Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025602.01.T01 | AES95931.1 | 97.23 | 361 | 10 | 0 | 1 | 361 | 1 | 361 | 0 | 724 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025602.01.T01 | Q9ZRF1 | 75.843 | 356 | 86 | 0 | 6 | 361 | 4 | 359 | 0 | 556 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025602.01.T01 | A0A396HQW5 | 97.230 | 361 | 10 | 0 | 1 | 361 | 33 | 393 | 0.0 | 724 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025602.01.T01 | MTR_5g031190 | 97.230 | 361 | 10 | 0 | 1 | 361 | 1 | 361 | 0.0 | 724 |
| MsG0580025602.01.T01 | MTR_5g031180 | 86.427 | 361 | 49 | 0 | 1 | 361 | 1 | 361 | 0.0 | 609 |
| MsG0580025602.01.T01 | MTR_8g068190 | 80.833 | 360 | 69 | 0 | 1 | 360 | 1 | 360 | 0.0 | 578 |
| MsG0580025602.01.T01 | MTR_5g031250 | 77.839 | 361 | 80 | 0 | 1 | 361 | 1 | 361 | 0.0 | 576 |
| MsG0580025602.01.T01 | MTR_5g031390 | 76.454 | 361 | 85 | 0 | 1 | 361 | 1 | 361 | 0.0 | 571 |
| MsG0580025602.01.T01 | MTR_5g031230 | 75.900 | 361 | 87 | 0 | 1 | 361 | 1 | 361 | 0.0 | 569 |
| MsG0580025602.01.T01 | MTR_4g115300 | 75.069 | 361 | 90 | 0 | 1 | 361 | 1 | 361 | 0.0 | 563 |
| MsG0580025602.01.T01 | MTR_5g031310 | 76.271 | 354 | 84 | 0 | 7 | 360 | 8 | 361 | 0.0 | 560 |
| MsG0580025602.01.T01 | MTR_5g031360 | 76.068 | 351 | 84 | 0 | 10 | 360 | 12 | 362 | 0.0 | 557 |
| MsG0580025602.01.T01 | MTR_5g031305 | 74.792 | 361 | 90 | 1 | 1 | 360 | 1 | 361 | 0.0 | 554 |
| MsG0580025602.01.T01 | MTR_5g031300 | 72.676 | 355 | 97 | 0 | 7 | 361 | 8 | 362 | 0.0 | 541 |
| MsG0580025602.01.T01 | MTR_5g031210 | 74.515 | 361 | 92 | 0 | 1 | 361 | 1 | 361 | 0.0 | 541 |
| MsG0580025602.01.T01 | MTR_8g092630 | 64.146 | 357 | 122 | 2 | 8 | 359 | 60 | 415 | 3.58e-152 | 435 |
| MsG0580025602.01.T01 | MTR_5g031430 | 62.029 | 345 | 131 | 0 | 14 | 358 | 14 | 358 | 1.35e-147 | 421 |
| MsG0580025602.01.T01 | MTR_1g025950 | 57.382 | 359 | 152 | 1 | 3 | 360 | 2 | 360 | 1.85e-138 | 398 |
| MsG0580025602.01.T01 | MTR_5g031250 | 76.763 | 241 | 56 | 0 | 1 | 241 | 1 | 241 | 3.68e-134 | 383 |
| MsG0580025602.01.T01 | MTR_1g107425 | 52.770 | 343 | 162 | 0 | 11 | 353 | 9 | 351 | 4.27e-124 | 361 |
| MsG0580025602.01.T01 | MTR_2g009810 | 54.046 | 346 | 157 | 2 | 14 | 358 | 62 | 406 | 6.10e-123 | 360 |
| MsG0580025602.01.T01 | MTR_1g107425 | 52.083 | 288 | 138 | 0 | 11 | 298 | 9 | 296 | 1.66e-98 | 294 |
| MsG0580025602.01.T01 | MTR_2g009820 | 50.800 | 250 | 113 | 4 | 116 | 358 | 8 | 254 | 3.23e-69 | 218 |
| MsG0580025602.01.T01 | MTR_5g031290 | 73.684 | 114 | 30 | 0 | 247 | 360 | 80 | 193 | 1.85e-54 | 177 |
| MsG0580025602.01.T01 | MTR_5g031290 | 80.000 | 80 | 15 | 1 | 1 | 79 | 1 | 80 | 5.88e-41 | 142 |
| MsG0580025602.01.T01 | MTR_8g095220 | 27.143 | 280 | 174 | 7 | 25 | 278 | 68 | 343 | 8.49e-24 | 102 |
| MsG0580025602.01.T01 | MTR_8g095220 | 28.512 | 242 | 148 | 6 | 25 | 245 | 68 | 305 | 3.06e-23 | 99.0 |
| MsG0580025602.01.T01 | MTR_3g089940 | 24.044 | 366 | 239 | 14 | 11 | 344 | 12 | 370 | 7.49e-18 | 84.3 |
| MsG0580025602.01.T01 | MTR_3g089977 | 23.467 | 375 | 249 | 13 | 11 | 354 | 12 | 379 | 7.78e-18 | 84.3 |
| MsG0580025602.01.T01 | MTR_3g089940 | 23.964 | 338 | 221 | 12 | 39 | 344 | 37 | 370 | 1.52e-17 | 83.6 |
| MsG0580025602.01.T01 | MTR_0001s0660 | 25.828 | 302 | 200 | 9 | 38 | 318 | 35 | 333 | 4.44e-17 | 82.8 |
| MsG0580025602.01.T01 | MTR_3g089940 | 24.251 | 334 | 222 | 12 | 11 | 319 | 12 | 339 | 5.33e-16 | 78.6 |
| MsG0580025602.01.T01 | MTR_3g089970 | 23.373 | 338 | 223 | 12 | 39 | 344 | 38 | 371 | 6.33e-16 | 78.6 |
| MsG0580025602.01.T01 | MTR_3g089940 | 23.952 | 334 | 223 | 12 | 11 | 319 | 12 | 339 | 1.00e-15 | 77.8 |
| MsG0580025602.01.T01 | MTR_6g465010 | 26.224 | 286 | 188 | 8 | 15 | 288 | 3 | 277 | 2.59e-15 | 76.6 |
| MsG0580025602.01.T01 | MTR_6g466320 | 26.224 | 286 | 188 | 8 | 15 | 288 | 19 | 293 | 2.71e-15 | 76.6 |
| MsG0580025602.01.T01 | MTR_6g465010 | 26.224 | 286 | 188 | 8 | 15 | 288 | 19 | 293 | 2.71e-15 | 76.6 |
| MsG0580025602.01.T01 | MTR_1g069430 | 23.739 | 337 | 226 | 9 | 1 | 312 | 1 | 331 | 1.00e-13 | 72.0 |
| MsG0580025602.01.T01 | MTR_7g068320 | 26.074 | 349 | 221 | 14 | 39 | 353 | 48 | 393 | 1.78e-13 | 71.2 |
| MsG0580025602.01.T01 | MTR_5g045710 | 24.918 | 305 | 200 | 9 | 38 | 318 | 35 | 334 | 3.26e-13 | 70.5 |
| MsG0580025602.01.T01 | MTR_7g099040 | 23.659 | 317 | 209 | 8 | 38 | 327 | 37 | 347 | 3.23e-12 | 67.4 |
| MsG0580025602.01.T01 | MTR_3g099460 | 26.537 | 309 | 197 | 8 | 39 | 319 | 37 | 343 | 7.95e-11 | 63.2 |
