Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025349.01.T01 | XP_003612596.2 | 98.367 | 490 | 8 | 0 | 15 | 504 | 2 | 491 | 0 | 978 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025349.01.T01 | Q9C6S5 | 71.399 | 486 | 130 | 5 | 13 | 493 | 1 | 482 | 0 | 711 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025349.01.T01 | G7K6T4 | 98.367 | 490 | 8 | 0 | 15 | 504 | 2 | 491 | 0.0 | 978 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0580025349.01 | MsG0780036845.01 | 0.800789 | 1.222126e-48 | 5.741200e-46 |
| MsG0580025349.01 | MsG0880046163.01 | 0.806133 | 9.537373e-50 | 5.136496e-47 |
| MsG0580025349.01 | MsG0880046561.01 | 0.816749 | 4.710205e-52 | 3.366096e-49 |
| MsG0280007484.01 | MsG0580025349.01 | 0.837859 | 4.053821e-57 | 5.334820e-54 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0580024057.01 | MsG0580025349.01 | PPI |
| MsG0580025349.01 | MsG0280007044.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025349.01.T01 | MTR_5g026780 | 98.367 | 490 | 8 | 0 | 15 | 504 | 2 | 491 | 0.0 | 978 |
| MsG0580025349.01.T01 | MTR_5g026780 | 98.526 | 475 | 7 | 0 | 30 | 504 | 1 | 475 | 0.0 | 948 |
| MsG0580025349.01.T01 | MTR_0031s0060 | 71.919 | 495 | 98 | 5 | 23 | 503 | 92 | 559 | 0.0 | 712 |
| MsG0580025349.01.T01 | MTR_1g112950 | 73.438 | 448 | 116 | 2 | 47 | 492 | 12 | 458 | 0.0 | 673 |
| MsG0580025349.01.T01 | MTR_5g005160 | 57.044 | 433 | 184 | 2 | 53 | 484 | 4 | 435 | 3.65e-171 | 492 |
| MsG0580025349.01.T01 | MTR_8g085630 | 48.073 | 441 | 227 | 2 | 47 | 485 | 28 | 468 | 1.67e-150 | 439 |
| MsG0580025349.01.T01 | MTR_5g064750 | 47.166 | 441 | 231 | 2 | 54 | 492 | 20 | 460 | 1.75e-136 | 402 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025349.01.T01 | AT1G31830 | 71.399 | 486 | 130 | 5 | 13 | 493 | 1 | 482 | 0.0 | 711 |
| MsG0580025349.01.T01 | AT1G31830 | 73.233 | 467 | 119 | 4 | 32 | 493 | 1 | 466 | 0.0 | 706 |
| MsG0580025349.01.T01 | AT5G05630 | 66.053 | 489 | 159 | 2 | 8 | 495 | 8 | 490 | 0.0 | 677 |
| MsG0580025349.01.T01 | AT1G31820 | 69.091 | 440 | 135 | 1 | 54 | 493 | 31 | 469 | 0.0 | 617 |
| MsG0580025349.01.T01 | AT3G19553 | 55.794 | 466 | 199 | 5 | 39 | 501 | 2 | 463 | 5.90e-178 | 509 |
| MsG0580025349.01.T01 | AT3G13620 | 46.947 | 475 | 245 | 7 | 30 | 500 | 1 | 472 | 6.97e-141 | 414 |
Find 121 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCTTTCAGGTTTCATTTC+TGG | 0.066003 | 5:-17281949 | None:intergenic |
| GCAGCCTTGTCTCAAATTTA+TGG | 0.146769 | 5:+17282695 | MsG0580025349.01.T01:CDS |
| GTCTCAACAAACCATCTTTC+AGG | 0.214862 | 5:-17281961 | None:intergenic |
| AATTCCAATCAACGTCATTT+AGG | 0.226372 | 5:-17281987 | None:intergenic |
| TCTTACTTATTTGAACTATA+GGG | 0.250588 | 5:+17281843 | MsG0580025349.01.T01:CDS |
| GGACTTGTTGCTGTTTGTTT+AGG | 0.252050 | 5:+17281880 | MsG0580025349.01.T01:CDS |
| GTTTGGGTTTCGTCTGCTTT+AGG | 0.254304 | 5:+17281661 | MsG0580025349.01.T01:CDS |
| CTCATCTTCTATGAGGTATC+AGG | 0.259870 | 5:+17281487 | MsG0580025349.01.T01:CDS |
| GACTTGTTGCTGTTTGTTTA+GGG | 0.269303 | 5:+17281881 | MsG0580025349.01.T01:CDS |
| TCCTCATGTGATTTGCTCTT+GGG | 0.281304 | 5:-17281438 | None:intergenic |
| GAGAATTTCTTGTACTGTAT+TGG | 0.285105 | 5:+17282471 | MsG0580025349.01.T01:CDS |
| CGTCACGGAACACCTCTTAT+AGG | 0.288096 | 5:+17282381 | MsG0580025349.01.T01:CDS |
| GTACTGTATTGGAATGATTC+TGG | 0.296739 | 5:+17282482 | MsG0580025349.01.T01:CDS |
| AAAATAGTGGTTATGTTGTT+TGG | 0.305948 | 5:+17281644 | MsG0580025349.01.T01:CDS |
