AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280007484.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007484.01.T01 MTR_2g026130 99.130 460 4 0 1 460 1 460 0.0 920
MsG0280007484.01.T01 MTR_1g018180 52.878 278 131 0 175 452 61 338 1.24e-91 282
MsG0280007484.01.T01 MTR_3g103050 48.693 306 141 3 156 457 44 337 5.37e-90 277
MsG0280007484.01.T01 MTR_1g069845 51.943 283 135 1 175 457 323 604 3.65e-83 268
MsG0280007484.01.T01 MTR_1g069845 52.330 279 132 1 179 457 448 725 8.01e-82 267
MsG0280007484.01.T01 MTR_1g069845 52.330 279 132 1 179 457 444 721 8.22e-82 267
MsG0280007484.01.T01 MTR_3g466220 50.530 283 139 1 171 453 528 809 3.01e-76 254
MsG0280007484.01.T01 MTR_3g466220 50.530 283 139 1 171 453 549 830 3.44e-76 254
MsG0280007484.01.T01 MTR_7g097020 50.000 278 138 1 179 456 486 762 1.32e-75 252
MsG0280007484.01.T01 MTR_4g485520 44.444 279 155 0 175 453 205 483 4.67e-69 228
MsG0280007484.01.T01 MTR_1g094215 47.518 282 148 0 175 456 162 443 7.91e-69 226
MsG0280007484.01.T01 MTR_4g485520 44.444 279 155 0 175 453 373 651 8.51e-68 228
MsG0280007484.01.T01 MTR_4g063800 47.547 265 139 0 190 454 368 632 1.56e-67 228
MsG0280007484.01.T01 MTR_1g094215 47.518 282 148 0 175 456 345 626 2.34e-67 227
MsG0280007484.01.T01 MTR_7g059405 44.944 267 145 1 182 448 368 632 8.50e-61 209
MsG0280007484.01.T01 MTR_7g078330 39.721 287 173 0 167 453 359 645 1.27e-57 201
MsG0280007484.01.T01 MTR_5g083030 40.532 301 173 5 154 448 383 683 4.26e-52 187
MsG0280007484.01.T01 MTR_2g013940 75.238 105 17 2 1 105 1 96 2.77e-42 145
MsG0280007484.01.T01 MTR_2g018010 35.762 302 182 8 156 449 377 674 2.97e-35 139
MsG0280007484.01.T01 MTR_5g069340 35.959 292 182 4 174 460 33 324 2.05e-34 132
MsG0280007484.01.T01 MTR_8g080280 34.783 276 169 6 190 456 443 716 9.98e-30 123
MsG0280007484.01.T01 MTR_3g078340 32.472 271 178 2 182 449 218 486 2.69e-27 114
MsG0280007484.01.T01 MTR_7g116600 34.783 276 170 6 184 451 180 453 3.05e-27 114
MsG0280007484.01.T01 MTR_6g004790 33.793 290 179 7 179 459 6 291 4.74e-26 108
MsG0280007484.01.T01 MTR_3g078160 31.618 272 169 8 190 450 393 658 3.10e-25 109
MsG0280007484.01.T01 MTR_3g078160 31.618 272 169 8 190 450 393 658 3.78e-25 109
MsG0280007484.01.T01 MTR_4g107010 31.636 275 181 6 190 457 398 672 4.11e-25 109
MsG0280007484.01.T01 MTR_3g085610 33.086 269 164 8 196 453 448 711 1.45e-24 107
MsG0280007484.01.T01 MTR_7g053260 30.142 282 184 8 177 449 173 450 2.20e-23 102
MsG0280007484.01.T01 MTR_4g091880 34.010 197 123 5 256 449 147 339 8.04e-23 99.8
MsG0280007484.01.T01 MTR_4g091880 34.010 197 123 5 256 449 175 367 1.62e-22 99.4
MsG0280007484.01.T01 MTR_5g079550 30.800 250 134 5 207 455 92 303 1.15e-21 96.7
MsG0280007484.01.T01 MTR_2g011140 31.698 265 165 5 196 453 128 383 1.21e-20 94.0
MsG0280007484.01.T01 MTR_1g079450 33.333 273 161 8 190 448 171 436 1.21e-19 91.3
MsG0280007484.01.T01 MTR_6g008170 29.469 207 144 1 179 385 242 446 1.50e-19 91.7
MsG0280007484.01.T01 MTR_3g067685 32.389 247 126 5 207 451 113 320 6.27e-19 89.0
MsG0280007484.01.T01 MTR_3g106140 28.859 298 198 7 164 449 99 394 2.11e-18 87.8
MsG0280007484.01.T01 MTR_1g014420 29.412 272 178 7 190 449 144 413 2.22e-18 88.2
MsG0280007484.01.T01 MTR_4g028960 31.900 279 145 10 196 449 406 664 1.80e-16 82.4
MsG0280007484.01.T01 MTR_5g034440 30.877 285 189 6 182 458 390 674 9.25e-15 77.0
MsG0280007484.01.T01 MTR_1g094025 34.167 120 56 1 249 368 186 282 1.90e-14 74.3
MsG0280007484.01.T01 MTR_3g078160 34.932 146 91 3 190 333 393 536 1.70e-13 72.8
MsG0280007484.01.T01 MTR_8g039560 27.740 292 193 8 174 448 7 297 3.77e-13 70.9
MsG0280007484.01.T01 MTR_5g005940 27.698 278 181 10 189 451 118 390 1.62e-12 70.1
MsG0280007484.01.T01 MTR_5g005940 28.436 211 145 3 173 381 197 403 5.45e-11 65.5
MsG0280007484.01.T01 MTR_5g005940 27.698 278 181 10 189 451 118 390 1.91e-12 69.7
MsG0280007484.01.T01 MTR_5g005940 28.169 213 147 3 171 381 195 403 7.25e-11 64.7
MsG0280007484.01.T01 MTR_5g020570 28.889 180 115 6 283 452 552 728 1.96e-12 70.1
MsG0280007484.01.T01 MTR_8g032570 27.778 252 170 8 210 455 257 502 2.09e-12 69.7
MsG0280007484.01.T01 MTR_5g020570 28.889 180 115 6 283 452 537 713 2.14e-12 69.7
MsG0280007484.01.T01 MTR_8g032570 27.530 247 168 7 215 455 238 479 2.85e-12 69.3
MsG0280007484.01.T01 MTR_8g077205 27.778 180 121 3 282 454 424 601 5.77e-12 68.2
MsG0280007484.01.T01 MTR_8g077205 27.778 180 121 3 282 454 536 713 7.38e-12 68.2
MsG0280007484.01.T01 MTR_1g104870 26.756 299 199 10 173 456 105 398 8.83e-12 67.8
MsG0280007484.01.T01 MTR_1g104870 27.778 216 150 3 173 386 200 411 2.05e-11 66.6
MsG0280007484.01.T01 MTR_7g094900 26.697 221 154 4 179 396 208 423 1.33e-11 67.4
MsG0280007484.01.T01 MTR_7g094910 26.697 221 154 4 179 396 189 404 1.70e-11 66.6
MsG0280007484.01.T01 MTR_7g094910 26.697 221 154 4 179 396 189 404 1.76e-11 67.0
MsG0280007484.01.T01 MTR_1g093965 40.506 79 42 1 302 375 115 193 3.74e-11 62.8
