG0880042794.01.T01:exon 25.0%
! ATTATCATTACCAATGAATG+AGG - Chr8:14134832-14134851 MsG0880042794.01.T01:five_prime_UTR 25.0%
! ATTCATGGAATTGAATCAAA+TGG - Chr8:14133265-14133284 MsG0880042794.01.T01:intron 25.0%
! CTAATGTTTCTTTGTATTGT+CGG + Chr8:14131597-14131616 None:intergenic 25.0%
! GATTCAATTCCATGAATTAT+TGG + Chr8:14133262-14133281 None:intergenic 25.0%
! TAACATGTAATTGAGTTATG+GGG - Chr8:14134480-14134499 MsG0880042794.01.T01:five_prime_UTR 25.0%
! TAATCTATCTTCAGAGTAAT+TGG + Chr8:14134707-14134726 None:intergenic 25.0%
! TGTTTCTTCATTTACTTGAA+GGG - Chr8:14132446-14132465 MsG0880042794.01.T01:intron 25.0%
! TTAAGTGGTTAAGGAAAAAA+TGG - Chr8:14134724-14134743 MsG0880042794.01.T01:five_prime_UTR 25.0%
! TTATATGTGATACAGGAAAA+TGG - Chr8:14134056-14134075 MsG0880042794.01.T01:CDS 25.0%
! TTGAATGATTGTTTATTGTG+AGG - Chr8:14134403-14134422 MsG0880042794.01.T01:CDS 25.0%
! TTGTTAATGTGAAAGTGAAA+AGG + Chr8:14132499-14132518 None:intergenic 25.0%
! TTTGATTAAATGGACAGAAA+TGG - Chr8:14132044-14132063 MsG0880042794.01.T01:CDS 25.0%
!! AATGATTTCTATGCAGTTTT+GGG - Chr8:14131730-14131749 MsG0880042794.01.T01:intron 25.0%
!! ATAAACTTTAGAAAAAACGG+TGG + Chr8:14131883-14131902 None:intergenic 25.0%
!! ATTGTTGTTATGATGAAAGT+TGG - Chr8:14131999-14132018 MsG0880042794.01.T01:CDS 25.0%
!! ATTTGATGATATGTTTCAAG+CGG - Chr8:14134109-14134128 MsG0880042794.01.T01:intron 25.0%
!! TATAAGGATGATTTGATAGT+TGG - Chr8:14132565-14132584 MsG0880042794.01.T01:intron 25.0%
!! TATTGGGTCTAAAATGTAAA+TGG - Chr8:14132253-14132272 MsG0880042794.01.T01:intron 25.0%
!! TTGTTTCTTCATTTACTTGA+AGG - Chr8:14132445-14132464 MsG0880042794.01.T01:intron 25.0%
!!! AACATTTTTTTTTCCTCCTT+TGG + Chr8:14133142-14133161 None:intergenic 25.0%
!!! ACATTTTTTTTTCCTCCTTT+GGG + Chr8:14133141-14133160 None:intergenic 25.0%
!!! AGTCACTATTTTAAACCTAA+AGG - Chr8:14132833-14132852 MsG0880042794.01.T01:intron 25.0%
!!! GAAAATGAATTTTGTTTTGC+AGG - Chr8:14133331-14133350 MsG0880042794.01.T01:intron 25.0%
!!! GTACGAATTTGTGTTTTATT+TGG - Chr8:14131553-14131572 MsG0880042794.01.T01:intron 25.0%
!!! TTTTGTTGTTCATGTTATCA+AGG - Chr8:14134797-14134816 MsG0880042794.01.T01:five_prime_UTR 25.0%
!!! TTTTGTTTGCTTGTAATTAG+TGG - Chr8:14133446-14133465 MsG0880042794.01.T01:intron 25.0%
AGAAGCTAAGAAGAAATTTC+AGG - Chr8:14132111-14132130 MsG0880042794.01.T01:intron 30.0%
ATAACAATTCATGCTTCAGA+TGG + Chr8:14134667-14134686 None:intergenic 30.0%
ATAATTTGAATCATGGCTCA+TGG + Chr8:14132222-14132241 None:intergenic 30.0%
ATATGTTCTTCAAGGTTAGT+AGG - Chr8:14133088-14133107 MsG0880042794.01.T01:intron 30.0%
