AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580025607.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025607.01.T01 MTR_5g031300 98.066 362 7 0 1 362 1 362 0.0 732
MsG0580025607.01.T01 MTR_5g031305 83.380 361 60 0 1 361 1 361 0.0 627
MsG0580025607.01.T01 MTR_5g031310 83.934 361 58 0 1 361 1 361 0.0 625
MsG0580025607.01.T01 MTR_5g031230 80.110 362 71 1 1 362 1 361 0.0 597
MsG0580025607.01.T01 MTR_4g115300 79.379 354 73 0 9 362 8 361 0.0 588
MsG0580025607.01.T01 MTR_5g031360 78.992 357 75 0 5 361 6 362 0.0 580
MsG0580025607.01.T01 MTR_5g031390 79.379 354 73 0 9 362 8 361 0.0 574
MsG0580025607.01.T01 MTR_5g031250 78.177 362 78 1 1 362 1 361 0.0 573
MsG0580025607.01.T01 MTR_5g031210 77.966 354 78 0 9 362 8 361 0.0 558
MsG0580025607.01.T01 MTR_5g031190 72.881 354 96 0 9 362 8 361 0.0 542
MsG0580025607.01.T01 MTR_5g031180 77.183 355 81 0 8 362 7 361 0.0 540
MsG0580025607.01.T01 MTR_8g068190 75.424 354 87 0 8 361 7 360 0.0 532
MsG0580025607.01.T01 MTR_8g092630 58.402 363 145 2 2 359 53 414 1.35e-148 426
MsG0580025607.01.T01 MTR_5g031430 60.580 345 136 0 15 359 14 358 3.94e-144 412
MsG0580025607.01.T01 MTR_5g031250 80.579 242 46 1 1 242 1 241 1.49e-136 389
MsG0580025607.01.T01 MTR_1g025950 55.587 349 154 1 9 356 7 355 2.93e-129 375
MsG0580025607.01.T01 MTR_1g107425 53.644 343 159 0 12 354 9 351 1.23e-122 358
MsG0580025607.01.T01 MTR_2g009810 52.890 346 161 2 15 359 62 406 1.11e-115 342
MsG0580025607.01.T01 MTR_1g107425 55.072 276 124 0 12 287 9 284 1.02e-97 292
MsG0580025607.01.T01 MTR_2g009820 51.073 233 109 2 131 359 23 254 2.99e-61 197
MsG0580025607.01.T01 MTR_5g031290 61.151 139 50 1 227 361 55 193 8.13e-52 171
MsG0580025607.01.T01 MTR_5g031290 85.185 81 10 2 1 80 1 80 8.34e-42 145
MsG0580025607.01.T01 MTR_8g095220 26.510 298 187 8 11 280 51 344 3.07e-20 91.7
MsG0580025607.01.T01 MTR_8g095220 28.516 256 156 7 11 243 51 302 4.06e-20 90.1
MsG0580025607.01.T01 MTR_0001s0660 27.483 302 191 9 39 317 35 331 1.22e-17 84.3
MsG0580025607.01.T01 MTR_6g466320 25.818 275 181 7 26 288 29 292 1.13e-16 80.9
MsG0580025607.01.T01 MTR_6g465010 25.818 275 181 7 26 288 29 292 1.13e-16 80.9
MsG0580025607.01.T01 MTR_6g465010 25.818 275 181 7 26 288 13 276 1.15e-16 80.5
MsG0580025607.01.T01 MTR_3g089940 21.958 378 254 12 1 345 1 370 1.09e-13 72.0
MsG0580025607.01.T01 MTR_3g089940 21.958 378 254 12 1 345 1 370 1.45e-13 71.6
MsG0580025607.01.T01 MTR_7g068320 26.301 346 205 12 40 344 48 384 1.54e-13 71.6
MsG0580025607.01.T01 MTR_3g089977 21.751 377 253 13 12 355 12 379 1.58e-13 71.6
MsG0580025607.01.T01 MTR_3g099460 27.937 315 185 14 40 320 44 350 3.17e-13 70.5
MsG0580025607.01.T01 MTR_3g099460 27.937 315 185 14 40 320 37 343 3.34e-13 70.5