MsG0280007484.01.T01 MTR_1g093995 40.506 79 42 1 302 375 115 193 3.96e-11 62.8
MsG0280007484.01.T01 MTR_3g019360 30.818 159 109 1 190 347 265 423 4.86e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007484.01.T01 AT4G16490 71.730 474 116 8 1 459 1 471 0.0 609
MsG0280007484.01.T01 AT3G01400 44.772 373 171 2 81 452 4 342 2.41e-92 284
MsG0280007484.01.T01 AT5G58680 43.432 373 175 5 82 452 3 341 5.66e-86 268
MsG0280007484.01.T01 AT2G23140 49.355 310 148 3 152 453 323 631 4.26e-85 274
MsG0280007484.01.T01 AT2G23140 49.355 310 148 3 152 453 323 631 4.26e-85 274
MsG0280007484.01.T01 AT2G23140 51.761 284 136 1 170 453 538 820 2.95e-83 273
MsG0280007484.01.T01 AT2G23140 51.761 284 136 1 170 453 538 820 2.95e-83 273
MsG0280007484.01.T01 AT2G23140 51.761 284 136 1 170 453 541 823 3.44e-83 273
MsG0280007484.01.T01 AT5G67340 49.828 291 144 2 164 453 412 701 2.22e-77 255
MsG0280007484.01.T01 AT5G67340 49.828 291 144 2 164 453 412 701 2.22e-77 255
MsG0280007484.01.T01 AT3G54790 48.929 280 140 3 174 452 438 715 1.56e-68 232
MsG0280007484.01.T01 AT3G54790 48.929 280 140 3 174 452 474 751 2.59e-68 232
MsG0280007484.01.T01 AT3G54790 48.929 280 140 3 174 452 474 751 2.59e-68 232
MsG0280007484.01.T01 AT3G46510 46.691 272 144 1 190 460 369 640 5.70e-66 224
MsG0280007484.01.T01 AT1G23030 44.286 280 155 1 175 453 333 612 9.08e-66 222
MsG0280007484.01.T01 AT1G71020 44.326 282 155 2 175 454 195 476 1.47e-64 216
MsG0280007484.01.T01 AT3G54850 45.196 281 154 0 179 459 351 631 2.00e-63 216
MsG0280007484.01.T01 AT1G71020 44.803 279 152 2 175 451 343 621 2.39e-63 216
MsG0280007484.01.T01 AT2G28830 43.382 272 151 3 190 458 300 571 6.24e-60 206
MsG0280007484.01.T01 AT5G42340 41.694 307 175 2 150 453 354 659 1.60e-56 198
MsG0280007484.01.T01 AT1G29340 35.759 316 181 9 156 458 389 695 5.76e-33 132
MsG0280007484.01.T01 AT3G07360 33.566 286 178 8 182 458 43 325 1.16e-31 124
MsG0280007484.01.T01 AT3G07360 33.566 286 178 8 182 458 43 325 1.16e-31 124
MsG0280007484.01.T01 AT3G07360 33.566 286 178 8 182 458 43 325 1.16e-31 124
MsG0280007484.01.T01 AT3G07360 33.566 286 178 8 182 458 43 325 1.16e-31 124
MsG0280007484.01.T01 AT3G07360 33.566 286 178 8 182 458 43 325 1.16e-31 124
MsG0280007484.01.T01 AT3G07360 33.566 286 178 8 182 458 43 325 1.16e-31 124
MsG0280007484.01.T01 AT3G07360 33.566 286 178 8 182 458 43 325 1.16e-31 124
MsG0280007484.01.T01 AT3G07360 33.566 286 178 8 182 458 43 325 1.16e-31 124
MsG0280007484.01.T01 AT3G07360 33.566 286 178 8 182 458 43 325 1.16e-31 124
MsG0280007484.01.T01 AT3G07360 34.296 277 170 8 184 451 180 453 6.84e-31 124
MsG0280007484.01.T01 AT1G67530 34.432 273 169 6 196 460 447 717 7.68e-31 126
MsG0280007484.01.T01 AT1G67530 34.432 273 169 6 196 460 447 717 7.68e-31 126
MsG0280007484.01.T01 AT1G67530 34.432 273 169 6 196 460 447 717 7.68e-31 126
MsG0280007484.01.T01 AT4G12710 35.424 271 166 6 193 454 65 335 7.21e-30 120
MsG0280007484.01.T01 AT5G62560 34.109 258 163 3 197 449 258 513 1.03e-27 116
MsG0280007484.01.T01 AT1G24330 32.971 276 172 8 187 453 438 709 1.74e-27 116
MsG0280007484.01.T01 AT1G24330 32.971 276 172 8 187 453 438 709 1.74e-27 116
MsG0280007484.01.T01 AT4G21350 34.701 268 169 4 183 448 104 367 1.89e-25 107
MsG0280007484.01.T01 AT3G03440 32.331 266 171 4 193 451 84 347 1.68e-24 105
MsG0280007484.01.T01 AT5G65200 28.322 286 192 3 176 450 227 510 4.78e-24 105
MsG0280007484.01.T01 AT5G40140 28.179 291 202 5 163 449 219 506 1.24e-22 101
MsG0280007484.01.T01 AT5G14510 34.440 241 144 8 220 450 44 280 1.53e-22 98.6
MsG0280007484.01.T01 AT1G27910 30.519 308 201 6 161 457 406 711 9.33e-22 99.0
MsG0280007484.01.T01 AT3G47820 31.298 262 170 5 196 449 228 487 1.06e-18 89.0
MsG0280007484.01.T01 AT5G01830 31.295 278 172 8 182 449 376 644 1.74e-18 89.0
MsG0280007484.01.T01 AT1G08315 26.962 293 193 8 174 446 8 299 6.35e-18 85.1
MsG0280007484.01.T01 AT4G31890 27.653 311 197 9 163 449 122 428 3.27e-17 84.3
MsG0280007484.01.T01 AT4G31890 27.653 311 197 9 163 449 122 428 3.27e-17 84.3
MsG0280007484.01.T01 AT4G31890 27.653 311 197 9 163 449 122 428 3.27e-17 84.3
MsG0280007484.01.T01 AT2G25130 28.996 269 173 8 195 449 131 395 3.56e-17 84.0
MsG0280007484.01.T01 AT5G18320 29.391 279 182 6 184 449 171 447 6.54e-17 83.2
MsG0280007484.01.T01 AT1G10560 29.391 279 183 9 193 459 408 684 5.21e-16 81.3
MsG0280007484.01.T01 AT1G60190 28.520 277 185 9 193 456 394 670 3.49e-15 78.6
MsG0280007484.01.T01 AT2G27430 28.990 307 193 9 161 452 63 359 6.51e-13 70.9

Find 151 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTGAGCCTTTGGTTGATT+AGG 0.218183 2:+16067570 MsG0280007484.01.T01:three_prime_UTR
AGAGAAGTAATTGCGTATTT+TGG 0.241782 2:+16067189 MsG0280007484.01.T01:exon
GGTACAGATGACCCTAGTTT+TGG 0.260031 2:+16067608 MsG0280007484.01.T01:three_prime_UTR
TTCCAATTTGTTGTGTTTCC+AGG 0.266426 2:+16067404 MsG0280007484.01.T01:three_prime_UTR
AAAAGCTCAATTGGAGCTTC+AGG 0.285745 2:+16066041 MsG0280007484.01.T01:CDS