| MsG0580025602.01.T01 | MTR_3g099460 | 26.537 | 309 | 197 | 8 | 39 | 319 | 44 | 350 | 9.15e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025602.01.T01 | AT4G37970 | 66.197 | 355 | 120 | 0 | 6 | 360 | 7 | 361 | 2.79e-172 | 484 |
| MsG0580025602.01.T01 | AT4G37980 | 71.714 | 350 | 99 | 0 | 11 | 360 | 7 | 356 | 5.06e-172 | 483 |
| MsG0580025602.01.T01 | AT4G37990 | 72.000 | 350 | 98 | 0 | 11 | 360 | 7 | 356 | 1.33e-170 | 479 |
| MsG0580025602.01.T01 | AT4G39330 | 62.745 | 357 | 133 | 0 | 1 | 357 | 1 | 357 | 5.98e-167 | 470 |
| MsG0580025602.01.T01 | AT2G21730 | 61.190 | 353 | 135 | 2 | 7 | 357 | 1 | 353 | 1.59e-156 | 444 |
| MsG0580025602.01.T01 | AT2G21890 | 60.227 | 352 | 139 | 1 | 7 | 357 | 1 | 352 | 7.61e-155 | 440 |
| MsG0580025602.01.T01 | AT4G39330 | 61.812 | 309 | 118 | 0 | 1 | 309 | 1 | 309 | 6.70e-137 | 392 |
| MsG0580025602.01.T01 | AT4G37980 | 72.535 | 284 | 78 | 0 | 11 | 294 | 7 | 290 | 3.26e-134 | 385 |
| MsG0580025602.01.T01 | AT4G37970 | 65.398 | 289 | 100 | 0 | 6 | 294 | 7 | 295 | 6.66e-133 | 382 |
| MsG0580025602.01.T01 | AT3G19450 | 53.757 | 346 | 160 | 0 | 11 | 356 | 9 | 354 | 7.03e-118 | 346 |
| MsG0580025602.01.T01 | AT1G72680 | 48.324 | 358 | 182 | 2 | 1 | 358 | 1 | 355 | 3.33e-113 | 333 |
| MsG0580025602.01.T01 | AT4G34230 | 53.107 | 354 | 165 | 1 | 7 | 359 | 4 | 357 | 2.67e-109 | 324 |
| MsG0580025602.01.T01 | AT4G34230 | 52.825 | 354 | 166 | 1 | 7 | 359 | 4 | 357 | 2.59e-108 | 321 |
| MsG0580025602.01.T01 | AT4G37970 | 64.979 | 237 | 83 | 0 | 6 | 242 | 7 | 243 | 2.48e-105 | 310 |
| MsG0580025602.01.T01 | AT4G37970 | 64.979 | 237 | 83 | 0 | 6 | 242 | 7 | 243 | 2.95e-105 | 310 |
| MsG0580025602.01.T01 | AT5G63620 | 27.241 | 290 | 183 | 6 | 15 | 278 | 58 | 345 | 1.98e-25 | 106 |
| MsG0580025602.01.T01 | AT5G63620 | 27.241 | 290 | 183 | 6 | 15 | 278 | 58 | 345 | 2.50e-25 | 106 |
| MsG0580025602.01.T01 | AT5G63620 | 28.287 | 251 | 157 | 5 | 15 | 244 | 58 | 306 | 3.39e-24 | 101 |
| MsG0580025602.01.T01 | AT5G51970 | 26.449 | 276 | 180 | 8 | 15 | 278 | 21 | 285 | 3.54e-16 | 79.3 |
| MsG0580025602.01.T01 | AT5G51970 | 26.449 | 276 | 180 | 8 | 15 | 278 | 21 | 285 | 3.54e-16 | 79.3 |
| MsG0580025602.01.T01 | AT1G64710 | 24.516 | 310 | 199 | 10 | 39 | 318 | 13 | 317 | 1.07e-15 | 77.8 |
| MsG0580025602.01.T01 | AT1G64710 | 24.516 | 310 | 199 | 10 | 39 | 318 | 36 | 340 | 1.19e-15 | 77.8 |
| MsG0580025602.01.T01 | AT5G43940 | 24.183 | 306 | 204 | 7 | 39 | 319 | 48 | 350 | 1.27e-15 | 77.8 |
| MsG0580025602.01.T01 | AT5G43940 | 24.183 | 306 | 204 | 7 | 39 | 319 | 36 | 338 | 1.39e-15 | 77.8 |
| MsG0580025602.01.T01 | AT1G77120 | 23.055 | 347 | 232 | 12 | 39 | 354 | 36 | 378 | 2.82e-15 | 76.6 |
| MsG0580025602.01.T01 | AT1G32780 | 25.275 | 364 | 221 | 15 | 39 | 358 | 37 | 393 | 8.39e-13 | 69.3 |
Find 117 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATAATAACTTGTGAATTT+TGG | 0.172871 | 5:-21112049 | MsG0580025602.01.T01:five_prime_UTR |
| TATAGCCCTATGAAACATTT+TGG | 0.212281 | 5:-21110764 | MsG0580025602.01.T01:CDS |
| CTTGGTCTATTGAAGAATAA+TGG | 0.272969 | 5:-21110361 | MsG0580025602.01.T01:CDS |
| CGCCAAAGCCTTTGGGGTTA+AGG | 0.276300 | 5:-21110672 | MsG0580025602.01.T01:CDS |
| TCAAGTCCAAAATGTTTCAT+AGG | 0.278051 | 5:+21110758 | None:intergenic |
| GCCGATGAGTATTTAAGATT+TGG | 0.287790 | 5:-21109766 | MsG0580025602.01.T01:three_prime_UTR |
| TGAAGTTCGCCAAAGCCTTT+GGG | 0.299698 | 5:-21110679 | MsG0580025602.01.T01:CDS |
| GTTGTTGGTCTTGGTGGATT+AGG | 0.305881 | 5:-21110713 | MsG0580025602.01.T01:CDS |
| GTGAAGTTCGCCAAAGCCTT+TGG | 0.307536 | 5:-21110680 | MsG0580025602.01.T01:CDS |
| CAAGCTCTTAAATAACTAGA+AGG | 0.317570 | 5:-21109991 | MsG0580025602.01.T01:exon |
| GTGATAAGGCATCAGGAATA+TGG | 0.344459 | 5:+21110828 | None:intergenic |
| CTCCTTTCAAGTTCTCTAGA+AGG | 0.347990 | 5:-21111904 | MsG0580025602.01.T01:intron |
| TATCATACGTGCTACTTTCA+TGG | 0.349977 | 5:+21112100 | None:intergenic |
| GTTGGTGTGGGGTGCATGGT+TGG | 0.355897 | 5:-21110998 | MsG0580025602.01.T01:CDS |
| TACCTTAACCCCAAAGGCTT+TGG | 0.358168 | 5:+21110670 | None:intergenic |
| GCTGCTCCTCTCCTTTGTGC+TGG | 0.359169 | 5:-21110797 | MsG0580025602.01.T01:CDS |
| GCTGTAATGGGCACGTTTGA+TGG | 0.372955 | 5:-21110427 | MsG0580025602.01.T01:CDS |
| GGAAACTCCAAAGGCTTCTC+TGG | 0.377400 | 5:+21110316 | None:intergenic |
| CACATAGGTGTTGTTGGTCT+TGG | 0.390395 | 5:-21110722 | MsG0580025602.01.T01:CDS |
| CCCACAATCAAAGAAAATAC+TGG | 0.392755 | 5:+21110295 | None:intergenic |