| TATATTTGAATACGCTGTTT+TGG | 0.313685 | 5:+17282010 | MsG0580025349.01.T01:CDS |
| TTATCTTAAGTCAGCGGTTC+CGG | 0.313847 | 5:+17281768 | MsG0580025349.01.T01:CDS |
| CTGGTGTGATTCTACTATCT+TGG | 0.316221 | 5:+17282421 | MsG0580025349.01.T01:CDS |
| TTCCTCATGTGATTTGCTCT+TGG | 0.325329 | 5:-17281439 | None:intergenic |
| TTCACCAGCAAGAGTACTTA+TGG | 0.329309 | 5:-17282052 | None:intergenic |
| GGTCCTTTGTTAGCTTTACT+TGG | 0.330196 | 5:+17281547 | MsG0580025349.01.T01:CDS |
| TCTGAAATTGCTATGATCAT+TGG | 0.341902 | 5:+17282213 | MsG0580025349.01.T01:CDS |
| TACTTCTTTCCTCTTCTGAT+TGG | 0.345365 | 5:+17282141 | MsG0580025349.01.T01:CDS |
| TTCTTACTTATTTGAACTAT+AGG | 0.348712 | 5:+17281842 | MsG0580025349.01.T01:CDS |
| AGCGACTCTTATCAGCTTCT+AGG | 0.352816 | 5:+17282312 | MsG0580025349.01.T01:CDS |
| ATAAGAGTCGCTACTCATTT+CGG | 0.353147 | 5:-17282301 | None:intergenic |
| TCCTCTCCATTGACAAAATC+AGG | 0.367559 | 5:-17282759 | None:intergenic |
| AGCTTTGATTACTGCTGAAA+TGG | 0.368117 | 5:+17281606 | MsG0580025349.01.T01:CDS |
| TTCAGCAGGGTTGGATGAAA+TGG | 0.368473 | 5:+17281698 | MsG0580025349.01.T01:CDS |
| GTCACGGAACACCTCTTATA+GGG | 0.371487 | 5:+17282382 | MsG0580025349.01.T01:CDS |
| CTTGTATGGCCGAGGTGCGT+TGG | 0.376993 | 5:-17282541 | None:intergenic |
| TTGTATGGCCGAGGTGCGTT+GGG | 0.377235 | 5:-17282540 | None:intergenic |
| CAAACCTAAATGACGTTGAT+TGG | 0.381343 | 5:+17281983 | MsG0580025349.01.T01:CDS |
| GAGGTATCAGGAGGACCTTT+TGG | 0.385759 | 5:+17281499 | MsG0580025349.01.T01:CDS |
| GTCCACAGCTCGCGCTGAAC+AGG | 0.387861 | 5:-17282177 | None:intergenic |
| TCAGCAGTAATCAAAGCTTC+AGG | 0.389410 | 5:-17281601 | None:intergenic |
| TATAGGGGTTTAACCATTGT+TGG | 0.391261 | 5:+17281859 | MsG0580025349.01.T01:CDS |
| AAATAGTGGTTATGTTGTTT+GGG | 0.402210 | 5:+17281645 | MsG0580025349.01.T01:CDS |
| AAGGTACCAGGCGGAACGAC+TGG | 0.402981 | 5:+17282561 | MsG0580025349.01.T01:CDS |
| TGGAGAGGACACTCAATCTT+TGG | 0.404986 | 5:+17282773 | MsG0580025349.01.T01:CDS |
| TCTTATAAGCGTCGTTGCTA+TGG | 0.419274 | 5:+17282656 | MsG0580025349.01.T01:CDS |
| GACTCCATAAGTACTCTTGC+TGG | 0.422201 | 5:+17282048 | MsG0580025349.01.T01:CDS |
| CAAAGCATAAAACAAACCTT+TGG | 0.423701 | 5:-17282100 | None:intergenic |
| CACGTACTCGCTCCCGGTCC+CGG | 0.431626 | 5:-17281395 | None:intergenic |
| GGTTCTAGTGCAATGGCAAT+GGG | 0.433376 | 5:+17281364 | MsG0580025349.01.T01:CDS |
| CGCTTATAAGAAATACTTTG+AGG | 0.440103 | 5:-17282644 | None:intergenic |
| GTTCCGCCTGGTACCTTGTA+TGG | 0.443241 | 5:-17282555 | None:intergenic |
| AAAGCATAAAACAAACCTTT+GGG | 0.444037 | 5:-17282099 | None:intergenic |
| ATGTGATTTGCTCTTGGGGA+AGG | 0.449749 | 5:-17281433 | None:intergenic |
| TTTCCTCTTCTGATTGGTAC+CGG | 0.464126 | 5:+17282147 | MsG0580025349.01.T01:CDS |
| TTCCTGTTCAGCGCGAGCTG+TGG | 0.473482 | 5:+17282175 | MsG0580025349.01.T01:CDS |
| CAGAAATGAAACCTGAAAGA+TGG | 0.473873 | 5:+17281950 | MsG0580025349.01.T01:CDS |
| GAGGAGTGTGGTTGAGATGG+TGG | 0.475640 | 5:+17282235 | MsG0580025349.01.T01:CDS |
| GCGGTTCCGGCGGTAGGTGG+TGG | 0.477031 | 5:+17281781 | MsG0580025349.01.T01:CDS |
| TTAGCTGGGTGCAGAAATTG+AGG | 0.477572 | 5:+17281317 | MsG0580025349.01.T01:CDS |
| TGCTTTGATCCTGGTTGTTG+TGG | 0.480119 | 5:+17282116 | MsG0580025349.01.T01:CDS |
| GGTTGGATGAAATGGCTTAG+TGG | 0.487410 | 5:+17281706 | MsG0580025349.01.T01:CDS |
| CCTCATGTGATTTGCTCTTG+GGG | 0.493232 | 5:-17281437 | None:intergenic |