TACAGTGTGCCAAACATTCT+TGG 0.294440 2:+16067279 MsG0280007484.01.T01:three_prime_UTR
ATGAAATGAAATGAAATTAA+AGG 0.299143 2:-16064946 None:intergenic
TGTGTATATAGCGGCTTTGC+TGG 0.309929 2:+16067252 MsG0280007484.01.T01:three_prime_UTR
TTGATTTATGTATTGAAAAC+AGG 0.316588 2:+16065954 MsG0280007484.01.T01:CDS
CTGTAACGAATTTGAGATTA+GGG 0.318885 2:-16065131 None:intergenic
CATGGTTGTCTTTGAGCCTT+TGG 0.326356 2:+16067561 MsG0280007484.01.T01:three_prime_UTR
AATAGATGAATGATATTGAT+AGG 0.337033 2:-16065229 None:intergenic
TAATGGAAAACGATTTGAAT+TGG 0.343954 2:-16065199 None:intergenic
CGATACACAGGTGGATCTTT+CGG 0.345517 2:-16065340 None:intergenic
CCTAGTACTTCACTGCTATC+TGG 0.346490 2:+16067699 MsG0280007484.01.T01:three_prime_UTR
CTCCTGGAAACACAACAAAT+TGG 0.354614 2:-16067406 None:intergenic
GAAGAGAATAAAAGCTCAAT+TGG 0.364861 2:+16066032 MsG0280007484.01.T01:CDS
TTGGTTTCGCTTCTGTTGAA+TGG 0.365664 2:+16066077 MsG0280007484.01.T01:CDS
AACATCCTTCCAAGAATGTT+TGG 0.368032 2:-16067288 None:intergenic
GTTATCTTCATCGAAGATAC+TGG 0.372226 2:-16065301 None:intergenic
ACTGTAACGAATTTGAGATT+AGG 0.373810 2:-16065132 None:intergenic
CTTTGCTTGTTCCTTTGCTT+CGG 0.375402 2:+16065826 MsG0280007484.01.T01:CDS
AACAGATGAAGCTGAGTAAC+TGG 0.382820 2:-16067813 None:intergenic
GGAGTTACATGGCGTGTGTT+TGG 0.383146 2:+16067425 MsG0280007484.01.T01:three_prime_UTR
AGCTAGTGACACGGTGGATT+CGG 0.390998 2:-16067454 None:intergenic
TCTGTGTCCATAGCTCCTTT+TGG 0.406665 2:+16067728 MsG0280007484.01.T01:three_prime_UTR
AAGACAACCATGCTTGTGTT+TGG 0.417373 2:-16067550 None:intergenic
GGAGTTGGTGGTGGAGGTGA+TGG 0.419952 2:+16065567 MsG0280007484.01.T01:CDS
GGTGAAGCCGTTGGTGGAGC+TGG 0.424429 2:+16066190 MsG0280007484.01.T01:CDS
TTTCACAGACCCATCTTCAA+TGG 0.425894 2:-16066333 None:intergenic
TGTGACGGTGGAGTTGGTGG+TGG 0.426935 2:+16065558 MsG0280007484.01.T01:CDS
CTTGTCGCTCTTTCGCAGAA+TGG 0.428040 2:+16066449 MsG0280007484.01.T01:CDS
TCTAGAGAAACCATTGTTGA+AGG 0.439249 2:-16065165 None:intergenic
CTTGTGGAAGCCATTGAAGA+TGG 0.441589 2:+16066323 MsG0280007484.01.T01:CDS
TTGTGTTTCCAGGAGTTACA+TGG 0.452715 2:+16067414 MsG0280007484.01.T01:three_prime_UTR
GACGGTGGAGTTGGTGGTGG+AGG 0.453240 2:+16065561 MsG0280007484.01.T01:CDS
CCAGATAGCAGTGAAGTACT+AGG 0.455977 2:-16067699 None:intergenic
CTGGTGGCTGAGCAAGGGAA+TGG 0.460644 2:+16066209 MsG0280007484.01.T01:CDS
TGCATGAATATAGCTAGGTT+TGG 0.466969 2:+16067364 MsG0280007484.01.T01:three_prime_UTR
TTCAGGGGCGATTCCACCGT+TGG 0.467013 2:+16066058 MsG0280007484.01.T01:CDS
ACCGCGTGCTCTTGTGTCCA+TGG 0.470277 2:-16065858 None:intergenic
GTGGAGCTGGTGGCTGAGCA+AGG 0.473173 2:+16066203 MsG0280007484.01.T01:CDS
CGAAGGGAAGGAAGCGATTG+TGG 0.476287 2:+16066280 MsG0280007484.01.T01:CDS
GAGTGTGACGGTGGAGTTGG+TGG 0.481034 2:+16065555 MsG0280007484.01.T01:CDS
AACACACGCCATGTAACTCC+TGG 0.489743 2:-16067422 None:intergenic
AAAGCTCAATTGGAGCTTCA+GGG 0.489989 2:+16066042 MsG0280007484.01.T01:CDS
AAGATCTAGAAGGTCTTGTT+CGG 0.492431 2:-16065445 None:intergenic
GATTGCTTGTTAGAGAAGGT+GGG 0.496800 2:+16066417 MsG0280007484.01.T01:CDS
AGCTATATTCATGCATCTAA+AGG 0.498385 2:-16067356 None:intergenic
GTTGGCGACGCTTCCGTCGC+CGG 0.498477 2:+16065533 MsG0280007484.01.T01:CDS
AAAGAGAGAGCGGTGAGTGC+TGG 0.499031 2:+16066164 MsG0280007484.01.T01:CDS
CCGGAGTGTGACGGTGGAGT+TGG 0.501248 2:+16065552 MsG0280007484.01.T01:CDS
AAGGAAGCGATTGTGGAAGA+AGG 0.502557 2:+16066287 MsG0280007484.01.T01:CDS
AAGCTTGAGAAAGATCTAGA+AGG 0.504088 2:-16065455 None:intergenic
CAAGCTCCAATTTAACCAAA+AGG 0.504254 2:-16067743 None:intergenic
TTAGATGCATGAATATAGCT+AGG 0.505666 2:+16067359 MsG0280007484.01.T01:three_prime_UTR
TCAAAATCACAGCGAAACAT+AGG 0.512047 2:+16065255 MsG0280007484.01.T01:CDS
AATGAAATGAAATTAAAGGC+TGG 0.513835 2:-16064942 None:intergenic
GTTGAACCTGAGCCTTGCAT+GGG 0.513964 2:+16065603 MsG0280007484.01.T01:CDS
CTTCTTCAGTGGCTGTGAAA+CGG 0.515156 2:+16065724 MsG0280007484.01.T01:CDS
ACTGGATCTTCTTGTTCGCA+TGG 0.518937 2:-16065283 None:intergenic
CGCCAACCGTTGAAGCTCAC+CGG 0.520466 2:-16065517 None:intergenic
TTGAAGAAGAGAAGAAGAGA+AGG 0.520591 2:-16065043 None:intergenic
GAAACCATTGTTGAAGGTGA+AGG 0.521147 2:-16065159 None:intergenic
GGATTGCTTGTTAGAGAAGG+TGG 0.521997 2:+16066416 MsG0280007484.01.T01:CDS
TGCTTCGGTGTAGTGATCCA+TGG 0.522512 2:+16065841 MsG0280007484.01.T01:CDS
GTGGTGTTGAATAGCTTAGC+TGG 0.523643 2:+16066251 MsG0280007484.01.T01:CDS
GCTTCCAAGAATCACAAATC+CGG 0.526706 2:+16065408 MsG0280007484.01.T01:CDS
TGGTGGCTGAGCAAGGGAAT+GGG 0.526822 2:+16066210 MsG0280007484.01.T01:CDS
CGAAGCAAAGGAACAAGCAA+AGG 0.532004 2:-16065825 None:intergenic
ACGGTGAAGCTTTGTGTGGA+TGG 0.533537 2:+16065693 MsG0280007484.01.T01:CDS
CTCCGGTGAGCTTCAACGGT+TGG 0.535431 2:+16065515 MsG0280007484.01.T01:CDS
AATTTAACCAAAAGGAGCTA+TGG 0.536811 2:-16067735 None:intergenic
CTCCGCACTTTCACAACAAG+TGG 0.537755 2:-16067669 None:intergenic
CGAAAGATCCACCTGTGTAT+CGG 0.539755 2:+16065341 MsG0280007484.01.T01:CDS
GGAACCTTCACCTTCAACAA+TGG 0.539901 2:+16065155 MsG0280007484.01.T01:exon