| CAATATGTTATAGGCTGTAA+TGG | 0.393588 | 5:-21110440 | MsG0580025602.01.T01:intron |
| ACTTTATCTTGCAATTGAAA+TGG | 0.394504 | 5:-21111999 | MsG0580025602.01.T01:exon |
| TGAAAGTAGCACGTATGATA+TGG | 0.395116 | 5:-21112097 | MsG0580025602.01.T01:five_prime_UTR |
| GAATAATGGTAAACTTGTTA+TGG | 0.398732 | 5:-21110347 | MsG0580025602.01.T01:CDS |
| GATAGTGCCATCAACATTCT+TGG | 0.402024 | 5:+21110901 | None:intergenic |
| CAGGGTTGGTGTGGGGTGCA+TGG | 0.404978 | 5:-21111002 | MsG0580025602.01.T01:CDS |
| ACTGGAACAACCTCAATATC+AGG | 0.408861 | 5:+21110100 | None:intergenic |
| AGACCAAGCAAAGGCATTAG+AGG | 0.414126 | 5:+21110376 | None:intergenic |
| ACTACTTACCCAGTAGTTCC+TGG | 0.414223 | 5:-21111203 | MsG0580025602.01.T01:CDS |
| ATAGGTGTTGTTGGTCTTGG+TGG | 0.418861 | 5:-21110719 | MsG0580025602.01.T01:CDS |
| ACAATTGGTGGGAGTATGAT+TGG | 0.420703 | 5:-21110178 | MsG0580025602.01.T01:CDS |
| TATTGGTACGCACCTTCATC+TGG | 0.421150 | 5:+21110561 | None:intergenic |
| TCTTGGTGGATTAGGTCATA+TGG | 0.422443 | 5:-21110705 | MsG0580025602.01.T01:CDS |
| AATGGCCTCAAAACCAGAAA+TGG | 0.429229 | 5:-21111981 | MsG0580025602.01.T01:CDS |
| TACAGTTCCAAGAATGTTGA+TGG | 0.430392 | 5:-21110908 | MsG0580025602.01.T01:CDS |
| CTGCTCCTCTCCTTTGTGCT+GGG | 0.434632 | 5:-21110796 | MsG0580025602.01.T01:CDS |
| TATCGATTTGTTATTGACAT+TGG | 0.438397 | 5:-21110028 | MsG0580025602.01.T01:CDS |
| GTGAAAGGATGTTAATCAAA+TGG | 0.438965 | 5:+21112020 | None:intergenic |
| CGCCACAACTTTGACATGAA+TGG | 0.444538 | 5:+21110969 | None:intergenic |
| CATCCTCTAATGCCTTTGCT+TGG | 0.446345 | 5:-21110379 | MsG0580025602.01.T01:CDS |
| AATATGTTATAGGCTGTAAT+GGG | 0.447072 | 5:-21110439 | MsG0580025602.01.T01:intron |
| AGTCAGCTCCTAAGTGTTCA+AGG | 0.448826 | 5:+21110609 | None:intergenic |
| TGGAGCTCCAGAGAAGCCTT+TGG | 0.454095 | 5:-21110323 | MsG0580025602.01.T01:CDS |
| TTAGAGTACCCAGGAACTAC+TGG | 0.455836 | 5:+21111194 | None:intergenic |
| AAAACTTCAAAATTGGAGAC+AGG | 0.457788 | 5:-21111021 | MsG0580025602.01.T01:CDS |
| TGTTGAAGACATGAAGTTGC+TGG | 0.463326 | 5:-21111073 | MsG0580025602.01.T01:intron |
| AATGGTAAACTTGTTATGGT+TGG | 0.469139 | 5:-21110343 | MsG0580025602.01.T01:CDS |
| GGACTGCACATAGGTGTTGT+TGG | 0.478905 | 5:-21110728 | MsG0580025602.01.T01:CDS |
| AAGCTTTCGGATGGGCAGCT+AGG | 0.490753 | 5:-21111946 | MsG0580025602.01.T01:CDS |
| GCATCAAGTGATAAGGCATC+AGG | 0.495160 | 5:+21110821 | None:intergenic |
| AATTGGAGACAGGGTTGGTG+TGG | 0.496167 | 5:-21111011 | MsG0580025602.01.T01:CDS |
| AGCTTTCGGATGGGCAGCTA+GGG | 0.501441 | 5:-21111945 | MsG0580025602.01.T01:CDS |
| CAAGTCCAAAATGTTTCATA+GGG | 0.502873 | 5:+21110759 | None:intergenic |
| TGGGCAGCTAGGGACACATC+TGG | 0.503109 | 5:-21111935 | MsG0580025602.01.T01:CDS |
| GAGTATGATTGGAGGGATGA+AGG | 0.509991 | 5:-21110167 | MsG0580025602.01.T01:CDS |
| TTTCAGGGAAACAGGGGAGA+AGG | 0.511637 | 5:-21111300 | MsG0580025602.01.T01:intron |
| ATCATACGTGCTACTTTCAT+GGG | 0.513433 | 5:+21112101 | None:intergenic |
| GTTGATGGCACTATCACCTA+TGG | 0.515552 | 5:-21110893 | MsG0580025602.01.T01:CDS |
| GGAAACAGGGGAGAAGGATG+TGG | 0.515934 | 5:-21111294 | MsG0580025602.01.T01:CDS |
| AGCAGCGGCATCAAGTGATA+AGG | 0.524931 | 5:+21110814 | None:intergenic |
| TAGAGAACTTGAAAGGAGAA+AGG | 0.526536 | 5:+21111909 | None:intergenic |
| TTCAAAATTGGAGACAGGGT+TGG | 0.531023 | 5:-21111016 | MsG0580025602.01.T01:CDS |
| TGCCATTCATGTCAAAGTTG+TGG | 0.533789 | 5:-21110971 | MsG0580025602.01.T01:CDS |
| AAGCTCTTAAATAACTAGAA+GGG | 0.539770 | 5:-21109990 | MsG0580025602.01.T01:exon |
| TTGGCAGGGAGAAAGACAAT+TGG | 0.543249 | 5:-21110193 | MsG0580025602.01.T01:intron |
| ATTGGAGACAGGGTTGGTGT+GGG | 0.544734 | 5:-21111010 | MsG0580025602.01.T01:CDS |
| GCAGGGAGAAAGACAATTGG+TGG | 0.544871 | 5:-21110190 | MsG0580025602.01.T01:intron |
| TGACATTGGAAACACAATGA+AGG | 0.546508 | 5:-21110014 | MsG0580025602.01.T01:CDS |
| TAGAGGATGGAGTGCTGAAA+CGG | 0.546944 | 5:+21110393 | None:intergenic |
| GTTATTATAATAAGAGTATG+TGG | 0.550223 | 5:+21112062 | None:intergenic |
| TGATATTGAGGTTGTTCCAG+TGG | 0.550536 | 5:-21110098 | MsG0580025602.01.T01:CDS |
| GCAGTATTTACATAATCCAC+TGG | 0.550557 | 5:+21110082 | None:intergenic |
| AGGATGTTAATCAAATGGTA+AGG | 0.552191 | 5:+21112025 | None:intergenic |
| CTTAGGAGCTGACTCATTCG+TGG | 0.554856 | 5:-21110600 | MsG0580025602.01.T01:CDS |
| AAGGAAGCCCTTGAACACTT+AGG | 0.559865 | 5:-21110617 | MsG0580025602.01.T01:CDS |
| ACAACACCTATGTGCAGTCC+AGG | 0.560025 | 5:+21110731 | None:intergenic |
| AGCACAAAGGAGAGGAGCAG+CGG | 0.561956 | 5:+21110799 | None:intergenic |