| ACCTAGAGTATTTGCAACAT+GGG | 0.501565 | 5:+17281807 | MsG0580025349.01.T01:CDS |
| AGGTTCTAGTGCAATGGCAA+TGG | 0.503613 | 5:+17281363 | MsG0580025349.01.T01:CDS |
| CTTACTTATTTGAACTATAG+GGG | 0.504401 | 5:+17281844 | MsG0580025349.01.T01:CDS |
| CAACGCACCTCGGCCATACA+AGG | 0.507655 | 5:+17282542 | MsG0580025349.01.T01:CDS |
| ACCACACATATCAAAATTGT+AGG | 0.508853 | 5:-17282606 | None:intergenic |
| AGATAATCAAGAAATAGAAC+AGG | 0.509628 | 5:-17281751 | None:intergenic |
| CCTGGTACCTTGTATGGCCG+AGG | 0.514730 | 5:-17282549 | None:intergenic |
| TACGGTCACGTACTCGCTCC+CGG | 0.516080 | 5:-17281401 | None:intergenic |
| TGTTCCGTGACGAGACCTCT+TGG | 0.516304 | 5:-17282370 | None:intergenic |
| ACAGTATCCTCAACACCAAA+AGG | 0.518485 | 5:-17281514 | None:intergenic |
| CAGCGCGAGCTGTGGACTGA+CGG | 0.522144 | 5:+17282183 | MsG0580025349.01.T01:CDS |
| GCTTCTAGGAATGGCTGAGA+GGG | 0.523910 | 5:+17282326 | MsG0580025349.01.T01:CDS |
| AAGTCAGCGGTTCCGGCGGT+AGG | 0.529529 | 5:+17281775 | MsG0580025349.01.T01:CDS |
| AGGTACCAGGCGGAACGACT+GGG | 0.531525 | 5:+17282562 | MsG0580025349.01.T01:CDS |
| GCTTTGATTACTGCTGAAAT+GGG | 0.532215 | 5:+17281607 | MsG0580025349.01.T01:CDS |
| TGCAGCTGCAATGTCAAACA+TGG | 0.533216 | 5:+17282266 | MsG0580025349.01.T01:CDS |
| AAAACCCCATGAAAACAAAT+GGG | 0.535277 | 5:-17281918 | None:intergenic |
| TTGACAAAATCAGGTAGCTC+GGG | 0.536795 | 5:-17282750 | None:intergenic |
| AGCGTCGTTGCTATGGCGAT+TGG | 0.537243 | 5:+17282663 | MsG0580025349.01.T01:CDS |
| TGGGGAAGGCATTTCACCTA+CGG | 0.540451 | 5:-17281419 | None:intergenic |
| TCAGCGGTTCCGGCGGTAGG+TGG | 0.541125 | 5:+17281778 | MsG0580025349.01.T01:CDS |
| CTCTTATCAGCTTCTAGGAA+TGG | 0.541247 | 5:+17282317 | MsG0580025349.01.T01:CDS |
| AGCGCGAGCTGTGGACTGAC+GGG | 0.541964 | 5:+17282184 | MsG0580025349.01.T01:CDS |
| ATTGACAAAATCAGGTAGCT+CGG | 0.544293 | 5:-17282751 | None:intergenic |
| CCTCGGCCATACAAGGTACC+AGG | 0.545909 | 5:+17282549 | MsG0580025349.01.T01:CDS |
| GCTTATAAGAAATACTTTGA+GGG | 0.545998 | 5:-17282643 | None:intergenic |
| GAAATTGCTATGATCATTGG+AGG | 0.553545 | 5:+17282216 | MsG0580025349.01.T01:CDS |
| TTGGAGGAGTGTGGTTGAGA+TGG | 0.554137 | 5:+17282232 | MsG0580025349.01.T01:CDS |
| ATTGCCCCAGTCGTTCCGCC+TGG | 0.557837 | 5:-17282567 | None:intergenic |
| TACCTAGAGTATTTGCAACA+TGG | 0.559602 | 5:+17281806 | MsG0580025349.01.T01:CDS |
| ACACATATCAAAATTGTAGG+AGG | 0.563188 | 5:-17282603 | None:intergenic |
| CCCCATGTTGCAAATACTCT+AGG | 0.566170 | 5:-17281808 | None:intergenic |
| ACTATGTTCCCTGAAAATAG+TGG | 0.572325 | 5:+17281631 | MsG0580025349.01.T01:CDS |
| GAGGATACTGTGAAAGCAGC+TGG | 0.575805 | 5:+17281526 | MsG0580025349.01.T01:CDS |
| TTCTCCATAAATTTGAGACA+AGG | 0.576827 | 5:-17282699 | None:intergenic |
| TTCTAGTGCAATGGCAATGG+GGG | 0.581175 | 5:+17281366 | MsG0580025349.01.T01:CDS |
| ACAACAAGGTTCTAGTGCAA+TGG | 0.605934 | 5:+17281357 | MsG0580025349.01.T01:CDS |
| TCTTAAGTCAGCGGTTCCGG+CGG | 0.606842 | 5:+17281771 | MsG0580025349.01.T01:CDS |
| TCTTGATTATCTTAAGTCAG+CGG | 0.608921 | 5:+17281762 | MsG0580025349.01.T01:CDS |
| TATAAGAAATACTTTGAGGG+AGG | 0.614116 | 5:-17282640 | None:intergenic |
| CCTAGAGTATTTGCAACATG+GGG | 0.617913 | 5:+17281808 | MsG0580025349.01.T01:CDS |
| AGAAGTATGCCACAACAACC+AGG | 0.618863 | 5:-17282125 | None:intergenic |
| TCAAACACCCCAACGCACCT+CGG | 0.622823 | 5:+17282532 | MsG0580025349.01.T01:CDS |
| CACATATCAAAATTGTAGGA+GGG | 0.624715 | 5:-17282602 | None:intergenic |