GAAGCGATTGTGGAAGAAGG+TGG 0.540304 2:+16066290 MsG0280007484.01.T01:CDS
TGGTTTACAGTCTTCTTCAG+TGG 0.541588 2:+16065713 MsG0280007484.01.T01:CDS
AAGAAACTGATATTTAATGC+TGG 0.543549 2:+16065918 MsG0280007484.01.T01:CDS
GGTCTGCAGCGGCGAAATTG+AGG 0.543913 2:+16065745 MsG0280007484.01.T01:CDS
ATTGAAGATGGGTCTGTGAA+AGG 0.544960 2:+16066335 MsG0280007484.01.T01:CDS
ATATCTCCGGTGAGCTTCAA+CGG 0.550638 2:+16065511 MsG0280007484.01.T01:CDS
TGAGCAAGGGAATGGGATGA+TGG 0.551467 2:+16066217 MsG0280007484.01.T01:CDS
TCTATCGTCGACCTCCGTCT+CGG 0.551730 2:+16065378 MsG0280007484.01.T01:CDS
TGTTGAACCTGAGCCTTGCA+TGG 0.552713 2:+16065602 MsG0280007484.01.T01:CDS
GACACAAGAGCACGCGGTGA+CGG 0.556104 2:+16065863 MsG0280007484.01.T01:CDS
CTTCCGTCGCCGGAGTGTGA+CGG 0.558840 2:+16065543 MsG0280007484.01.T01:CDS
TGGTGGTGGAGGTGATGGTG+TGG 0.561126 2:+16065572 MsG0280007484.01.T01:CDS
TGTTGAATGGTTCTAACAGA+GGG 0.562029 2:+16066090 MsG0280007484.01.T01:CDS
ACCGTCGGTTGAAGATCCTC+CGG 0.563481 2:-16065675 None:intergenic
AACTCCTCGAGCTAAGCATA+AGG 0.564045 2:+16066472 MsG0280007484.01.T01:CDS
AGGTGGAATCGCGGCGCTTG+TGG 0.566826 2:+16066307 MsG0280007484.01.T01:CDS
ATTGATTATTGTGTATATAG+CGG 0.568579 2:+16067243 MsG0280007484.01.T01:three_prime_UTR
TGGTGTGGTGAAGCCGTTGG+TGG 0.571210 2:+16066184 MsG0280007484.01.T01:CDS
TGCTGGTGTGGTGAAGCCGT+TGG 0.572004 2:+16066181 MsG0280007484.01.T01:CDS
ACGGAGGTCGACGATAGAAT+CGG 0.572944 2:-16065373 None:intergenic
CCACCGTCACACTCCGGCGA+CGG 0.574424 2:-16065546 None:intergenic
TTGTGGAAGCCATTGAAGAT+GGG 0.575508 2:+16066324 MsG0280007484.01.T01:CDS
AGAGGATTGCTTGTTAGAGA+AGG 0.577133 2:+16066413 MsG0280007484.01.T01:CDS
TGCGAAAGAGCGACAAGAGG+AGG 0.579038 2:-16066443 None:intergenic
GCTTGTGTTTGGTCCTGCGT+CGG 0.580698 2:-16067539 None:intergenic
GGCTGTGAAACGGTCTGCAG+CGG 0.585635 2:+16065734 MsG0280007484.01.T01:CDS
AGCTGGAATTGACGAAGGGA+AGG 0.585870 2:+16066268 MsG0280007484.01.T01:CDS
TGATTTATGTATTGAAAACA+GGG 0.586738 2:+16065955 MsG0280007484.01.T01:CDS
GATTATTGAGAGTATTTCGC+CGG 0.592143 2:+16065656 MsG0280007484.01.T01:CDS
AGATGGGTCTGTGAAAGGAA+AGG 0.595034 2:+16066340 MsG0280007484.01.T01:CDS
GCTTGTAGTAGTGATATCTC+CGG 0.597721 2:+16065498 MsG0280007484.01.T01:CDS
GCCGGAGGATCTTCAACCGA+CGG 0.599927 2:+16065674 MsG0280007484.01.T01:CDS
AACACAACAAATTGGAACAA+GGG 0.602875 2:-16067398 None:intergenic
TGGGATGATGGAGAAAGCAA+TGG 0.603285 2:+16066229 MsG0280007484.01.T01:CDS
CACTTTCACAACAAGTGGGA+AGG 0.605662 2:-16067664 None:intergenic
TCCCACTTGTTGTGAAAGTG+CGG 0.608019 2:+16067667 MsG0280007484.01.T01:three_prime_UTR
AGCTTAGCTGGAATTGACGA+AGG 0.609188 2:+16066263 MsG0280007484.01.T01:CDS
GTGTGCCAAACATTCTTGGA+AGG 0.610231 2:+16067283 MsG0280007484.01.T01:three_prime_UTR
CGCAGGACCAAACACAAGCA+TGG 0.612428 2:+16067543 MsG0280007484.01.T01:three_prime_UTR
AAGCTCAATTGGAGCTTCAG+GGG 0.614032 2:+16066043 MsG0280007484.01.T01:CDS
GCTGAAAGTGTTACAAACAG+AGG 0.615497 2:+16066395 MsG0280007484.01.T01:CDS
TTTACCTTATGCTTAGCTCG+AGG 0.620491 2:-16066476 None:intergenic
GAAGCCGTTGGTGGAGCTGG+TGG 0.620509 2:+16066193 MsG0280007484.01.T01:CDS
TCATGCTTCAACTACATCCA+CGG 0.621756 2:+16067506 MsG0280007484.01.T01:three_prime_UTR
GGATCACTACACCGAAGCAA+AGG 0.624246 2:-16065837 None:intergenic
GCAAAGAGAGAATTTCTCGA+CGG 0.627327 2:+16065632 MsG0280007484.01.T01:CDS
TATTGAGAGTATTTCGCCGG+AGG 0.627403 2:+16065659 MsG0280007484.01.T01:CDS
TGGAGCTGGTGGCTGAGCAA+GGG 0.629086 2:+16066204 MsG0280007484.01.T01:CDS
TAATCTCAAATTCGTTACAG+TGG 0.630869 2:+16065134 MsG0280007484.01.T01:five_prime_UTR
CTGTTGAATGGTTCTAACAG+AGG 0.632453 2:+16066089 MsG0280007484.01.T01:CDS
TGGAAGCGAGTTCTCCGAGA+CGG 0.633050 2:-16065392 None:intergenic
CCAACTCCACCGTCACACTC+CGG 0.636467 2:-16065552 None:intergenic
CGGTGAATGCTTACCGACGC+AGG 0.638951 2:+16067526 MsG0280007484.01.T01:three_prime_UTR
TTGAACCTGAGCCTTGCATG+GGG 0.643044 2:+16065604 MsG0280007484.01.T01:CDS
AAACACAACAAATTGGAACA+AGG 0.643203 2:-16067399 None:intergenic
TCAGCCACCAGCTCCACCAA+CGG 0.648002 2:-16066197 None:intergenic
TCCACACAAAGCTTCACCGT+CGG 0.651858 2:-16065690 None:intergenic
ACCGACGGTGAAGCTTTGTG+TGG 0.656075 2:+16065689 MsG0280007484.01.T01:CDS
TGTGGAAGAAGGTGGAATCG+CGG 0.656823 2:+16066298 MsG0280007484.01.T01:CDS
CCGTCGCCGGAGTGTGACGG+TGG 0.658339 2:+16065546 MsG0280007484.01.T01:CDS
GAGAGCGGTGAGTGCTGGTG+TGG 0.665360 2:+16066169 MsG0280007484.01.T01:CDS
TTCTGCGAAAGAGCGACAAG+AGG 0.665494 2:-16066446 None:intergenic
GCTTAGCTGGAATTGACGAA+GGG 0.668649 2:+16066264 MsG0280007484.01.T01:CDS
CACGCAGTGAGCTAGTGACA+CGG 0.672430 2:-16067463 None:intergenic
TTCAACAGAAGCGAAACCAA+CGG 0.673733 2:-16066074 None:intergenic
GATGATGGAGAAAGCAATGG+TGG 0.677671 2:+16066232 MsG0280007484.01.T01:CDS
TCCGCACTTTCACAACAAGT+GGG 0.679803 2:-16067668 None:intergenic
TAAGCAGAACAAAGAGAGAG+CGG 0.683784 2:+16066154 MsG0280007484.01.T01:CDS
AAGCGAGTTCTCCGAGACGG+AGG 0.695212 2:-16065389 None:intergenic
TCCATGGACACAAGAGCACG+CGG 0.715830 2:+16065857 MsG0280007484.01.T01:CDS