| CACAGTTACCTTAACCCCAA+AGG | 0.563973 | 5:+21110664 | None:intergenic |
| GCCAAATCTTAAATACTCAT+CGG | 0.567310 | 5:+21109765 | None:intergenic |
| TGGCGTAAAACCTGATATTG+AGG | 0.570134 | 5:-21110110 | MsG0580025602.01.T01:CDS |
| CAATTGCAAGATAAAGTGAA+AGG | 0.573613 | 5:+21112005 | None:intergenic |
| TGCTACTTTCATGGGTGAGT+GGG | 0.575741 | 5:+21112109 | None:intergenic |
| CAAGCAAAGGCATTAGAGGA+TGG | 0.578766 | 5:+21110380 | None:intergenic |
| GAAAATACTGGAAACTCCAA+AGG | 0.580584 | 5:+21110307 | None:intergenic |
| CTACTTACCCAGTAGTTCCT+GGG | 0.589206 | 5:-21111202 | MsG0580025602.01.T01:intron |
| TTGGTGGGAGTATGATTGGA+GGG | 0.589557 | 5:-21110174 | MsG0580025602.01.T01:CDS |
| ATTGGTGGGAGTATGATTGG+AGG | 0.590145 | 5:-21110175 | MsG0580025602.01.T01:CDS |
| TCACATGGCTAAGAATGAGT+GGG | 0.592665 | 5:-21111231 | MsG0580025602.01.T01:CDS |
| AGTGACAGAGGTGGGAAGCA+AGG | 0.592868 | 5:-21111047 | MsG0580025602.01.T01:CDS |
| TACCTTCTAGAGAACTTGAA+AGG | 0.593400 | 5:+21111902 | None:intergenic |
| AAACTTCAAAATTGGAGACA+GGG | 0.597248 | 5:-21111020 | MsG0580025602.01.T01:CDS |
| GTGCTACTTTCATGGGTGAG+TGG | 0.603972 | 5:+21112108 | None:intergenic |
| TTCACATGGCTAAGAATGAG+TGG | 0.604893 | 5:-21111232 | MsG0580025602.01.T01:CDS |
| ATGTGTTCTTTCTCAACGAG+AGG | 0.606129 | 5:+21109818 | None:intergenic |
| GGTGTCAGAGTAGCCTCCAT+AGG | 0.609083 | 5:+21110877 | None:intergenic |
| GGATTATGTAAATACTGCAA+TGG | 0.611722 | 5:-21110077 | MsG0580025602.01.T01:CDS |
| GAAGTTCGCCAAAGCCTTTG+GGG | 0.621609 | 5:-21110678 | MsG0580025602.01.T01:CDS |
| TAGAGTACCCAGGAACTACT+GGG | 0.622352 | 5:+21111195 | None:intergenic |
| TTCTTCAATAGACCAAGCAA+AGG | 0.622643 | 5:+21110367 | None:intergenic |
| GACAAACCTGGACTGCACAT+AGG | 0.623406 | 5:-21110737 | MsG0580025602.01.T01:CDS |
| GTCAGCTCCTAAGTGTTCAA+GGG | 0.623420 | 5:+21110610 | None:intergenic |
| ACTCATTCTTAGCCATGTGA+AGG | 0.631347 | 5:+21111234 | None:intergenic |
| TCGCGAACAAGACCAGATGA+AGG | 0.635463 | 5:-21110573 | MsG0580025602.01.T01:intron |
| TTGGAGACAGGGTTGGTGTG+GGG | 0.642743 | 5:-21111009 | MsG0580025602.01.T01:CDS |
| GCTGGTGAAGTGACAGAGGT+GGG | 0.643936 | 5:-21111055 | MsG0580025602.01.T01:CDS |
| ATGTCACTCGGACCTTCACA+TGG | 0.644647 | 5:-21111246 | MsG0580025602.01.T01:CDS |
| CAGGGAGAAAGACAATTGGT+GGG | 0.647955 | 5:-21110189 | MsG0580025602.01.T01:CDS |
| GTGATCCCAGCACAAAGGAG+AGG | 0.651936 | 5:+21110791 | None:intergenic |
| CTTTGGGGTTAAGGTAACTG+TGG | 0.655334 | 5:-21110663 | MsG0580025602.01.T01:CDS |
| TGCTGGTGAAGTGACAGAGG+TGG | 0.668343 | 5:-21111056 | MsG0580025602.01.T01:CDS |
| TTCATGTCAAAGTTGTGGCG+AGG | 0.670954 | 5:-21110966 | MsG0580025602.01.T01:CDS |
| TGGAGGCTACTCTGACACCA+TGG | 0.673114 | 5:-21110873 | MsG0580025602.01.T01:CDS |
| CACATGGCTAAGAATGAGTG+GGG | 0.673842 | 5:-21111230 | MsG0580025602.01.T01:CDS |
| GATGGCACTATCACCTATGG+AGG | 0.687126 | 5:-21110890 | MsG0580025602.01.T01:CDS |
| AAAGTGTTCGTCGACAACCA+TGG | 0.696527 | 5:+21110856 | None:intergenic |
| ACACTGTGATCCCAGCACAA+AGG | 0.700831 | 5:+21110786 | None:intergenic |
| AGTTGCTGGTGAAGTGACAG+AGG | 0.727660 | 5:-21111059 | MsG0580025602.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATCTATAAAAAAAAAAATC+AGG | + | Chr5:21110362-21110381 | None:intergenic | 10.0% |
| !! | TTACTATATAGAAATAAATT+TGG | + | Chr5:21111386-21111405 | None:intergenic | 10.0% |
| !!! | ATTCATTTTTGTTTATTTTT+TGG | - | Chr5:21111959-21111978 | MsG0580025602.01.T01:CDS | 10.0% |
| !!! | TTCATTTTTGTTTATTTTTT+GGG | - | Chr5:21111960-21111979 | MsG0580025602.01.T01:CDS | 10.0% |
| !! | AATGTTATTCAATATGTTAT+AGG | - | Chr5:21111445-21111464 | MsG0580025602.01.T01:intron | 15.0% |
| !! | GTTGAAAATTAAATAAACAA+TGG | + | Chr5:21110740-21110759 | None:intergenic | 15.0% |
| !! | TGTGTTATATTAAAATATGA+AGG | - | Chr5:21111651-21111670 | MsG0580025602.01.T01:intron | 15.0% |
| !! | TTGAATAACATTAGAATTAA+AGG | + | Chr5:21111437-21111456 | None:intergenic | 15.0% |
| !!! | AAATTAGTTTGTTTTTATGA+CGG | + | Chr5:21110778-21110797 | None:intergenic | 15.0% |
| !!! | GACATATGATTTATTTTAAT+TGG | - | Chr5:21110425-21110444 | MsG0580025602.01.T01:CDS | 15.0% |
| !!! | TTATAATAACTTGTGAATTT+TGG | - | Chr5:21109845-21109864 | MsG0580025602.01.T01:three_prime_UTR | 15.0% |
| !! | AAAACATCTCATAAATGATA+GGG | - | Chr5:21110181-21110200 | MsG0580025602.01.T01:CDS | 20.0% |
| !! | AAGTTAAAAGATTTAAAGAC+AGG | - | Chr5:21110255-21110274 | MsG0580025602.01.T01:intron | 20.0% |