| GCGCTGAACAGGAACAGCAC+CGG | 0.629684 | 5:-17282166 | None:intergenic |
| AACAGCAACAAGTCCAACAA+TGG | 0.629856 | 5:-17281872 | None:intergenic |
| TTCACCAAGAGGTCTCGTCA+CGG | 0.632873 | 5:+17282366 | MsG0580025349.01.T01:CDS |
| AGCTTCTAGGAATGGCTGAG+AGG | 0.637348 | 5:+17282325 | MsG0580025349.01.T01:CDS |
| ATCTTCTATGAGGTATCAGG+AGG | 0.637496 | 5:+17281490 | MsG0580025349.01.T01:CDS |
| AATCCAAGTAAAGCTAACAA+AGG | 0.637507 | 5:-17281550 | None:intergenic |
| CCCCAAGAGCAAATCACATG+AGG | 0.644096 | 5:+17281437 | MsG0580025349.01.T01:CDS |
| GGTACCAGGCGGAACGACTG+GGG | 0.648129 | 5:+17282563 | MsG0580025349.01.T01:CDS |
| GCACCGGTACCAATCAGAAG+AGG | 0.649774 | 5:-17282150 | None:intergenic |
| TCAGGAACACTCCATATGAA+CGG | 0.652179 | 5:-17281583 | None:intergenic |
| CTTCTAGGAATGGCTGAGAG+GGG | 0.655088 | 5:+17282327 | MsG0580025349.01.T01:CDS |
| CTATGATCATTGGAGGAGTG+TGG | 0.665613 | 5:+17282223 | MsG0580025349.01.T01:CDS |
| GGTAAACCACCACCTACCGC+CGG | 0.669905 | 5:-17281787 | None:intergenic |
| GCAGCTGCAATGTCAAACAT+GGG | 0.671433 | 5:+17282267 | MsG0580025349.01.T01:CDS |
| GTTCTAGTGCAATGGCAATG+GGG | 0.681571 | 5:+17281365 | MsG0580025349.01.T01:CDS |
| TGTATGGCCGAGGTGCGTTG+GGG | 0.683744 | 5:-17282539 | None:intergenic |
| GGGAGCGAGTACGTGACCGT+AGG | 0.708466 | 5:+17281403 | MsG0580025349.01.T01:CDS |
| ACAGCATATAATAGACAACA+AGG | 0.710785 | 5:+17281343 | MsG0580025349.01.T01:CDS |
| AGATAGTAGAATCACACCAG+AGG | 0.717929 | 5:-17282418 | None:intergenic |
| CGGCCATACAAGGTACCAGG+CGG | 0.740851 | 5:+17282552 | MsG0580025349.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTTACTTATTTGAACTATA+GGG | + | Chr5:17281843-17281862 | MsG0580025349.01.T01:CDS | 20.0% |
| !! | TTCTTACTTATTTGAACTAT+AGG | + | Chr5:17281842-17281861 | MsG0580025349.01.T01:CDS | 20.0% |
| ! | AAAATAGTGGTTATGTTGTT+TGG | + | Chr5:17281644-17281663 | MsG0580025349.01.T01:CDS | 25.0% |
| ! | AAAGCATAAAACAAACCTTT+GGG | - | Chr5:17282102-17282121 | None:intergenic | 25.0% |
| ! | AATTTATGGAGAAAAAGAGA+TGG | + | Chr5:17282709-17282728 | MsG0580025349.01.T01:CDS | 25.0% |
| ! | AGATAATCAAGAAATAGAAC+AGG | - | Chr5:17281754-17281773 | None:intergenic | 25.0% |
| ! | CTTACTTATTTGAACTATAG+GGG | + | Chr5:17281844-17281863 | MsG0580025349.01.T01:CDS | 25.0% |
| ! | GCTTATAAGAAATACTTTGA+GGG | - | Chr5:17282646-17282665 | None:intergenic | 25.0% |
| !! | AAATAGTGGTTATGTTGTTT+GGG | + | Chr5:17281645-17281664 | MsG0580025349.01.T01:CDS | 25.0% |
| !! | TATATTTGAATACGCTGTTT+TGG | + | Chr5:17282010-17282029 | MsG0580025349.01.T01:CDS | 25.0% |
| !!! | ATGAAGTAAACTTTTTTAGC+TGG | + | Chr5:17281302-17281321 | MsG0580025349.01.T01:CDS | 25.0% |
| !!! | GTTTTGGAATCTCAATTATT+GGG | + | Chr5:17282026-17282045 | MsG0580025349.01.T01:CDS | 25.0% |
| !!! | TGAAGTAAACTTTTTTAGCT+GGG | + | Chr5:17281303-17281322 | MsG0580025349.01.T01:CDS | 25.0% |
| !!! | TGTTTTGGAATCTCAATTAT+TGG | + | Chr5:17282025-17282044 | MsG0580025349.01.T01:CDS | 25.0% |
| AAAAACCCCATGAAAACAAA+TGG | - | Chr5:17281922-17281941 | None:intergenic | 30.0% | |
| AAAACCCCATGAAAACAAAT+GGG | - | Chr5:17281921-17281940 | None:intergenic | 30.0% | |
| AATCCAAGTAAAGCTAACAA+AGG | - | Chr5:17281553-17281572 | None:intergenic | 30.0% | |
| AATTCCAATCAACGTCATTT+AGG | - | Chr5:17281990-17282009 | None:intergenic | 30.0% | |
| ACACATATCAAAATTGTAGG+AGG | - | Chr5:17282606-17282625 | None:intergenic | 30.0% | |
| ACAGCATATAATAGACAACA+AGG | + | Chr5:17281343-17281362 | MsG0580025349.01.T01:CDS | 30.0% | |