MsG0580025607.01.T01 MTR_7g099040 25.490 357 223 15 2 328 4 347 6.53e-13 69.7
MsG0580025607.01.T01 MTR_5g045710 24.024 333 222 8 39 343 35 364 2.37e-12 67.8
MsG0580025607.01.T01 MTR_1g069430 25.948 343 212 15 1 313 1 331 2.42e-12 67.8
MsG0580025607.01.T01 MTR_7g068330 27.616 344 202 17 40 344 41 376 2.74e-12 67.8
MsG0580025607.01.T01 MTR_3g089940 23.693 287 188 8 1 263 1 280 3.27e-12 67.4
MsG0580025607.01.T01 MTR_3g089940 23.693 287 188 8 1 263 1 280 4.00e-12 67.0
MsG0580025607.01.T01 MTR_3g089970 21.809 376 253 12 3 345 4 371 8.28e-12 66.2
MsG0580025607.01.T01 MTR_5g031380 58.537 41 17 0 81 121 19 59 3.64e-11 60.1
MsG0580025607.01.T01 MTR_3g099460 32.886 149 74 5 40 167 44 187 4.51e-11 63.5
MsG0580025607.01.T01 MTR_3g099460 32.886 149 74 5 40 167 37 180 4.61e-11 63.5
MsG0580025607.01.T01 MTR_3g079180 26.510 298 187 13 39 308 40 333 5.56e-11 63.9
MsG0580025607.01.T01 MTR_5g087710 26.100 341 212 12 40 345 46 381 8.97e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025607.01.T01 AT4G37980 69.101 356 108 1 6 361 3 356 2.96e-173 486
MsG0580025607.01.T01 AT4G37990 68.857 350 109 0 12 361 7 356 8.33e-167 470
MsG0580025607.01.T01 AT4G37970 61.190 353 137 0 9 361 9 361 7.53e-163 460
MsG0580025607.01.T01 AT4G39330 60.340 353 140 0 8 360 7 359 3.63e-161 456
MsG0580025607.01.T01 AT2G21890 58.405 351 145 1 13 362 6 356 4.53e-151 431
MsG0580025607.01.T01 AT2G21730 58.807 352 143 2 13 362 6 357 2.05e-150 429
MsG0580025607.01.T01 AT4G37980 68.707 294 90 1 6 299 3 294 9.96e-135 386
MsG0580025607.01.T01 AT4G39330 59.322 295 120 0 8 302 7 301 5.20e-128 370
MsG0580025607.01.T01 AT4G37970 58.966 290 119 0 9 298 9 298 1.27e-123 358
MsG0580025607.01.T01 AT3G19450 54.046 346 159 0 12 357 9 354 5.90e-117 343
MsG0580025607.01.T01 AT1G72680 50.146 343 170 1 17 359 14 355 2.63e-113 334
MsG0580025607.01.T01 AT4G34230 52.586 348 165 0 7 354 3 350 6.49e-107 318
MsG0580025607.01.T01 AT4G34230 52.299 348 166 0 7 354 3 350 4.55e-106 315
MsG0580025607.01.T01 AT4G37970 59.072 237 97 0 9 245 9 245 2.80e-99 295
MsG0580025607.01.T01 AT4G37970 59.574 235 95 0 9 243 9 243 5.38e-99 294
MsG0580025607.01.T01 AT5G63620 25.685 292 187 7 16 280 58 346 1.15e-20 93.2
MsG0580025607.01.T01 AT5G63620 25.685 292 187 7 16 280 58 346 1.49e-20 92.8
MsG0580025607.01.T01 AT5G63620 28.390 236 146 5 16 230 58 291 3.82e-20 90.5
MsG0580025607.01.T01 AT1G22430 26.183 317 202 12 40 328 42 354 1.72e-17 83.6
MsG0580025607.01.T01 AT1G22430 26.183 317 202 12 40 328 42 354 1.72e-17 83.6
MsG0580025607.01.T01 AT1G64710 26.509 381 233 15 1 344 1 371 3.76e-17 82.4
MsG0580025607.01.T01 AT5G51970 26.562 256 167 6 37 280 40 286 6.97e-17 81.3