ATGAATGTTGCATCAAATGA+AGG + Chr8:14134342-14134361 None:intergenic 30.0%
CAATAAGAGCCAATAATTCA+TGG - Chr8:14133250-14133269 MsG0880042794.01.T01:intron 30.0%
CAATTCTACTCAGATGATTA+TGG - Chr8:14134229-14134248 MsG0880042794.01.T01:intron 30.0%
CCACTAATTAAAAGACTCAT+TGG + Chr8:14134772-14134791 None:intergenic 30.0%
GAAACTGAATTAGGGATATA+AGG - Chr8:14132549-14132568 MsG0880042794.01.T01:intron 30.0%
GAAGATAGATTAAGTGGTTA+AGG - Chr8:14134715-14134734 MsG0880042794.01.T01:five_prime_UTR 30.0%
GGAAATAATATGGCTAATGA+AGG - Chr8:14131697-14131716 MsG0880042794.01.T01:intron 30.0%
GGAGAAGAAAAATAATTGGA+CGG + Chr8:14133048-14133067 None:intergenic 30.0%
GTTTCAATATTCATTAGGCA+TGG + Chr8:14132534-14132553 None:intergenic 30.0%
TAATTGTTGGAAGGATAAAG+TGG - Chr8:14133838-14133857 MsG0880042794.01.T01:CDS 30.0%
TAATTTGAATCATGGCTCAT+GGG + Chr8:14132221-14132240 None:intergenic 30.0%
TCATCTACTTTCATGACTTT+CGG - Chr8:14134182-14134201 MsG0880042794.01.T01:intron 30.0%
TCTAGTTGGTTGTGAAAATT+TGG - Chr8:14131662-14131681 MsG0880042794.01.T01:intron 30.0%
TGAATGAGGATACAAAACAA+TGG - Chr8:14134846-14134865 MsG0880042794.01.T01:five_prime_UTR 30.0%
TGCATGTAAATTACCAGAAT+AGG + Chr8:14132149-14132168 None:intergenic 30.0%
TTCATTTGATGCAACATTCA+TGG - Chr8:14134341-14134360 MsG0880042794.01.T01:intron 30.0%
TTGAGAATGAATTTCTCTCT+TGG - Chr8:14132673-14132692 MsG0880042794.01.T01:intron 30.0%
TTTAGACTAGATGGAATGAA+GGG + Chr8:14131353-14131372 None:intergenic 30.0%
! AAACAGAAGTTCTGGTAATT+TGG + Chr8:14134282-14134301 None:intergenic 30.0%
! AATTACCAGAACTTCTGTTT+TGG - Chr8:14134282-14134301 MsG0880042794.01.T01:intron 30.0%
! ATTACCAGAACTTCTGTTTT+GGG - Chr8:14134283-14134302 MsG0880042794.01.T01:intron 30.0%
! CAATGATTTCTATGCAGTTT+TGG - Chr8:14131729-14131748 MsG0880042794.01.T01:intron 30.0%
! GTTTGATATTGATTGGTTCT+TGG - Chr8:14131616-14131635 MsG0880042794.01.T01:intron 30.0%
! TACTCTGAAGATAGATTAAG+TGG - Chr8:14134709-14134728 MsG0880042794.01.T01:five_prime_UTR 30.0%
! TGTTTTGTATCCTCATTCAT+TGG + Chr8:14134845-14134864 None:intergenic 30.0%
! TTTTAGACTAGATGGAATGA+AGG + Chr8:14131354-14131373 None:intergenic 30.0%
!! CCAATGAGTCTTTTAATTAG+TGG - Chr8:14134769-14134788 MsG0880042794.01.T01:five_prime_UTR 30.0%
!!! AATTTTGTTTTGCAGGGTAT+GGG - Chr8:14133338-14133357 MsG0880042794.01.T01:intron 30.0%
!!! GCATTTTGTTTTAGACTAGA+TGG + Chr8:14131362-14131381 None:intergenic 30.0%
AAGAGATTAATGTACGACGT+TGG - Chr8:14132310-14132329 MsG0880042794.01.T01:intron 35.0%
AATGCTCTGATTCAGAACTA+AGG - Chr8:14131764-14131783 MsG0880042794.01.T01:intron 35.0%