| ACCACACATATCAAAATTGT+AGG | - | Chr5:17282609-17282628 | None:intergenic | 30.0% | |
| AGAAGATGAGAAAAACAAGT+GGG | - | Chr5:17281477-17281496 | None:intergenic | 30.0% | |
| CAAAGCATAAAACAAACCTT+TGG | - | Chr5:17282103-17282122 | None:intergenic | 30.0% | |
| CACATATCAAAATTGTAGGA+GGG | - | Chr5:17282605-17282624 | None:intergenic | 30.0% | |
| CGCTTATAAGAAATACTTTG+AGG | - | Chr5:17282647-17282666 | None:intergenic | 30.0% | |
| GAAAAAAGAATCCCTATAAG+AGG | - | Chr5:17282396-17282415 | None:intergenic | 30.0% | |
| GAGAATTTCTTGTACTGTAT+TGG | + | Chr5:17282471-17282490 | MsG0580025349.01.T01:CDS | 30.0% | |
| TAGAAGATGAGAAAAACAAG+TGG | - | Chr5:17281478-17281497 | None:intergenic | 30.0% | |
| TCTTGATTATCTTAAGTCAG+CGG | + | Chr5:17281762-17281781 | MsG0580025349.01.T01:CDS | 30.0% | |
| ! | ACAACATAACCACTATTTTC+AGG | - | Chr5:17281643-17281662 | None:intergenic | 30.0% |
| ! | CAACATAACCACTATTTTCA+GGG | - | Chr5:17281642-17281661 | None:intergenic | 30.0% |
| ! | TATAAGAAATACTTTGAGGG+AGG | - | Chr5:17282643-17282662 | None:intergenic | 30.0% |
| ! | TCTGAAATTGCTATGATCAT+TGG | + | Chr5:17282213-17282232 | MsG0580025349.01.T01:CDS | 30.0% |
| ! | TGTTTTTCTCATCTTCTATG+AGG | + | Chr5:17281480-17281499 | MsG0580025349.01.T01:CDS | 30.0% |
| ! | TTCTCCATAAATTTGAGACA+AGG | - | Chr5:17282702-17282721 | None:intergenic | 30.0% |
| !! | TCCTACAATTTTGATATGTG+TGG | + | Chr5:17282605-17282624 | MsG0580025349.01.T01:CDS | 30.0% |
| !!! | GTTAGCTTTACTTGGATTTT+TGG | + | Chr5:17281555-17281574 | MsG0580025349.01.T01:CDS | 30.0% |
| !!! | TTTGTTTTATGCTTTGATCC+TGG | + | Chr5:17282107-17282126 | MsG0580025349.01.T01:CDS | 30.0% |
| !!! | TTTTGGTTTTTCCGTTCATA+TGG | + | Chr5:17281572-17281591 | MsG0580025349.01.T01:CDS | 30.0% |
| ACTATGTTCCCTGAAAATAG+TGG | + | Chr5:17281631-17281650 | MsG0580025349.01.T01:CDS | 35.0% | |
| ATAAGAGTCGCTACTCATTT+CGG | - | Chr5:17282304-17282323 | None:intergenic | 35.0% | |
| ATTGACAAAATCAGGTAGCT+CGG | - | Chr5:17282754-17282773 | None:intergenic | 35.0% | |
| CAAACCTAAATGACGTTGAT+TGG | + | Chr5:17281983-17282002 | MsG0580025349.01.T01:CDS | 35.0% | |
| CAGAAATGAAACCTGAAAGA+TGG | + | Chr5:17281950-17281969 | MsG0580025349.01.T01:CDS | 35.0% | |
| CCAAAGAAAAATCTTCCCAA+AGG | + | Chr5:17282084-17282103 | MsG0580025349.01.T01:CDS | 35.0% | |
| GAAATTGCTATGATCATTGG+AGG | + | Chr5:17282216-17282235 | MsG0580025349.01.T01:CDS | 35.0% | |
| GCTTTGATTACTGCTGAAAT+GGG | + | Chr5:17281607-17281626 | MsG0580025349.01.T01:CDS | 35.0% | |
| GTACTGTATTGGAATGATTC+TGG | + | Chr5:17282482-17282501 | MsG0580025349.01.T01:CDS | 35.0% | |
| TACTTCTTTCCTCTTCTGAT+TGG | + | Chr5:17282141-17282160 | MsG0580025349.01.T01:CDS | 35.0% | |
| TATAGGGGTTTAACCATTGT+TGG | + | Chr5:17281859-17281878 | MsG0580025349.01.T01:CDS | 35.0% | |
| ! | ACCTAGAGTATTTGCAACAT+GGG | + | Chr5:17281807-17281826 | MsG0580025349.01.T01:CDS | 35.0% |
| ! | AGCTTTGATTACTGCTGAAA+TGG | + | Chr5:17281606-17281625 | MsG0580025349.01.T01:CDS | 35.0% |
| ! | TACCTAGAGTATTTGCAACA+TGG | + | Chr5:17281806-17281825 | MsG0580025349.01.T01:CDS | 35.0% |
| !! | CATCTTTCAGGTTTCATTTC+TGG | - | Chr5:17281952-17281971 | None:intergenic | 35.0% |
| !! | CCTTTGGGAAGATTTTTCTT+TGG | - | Chr5:17282087-17282106 | None:intergenic | 35.0% |
| !! | CTTCTCCCATTTGTTTTCAT+GGG | + | Chr5:17281913-17281932 | MsG0580025349.01.T01:CDS | 35.0% |
| !! | GACTTGTTGCTGTTTGTTTA+GGG | + | Chr5:17281881-17281900 | MsG0580025349.01.T01:CDS | 35.0% |