| !! | AGTTAAAAGATTTAAAGACA+GGG | - | Chr5:21110256-21110275 | MsG0580025602.01.T01:intron | 20.0% |
| !! | TATTACATCACATTAATTGT+TGG | - | Chr5:21111682-21111701 | MsG0580025602.01.T01:intron | 20.0% |
| !! | TTATAATAACAATTTCACCA+AGG | + | Chr5:21110043-21110062 | None:intergenic | 20.0% |
| !!! | AATATTTTTCATTCCTTTTC+AGG | - | Chr5:21110578-21110597 | MsG0580025602.01.T01:CDS | 20.0% |
| !!! | ATATTTTTCATTCCTTTTCA+GGG | - | Chr5:21110579-21110598 | MsG0580025602.01.T01:CDS | 20.0% |
| !!! | ATTTTTGTTTATTTTTTGGG+AGG | - | Chr5:21111963-21111982 | MsG0580025602.01.T01:CDS | 20.0% |
| !!! | GTTATTATAATAAGAGTATG+TGG | + | Chr5:21109835-21109854 | None:intergenic | 20.0% |
| !!! | TTTTTGTTTATTTTTTGGGA+GGG | - | Chr5:21111964-21111983 | MsG0580025602.01.T01:CDS | 20.0% |
| ! | AAGCTCTTAAATAACTAGAA+GGG | - | Chr5:21111904-21111923 | MsG0580025602.01.T01:intron | 25.0% |
| ! | AAGGTGAAAAACTTCAAAAT+TGG | - | Chr5:21110866-21110885 | MsG0580025602.01.T01:CDS | 25.0% |
| ! | AATATGTTATAGGCTGTAAT+GGG | - | Chr5:21111455-21111474 | MsG0580025602.01.T01:intron | 25.0% |
| ! | ACTCATTAAAAGCGAATTAT+TGG | + | Chr5:21111353-21111372 | None:intergenic | 25.0% |
| ! | ACTTTATCTTGCAATTGAAA+TGG | - | Chr5:21109895-21109914 | MsG0580025602.01.T01:three_prime_UTR | 25.0% |
| ! | CAACTTGATTGACATTAAAA+GGG | + | Chr5:21110105-21110124 | None:intergenic | 25.0% |
| ! | GAAAACATCTCATAAATGAT+AGG | - | Chr5:21110180-21110199 | MsG0580025602.01.T01:CDS | 25.0% |
| !! | TATAGTAATCGATTTATCGA+TGG | - | Chr5:21111398-21111417 | MsG0580025602.01.T01:intron | 25.0% |
| !!! | GAATAATGGTAAACTTGTTA+TGG | - | Chr5:21111547-21111566 | MsG0580025602.01.T01:intron | 25.0% |
| !!! | TATCGATTTGTTATTGACAT+TGG | - | Chr5:21111866-21111885 | MsG0580025602.01.T01:intron | 25.0% |
| AAAACTTCAAAATTGGAGAC+AGG | - | Chr5:21110873-21110892 | MsG0580025602.01.T01:CDS | 30.0% | |
| AAACTTCAAAATTGGAGACA+GGG | - | Chr5:21110874-21110893 | MsG0580025602.01.T01:CDS | 30.0% | |
| AGGATGTTAATCAAATGGTA+AGG | + | Chr5:21109872-21109891 | None:intergenic | 30.0% | |
| CAAGCTCTTAAATAACTAGA+AGG | - | Chr5:21111903-21111922 | MsG0580025602.01.T01:intron | 30.0% | |
| CAAGTCCAAAATGTTTCATA+GGG | + | Chr5:21111138-21111157 | None:intergenic | 30.0% | |
| CAATATGTTATAGGCTGTAA+TGG | - | Chr5:21111454-21111473 | MsG0580025602.01.T01:intron | 30.0% | |
| CAATTGCAAGATAAAGTGAA+AGG | + | Chr5:21109892-21109911 | None:intergenic | 30.0% | |
| CCAACTTGATTGACATTAAA+AGG | + | Chr5:21110106-21110125 | None:intergenic | 30.0% | |
| CTTGGTCTATTGAAGAATAA+TGG | - | Chr5:21111533-21111552 | MsG0580025602.01.T01:intron | 30.0% | |
| GCCAAATCTTAAATACTCAT+CGG | + | Chr5:21112132-21112151 | None:intergenic | 30.0% | |
| GGATTATGTAAATACTGCAA+TGG | - | Chr5:21111817-21111836 | MsG0580025602.01.T01:intron | 30.0% | |
| GTGAAAGGATGTTAATCAAA+TGG | + | Chr5:21109877-21109896 | None:intergenic | 30.0% | |
| TACTTCTCCTAACAAAAAGA+AGG | - | Chr5:21111258-21111277 | MsG0580025602.01.T01:CDS | 30.0% | |
| TCAAGTCCAAAATGTTTCAT+AGG | + | Chr5:21111139-21111158 | None:intergenic | 30.0% | |
| ! | CCAGTATTTTCTTTGATTGT+GGG | - | Chr5:21111599-21111618 | MsG0580025602.01.T01:intron | 30.0% |
| ! | CCTTTTAATGTCAATCAAGT+TGG | - | Chr5:21110103-21110122 | MsG0580025602.01.T01:CDS | 30.0% |
| ! | TATAGCCCTATGAAACATTT+TGG | - | Chr5:21111130-21111149 | MsG0580025602.01.T01:intron | 30.0% |
| ! | TCCAGTATTTTCTTTGATTG+TGG | - | Chr5:21111598-21111617 | MsG0580025602.01.T01:intron | 30.0% |
| !! | AATGGTAAACTTGTTATGGT+TGG | - | Chr5:21111551-21111570 | MsG0580025602.01.T01:intron | 30.0% |
| !! | GCATTCAAAGTACTATTTTG+CGG | - | Chr5:21110622-21110641 | MsG0580025602.01.T01:CDS | 30.0% |
| !!! | ATTTTAATTGGCTCCTTGTA+TGG | - | Chr5:21110437-21110456 | MsG0580025602.01.T01:intron | 30.0% |
| !!! | CAATCAAGTTGGTTTTCAAT+TGG | - | Chr5:21110114-21110133 | MsG0580025602.01.T01:CDS | 30.0% |
| ACATCACATTAATTGTTGGC+AGG | - | Chr5:21111686-21111705 | MsG0580025602.01.T01:intron | 35.0% | |
| ACTGGATCATCTCTAATGAA+CGG | - | Chr5:21110204-21110223 | MsG0580025602.01.T01:intron | 35.0% | |
| ATCTCATAAATGATAGGGAC+TGG | - | Chr5:21110186-21110205 | MsG0580025602.01.T01:CDS | 35.0% | |
| CATCACATTAATTGTTGGCA+GGG | - | Chr5:21111687-21111706 | MsG0580025602.01.T01:intron | 35.0% | |
| CCCACAATCAAAGAAAATAC+TGG | + | Chr5:21111602-21111621 | None:intergenic | 35.0% | |
| GAAAATACTGGAAACTCCAA+AGG | + | Chr5:21111590-21111609 | None:intergenic | 35.0% | |
| GCAGTATTTACATAATCCAC+TGG | + | Chr5:21111815-21111834 | None:intergenic | 35.0% | |