AATTAGTGGAACGTTAGGTT+AGG - Chr8:14133460-14133479 MsG0880042794.01.T01:intron 35.0%
ACAAAACAATGGAGTATGTG+TGG - Chr8:14134857-14134876 MsG0880042794.01.T01:five_prime_UTR 35.0%
ACACCAACTTTCATAGCAAT+TGG + Chr8:14133644-14133663 None:intergenic 35.0%
AGGCACAACTACATAGTATT+AGG + Chr8:14133573-14133592 None:intergenic 35.0%
AGTCATGAAAGTAGATGAAG+TGG + Chr8:14134180-14134199 None:intergenic 35.0%
ATGTGTGGAGTATATAGAAG+TGG - Chr8:14134872-14134891 MsG0880042794.01.T01:five_prime_UTR 35.0%
ATTTCACACCATTCATGAGT+TGG - Chr8:14132372-14132391 MsG0880042794.01.T01:intron 35.0%
CATGGAATTGAATCAAATGG+AGG - Chr8:14133268-14133287 MsG0880042794.01.T01:intron 35.0%
CTTGTAATTAGTGGAACGTT+AGG - Chr8:14133455-14133474 MsG0880042794.01.T01:intron 35.0%
GATATGTTTCAAGCGGATAT+CGG - Chr8:14134116-14134135 MsG0880042794.01.T01:intron 35.0%
GGCAAACATATAGCATAGTA+AGG - Chr8:14134362-14134381 MsG0880042794.01.T01:CDS 35.0%
GGTTAGAGTAGAAACAAAGA+CGG + Chr8:14131855-14131874 None:intergenic 35.0%
TATCTTCAGAGTAATTGGCA+AGG + Chr8:14134702-14134721 None:intergenic 35.0%
TATGTGTCACATAACACATG+TGG - Chr8:14133202-14133221 MsG0880042794.01.T01:intron 35.0%
TCACTGTCTTCTTTACCTTT+AGG + Chr8:14132851-14132870 None:intergenic 35.0%
TGCTTATAAGAAACTTGCAC+TGG - Chr8:14131789-14131808 MsG0880042794.01.T01:intron 35.0%
TGTTACTACTTACTACCCAT+AGG + Chr8:14134445-14134464 None:intergenic 35.0%
TTAAAGATCAGAGTGATGAG+CGG - Chr8:14132595-14132614 MsG0880042794.01.T01:intron 35.0%
TTCAACTTGGATGACAACTT+GGG + Chr8:14131422-14131441 None:intergenic 35.0%
TTGACCATATCATTGTTTCG+TGG + Chr8:14132711-14132730 None:intergenic 35.0%
TTTCACACCATTCATGAGTT+GGG - Chr8:14132373-14132392 MsG0880042794.01.T01:intron 35.0%
! AACTTTAGAAAAAACGGTGG+AGG + Chr8:14131880-14131899 None:intergenic 35.0%
! AAGGATGATTTGATAGTTGG+TGG - Chr8:14132568-14132587 MsG0880042794.01.T01:intron 35.0%
! ACTTTAGAAAAAACGGTGGA+GGG + Chr8:14131879-14131898 None:intergenic 35.0%
! AGGATGATTTGATAGTTGGT+GGG - Chr8:14132569-14132588 MsG0880042794.01.T01:intron 35.0%
! AGTTGTGCCTTTTTACCTTT+TGG - Chr8:14133583-14133602 MsG0880042794.01.T01:intron 35.0%
! CTTTGGGAAAGACATTTGTT+GGG + Chr8:14133125-14133144 None:intergenic 35.0%
! GGCTCACATTTGATTTAGTT+TGG + Chr8:14133397-14133416 None:intergenic 35.0%
! GTTCTTGGAGAATTCTAGTT+TGG - Chr8:14131631-14131650 MsG0880042794.01.T01:intron 35.0%
! GTTGTGCCTTTTTACCTTTT+GGG - Chr8:14133584-14133603 MsG0880042794.01.T01:intron 35.0%
! TTACCAGAACTTCTGTTTTG+GGG - Chr8:14134284-14134303 MsG0880042794.01.T01:intron 35.0%
! TTTGGGAAAGACATTTGTTG+GGG + Chr8:14133124-14133143 None:intergenic 35.0%