| !! | TTCTCCCATTTGTTTTCATG+GGG | + | Chr5:17281914-17281933 | MsG0580025349.01.T01:CDS | 35.0% |
| AACAGCAACAAGTCCAACAA+TGG | - | Chr5:17281875-17281894 | None:intergenic | 40.0% | |
| ACAGTATCCTCAACACCAAA+AGG | - | Chr5:17281517-17281536 | None:intergenic | 40.0% | |
| AGATAGTAGAATCACACCAG+AGG | - | Chr5:17282421-17282440 | None:intergenic | 40.0% | |
| CTGGTGTGATTCTACTATCT+TGG | + | Chr5:17282421-17282440 | MsG0580025349.01.T01:CDS | 40.0% | |
| GTCTCAACAAACCATCTTTC+AGG | - | Chr5:17281964-17281983 | None:intergenic | 40.0% | |
| TCAGCAGTAATCAAAGCTTC+AGG | - | Chr5:17281604-17281623 | None:intergenic | 40.0% | |
| TCAGGAACACTCCATATGAA+CGG | - | Chr5:17281586-17281605 | None:intergenic | 40.0% | |
| TCCTCTCCATTGACAAAATC+AGG | - | Chr5:17282762-17282781 | None:intergenic | 40.0% | |
| TTATCTTAAGTCAGCGGTTC+CGG | + | Chr5:17281768-17281787 | MsG0580025349.01.T01:CDS | 40.0% | |
| TTGACAAAATCAGGTAGCTC+GGG | - | Chr5:17282753-17282772 | None:intergenic | 40.0% | |
| TTTCCTCTTCTGATTGGTAC+CGG | + | Chr5:17282147-17282166 | MsG0580025349.01.T01:CDS | 40.0% | |
| ! | ACAACAAGGTTCTAGTGCAA+TGG | + | Chr5:17281357-17281376 | MsG0580025349.01.T01:CDS | 40.0% |
| ! | ACCTGATTTTGTCAATGGAG+AGG | + | Chr5:17282758-17282777 | MsG0580025349.01.T01:CDS | 40.0% |
| ! | ATCTTCTATGAGGTATCAGG+AGG | + | Chr5:17281490-17281509 | MsG0580025349.01.T01:CDS | 40.0% |
| ! | CCTAGAGTATTTGCAACATG+GGG | + | Chr5:17281808-17281827 | MsG0580025349.01.T01:CDS | 40.0% |
| ! | CTCATCTTCTATGAGGTATC+AGG | + | Chr5:17281487-17281506 | MsG0580025349.01.T01:CDS | 40.0% |
| ! | CTCTTATCAGCTTCTAGGAA+TGG | + | Chr5:17282317-17282336 | MsG0580025349.01.T01:CDS | 40.0% |
| ! | GAGCTACCTGATTTTGTCAA+TGG | + | Chr5:17282753-17282772 | MsG0580025349.01.T01:CDS | 40.0% |
| ! | GCAGCCTTGTCTCAAATTTA+TGG | + | Chr5:17282695-17282714 | MsG0580025349.01.T01:CDS | 40.0% |
| ! | TCTTATAAGCGTCGTTGCTA+TGG | + | Chr5:17282656-17282675 | MsG0580025349.01.T01:CDS | 40.0% |
| !! | GCTTCTCCCATTTGTTTTCA+TGG | + | Chr5:17281912-17281931 | MsG0580025349.01.T01:CDS | 40.0% |
| !! | GGACTTGTTGCTGTTTGTTT+AGG | + | Chr5:17281880-17281899 | MsG0580025349.01.T01:CDS | 40.0% |
| !! | GGTCCTTTGTTAGCTTTACT+TGG | + | Chr5:17281547-17281566 | MsG0580025349.01.T01:CDS | 40.0% |
| !! | TCCTCATGTGATTTGCTCTT+GGG | - | Chr5:17281441-17281460 | None:intergenic | 40.0% |
| !! | TTCACCAGCAAGAGTACTTA+TGG | - | Chr5:17282055-17282074 | None:intergenic | 40.0% |
| !! | TTCCTCATGTGATTTGCTCT+TGG | - | Chr5:17281442-17281461 | None:intergenic | 40.0% |
| !!! | GTCTGCTTTAGGACCTTTTT+GGG | + | Chr5:17281672-17281691 | MsG0580025349.01.T01:CDS | 40.0% |
| !!! | TCTGCTTTAGGACCTTTTTG+GGG | + | Chr5:17281673-17281692 | MsG0580025349.01.T01:CDS | 40.0% |
| AGCGACTCTTATCAGCTTCT+AGG | + | Chr5:17282312-17282331 | MsG0580025349.01.T01:CDS | 45.0% | |
| CCCCATGTTGCAAATACTCT+AGG | - | Chr5:17281811-17281830 | None:intergenic | 45.0% | |
| CTATGATCATTGGAGGAGTG+TGG | + | Chr5:17282223-17282242 | MsG0580025349.01.T01:CDS | 45.0% | |
| GACCTCTTGGTGAAAAACTC+TGG | - | Chr5:17282360-17282379 | None:intergenic | 45.0% | |
| GACTCCATAAGTACTCTTGC+TGG | + | Chr5:17282048-17282067 | MsG0580025349.01.T01:CDS | 45.0% | |
| GCAGCTGCAATGTCAAACAT+GGG | + | Chr5:17282267-17282286 | MsG0580025349.01.T01:CDS | 45.0% | |
| GGTTGGATGAAATGGCTTAG+TGG | + | Chr5:17281706-17281725 | MsG0580025349.01.T01:CDS | 45.0% | |