MsG0580025607.01.T01 AT5G51970 26.562 256 167 6 37 280 40 286 6.97e-17 81.3
MsG0580025607.01.T01 AT5G43940 25.964 389 239 16 1 353 1 376 1.20e-16 80.9
MsG0580025607.01.T01 AT1G64710 26.608 342 208 13 40 344 13 348 2.84e-16 79.7
MsG0580025607.01.T01 AT5G43940 26.000 350 214 13 40 353 48 388 3.84e-16 79.3
MsG0580025607.01.T01 AT1G32780 26.158 367 214 16 40 359 37 393 1.32e-15 77.8
MsG0580025607.01.T01 AT4G22110 24.927 341 215 16 40 344 43 378 1.88e-15 77.4
MsG0580025607.01.T01 AT4G22110 24.927 341 215 16 40 344 43 378 1.88e-15 77.4
MsG0580025607.01.T01 AT1G22430 26.500 200 128 5 40 222 42 239 4.86e-13 69.7
MsG0580025607.01.T01 AT1G22430 26.500 200 128 5 40 222 42 239 4.87e-13 69.3
MsG0580025607.01.T01 AT1G22430 26.500 200 128 5 40 222 42 239 4.87e-13 69.3
MsG0580025607.01.T01 AT1G22440 24.857 350 206 14 40 345 40 376 6.58e-13 69.7
MsG0580025607.01.T01 AT5G42250 25.000 296 193 9 40 308 45 338 4.92e-12 67.0
MsG0580025607.01.T01 AT1G77120 22.338 385 262 14 1 355 1 378 1.75e-11 65.5
MsG0580025607.01.T01 AT4G22110 26.267 217 138 9 40 237 43 256 2.61e-11 63.9

Find 99 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCACATGTGACTACAAATT+TGG 0.137677 5:+21191486 None:intergenic
TATCGATTTGTGATTGATAT+TGG 0.198958 5:-21190552 MsG0580025607.01.T01:CDS
GCCCAACCAAAGGCCTTCTT+TGG 0.253742 5:+21192658 None:intergenic
TCCATTTATCCACTTGTTCC+TGG 0.254331 5:-21191883 MsG0580025607.01.T01:CDS
CCCAGGAACAAGTGGATAAA+TGG 0.269203 5:+21191882 None:intergenic
CAAGATTGTCATTACAATCT+TGG 0.292744 5:+21191521 None:intergenic
GTGAAATTCGCCAAAGCTTT+CGG 0.307768 5:-21191241 MsG0580025607.01.T01:CDS
CCACATGTGACTACAAATTT+GGG 0.308824 5:+21191487 None:intergenic
GTTGTTGGTCTTGGTGGGCT+TGG 0.312818 5:-21191274 MsG0580025607.01.T01:CDS
CCTGAATATACTTTAATTCA+AGG 0.316011 5:-21190881 MsG0580025607.01.T01:intron
ACCAAGCTCTTAAACTTTGC+AGG 0.327113 5:-21190517 MsG0580025607.01.T01:exon
CATATAGGTGTTGTTGGTCT+TGG 0.327351 5:-21191283 MsG0580025607.01.T01:CDS
GAGTCAAGTTGGAGGGTTAA+AGG 0.329887 5:-21190691 MsG0580025607.01.T01:CDS
TATGGTACCTGAATCTGCTT+TGG 0.345939 5:+21191127 None:intergenic
CCTTGAATTAAAGTATATTC+AGG 0.347223 5:+21190881 None:intergenic
CCCATTCATTCTTCGCCATA+TGG 0.361451 5:+21191911 None:intergenic
AACTATAGGCATGAGCTTGC+GGG 0.363330 5:-21191634 MsG0580025607.01.T01:intron
TAGTGACCCAAAGCAGATTC+AGG 0.370893 5:-21191134 MsG0580025607.01.T01:intron
AACATACCTCTTGAATTTGC+TGG 0.378852 5:-21191376 MsG0580025607.01.T01:CDS
TCCTGCAAAGTTTAAGAGCT+TGG 0.390576 5:+21190516 None:intergenic
CATCCTCTCTTACCAATGAT+TGG 0.394800 5:-21190965 MsG0580025607.01.T01:CDS
GTTAGGCGATGTACTAATTA+CGG 0.396532 5:+21191207 None:intergenic
CACATTAGCACCGAAAGCTT+TGG 0.402256 5:+21191231 None:intergenic