| TACAGTTCCAAGAATGTTGA+TGG | - | Chr5:21110986-21111005 | MsG0580025602.01.T01:CDS | 35.0% | |
| TACATCACACATCAACATTC+AGG | + | Chr5:21110335-21110354 | None:intergenic | 35.0% | |
| TAGAGAACTTGAAAGGAGAA+AGG | + | Chr5:21109988-21110007 | None:intergenic | 35.0% | |
| TGAAAGTAGCACGTATGATA+TGG | - | Chr5:21109797-21109816 | MsG0580025602.01.T01:three_prime_UTR | 35.0% | |
| TGACATTGGAAACACAATGA+AGG | - | Chr5:21111880-21111899 | MsG0580025602.01.T01:intron | 35.0% | |
| TTCTTCAATAGACCAAGCAA+AGG | + | Chr5:21111530-21111549 | None:intergenic | 35.0% | |
| ! | ATTTTGCGGTATATGTCACT+CGG | - | Chr5:21110636-21110655 | MsG0580025602.01.T01:CDS | 35.0% |
| ! | GCCGATGAGTATTTAAGATT+TGG | - | Chr5:21112128-21112147 | MsG0580025602.01.T01:five_prime_UTR | 35.0% |
| ! | TACCTTCTAGAGAACTTGAA+AGG | + | Chr5:21109995-21110014 | None:intergenic | 35.0% |
| ! | TCTCTTATGTTTTCTCAAGC+TGG | + | Chr5:21110292-21110311 | None:intergenic | 35.0% |
| !! | ATCATACGTGCTACTTTCAT+GGG | + | Chr5:21109796-21109815 | None:intergenic | 35.0% |
| !! | ATTGATTTTGCAGCCAAACA+TGG | - | Chr5:21111764-21111783 | MsG0580025602.01.T01:intron | 35.0% |
| !! | TATCATACGTGCTACTTTCA+TGG | + | Chr5:21109797-21109816 | None:intergenic | 35.0% |
| AATGGCCTCAAAACCAGAAA+TGG | - | Chr5:21109913-21109932 | MsG0580025602.01.T01:three_prime_UTR | 40.0% | |
| ACTCATTCTTAGCCATGTGA+AGG | + | Chr5:21110663-21110682 | None:intergenic | 40.0% | |
| ACTGGAACAACCTCAATATC+AGG | + | Chr5:21111797-21111816 | None:intergenic | 40.0% | |
| AGGATGCATGAATACATGAG+TGG | + | Chr5:21110023-21110042 | None:intergenic | 40.0% | |
| ATCCCAAAAAAGCTTTCGGA+TGG | - | Chr5:21109939-21109958 | MsG0580025602.01.T01:three_prime_UTR | 40.0% | |
| ATGTGTTCTTTCTCAACGAG+AGG | + | Chr5:21112079-21112098 | None:intergenic | 40.0% | |
| CTCATGTATTCATGCATCCT+TGG | - | Chr5:21110023-21110042 | MsG0580025602.01.T01:CDS | 40.0% | |
| GAGCATCCCAAAAAAGCTTT+CGG | - | Chr5:21109935-21109954 | MsG0580025602.01.T01:three_prime_UTR | 40.0% | |
| GATAGTGCCATCAACATTCT+TGG | + | Chr5:21110996-21111015 | None:intergenic | 40.0% | |
| TCACATGGCTAAGAATGAGT+GGG | - | Chr5:21110663-21110682 | MsG0580025602.01.T01:CDS | 40.0% | |
| TCCCAAAAAAGCTTTCGGAT+GGG | - | Chr5:21109940-21109959 | MsG0580025602.01.T01:three_prime_UTR | 40.0% | |
| TGATATTGAGGTTGTTCCAG+TGG | - | Chr5:21111796-21111815 | MsG0580025602.01.T01:intron | 40.0% | |
| TGCCATTCATGTCAAAGTTG+TGG | - | Chr5:21110923-21110942 | MsG0580025602.01.T01:CDS | 40.0% | |
| TGGCGTAAAACCTGATATTG+AGG | - | Chr5:21111784-21111803 | MsG0580025602.01.T01:intron | 40.0% | |
| TGTTGAAGACATGAAGTTGC+TGG | - | Chr5:21110821-21110840 | MsG0580025602.01.T01:CDS | 40.0% | |
| TTCAAAATTGGAGACAGGGT+TGG | - | Chr5:21110878-21110897 | MsG0580025602.01.T01:CDS | 40.0% | |
| TTCACATGGCTAAGAATGAG+TGG | - | Chr5:21110662-21110681 | MsG0580025602.01.T01:CDS | 40.0% | |
| TTGACATTAAAAGGGACGCA+AGG | + | Chr5:21110097-21110116 | None:intergenic | 40.0% | |
| ! | ACAATTGGTGGGAGTATGAT+TGG | - | Chr5:21111716-21111735 | MsG0580025602.01.T01:intron | 40.0% |
| ! | AGGGCTTCCTTCTTTTTGTT+AGG | + | Chr5:21111268-21111287 | None:intergenic | 40.0% |
| ! | ATCAGGTTTTACGCCATGTT+TGG | + | Chr5:21111780-21111799 | None:intergenic | 40.0% |
| ! | CATTTTGGACTTGACAAACC+TGG | - | Chr5:21111145-21111164 | MsG0580025602.01.T01:intron | 40.0% |
| ! | GTGATAAGGCATCAGGAATA+TGG | + | Chr5:21111069-21111088 | None:intergenic | 40.0% |
| ! | TTTGTGATGTTAGAGTACCC+AGG | + | Chr5:21110712-21110731 | None:intergenic | 40.0% |
| !! | ATTCCTTTTCAGGGAAACAG+GGG | - | Chr5:21110588-21110607 | MsG0580025602.01.T01:CDS | 40.0% |
| !! | CATTCCTTTTCAGGGAAACA+GGG | - | Chr5:21110587-21110606 | MsG0580025602.01.T01:CDS | 40.0% |
| !! | CTCCTTTCAAGTTCTCTAGA+AGG | - | Chr5:21109990-21110009 | MsG0580025602.01.T01:exon | 40.0% |
| !! | TCATTCCTTTTCAGGGAAAC+AGG | - | Chr5:21110586-21110605 | MsG0580025602.01.T01:CDS | 40.0% |
| !! | TCTTGGTGGATTAGGTCATA+TGG | - | Chr5:21111189-21111208 | MsG0580025602.01.T01:intron | 40.0% |
| !!! | ATGCTCCATTTCTGGTTTTG+AGG | + | Chr5:21109921-21109940 | None:intergenic | 40.0% |
| !!! | TGAGTGGGTGACTTTTTCAA+TGG | + | Chr5:21109773-21109792 | None:intergenic | 40.0% |
| !!! | TTTTTGGGATGCTCCATTTC+TGG | + | Chr5:21109929-21109948 | None:intergenic | 40.0% |
| AAGGAAGCCCTTGAACACTT+AGG | - | Chr5:21111277-21111296 | MsG0580025602.01.T01:CDS | 45.0% | |
| ACTACTTACCCAGTAGTTCC+TGG | - | Chr5:21110691-21110710 | MsG0580025602.01.T01:CDS | 45.0% | |