| GTCACGGAACACCTCTTATA+GGG | + | Chr5:17282382-17282401 | MsG0580025349.01.T01:CDS | 45.0% | |
| GTTCTAGTGCAATGGCAATG+GGG | + | Chr5:17281365-17281384 | MsG0580025349.01.T01:CDS | 45.0% | |
| TGCAGCTGCAATGTCAAACA+TGG | + | Chr5:17282266-17282285 | MsG0580025349.01.T01:CDS | 45.0% | |
| TGCTTTGATCCTGGTTGTTG+TGG | + | Chr5:17282116-17282135 | MsG0580025349.01.T01:CDS | 45.0% | |
| TGGAGAGGACACTCAATCTT+TGG | + | Chr5:17282773-17282792 | MsG0580025349.01.T01:CDS | 45.0% | |
| TTAGCTGGGTGCAGAAATTG+AGG | + | Chr5:17281317-17281336 | MsG0580025349.01.T01:CDS | 45.0% | |
| TTCAGCAGGGTTGGATGAAA+TGG | + | Chr5:17281698-17281717 | MsG0580025349.01.T01:CDS | 45.0% | |
| TTCTAGTGCAATGGCAATGG+GGG | + | Chr5:17281366-17281385 | MsG0580025349.01.T01:CDS | 45.0% | |
| ! | AGAAGTATGCCACAACAACC+AGG | - | Chr5:17282128-17282147 | None:intergenic | 45.0% |
| ! | AGGTTCTAGTGCAATGGCAA+TGG | + | Chr5:17281363-17281382 | MsG0580025349.01.T01:CDS | 45.0% |
| ! | GGTTCTAGTGCAATGGCAAT+GGG | + | Chr5:17281364-17281383 | MsG0580025349.01.T01:CDS | 45.0% |
| ! | GTTTGGGTTTCGTCTGCTTT+AGG | + | Chr5:17281661-17281680 | MsG0580025349.01.T01:CDS | 45.0% |
| ! | TGCCAGAGTTTTTCACCAAG+AGG | + | Chr5:17282355-17282374 | MsG0580025349.01.T01:CDS | 45.0% |
| !! | ATGTGATTTGCTCTTGGGGA+AGG | - | Chr5:17281436-17281455 | None:intergenic | 45.0% |
| !! | CCTCATGTGATTTGCTCTTG+GGG | - | Chr5:17281440-17281459 | None:intergenic | 45.0% |
| !!! | CGTCTGCTTTAGGACCTTTT+TGG | + | Chr5:17281671-17281690 | MsG0580025349.01.T01:CDS | 45.0% |
| !!! | CTGCTTTAGGACCTTTTTGG+GGG | + | Chr5:17281674-17281693 | MsG0580025349.01.T01:CDS | 45.0% |
| !!! | GGGATTCTTTTTTCAGCCTC+TGG | + | Chr5:17282402-17282421 | MsG0580025349.01.T01:CDS | 45.0% |
| CCCCAAGAGCAAATCACATG+AGG | + | Chr5:17281437-17281456 | MsG0580025349.01.T01:CDS | 50.0% | |
| CGTCACGGAACACCTCTTAT+AGG | + | Chr5:17282381-17282400 | MsG0580025349.01.T01:CDS | 50.0% | |
| GAGGATACTGTGAAAGCAGC+TGG | + | Chr5:17281526-17281545 | MsG0580025349.01.T01:CDS | 50.0% | |
| TTCACCAAGAGGTCTCGTCA+CGG | + | Chr5:17282366-17282385 | MsG0580025349.01.T01:CDS | 50.0% | |
| ! | AGCTTCTAGGAATGGCTGAG+AGG | + | Chr5:17282325-17282344 | MsG0580025349.01.T01:CDS | 50.0% |
| ! | CTTCTAGGAATGGCTGAGAG+GGG | + | Chr5:17282327-17282346 | MsG0580025349.01.T01:CDS | 50.0% |
| ! | GCTTCTAGGAATGGCTGAGA+GGG | + | Chr5:17282326-17282345 | MsG0580025349.01.T01:CDS | 50.0% |
| ! | TTGGAGGAGTGTGGTTGAGA+TGG | + | Chr5:17282232-17282251 | MsG0580025349.01.T01:CDS | 50.0% |
| !! | ACCTTTTTGGGGGTTTCAGC+AGG | + | Chr5:17281684-17281703 | MsG0580025349.01.T01:CDS | 50.0% |
| !! | CCTTTTTGGGGGTTTCAGCA+GGG | + | Chr5:17281685-17281704 | MsG0580025349.01.T01:CDS | 50.0% |
| !! | GAGGTATCAGGAGGACCTTT+TGG | + | Chr5:17281499-17281518 | MsG0580025349.01.T01:CDS | 50.0% |
| !! | TGGGGAAGGCATTTCACCTA+CGG | - | Chr5:17281422-17281441 | None:intergenic | 50.0% |
| !!! | AGGAGGACCTTTTGGTGTTG+AGG | + | Chr5:17281507-17281526 | MsG0580025349.01.T01:CDS | 50.0% |
| AGCGTCGTTGCTATGGCGAT+TGG | + | Chr5:17282663-17282682 | MsG0580025349.01.T01:CDS | 55.0% | |
| ATGGCAATGGGGGAGTTCAC+CGG | + | Chr5:17281376-17281395 | MsG0580025349.01.T01:CDS | 55.0% | |
| CCCTGCTGAAACCCCCAAAA+AGG | - | Chr5:17281688-17281707 | None:intergenic | 55.0% | |
| GTTCCGCCTGGTACCTTGTA+TGG | - | Chr5:17282558-17282577 | None:intergenic | 55.0% | |
| TCAAACACCCCAACGCACCT+CGG | + | Chr5:17282532-17282551 | MsG0580025349.01.T01:CDS | 55.0% | |