CCCCTTTCAATTTCTCAAGA+AGG 0.406895 5:-21192609 MsG0580025607.01.T01:intron
TTAGGCTGCAATTGGTACTT+TGG 0.409947 5:-21191017 MsG0580025607.01.T01:intron
TCTTGGTGGGCTTGGTCACA+TGG 0.411120 5:-21191266 MsG0580025607.01.T01:CDS
GCTGGTCCTCTCCTTTGTGC+TGG 0.419633 5:-21191358 MsG0580025607.01.T01:CDS
CCATTTATCCACTTGTTCCT+GGG 0.426610 5:-21191882 MsG0580025607.01.T01:intron
AAATCGTAGAGGACTATATA+CGG 0.427344 5:+21191330 None:intergenic
GGTCTTCATATAGGTGTTGT+TGG 0.429161 5:-21191289 MsG0580025607.01.T01:CDS
TCCAAAGAAGGCCTTTGGTT+GGG 0.430490 5:-21192659 MsG0580025607.01.T01:CDS
GAGCATCCAAAGAAGGCCTT+TGG 0.441279 5:-21192664 MsG0580025607.01.T01:CDS
CGTGATGGAACCGTCACATA+TGG 0.443014 5:-21191454 MsG0580025607.01.T01:CDS
ATGGTACCTGAATCTGCTTT+GGG 0.444222 5:+21191128 None:intergenic
TCCATATGGCGAAGAATGAA+TGG 0.444643 5:-21191912 MsG0580025607.01.T01:CDS
TATCATAACTGAGTTAGAAA+TGG 0.450553 5:-21192707 MsG0580025607.01.T01:exon
AATTCAAGAGGTATGTTGTC+AGG 0.452593 5:+21191382 None:intergenic
GACGGTTCCATCACGATACT+TGG 0.454045 5:+21191462 None:intergenic
ATAGGTGTTGTTGGTCTTGG+TGG 0.454058 5:-21191280 MsG0580025607.01.T01:CDS
AAAGTGGAGAAATTTAAAGT+TGG 0.458834 5:-21191589 MsG0580025607.01.T01:CDS
AACCTTCTTGAGAAATTGAA+AGG 0.464941 5:+21192607 None:intergenic
ATTGGAACAACCTCGATATC+CGG 0.466094 5:+21190624 None:intergenic
GCTGCAATTGGTACTTTGGA+TGG 0.470582 5:-21191013 MsG0580025607.01.T01:CDS
TTTAAAGTTGGAGACAAAGT+AGG 0.474364 5:-21191577 MsG0580025607.01.T01:CDS
ATTGGTCTCTTGAAGTCTCA+TGG 0.481856 5:-21190947 MsG0580025607.01.T01:CDS
GACAAACCTGGTCTTCATAT+AGG 0.486648 5:-21191298 MsG0580025607.01.T01:CDS
GCTGTGTTGACATAATCAAT+TGG 0.493044 5:+21190606 None:intergenic
ATGGAAATCTAAATTATCCT+TGG 0.493824 5:+21190426 None:intergenic
CCATATGGCGAAGAATGAAT+GGG 0.494659 5:-21191911 MsG0580025607.01.T01:CDS
AGCAATGGAGCGTCTTGCTA+AGG 0.496567 5:-21190586 MsG0580025607.01.T01:CDS
CATGGAAAGCTTATAATGCT+TGG 0.504127 5:-21190929 MsG0580025607.01.T01:CDS
ATGTCACTCTGATCTCCATA+TGG 0.507753 5:-21191926 MsG0580025607.01.T01:CDS
ATATTAGCTGGGAGTCAAGT+TGG 0.515176 5:-21190702 MsG0580025607.01.T01:CDS
AGTAGTAGAGCATCCAAAGA+AGG 0.516872 5:-21192671 MsG0580025607.01.T01:CDS
ACCTTCTTGAGAAATTGAAA+GGG 0.517167 5:+21192608 None:intergenic
GATACATTAGCATGATTCAC+GGG 0.517320 5:-21190495 MsG0580025607.01.T01:three_prime_UTR
TAGGTGTTGTTGGTCTTGGT+GGG 0.518566 5:-21191279 MsG0580025607.01.T01:CDS
TAACTATAGGCATGAGCTTG+CGG 0.523164 5:-21191635 MsG0580025607.01.T01:intron
GAGAGGATGAACTGCTGAAA+CGG 0.531675 5:+21190979 None:intergenic
ATCCAAAGAAGGCCTTTGGT+TGG 0.536152 5:-21192660 MsG0580025607.01.T01:CDS
TACATCGCCTAACAAAGAAA+AGG 0.540053 5:-21191197 MsG0580025607.01.T01:CDS
TGGGCAGCTAGAGATCCATC+TGG 0.544091 5:-21192640 MsG0580025607.01.T01:CDS