| AGTCAGCTCCTAAGTGTTCA+AGG | + | Chr5:21111288-21111307 | None:intergenic | 45.0% | |
| CACAGTTACCTTAACCCCAA+AGG | + | Chr5:21111233-21111252 | None:intergenic | 45.0% | |
| CACATGGCTAAGAATGAGTG+GGG | - | Chr5:21110664-21110683 | MsG0580025602.01.T01:CDS | 45.0% | |
| CAGGGAGAAAGACAATTGGT+GGG | - | Chr5:21111705-21111724 | MsG0580025602.01.T01:intron | 45.0% | |
| CATCCTCTAATGCCTTTGCT+TGG | - | Chr5:21111515-21111534 | MsG0580025602.01.T01:intron | 45.0% | |
| CGCCACAACTTTGACATGAA+TGG | + | Chr5:21110928-21110947 | None:intergenic | 45.0% | |
| CTACTTACCCAGTAGTTCCT+GGG | - | Chr5:21110692-21110711 | MsG0580025602.01.T01:CDS | 45.0% | |
| GAGTATGATTGGAGGGATGA+AGG | - | Chr5:21111727-21111746 | MsG0580025602.01.T01:intron | 45.0% | |
| GTCAGCTCCTAAGTGTTCAA+GGG | + | Chr5:21111287-21111306 | None:intergenic | 45.0% | |
| TACCTTAACCCCAAAGGCTT+TGG | + | Chr5:21111227-21111246 | None:intergenic | 45.0% | |
| TATTGGTACGCACCTTCATC+TGG | + | Chr5:21111336-21111355 | None:intergenic | 45.0% | |
| TGAAGTTCGCCAAAGCCTTT+GGG | - | Chr5:21111215-21111234 | MsG0580025602.01.T01:CDS | 45.0% | |
| TGGCTCCTTGTATGGTAAGA+GGG | - | Chr5:21110445-21110464 | MsG0580025602.01.T01:intron | 45.0% | |
| TTCATGTCAAAGTTGTGGCG+AGG | - | Chr5:21110928-21110947 | MsG0580025602.01.T01:CDS | 45.0% | |
| TTGGCAGGGAGAAAGACAAT+TGG | - | Chr5:21111701-21111720 | MsG0580025602.01.T01:intron | 45.0% | |
| TTGGCTCCTTGTATGGTAAG+AGG | - | Chr5:21110444-21110463 | MsG0580025602.01.T01:intron | 45.0% | |
| ! | AAAGTGTTCGTCGACAACCA+TGG | + | Chr5:21111041-21111060 | None:intergenic | 45.0% |
| ! | ATTGGTGGGAGTATGATTGG+AGG | - | Chr5:21111719-21111738 | MsG0580025602.01.T01:intron | 45.0% |
| ! | GCATCAAGTGATAAGGCATC+AGG | + | Chr5:21111076-21111095 | None:intergenic | 45.0% |
| ! | TAGAGTACCCAGGAACTACT+GGG | + | Chr5:21110702-21110721 | None:intergenic | 45.0% |
| ! | TTAGAGTACCCAGGAACTAC+TGG | + | Chr5:21110703-21110722 | None:intergenic | 45.0% |
| ! | TTGGTGGGAGTATGATTGGA+GGG | - | Chr5:21111720-21111739 | MsG0580025602.01.T01:intron | 45.0% |
| !! | AGACCAAGCAAAGGCATTAG+AGG | + | Chr5:21111521-21111540 | None:intergenic | 45.0% |
| !! | ATAGGTGTTGTTGGTCTTGG+TGG | - | Chr5:21111175-21111194 | MsG0580025602.01.T01:intron | 45.0% |
| !! | CAAGCAAAGGCATTAGAGGA+TGG | + | Chr5:21111517-21111536 | None:intergenic | 45.0% |
| !! | CACATAGGTGTTGTTGGTCT+TGG | - | Chr5:21111172-21111191 | MsG0580025602.01.T01:intron | 45.0% |
| !! | CGGAGAGTGCTGTGAAATTT+AGG | - | Chr5:21110224-21110243 | MsG0580025602.01.T01:intron | 45.0% |
| !! | CTTTGGGGTTAAGGTAACTG+TGG | - | Chr5:21111231-21111250 | MsG0580025602.01.T01:CDS | 45.0% |
| !! | GTTGATGGCACTATCACCTA+TGG | - | Chr5:21111001-21111020 | MsG0580025602.01.T01:CDS | 45.0% |
| !! | GTTGTTGGTCTTGGTGGATT+AGG | - | Chr5:21111181-21111200 | MsG0580025602.01.T01:intron | 45.0% |
| !! | TAGAGGATGGAGTGCTGAAA+CGG | + | Chr5:21111504-21111523 | None:intergenic | 45.0% |
| !! | TGCTACTTTCATGGGTGAGT+GGG | + | Chr5:21109788-21109807 | None:intergenic | 45.0% |
| !!! | GCCCATCCGAAAGCTTTTTT+GGG | + | Chr5:21109944-21109963 | None:intergenic | 45.0% |
| !!! | TGCCCATCCGAAAGCTTTTT+TGG | + | Chr5:21109945-21109964 | None:intergenic | 45.0% |
| ACAACACCTATGTGCAGTCC+AGG | + | Chr5:21111166-21111185 | None:intergenic | 50.0% | |
| ACACTGTGATCCCAGCACAA+AGG | + | Chr5:21111111-21111130 | None:intergenic | 50.0% | |
| AGCAGCGGCATCAAGTGATA+AGG | + | Chr5:21111083-21111102 | None:intergenic | 50.0% | |
| AGTTGCTGGTGAAGTGACAG+AGG | - | Chr5:21110835-21110854 | MsG0580025602.01.T01:CDS | 50.0% | |
| ATGTCACTCGGACCTTCACA+TGG | - | Chr5:21110648-21110667 | MsG0580025602.01.T01:CDS | 50.0% | |
| CAGCACCCTCTTACCATACA+AGG | + | Chr5:21110453-21110472 | None:intergenic | 50.0% | |
| GAAGTTCGCCAAAGCCTTTG+GGG | - | Chr5:21111216-21111235 | MsG0580025602.01.T01:CDS | 50.0% | |
| GACAAACCTGGACTGCACAT+AGG | - | Chr5:21111157-21111176 | MsG0580025602.01.T01:intron | 50.0% | |
| GATGGCACTATCACCTATGG+AGG | - | Chr5:21111004-21111023 | MsG0580025602.01.T01:CDS | 50.0% | |
| GCACATCACTCGCGAGAAAT+AGG | - | Chr5:21110522-21110541 | MsG0580025602.01.T01:intron | 50.0% | |
| GCAGGGAGAAAGACAATTGG+TGG | - | Chr5:21111704-21111723 | MsG0580025602.01.T01:intron | 50.0% | |
| GGAAACTCCAAAGGCTTCTC+TGG | + | Chr5:21111581-21111600 | None:intergenic | 50.0% | |
| GTGAAGTTCGCCAAAGCCTT+TGG | - | Chr5:21111214-21111233 | MsG0580025602.01.T01:CDS | 50.0% | |