| TCTTAAGTCAGCGGTTCCGG+CGG | + | Chr5:17281771-17281790 | MsG0580025349.01.T01:CDS | 55.0% | |
| TGTTCCGTGACGAGACCTCT+TGG | - | Chr5:17282373-17282392 | None:intergenic | 55.0% | |
| TTGTATGGCCGAGGTGCGTT+GGG | - | Chr5:17282543-17282562 | None:intergenic | 55.0% | |
| TTTGGGGGTTTCAGCAGGGT+TGG | + | Chr5:17281689-17281708 | MsG0580025349.01.T01:CDS | 55.0% | |
| ! | GAGGAGTGTGGTTGAGATGG+TGG | + | Chr5:17282235-17282254 | MsG0580025349.01.T01:CDS | 55.0% |
| ! | GCACCGGTACCAATCAGAAG+AGG | - | Chr5:17282153-17282172 | None:intergenic | 55.0% |
| AGGTACCAGGCGGAACGACT+GGG | + | Chr5:17282562-17282581 | MsG0580025349.01.T01:CDS | 60.0% | |
| CAACGCACCTCGGCCATACA+AGG | + | Chr5:17282542-17282561 | MsG0580025349.01.T01:CDS | 60.0% | |
| CCTGGTACCTTGTATGGCCG+AGG | - | Chr5:17282552-17282571 | None:intergenic | 60.0% | |
| CTTGTATGGCCGAGGTGCGT+TGG | - | Chr5:17282544-17282563 | None:intergenic | 60.0% | |
| GCGCTGAACAGGAACAGCAC+CGG | - | Chr5:17282169-17282188 | None:intergenic | 60.0% | |
| GGTAAACCACCACCTACCGC+CGG | - | Chr5:17281790-17281809 | None:intergenic | 60.0% | |
| TACGGTCACGTACTCGCTCC+CGG | - | Chr5:17281404-17281423 | None:intergenic | 60.0% | |
| TGGCAATGGGGGAGTTCACC+GGG | + | Chr5:17281377-17281396 | MsG0580025349.01.T01:CDS | 60.0% | |
| TGTATGGCCGAGGTGCGTTG+GGG | - | Chr5:17282542-17282561 | None:intergenic | 60.0% | |
| TTCCTGTTCAGCGCGAGCTG+TGG | + | Chr5:17282175-17282194 | MsG0580025349.01.T01:CDS | 60.0% | |
| ! | AAGGTACCAGGCGGAACGAC+TGG | + | Chr5:17282561-17282580 | MsG0580025349.01.T01:CDS | 60.0% |
| ! | CCTCGGCCATACAAGGTACC+AGG | + | Chr5:17282549-17282568 | MsG0580025349.01.T01:CDS | 60.0% |
| ! | CGGCCATACAAGGTACCAGG+CGG | + | Chr5:17282552-17282571 | MsG0580025349.01.T01:CDS | 60.0% |
| AAGTCAGCGGTTCCGGCGGT+AGG | + | Chr5:17281775-17281794 | MsG0580025349.01.T01:CDS | 65.0% | |
| ATGGGGGAGTTCACCGGGAC+CGG | + | Chr5:17281382-17281401 | MsG0580025349.01.T01:CDS | 65.0% | |
| ATTGCCCCAGTCGTTCCGCC+TGG | - | Chr5:17282570-17282589 | None:intergenic | 65.0% | |
| GGGAGCGAGTACGTGACCGT+AGG | + | Chr5:17281403-17281422 | MsG0580025349.01.T01:CDS | 65.0% | |
| GGTACCAGGCGGAACGACTG+GGG | + | Chr5:17282563-17282582 | MsG0580025349.01.T01:CDS | 65.0% | |
| GTCCACAGCTCGCGCTGAAC+AGG | - | Chr5:17282180-17282199 | None:intergenic | 65.0% | |
| ! | AGCGCGAGCTGTGGACTGAC+GGG | + | Chr5:17282184-17282203 | MsG0580025349.01.T01:CDS | 65.0% |
| ! | CAGCGCGAGCTGTGGACTGA+CGG | + | Chr5:17282183-17282202 | MsG0580025349.01.T01:CDS | 65.0% |
| CACGTACTCGCTCCCGGTCC+CGG | - | Chr5:17281398-17281417 | None:intergenic | 70.0% | |
| TCAGCGGTTCCGGCGGTAGG+TGG | + | Chr5:17281778-17281797 | MsG0580025349.01.T01:CDS | 70.0% | |
| TGGGGGAGTTCACCGGGACC+GGG | + | Chr5:17281383-17281402 | MsG0580025349.01.T01:CDS | 70.0% | |
| GCGGTTCCGGCGGTAGGTGG+TGG | + | Chr5:17281781-17281800 | MsG0580025349.01.T01:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 17281289 | 17282803 | 17281289 | ID=MsG0580025349.01;Name=MsG0580025349.01 |
| Chr5 | mRNA | 17281289 | 17282803 | 17281289 | ID=MsG0580025349.01.T01;Parent=MsG0580025349.01;Name=MsG0580025349.01.T01;_AED=0.48;_eAED=0.48;_QI=0|-1|0|1|-1|1|1|0|504 |
| Chr5 | exon | 17281289 | 17282803 | 17281289 | ID=MsG0580025349.01.T01:exon:22832;Parent=MsG0580025349.01.T01 |
| Chr5 | CDS | 17281289 | 17282803 | 17281289 | ID=MsG0580025349.01.T01:cds;Parent=MsG0580025349.01.T01 |
| Gene Sequence |
| Protein sequence |