AACAGAAGCGAAACCAACGG+TGG 0.719199 2:-16066071 None:intergenic
AGAGACTTCTAAGCAGAACG+CGG 0.724526 2:+16065980 MsG0280007484.01.T01:CDS
CGTGTCACTAGCTCACTGCG+TGG 0.734195 2:+16067464 MsG0280007484.01.T01:three_prime_UTR
GCAGTGAGCTAGTGACACGG+TGG 0.777874 2:-16067460 None:intergenic
GCGTCGGTAAGCATTCACCG+TGG 0.796363 2:-16067523 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGATTAATCTTTATAATAAT+AGG - Chr2:16066859-16066878 None:intergenic 10.0%
!! ATGAAATGAAATGAAATTAA+AGG - Chr2:16064949-16064968 None:intergenic 15.0%
!! GTATAATATATATACACAAT+AGG - Chr2:16066695-16066714 None:intergenic 15.0%
!!! ATTAGGTTTTTAAATTTCTT+TGG + Chr2:16067587-16067606 MsG0280007484.01.T01:three_prime_UTR 15.0%
!! AATAGATGAATGATATTGAT+AGG - Chr2:16065232-16065251 None:intergenic 20.0%
!! ACATTTCATGATTAGAATAA+AGG - Chr2:16066622-16066641 None:intergenic 20.0%
!! ATTGATTATTGTGTATATAG+CGG + Chr2:16067243-16067262 MsG0280007484.01.T01:three_prime_UTR 20.0%
!! CATTTCATGATTAGAATAAA+GGG - Chr2:16066621-16066640 None:intergenic 20.0%
!! TGATTTATGTATTGAAAACA+GGG + Chr2:16065955-16065974 MsG0280007484.01.T01:CDS 20.0%
!! TTGATTTATGTATTGAAAAC+AGG + Chr2:16065954-16065973 MsG0280007484.01.T01:CDS 20.0%
!!! ATAAAGTATTCTAATTGATG+TGG + Chr2:16066901-16066920 MsG0280007484.01.T01:intron 20.0%
!!! TAATCCTTGAATTTTTCTTT+AGG + Chr2:16066946-16066965 MsG0280007484.01.T01:intron 20.0%
! AAGAAACTGATATTTAATGC+TGG + Chr2:16065918-16065937 MsG0280007484.01.T01:CDS 25.0%
! AATGCCTAAAGAAAAATTCA+AGG - Chr2:16066953-16066972 None:intergenic 25.0%
! AGAGAACTTAATGAATTAAC+AGG - Chr2:16067094-16067113 None:intergenic 25.0%
! TAATGGAAAACGATTTGAAT+TGG - Chr2:16065202-16065221 None:intergenic 25.0%
! TCAAGATATCTTAAATAACC+AGG - Chr2:16066584-16066603 None:intergenic 25.0%
! TTAAAAACCTAATCAACCAA+AGG - Chr2:16067580-16067599 None:intergenic 25.0%
!! AATAAACCTTTTGAATCCTA+TGG - Chr2:16066528-16066547 None:intergenic 25.0%
!! GAATGATATTGATAGGTTTT+TGG - Chr2:16065225-16065244 None:intergenic 25.0%
!!! ATTTTGGTTATTAGTTAGGA+AGG + Chr2:16067205-16067224 MsG0280007484.01.T01:three_prime_UTR 25.0%
!!! TATTGATAGGTTTTTGGTAA+TGG - Chr2:16065219-16065238 None:intergenic 25.0%
AAACACAACAAATTGGAACA+AGG - Chr2:16067402-16067421 None:intergenic 30.0%
AACACAACAAATTGGAACAA+GGG - Chr2:16067401-16067420 None:intergenic 30.0%
AATAAACCTCGACAAGAAAA+GGG + Chr2:16066729-16066748 MsG0280007484.01.T01:intron 30.0%
AATTTAACCAAAAGGAGCTA+TGG - Chr2:16067738-16067757 None:intergenic 30.0%
AGATATCTTAAATAACCAGG+TGG - Chr2:16066581-16066600 None:intergenic 30.0%
AGCTATATTCATGCATCTAA+AGG - Chr2:16067359-16067378 None:intergenic 30.0%
ATATCTTGACTTTGAGTGTT+TGG + Chr2:16066595-16066614 MsG0280007484.01.T01:intron 30.0%
GAAGAGAATAAAAGCTCAAT+TGG + Chr2:16066032-16066051 MsG0280007484.01.T01:CDS 30.0%
TAATAAACCTCGACAAGAAA+AGG + Chr2:16066728-16066747 MsG0280007484.01.T01:intron 30.0%
TAATCTCAAATTCGTTACAG+TGG + Chr2:16065134-16065153 MsG0280007484.01.T01:five_prime_UTR 30.0%
TTAGATGCATGAATATAGCT+AGG + Chr2:16067359-16067378 MsG0280007484.01.T01:three_prime_UTR 30.0%
TTCATACCATAGGATTCAAA+AGG + Chr2:16066519-16066538 MsG0280007484.01.T01:intron 30.0%
! ACTGTAACGAATTTGAGATT+AGG - Chr2:16065135-16065154 None:intergenic 30.0%
! AGAGAAGTAATTGCGTATTT+TGG + Chr2:16067189-16067208 MsG0280007484.01.T01:exon 30.0%
! CAAACGTACACATATTTTCA+TGG + Chr2:16067899-16067918 MsG0280007484.01.T01:three_prime_UTR 30.0%
! CTGTAACGAATTTGAGATTA+GGG - Chr2:16065134-16065153 None:intergenic 30.0%
! GAACATAGTCAAAAGTTTTC+AGG - Chr2:16066665-16066684 None:intergenic 30.0%
! TTAGTAATTTTATGACCACC+TGG + Chr2:16066563-16066582 MsG0280007484.01.T01:intron 30.0%
! TTTTTGTGGAAGAATAGATC+TGG + Chr2:16067050-16067069 MsG0280007484.01.T01:intron 30.0%
!! ATAGCTCCTTTTGGTTAAAT+TGG + Chr2:16067737-16067756 MsG0280007484.01.T01:three_prime_UTR 30.0%
!! CAAAAGTTTTCAGGAAAAAC+AGG - Chr2:16066656-16066675 None:intergenic 30.0%
!!! GCGTATTTTGGTTATTAGTT+AGG + Chr2:16067201-16067220 MsG0280007484.01.T01:three_prime_UTR 30.0%
AACATCCTTCCAAGAATGTT+TGG - Chr2:16067291-16067310 None:intergenic 35.0%
AAGCTTGAGAAAGATCTAGA+AGG - Chr2:16065458-16065477 None:intergenic 35.0%
ATAGTGAGAAAAAGTGAGTG+TGG - Chr2:16065069-16065088 None:intergenic 35.0%
CAAGCTCCAATTTAACCAAA+AGG - Chr2:16067746-16067765 None:intergenic 35.0%
GTTATCTTCATCGAAGATAC+TGG - Chr2:16065304-16065323 None:intergenic 35.0%
TCAAAATCACAGCGAAACAT+AGG + Chr2:16065255-16065274 MsG0280007484.01.T01:CDS 35.0%
TCTAGAGAAACCATTGTTGA+AGG - Chr2:16065168-16065187 None:intergenic 35.0%
TGCATGAATATAGCTAGGTT+TGG + Chr2:16067364-16067383 MsG0280007484.01.T01:three_prime_UTR 35.0%
TTAACTGTCAGTCAACATCT+GGG + Chr2:16066831-16066850 MsG0280007484.01.T01:intron 35.0%
TTGAAGAAGAGAAGAAGAGA+AGG - Chr2:16065046-16065065 None:intergenic 35.0%
TTTCTCTCTATCATTGCTCT+TGG + Chr2:16067023-16067042 MsG0280007484.01.T01:intron 35.0%
! AAACCCTTTTCCCAAAACTA+GGG - Chr2:16067622-16067641 None:intergenic 35.0%