!! AATTGCTATGAAAGTTGGTG+TGG - Chr8:14133643-14133662 MsG0880042794.01.T01:intron 35.0%
!! TTGGAGAATTCTAGTTTGGT+TGG - Chr8:14131635-14131654 MsG0880042794.01.T01:intron 35.0%
!!! CCTTTTTACCTTTTGGGATT+GGG - Chr8:14133590-14133609 MsG0880042794.01.T01:intron 35.0%
!!! GAATTTTGTTTTGCAGGGTA+TGG - Chr8:14133337-14133356 MsG0880042794.01.T01:intron 35.0%
!!! TCTCTTTTTTCACGTGAAAG+AGG + Chr8:14133069-14133088 None:intergenic 35.0%
!!! TGCAGTTTTGGGATTGAATA+AGG - Chr8:14131741-14131760 MsG0880042794.01.T01:intron 35.0%
AAGCACCTCTCTTAATGCTT+CGG - Chr8:14134148-14134167 MsG0880042794.01.T01:intron 40.0%
ACAAATGTCTTTCCCAAAGG+AGG - Chr8:14133126-14133145 MsG0880042794.01.T01:intron 40.0%
ATAAAGTGGTTTACTGGACC+GGG - Chr8:14133852-14133871 MsG0880042794.01.T01:intron 40.0%
CAAGCGGATATCGGATTAAA+TGG - Chr8:14134125-14134144 MsG0880042794.01.T01:intron 40.0%
CCAACAAATGTCTTTCCCAA+AGG - Chr8:14133123-14133142 MsG0880042794.01.T01:intron 40.0%
CCCAATCCCAAAAGGTAAAA+AGG + Chr8:14133593-14133612 None:intergenic 40.0%
CCTTTACTTGTTTGGCCTAT+GGG - Chr8:14134427-14134446 MsG0880042794.01.T01:CDS 40.0%
CTACTCAGATGATTATGGGA+AGG - Chr8:14134234-14134253 MsG0880042794.01.T01:intron 40.0%
CTTCAACTTGGATGACAACT+TGG + Chr8:14131423-14131442 None:intergenic 40.0%
GATAAAGTGGTTTACTGGAC+CGG - Chr8:14133851-14133870 MsG0880042794.01.T01:CDS 40.0%
GATAGCAAGTGAAAGAGAAG+AGG + Chr8:14132402-14132421 None:intergenic 40.0%
GATGCAACTATTGTAGTCGT+TGG - Chr8:14134584-14134603 MsG0880042794.01.T01:five_prime_UTR 40.0%
GCAATTCAAGAAGCCTATTC+TGG - Chr8:14132133-14132152 MsG0880042794.01.T01:intron 40.0%
GCTTCCACGAAACAATGATA+TGG - Chr8:14132704-14132723 MsG0880042794.01.T01:intron 40.0%
GGAAGGATAAAGTGGTTTAC+TGG - Chr8:14133846-14133865 MsG0880042794.01.T01:CDS 40.0%
GGTCCAATTGCTATGAAAGT+TGG - Chr8:14133638-14133657 MsG0880042794.01.T01:intron 40.0%
TAAAGATCAGAGTGATGAGC+GGG - Chr8:14132596-14132615 MsG0880042794.01.T01:intron 40.0%
TATTAGGACCCAATCCCAAA+AGG + Chr8:14133601-14133620 None:intergenic 40.0%
TCCTTTACTTGTTTGGCCTA+TGG - Chr8:14134426-14134445 MsG0880042794.01.T01:CDS 40.0%
TGCAACGAATGCACATTTGT+TGG + Chr8:14134621-14134640 None:intergenic 40.0%
TGTGAGGTCCTTTACTTGTT+TGG - Chr8:14134419-14134438 MsG0880042794.01.T01:CDS 40.0%
TGTGATACAGGAAAATGGAG+AGG - Chr8:14134061-14134080 MsG0880042794.01.T01:CDS 40.0%
TTCAGGGAATGTGAAGTTTG+TGG - Chr8:14132087-14132106 MsG0880042794.01.T01:intron 40.0%
TTCATGACTTTCGGTGAAAG+CGG - Chr8:14134191-14134210 MsG0880042794.01.T01:intron 40.0%
! AATGCACATTTGTTGGATCC+TGG + Chr8:14134614-14134633 None:intergenic 40.0%