| TCGCGAACAAGACCAGATGA+AGG | - | Chr5:21111321-21111340 | MsG0580025602.01.T01:intron | 50.0% | |
| TCTCCCCTGTTTCCCTGAAA+AGG | + | Chr5:21110594-21110613 | None:intergenic | 50.0% | |
| TTTCAGGGAAACAGGGGAGA+AGG | - | Chr5:21110594-21110613 | MsG0580025602.01.T01:CDS | 50.0% | |
| ! | CTTAGGAGCTGACTCATTCG+TGG | - | Chr5:21111294-21111313 | MsG0580025602.01.T01:CDS | 50.0% |
| ! | GGACTGCACATAGGTGTTGT+TGG | - | Chr5:21111166-21111185 | MsG0580025602.01.T01:intron | 50.0% |
| !! | AATTGGAGACAGGGTTGGTG+TGG | - | Chr5:21110883-21110902 | MsG0580025602.01.T01:CDS | 50.0% |
| !! | ATTGGAGACAGGGTTGGTGT+GGG | - | Chr5:21110884-21110903 | MsG0580025602.01.T01:CDS | 50.0% |
| !! | GCTGTAATGGGCACGTTTGA+TGG | - | Chr5:21111467-21111486 | MsG0580025602.01.T01:intron | 50.0% |
| !! | GTGCTACTTTCATGGGTGAG+TGG | + | Chr5:21109789-21109808 | None:intergenic | 50.0% |
| !! | GTGCTGACTAGTGGTAATGC+AGG | - | Chr5:21110467-21110486 | MsG0580025602.01.T01:intron | 50.0% |
| AAGCTTTCGGATGGGCAGCT+AGG | - | Chr5:21109948-21109967 | MsG0580025602.01.T01:three_prime_UTR | 55.0% | |
| AGCACAAAGGAGAGGAGCAG+CGG | + | Chr5:21111098-21111117 | None:intergenic | 55.0% | |
| AGCTTTCGGATGGGCAGCTA+GGG | - | Chr5:21109949-21109968 | MsG0580025602.01.T01:three_prime_UTR | 55.0% | |
| AGTGACAGAGGTGGGAAGCA+AGG | - | Chr5:21110847-21110866 | MsG0580025602.01.T01:CDS | 55.0% | |
| CTGCTCCTCTCCTTTGTGCT+GGG | - | Chr5:21111098-21111117 | MsG0580025602.01.T01:intron | 55.0% | |
| GCTGGTGAAGTGACAGAGGT+GGG | - | Chr5:21110839-21110858 | MsG0580025602.01.T01:CDS | 55.0% | |
| GGAAACAGGGGAGAAGGATG+TGG | - | Chr5:21110600-21110619 | MsG0580025602.01.T01:CDS | 55.0% | |
| GGTGTCAGAGTAGCCTCCAT+AGG | + | Chr5:21111020-21111039 | None:intergenic | 55.0% | |
| GTGATCCCAGCACAAAGGAG+AGG | + | Chr5:21111106-21111125 | None:intergenic | 55.0% | |
| TGCTGGTGAAGTGACAGAGG+TGG | - | Chr5:21110838-21110857 | MsG0580025602.01.T01:CDS | 55.0% | |
| TGGAGCTCCAGAGAAGCCTT+TGG | - | Chr5:21111571-21111590 | MsG0580025602.01.T01:intron | 55.0% | |
| TGGAGGCTACTCTGACACCA+TGG | - | Chr5:21111021-21111040 | MsG0580025602.01.T01:CDS | 55.0% | |
| !! | CGCCAAAGCCTTTGGGGTTA+AGG | - | Chr5:21111222-21111241 | MsG0580025602.01.T01:CDS | 55.0% |
| !! | GGTAAGAGGGTGCTGACTAG+TGG | - | Chr5:21110458-21110477 | MsG0580025602.01.T01:intron | 55.0% |
| !! | TTGGAGACAGGGTTGGTGTG+GGG | - | Chr5:21110885-21110904 | MsG0580025602.01.T01:CDS | 55.0% |
| GCTGCTCCTCTCCTTTGTGC+TGG | - | Chr5:21111097-21111116 | MsG0580025602.01.T01:intron | 60.0% | |
| GTTGGTGTGGGGTGCATGGT+TGG | - | Chr5:21110896-21110915 | MsG0580025602.01.T01:CDS | 60.0% | |
| TGGGCAGCTAGGGACACATC+TGG | - | Chr5:21109959-21109978 | MsG0580025602.01.T01:three_prime_UTR | 60.0% | |
| !! | CAGGGTTGGTGTGGGGTGCA+TGG | - | Chr5:21110892-21110911 | MsG0580025602.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 21109764 | 21112152 | 21109764 | ID=MsG0580025602.01;Name=MsG0580025602.01 |
| Chr5 | mRNA | 21109764 | 21112152 | 21109764 | ID=MsG0580025602.01.T01;Parent=MsG0580025602.01;Name=MsG0580025602.01.T01;_AED=0.41;_eAED=0.41;_QI=150|1|1|1|1|1|5|239|361 |
| Chr5 | exon | 21109764 | 21110208 | 21109764 | ID=MsG0580025602.01.T01:exon:9070;Parent=MsG0580025602.01.T01 |
| Chr5 | exon | 21110296 | 21110449 | 21110296 | ID=MsG0580025602.01.T01:exon:9069;Parent=MsG0580025602.01.T01 |
| Chr5 | exon | 21110574 | 21111087 | 21110574 | ID=MsG0580025602.01.T01:exon:9068;Parent=MsG0580025602.01.T01 |
| Chr5 | exon | 21111203 | 21111316 | 21111203 | ID=MsG0580025602.01.T01:exon:9067;Parent=MsG0580025602.01.T01 |
| Chr5 | exon | 21111905 | 21112152 | 21111905 | ID=MsG0580025602.01.T01:exon:9066;Parent=MsG0580025602.01.T01 |
| Chr5 | five_prime_UTR | 21112003 | 21112152 | 21112003 | ID=MsG0580025602.01.T01:five_prime_utr;Parent=MsG0580025602.01.T01 |
| Chr5 | CDS | 21111905 | 21112002 | 21111905 | ID=MsG0580025602.01.T01:cds;Parent=MsG0580025602.01.T01 |
| Chr5 | CDS | 21111203 | 21111316 | 21111203 | ID=MsG0580025602.01.T01:cds;Parent=MsG0580025602.01.T01 |
| Chr5 | CDS | 21110574 | 21111087 | 21110574 | ID=MsG0580025602.01.T01:cds;Parent=MsG0580025602.01.T01 |
| Chr5 | CDS | 21110296 | 21110449 | 21110296 | ID=MsG0580025602.01.T01:cds;Parent=MsG0580025602.01.T01 |
| Chr5 | CDS | 21110003 | 21110208 | 21110003 | ID=MsG0580025602.01.T01:cds;Parent=MsG0580025602.01.T01 |
| Chr5 | three_prime_UTR | 21109764 | 21110002 | 21109764 | ID=MsG0580025602.01.T01:three_prime_utr;Parent=MsG0580025602.01.T01 |
| Gene Sequence |
| Protein sequence |