! TGCATTTTGCTTCATACCAT+AGG + Chr2:16066509-16066528 MsG0280007484.01.T01:intron 35.0%
! TTTTCCGGATTTGTGATTCT+TGG - Chr2:16065415-16065434 None:intergenic 35.0%
!! AAGATCTAGAAGGTCTTGTT+CGG - Chr2:16065448-16065467 None:intergenic 35.0%
!! GATTATTGAGAGTATTTCGC+CGG + Chr2:16065656-16065675 MsG0280007484.01.T01:CDS 35.0%
!! TGTTGAATGGTTCTAACAGA+GGG + Chr2:16066090-16066109 MsG0280007484.01.T01:CDS 35.0%
!! TTCCAATTTGTTGTGTTTCC+AGG + Chr2:16067404-16067423 MsG0280007484.01.T01:three_prime_UTR 35.0%
!!! AGTTCTCTGTTTTGTTTTGC+AGG + Chr2:16067106-16067125 MsG0280007484.01.T01:intron 35.0%
!!! GCTGATAATCGTGTTTTGAT+TGG + Chr2:16065786-16065805 MsG0280007484.01.T01:CDS 35.0%
!!! TTCGGAAGTTGATGATTTTC+CGG - Chr2:16065430-16065449 None:intergenic 35.0%
!!! TTGCTCTTGGCTATTTTTTG+TGG + Chr2:16067036-16067055 MsG0280007484.01.T01:intron 35.0%
AAAAGCTCAATTGGAGCTTC+AGG + Chr2:16066041-16066060 MsG0280007484.01.T01:CDS 40.0%
AAAGCTCAATTGGAGCTTCA+GGG + Chr2:16066042-16066061 MsG0280007484.01.T01:CDS 40.0%
AACAGATGAAGCTGAGTAAC+TGG - Chr2:16067816-16067835 None:intergenic 40.0%
AAGACAACCATGCTTGTGTT+TGG - Chr2:16067553-16067572 None:intergenic 40.0%
ATTGAAGATGGGTCTGTGAA+AGG + Chr2:16066335-16066354 MsG0280007484.01.T01:CDS 40.0%
CTAATTGATGTGGCTGAATG+AGG + Chr2:16066911-16066930 MsG0280007484.01.T01:intron 40.0%
CTCCTGGAAACACAACAAAT+TGG - Chr2:16067409-16067428 None:intergenic 40.0%
CTTAACTGTCAGTCAACATC+TGG + Chr2:16066830-16066849 MsG0280007484.01.T01:intron 40.0%
CTTTGAGCCTTTGGTTGATT+AGG + Chr2:16067570-16067589 MsG0280007484.01.T01:three_prime_UTR 40.0%
CTTTGCTTGTTCCTTTGCTT+CGG + Chr2:16065826-16065845 MsG0280007484.01.T01:CDS 40.0%
GAAACCATTGTTGAAGGTGA+AGG - Chr2:16065162-16065181 None:intergenic 40.0%
GCAAAGAGAGAATTTCTCGA+CGG + Chr2:16065632-16065651 MsG0280007484.01.T01:CDS 40.0%
GCTTCCAAGAATCACAAATC+CGG + Chr2:16065408-16065427 MsG0280007484.01.T01:CDS 40.0%
GCTTGTAGTAGTGATATCTC+CGG + Chr2:16065498-16065517 MsG0280007484.01.T01:CDS 40.0%
TAAGCAGAACAAAGAGAGAG+CGG + Chr2:16066154-16066173 MsG0280007484.01.T01:CDS 40.0%
TACAGTGTGCCAAACATTCT+TGG + Chr2:16067279-16067298 MsG0280007484.01.T01:three_prime_UTR 40.0%
TCATGCTTCAACTACATCCA+CGG + Chr2:16067506-16067525 MsG0280007484.01.T01:three_prime_UTR 40.0%
TGGTTTACAGTCTTCTTCAG+TGG + Chr2:16065713-16065732 MsG0280007484.01.T01:CDS 40.0%
TTCAACAGAAGCGAAACCAA+CGG - Chr2:16066077-16066096 None:intergenic 40.0%
TTGGTTTCGCTTCTGTTGAA+TGG + Chr2:16066077-16066096 MsG0280007484.01.T01:CDS 40.0%
TTGTGGAAGCCATTGAAGAT+GGG + Chr2:16066324-16066343 MsG0280007484.01.T01:CDS 40.0%
TTGTGTTTCCAGGAGTTACA+TGG + Chr2:16067414-16067433 MsG0280007484.01.T01:three_prime_UTR 40.0%
TTTACCTTATGCTTAGCTCG+AGG - Chr2:16066479-16066498 None:intergenic 40.0%
TTTCACAGACCCATCTTCAA+TGG - Chr2:16066336-16066355 None:intergenic 40.0%
! AGAGGATTGCTTGTTAGAGA+AGG + Chr2:16066413-16066432 MsG0280007484.01.T01:CDS 40.0%
! GAAACCCTTTTCCCAAAACT+AGG - Chr2:16067623-16067642 None:intergenic 40.0%
! GATTGCTTGTTAGAGAAGGT+GGG + Chr2:16066417-16066436 MsG0280007484.01.T01:CDS 40.0%
!! CTGTTGAATGGTTCTAACAG+AGG + Chr2:16066089-16066108 MsG0280007484.01.T01:CDS 40.0%
!! GCTGAAAGTGTTACAAACAG+AGG + Chr2:16066395-16066414 MsG0280007484.01.T01:CDS 40.0%
!! GTACAGATGACCCTAGTTTT+GGG + Chr2:16067609-16067628 MsG0280007484.01.T01:three_prime_UTR 40.0%
!!! ATGACCCTAGTTTTGGGAAA+AGG + Chr2:16067615-16067634 MsG0280007484.01.T01:three_prime_UTR 40.0%
!!! CGTGTTTTGATTGGTGAATC+AGG + Chr2:16065795-16065814 MsG0280007484.01.T01:CDS 40.0%
!!! TCTTTTGAGTTTAGCGTTGG+TGG + Chr2:16066010-16066029 MsG0280007484.01.T01:CDS 40.0%
!!! TGACCCTAGTTTTGGGAAAA+GGG + Chr2:16067616-16067635 MsG0280007484.01.T01:three_prime_UTR 40.0%
!!! TGCTCTTTTGAGTTTAGCGT+TGG + Chr2:16066007-16066026 MsG0280007484.01.T01:CDS 40.0%
AACTCCTCGAGCTAAGCATA+AGG + Chr2:16066472-16066491 MsG0280007484.01.T01:CDS 45.0%
AAGCTCAATTGGAGCTTCAG+GGG + Chr2:16066043-16066062 MsG0280007484.01.T01:CDS 45.0%
AAGGAAGCGATTGTGGAAGA+AGG + Chr2:16066287-16066306 MsG0280007484.01.T01:CDS 45.0%
ACTGGATCTTCTTGTTCGCA+TGG - Chr2:16065286-16065305 None:intergenic 45.0%
AGAGACTTCTAAGCAGAACG+CGG + Chr2:16065980-16065999 MsG0280007484.01.T01:CDS 45.0%
AGATGGGTCTGTGAAAGGAA+AGG + Chr2:16066340-16066359 MsG0280007484.01.T01:CDS 45.0%
AGCTTAGCTGGAATTGACGA+AGG + Chr2:16066263-16066282 MsG0280007484.01.T01:CDS 45.0%
ATATCTCCGGTGAGCTTCAA+CGG + Chr2:16065511-16065530 MsG0280007484.01.T01:CDS 45.0%
CACTTTCACAACAAGTGGGA+AGG - Chr2:16067667-16067686 None:intergenic 45.0%
CATGGTTGTCTTTGAGCCTT+TGG + Chr2:16067561-16067580 MsG0280007484.01.T01:three_prime_UTR 45.0%
CCTAGTACTTCACTGCTATC+TGG + Chr2:16067699-16067718 MsG0280007484.01.T01:three_prime_UTR 45.0%
CGAAAGATCCACCTGTGTAT+CGG + Chr2:16065341-16065360 MsG0280007484.01.T01:CDS 45.0%
CGAAGCAAAGGAACAAGCAA+AGG - Chr2:16065828-16065847 None:intergenic 45.0%
CGATACACAGGTGGATCTTT+CGG - Chr2:16065343-16065362 None:intergenic 45.0%