! CCTTTGGGAAAGACATTTGT+TGG + Chr8:14133126-14133145 None:intergenic 40.0%
! GTTTGGTTGGTTGATCTAGT+TGG - Chr8:14131648-14131667 MsG0880042794.01.T01:intron 40.0%
!! AGGTCTCTAGAGTATTCATG+AGG - Chr8:14131308-14131327 MsG0880042794.01.T01:CDS 40.0%
!!! GCCTTTTTACCTTTTGGGAT+TGG - Chr8:14133589-14133608 MsG0880042794.01.T01:intron 40.0%
AAATGGAGAGGAGAGCTTTG+AGG - Chr8:14134073-14134092 MsG0880042794.01.T01:CDS 45.0%
AGATGATTATGGGAAGGCAG+AGG - Chr8:14134240-14134259 MsG0880042794.01.T01:intron 45.0%
AGCACCTCTCTTAATGCTTC+GGG - Chr8:14134149-14134168 MsG0880042794.01.T01:intron 45.0%
CAGATCGTTGTTCAGCTTCA+GGG - Chr8:14132071-14132090 MsG0880042794.01.T01:CDS 45.0%
CCCATAGGCCAAACAAGTAA+AGG + Chr8:14134430-14134449 None:intergenic 45.0%
GGGAGACTTTCTGAACGAAA+TGG - Chr8:14133358-14133377 MsG0880042794.01.T01:intron 45.0%
TATTGTACGAACACACAGCC+CGG + Chr8:14133873-14133892 None:intergenic 45.0%
TCACATAACACATGTGGCAG+TGG - Chr8:14133208-14133227 MsG0880042794.01.T01:intron 45.0%
TCATGACTTTCGGTGAAAGC+GGG - Chr8:14134192-14134211 MsG0880042794.01.T01:intron 45.0%
TGACCCCAAAACAGAAGTTC+TGG + Chr8:14134290-14134309 None:intergenic 45.0%
TTAGAAAAAACGGTGGAGGG+TGG + Chr8:14131876-14131895 None:intergenic 45.0%
! TGTGGTGGGGGTATATTGTT+GGG - Chr8:14133661-14133680 MsG0880042794.01.T01:intron 45.0%
! TTGGATGACAACTTGGGTTG+CGG + Chr8:14131416-14131435 None:intergenic 45.0%
!! CTATGAAAGTTGGTGTGGTG+GGG - Chr8:14133648-14133667 MsG0880042794.01.T01:intron 45.0%
!! GCTATGAAAGTTGGTGTGGT+GGG - Chr8:14133647-14133666 MsG0880042794.01.T01:intron 45.0%
!! TATGAAAGTTGGTGTGGTGG+GGG - Chr8:14133649-14133668 MsG0880042794.01.T01:intron 45.0%
!! TGCTATGAAAGTTGGTGTGG+TGG - Chr8:14133646-14133665 MsG0880042794.01.T01:intron 45.0%
!!! GGCAGAGGATCTTCTAGTTT+TGG - Chr8:14134255-14134274 MsG0880042794.01.T01:intron 45.0%
!!! AATTATTTGTTTTTATATAT+TGG - Chr8:14132236-14132255 MsG0880042794.01.T01:intron 5.0%
!!! ATTATTTGTTTTTATATATT+GGG - Chr8:14132237-14132256 MsG0880042794.01.T01:intron 5.0%
ATCCTCGACAACAGCAACAC+TGG + Chr8:14134644-14134663 None:intergenic 50.0%
ATTGTAGTCGTTGGATCGCC+AGG - Chr8:14134593-14134612 MsG0880042794.01.T01:five_prime_UTR 50.0%
CCAGATCGTTGTTCAGCTTC+AGG - Chr8:14132070-14132089 MsG0880042794.01.T01:CDS 50.0%
CCTGAAGCTGAACAACGATC+TGG + Chr8:14132073-14132092 None:intergenic 50.0%
GAGGAGTCCCAACTCATGAA+TGG + Chr8:14132383-14132402 None:intergenic 50.0%
! GCAACCCGAAGCATTAAGAG+AGG + Chr8:14134156-14134175 None:intergenic 50.0%
! GTGGTGGGGGTATATTGTTG+GGG - Chr8:14133662-14133681 MsG0880042794.01.T01:intron 50.0%