CTTCTTCAGTGGCTGTGAAA+CGG + Chr2:16065724-16065743 MsG0280007484.01.T01:CDS 45.0%
CTTGTGGAAGCCATTGAAGA+TGG + Chr2:16066323-16066342 MsG0280007484.01.T01:CDS 45.0%
CTTTGCAAAAACCCCATGCA+AGG - Chr2:16065618-16065637 None:intergenic 45.0%
GCTTAGCTGGAATTGACGAA+GGG + Chr2:16066264-16066283 MsG0280007484.01.T01:CDS 45.0%
GGAACCTTCACCTTCAACAA+TGG + Chr2:16065155-16065174 MsG0280007484.01.T01:exon 45.0%
GTGTGCCAAACATTCTTGGA+AGG + Chr2:16067283-16067302 MsG0280007484.01.T01:three_prime_UTR 45.0%
TCCGCACTTTCACAACAAGT+GGG - Chr2:16067671-16067690 None:intergenic 45.0%
TGTGTATATAGCGGCTTTGC+TGG + Chr2:16067252-16067271 MsG0280007484.01.T01:three_prime_UTR 45.0%
! AGAAGACCCTTTTCTTGTCG+AGG - Chr2:16066738-16066757 None:intergenic 45.0%
! CCAGATAGCAGTGAAGTACT+AGG - Chr2:16067702-16067721 None:intergenic 45.0%
! GAGATTTTCCGATACACAGG+TGG - Chr2:16065352-16065371 None:intergenic 45.0%
! GGATTGCTTGTTAGAGAAGG+TGG + Chr2:16066416-16066435 MsG0280007484.01.T01:CDS 45.0%
! GGTACAGATGACCCTAGTTT+TGG + Chr2:16067608-16067627 MsG0280007484.01.T01:three_prime_UTR 45.0%
! GGTGAGATTTTCCGATACAC+AGG - Chr2:16065355-16065374 None:intergenic 45.0%
! GTGGTGTTGAATAGCTTAGC+TGG + Chr2:16066251-16066270 MsG0280007484.01.T01:CDS 45.0%
! TCTGTGTCCATAGCTCCTTT+TGG + Chr2:16067728-16067747 MsG0280007484.01.T01:three_prime_UTR 45.0%
!! GATGATGGAGAAAGCAATGG+TGG + Chr2:16066232-16066251 MsG0280007484.01.T01:CDS 45.0%
!! TATTGAGAGTATTTCGCCGG+AGG + Chr2:16065659-16065678 MsG0280007484.01.T01:CDS 45.0%
!! TCCCACTTGTTGTGAAAGTG+CGG + Chr2:16067667-16067686 MsG0280007484.01.T01:three_prime_UTR 45.0%
!! TGGGATGATGGAGAAAGCAA+TGG + Chr2:16066229-16066248 MsG0280007484.01.T01:CDS 45.0%
AAAAACCCCATGCAAGGCTC+AGG - Chr2:16065612-16065631 None:intergenic 50.0%
AACACACGCCATGTAACTCC+TGG - Chr2:16067425-16067444 None:intergenic 50.0%
AACAGAAGCGAAACCAACGG+TGG - Chr2:16066074-16066093 None:intergenic 50.0%
ACGGAGGTCGACGATAGAAT+CGG - Chr2:16065376-16065395 None:intergenic 50.0%
AGCTGGAATTGACGAAGGGA+AGG + Chr2:16066268-16066287 MsG0280007484.01.T01:CDS 50.0%
CTCCGCACTTTCACAACAAG+TGG - Chr2:16067672-16067691 None:intergenic 50.0%
CTTGTCGCTCTTTCGCAGAA+TGG + Chr2:16066449-16066468 MsG0280007484.01.T01:CDS 50.0%
GAAGCGATTGTGGAAGAAGG+TGG + Chr2:16066290-16066309 MsG0280007484.01.T01:CDS 50.0%
GGAGTTACATGGCGTGTGTT+TGG + Chr2:16067425-16067444 MsG0280007484.01.T01:three_prime_UTR 50.0%
GGATCACTACACCGAAGCAA+AGG - Chr2:16065840-16065859 None:intergenic 50.0%
GTTGAACCTGAGCCTTGCAT+GGG + Chr2:16065603-16065622 MsG0280007484.01.T01:CDS 50.0%
TCCACACAAAGCTTCACCGT+CGG - Chr2:16065693-16065712 None:intergenic 50.0%
TGAGCAAGGGAATGGGATGA+TGG + Chr2:16066217-16066236 MsG0280007484.01.T01:CDS 50.0%
TGTGGAAGAAGGTGGAATCG+CGG + Chr2:16066298-16066317 MsG0280007484.01.T01:CDS 50.0%
TGTTGAACCTGAGCCTTGCA+TGG + Chr2:16065602-16065621 MsG0280007484.01.T01:CDS 50.0%
TTCTGCGAAAGAGCGACAAG+AGG - Chr2:16066449-16066468 None:intergenic 50.0%
TTGAACCTGAGCCTTGCATG+GGG + Chr2:16065604-16065623 MsG0280007484.01.T01:CDS 50.0%
! ACGGTGAAGCTTTGTGTGGA+TGG + Chr2:16065693-16065712 MsG0280007484.01.T01:CDS 50.0%
! AGCTAGTGACACGGTGGATT+CGG - Chr2:16067457-16067476 None:intergenic 50.0%
! TGCTTCGGTGTAGTGATCCA+TGG + Chr2:16065841-16065860 MsG0280007484.01.T01:CDS 50.0%
AAAGAGAGAGCGGTGAGTGC+TGG + Chr2:16066164-16066183 MsG0280007484.01.T01:CDS 55.0%
CACGCAGTGAGCTAGTGACA+CGG - Chr2:16067466-16067485 None:intergenic 55.0%
CGAAGGGAAGGAAGCGATTG+TGG + Chr2:16066280-16066299 MsG0280007484.01.T01:CDS 55.0%
CGCAGGACCAAACACAAGCA+TGG + Chr2:16067543-16067562 MsG0280007484.01.T01:three_prime_UTR 55.0%
GCTTGTGTTTGGTCCTGCGT+CGG - Chr2:16067542-16067561 None:intergenic 55.0%
TCTATCGTCGACCTCCGTCT+CGG + Chr2:16065378-16065397 MsG0280007484.01.T01:CDS 55.0%
TGCGAAAGAGCGACAAGAGG+AGG - Chr2:16066446-16066465 None:intergenic 55.0%
TGGAAGCGAGTTCTCCGAGA+CGG - Chr2:16065395-16065414 None:intergenic 55.0%
TGGTGGCTGAGCAAGGGAAT+GGG + Chr2:16066210-16066229 MsG0280007484.01.T01:CDS 55.0%
! ACCGACGGTGAAGCTTTGTG+TGG + Chr2:16065689-16065708 MsG0280007484.01.T01:CDS 55.0%
! ACCGTCGGTTGAAGATCCTC+CGG - Chr2:16065678-16065697 None:intergenic 55.0%
! TCCATGGACACAAGAGCACG+CGG + Chr2:16065857-16065876 MsG0280007484.01.T01:CDS 55.0%
AAGCGAGTTCTCCGAGACGG+AGG - Chr2:16065392-16065411 None:intergenic 60.0%
ACCGCGTGCTCTTGTGTCCA+TGG - Chr2:16065861-16065880 None:intergenic 60.0%
CCAACTCCACCGTCACACTC+CGG - Chr2:16065555-16065574 None:intergenic 60.0%
CGCCAACCGTTGAAGCTCAC+CGG - Chr2:16065520-16065539 None:intergenic 60.0%
CGGTGAATGCTTACCGACGC+AGG + Chr2:16067526-16067545 MsG0280007484.01.T01:three_prime_UTR 60.0%
CTCCGGTGAGCTTCAACGGT+TGG + Chr2:16065515-16065534 MsG0280007484.01.T01:CDS 60.0%
CTGGTGGCTGAGCAAGGGAA+TGG + Chr2:16066209-16066228 MsG0280007484.01.T01:CDS 60.0%
GAGTGTGACGGTGGAGTTGG+TGG + Chr2:16065555-16065574 MsG0280007484.01.T01:CDS 60.0%
GCAGTGAGCTAGTGACACGG+TGG - Chr2:16067463-16067482 None:intergenic 60.0%
GCCGGAGGATCTTCAACCGA+CGG + Chr2:16065674-16065693 MsG0280007484.01.T01:CDS 60.0%
GGCTGTGAAACGGTCTGCAG+CGG + Chr2:16065734-16065753 MsG0280007484.01.T01:CDS 60.0%
GGTCTGCAGCGGCGAAATTG+AGG + Chr2:16065745-16065764 MsG0280007484.01.T01:CDS 60.0%
TCAGCCACCAGCTCCACCAA+CGG - Chr2:16066200-16066219 None:intergenic 60.0%
TGCTGGTGTGGTGAAGCCGT+TGG + Chr2:16066181-16066200 MsG0280007484.01.T01:CDS 60.0%
TGGAGCTGGTGGCTGAGCAA+GGG + Chr2:16066204-16066223 MsG0280007484.01.T01:CDS 60.0%
TGGTGTGGTGAAGCCGTTGG+TGG + Chr2:16066184-16066203 MsG0280007484.01.T01:CDS 60.0%
TTCAGGGGCGATTCCACCGT+TGG + Chr2:16066058-16066077 MsG0280007484.01.T01:CDS 60.0%
! CGTGTCACTAGCTCACTGCG+TGG + Chr2:16067464-16067483 MsG0280007484.01.T01:three_prime_UTR 60.0%
! GACACAAGAGCACGCGGTGA+CGG + Chr2:16065863-16065882 MsG0280007484.01.T01:CDS 60.0%
! GCGTCGGTAAGCATTCACCG+TGG - Chr2:16067526-16067545 None:intergenic 60.0%
!! GGAGTTGGTGGTGGAGGTGA+TGG + Chr2:16065567-16065586 MsG0280007484.01.T01:CDS 60.0%
!! TGGTGGTGGAGGTGATGGTG+TGG + Chr2:16065572-16065591 MsG0280007484.01.T01:CDS 60.0%
!! TGTGACGGTGGAGTTGGTGG+TGG + Chr2:16065558-16065577 MsG0280007484.01.T01:CDS 60.0%
AGGTGGAATCGCGGCGCTTG+TGG + Chr2:16066307-16066326 MsG0280007484.01.T01:CDS 65.0%
CCGGAGTGTGACGGTGGAGT+TGG + Chr2:16065552-16065571 MsG0280007484.01.T01:CDS 65.0%
CTTCCGTCGCCGGAGTGTGA+CGG + Chr2:16065543-16065562 MsG0280007484.01.T01:CDS 65.0%
GTGGAGCTGGTGGCTGAGCA+AGG + Chr2:16066203-16066222 MsG0280007484.01.T01:CDS 65.0%
! GAAGCCGTTGGTGGAGCTGG+TGG + Chr2:16066193-16066212 MsG0280007484.01.T01:CDS 65.0%
! GGTGAAGCCGTTGGTGGAGC+TGG + Chr2:16066190-16066209 MsG0280007484.01.T01:CDS 65.0%
!! GACGGTGGAGTTGGTGGTGG+AGG + Chr2:16065561-16065580 MsG0280007484.01.T01:CDS 65.0%
!! GAGAGCGGTGAGTGCTGGTG+TGG + Chr2:16066169-16066188 MsG0280007484.01.T01:CDS 65.0%
CCACCGTCACACTCCGGCGA+CGG - Chr2:16065549-16065568 None:intergenic 70.0%
GTTGGCGACGCTTCCGTCGC+CGG + Chr2:16065533-16065552 MsG0280007484.01.T01:CDS 70.0%
CCGTCGCCGGAGTGTGACGG+TGG + Chr2:16065546-16065565 MsG0280007484.01.T01:CDS 75.0%
Chromosome Type Strat End Strand Name
Chr2 gene 16064944 16067921 16064944 ID=MsG0280007484.01;Name=MsG0280007484.01
Chr2 mRNA 16064944 16067921 16064944 ID=MsG0280007484.01.T01;Parent=MsG0280007484.01;Name=MsG0280007484.01.T01;_AED=0.26;_eAED=0.26;_QI=230|1|1|1|1|1|2|731|460
Chr2 exon 16064944 16066493 16064944 ID=MsG0280007484.01.T01:exon:1136;Parent=MsG0280007484.01.T01
Chr2 exon 16067128 16067921 16067128 ID=MsG0280007484.01.T01:exon:1137;Parent=MsG0280007484.01.T01
Chr2 five_prime_UTR 16064944 16065173 16064944 ID=MsG0280007484.01.T01:five_prime_utr;Parent=MsG0280007484.01.T01
Chr2 CDS 16065174 16066493 16065174 ID=MsG0280007484.01.T01:cds;Parent=MsG0280007484.01.T01
Chr2 CDS 16067128 16067190 16067128 ID=MsG0280007484.01.T01:cds;Parent=MsG0280007484.01.T01
Chr2 three_prime_UTR 16067191 16067921 16067191 ID=MsG0280007484.01.T01:three_prime_utr;Parent=MsG0280007484.01.T01
Gene Sequence

>MsG0280007484.01.T01

ATGGTTTCTCTAGAAGATTCTCGTTCCAATTCAAATCGTTTTCCATTACCAAAAACCTATCAATATCATTCATCTATTTCTTCAAAATCACAGCGAAACATAGGAAGATCCATGCGAACAAGAAGATCCAGTATCTTCGATGAAGATAACAGTAGCTGCACTTTCACCGAAAGATCCACCTGTGTATCGGAAAATCTCACCGATTCTATCGTCGACCTCCGTCTCGGAGAACTCGCTTCCAAGAATCACAAATCCGGAAAATCATCAACTTCCGAACAAGACCTTCTAGATCTTTCTCAAGCTTTTAGTGAATATGCTTATTCAGCTTGTAGTAGTGATATCTCCGGTGAGCTTCAACGGTTGGCGACGCTTCCGTCGCCGGAGTGTGACGGTGGAGTTGGTGGTGGAGGTGATGGTGTGGTTGAAGTTGTTGAACCTGAGCCTTGCATGGGGTTTTTGCAAAGAGAGAATTTCTCGACGGAGATTATTGAGAGTATTTCGCCGGAGGATCTTCAACCGACGGTGAAGCTTTGTGTGGATGGTTTACAGTCTTCTTCAGTGGCTGTGAAACGGTCTGCAGCGGCGAAATTGAGGTTGCTTGCGAAGAATCGAGCTGATAATCGTGTTTTGATTGGTGAATCAGGTGCTGTGCCTTTGCTTGTTCCTTTGCTTCGGTGTAGTGATCCATGGACACAAGAGCACGCGGTGACGGCGTTGTTGAATCTTTCTCTTCATGAAGATAACAAGAAACTGATATTTAATGCTGGAGCTGTGAAATCGTTGATTTATGTATTGAAAACAGGGACAGAGACTTCTAAGCAGAACGCGGCTTGTGCTCTTTTGAGTTTAGCGTTGGTGGAAGAGAATAAAAGCTCAATTGGAGCTTCAGGGGCGATTCCACCGTTGGTTTCGCTTCTGTTGAATGGTTCTAACAGAGGGAAGAAAGATGCATTAACGACGTTGTACAAGCTTTGTTCTGTTAAGCAGAACAAAGAGAGAGCGGTGAGTGCTGGTGTGGTGAAGCCGTTGGTGGAGCTGGTGGCTGAGCAAGGGAATGGGATGATGGAGAAAGCAATGGTGGTGTTGAATAGCTTAGCTGGAATTGACGAAGGGAAGGAAGCGATTGTGGAAGAAGGTGGAATCGCGGCGCTTGTGGAAGCCATTGAAGATGGGTCTGTGAAAGGAAAGGAATTTGCTGTTTTAACACTTTTGCAGCTTTGTGCTGAAAGTGTTACAAACAGAGGATTGCTTGTTAGAGAAGGTGGGATTCCTCCTCTTGTCGCTCTTTCGCAGAATGGAACTCCTCGAGCTAAGCATAAGGCTGAGACGCTTCTTCGATATTTGCGAGAATCAAGACAAGAAGCATCAACTTCAACTTCGTAG

Protein sequence

>MsG0280007484.01.T01

MVSLEDSRSNSNRFPLPKTYQYHSSISSKSQRNIGRSMRTRRSSIFDEDNSSCTFTERSTCVSENLTDSIVDLRLGELASKNHKSGKSSTSEQDLLDLSQAFSEYAYSACSSDISGELQRLATLPSPECDGGVGGGGDGVVEVVEPEPCMGFLQRENFSTEIIESISPEDLQPTVKLCVDGLQSSSVAVKRSAAAKLRLLAKNRADNRVLIGESGAVPLLVPLLRCSDPWTQEHAVTALLNLSLHEDNKKLIFNAGAVKSLIYVLKTGTETSKQNAACALLSLALVEENKSSIGASGAIPPLVSLLLNGSNRGKKDALTTLYKLCSVKQNKERAVSAGVVKPLVELVAEQGNGMMEKAMVVLNSLAGIDEGKEAIVEEGGIAALVEAIEDGSVKGKEFAVLTLLQLCAESVTNRGLLVREGGIPPLVALSQNGTPRAKHKAETLLRYLRESRQEASTSTS*