! GTGTGGTGGGGGTATATTGT+TGG - Chr8:14133660-14133679 MsG0880042794.01.T01:intron 50.0%
! CACCAGTGTTGCTGTTGTCG+AGG - Chr8:14134639-14134658 MsG0880042794.01.T01:five_prime_UTR 55.0%
Chromosome Type Strat End Strand Name
Chr8 gene 14131262 14134901 14131262 ID=MsG0880042794.01;Name=MsG0880042794.01
Chr8 mRNA 14131262 14134901 14131262 ID=MsG0880042794.01.T01;Parent=MsG0880042794.01;Name=MsG0880042794.01.T01;_AED=0.41;_eAED=0.41;_QI=444|0.8|0.66|1|0.8|0.66|6|0|179
Chr8 exon 14131262 14131344 14131262 ID=MsG0880042794.01.T01:exon:3826;Parent=MsG0880042794.01.T01
Chr8 exon 14131960 14132092 14131960 ID=MsG0880042794.01.T01:exon:3825;Parent=MsG0880042794.01.T01
Chr8 exon 14132754 14132810 14132754 ID=MsG0880042794.01.T01:exon:3824;Parent=MsG0880042794.01.T01
Chr8 exon 14133803 14133870 14133803 ID=MsG0880042794.01.T01:exon:3823;Parent=MsG0880042794.01.T01
Chr8 exon 14134009 14134102 14134009 ID=MsG0880042794.01.T01:exon:3822;Parent=MsG0880042794.01.T01
Chr8 exon 14134353 14134901 14134353 ID=MsG0880042794.01.T01:exon:3821;Parent=MsG0880042794.01.T01
Chr8 five_prime_UTR 14134458 14134901 14134458 ID=MsG0880042794.01.T01:five_prime_utr;Parent=MsG0880042794.01.T01
Chr8 CDS 14134353 14134457 14134353 ID=MsG0880042794.01.T01:cds;Parent=MsG0880042794.01.T01
Chr8 CDS 14134009 14134102 14134009 ID=MsG0880042794.01.T01:cds;Parent=MsG0880042794.01.T01
Chr8 CDS 14133803 14133870 14133803 ID=MsG0880042794.01.T01:cds;Parent=MsG0880042794.01.T01
Chr8 CDS 14132754 14132810 14132754 ID=MsG0880042794.01.T01:cds;Parent=MsG0880042794.01.T01
Chr8 CDS 14131960 14132092 14131960 ID=MsG0880042794.01.T01:cds;Parent=MsG0880042794.01.T01
Chr8 CDS 14131262 14131344 14131262 ID=MsG0880042794.01.T01:cds;Parent=MsG0880042794.01.T01
Gene Sequence

>MsG0880042794.01.T01

ATGGCTAATGAAGGAAACAAAAGCAATGATTTCTATGCAGTTTTGGGATTGAATAAGGAATGCTCTGATTCAGAACTAAGGAATGCTTATAAGAAACTTGCACTGAAATGGCATCCAGATCGTTGTTCAGCTTCAGGGAATGTGAAGTTTGTGGAAGAAGCTAAGAAGAAATTTCAGGCAATTCAAGAAGCCTATTCTGTTTTATCTGACTCGAACAAGAGATTAATGTACGACGTTGGAGTTTACGACAGTGATGATGACGAAAATGGTATGGGAGACTTTCTGAACGAAATGGTTACAATGATGAGCCAAACTAAATCAAATGAAAATGGAGAGGAGAGCTTTGAGGAGTTGCAACAGTTATTTGATGATATGTTTCAAGCGGATATCGGATTAAATGGAAGCACCTCTCTTAATGCTTCGGGTTGCTCCACTTCATCTACTTTCATGACTTTCGGTCAATCTTGTAAATTATCATTACCAATGAATGAGGATACAAAACAATGGAGTATGTGTGGAGTATATAGAAGTGGTAAGTGA

Protein sequence

>MsG0880042794.01.T01

MANEGNKSNDFYAVLGLNKECSDSELRNAYKKLALKWHPDRCSASGNVKFVEEAKKKFQAIQEAYSVLSDSNKRLMYDVGVYDSDDDENGMGDFLNEMVTMMSQTKSNENGEESFEELQQLFDDMFQADIGLNGSTSLNASGCSTSSTFMTFGQSCKLSLPMNEDTKQWSMCGVYRSGK*