GTATATTCAGGAAGCTGCAA+AGG 0.546317 5:+21190893 None:intergenic
CTCCACTTTACTTCCCACTT+CGG 0.546580 5:+21191603 None:intergenic
TGGAGGTTACTCCGACTCAA+TGG 0.547063 5:-21191434 MsG0580025607.01.T01:CDS
AACCGAAGTGGGAAGTAAAG+TGG 0.553032 5:-21191605 MsG0580025607.01.T01:CDS
TTTAAGTGTATCACTTGCCA+AGG 0.555268 5:-21190443 MsG0580025607.01.T01:three_prime_UTR
GGATACATTAGCATGATTCA+CGG 0.564737 5:-21190496 MsG0580025607.01.T01:three_prime_UTR
GACTTCAAGAGACCAATCAT+TGG 0.565239 5:+21190953 None:intergenic
GCAATGGAGCGTCTTGCTAA+GGG 0.567348 5:-21190585 MsG0580025607.01.T01:CDS
GGCAGAACACAATGTAAAGC+CGG 0.571570 5:-21190643 MsG0580025607.01.T01:CDS
AACATATATCATAATAACGA+TGG 0.574776 5:+21190407 None:intergenic
ATCTCTAGCTGCCCAACCAA+AGG 0.580130 5:+21192648 None:intergenic
AAAACATACCCAGGAACAAG+TGG 0.582294 5:+21191874 None:intergenic
CTCGTCTGCAACCATTGAGT+CGG 0.587984 5:+21191423 None:intergenic
AGTTGGAGACAAAGTAGGTG+TGG 0.589771 5:-21191572 MsG0580025607.01.T01:CDS
AGACCAATCATTGGTAAGAG+AGG 0.590479 5:+21190962 None:intergenic
AAGGAAGCAATAGAACACTT+AGG 0.590978 5:-21191178 MsG0580025607.01.T01:CDS
AAAGGGGAAAGAACACCAGA+TGG 0.601074 5:+21192625 None:intergenic
TGATTATGTCAACACAGCAA+TGG 0.603631 5:-21190601 MsG0580025607.01.T01:CDS
CAATGTAAAGCCGGATATCG+AGG 0.604709 5:-21190634 MsG0580025607.01.T01:CDS
CCTTCTTGAGAAATTGAAAG+GGG 0.611092 5:+21192609 None:intergenic
GTTGGAGACAAAGTAGGTGT+GGG 0.615995 5:-21191571 MsG0580025607.01.T01:CDS
TAGCTGGGAGTCAAGTTGGA+GGG 0.620945 5:-21190698 MsG0580025607.01.T01:CDS
GCGGGTGTAGTAACCGAAGT+GGG 0.625376 5:-21191616 MsG0580025607.01.T01:CDS
TTAGCTGGGAGTCAAGTTGG+AGG 0.628577 5:-21190699 MsG0580025607.01.T01:CDS
TGCGGGTGTAGTAACCGAAG+TGG 0.637661 5:-21191617 MsG0580025607.01.T01:CDS
CCCAAATTTGTAGTCACATG+TGG 0.638631 5:-21191487 MsG0580025607.01.T01:CDS
AGAGGACCAGCAAATTCAAG+AGG 0.642176 5:+21191370 None:intergenic
GATGGAACCGTCACATATGG+AGG 0.644175 5:-21191451 MsG0580025607.01.T01:CDS
ACAACACCTATATGAAGACC+AGG 0.655031 5:+21191292 None:intergenic
TGTGGTGCCAAGTATCGTGA+TGG 0.659003 5:-21191469 MsG0580025607.01.T01:CDS
GGAGTAACCTCCATATGTGA+CGG 0.672635 5:+21191444 None:intergenic
CACATGTGACTACAAATTTG+GGG 0.672670 5:+21191488 None:intergenic
GTGACACCAGCACAAAGGAG+AGG 0.674659 5:+21191352 None:intergenic
ATACATTAGCATGATTCACG+GGG 0.691826 5:-21190494 MsG0580025607.01.T01:three_prime_UTR
CATATGGCGAAGAATGAATG+GGG 0.702857 5:-21191910 MsG0580025607.01.T01:CDS
ATACGGTGACACCAGCACAA+AGG 0.718821 5:+21191347 None:intergenic
TACATTAGCATGATTCACGG+GGG 0.769760 5:-21190493 MsG0580025607.01.T01:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAACAAAGATAATAAAA+AGG + Chr5:21191185-21191204 None:intergenic 10.0%
!! TTAATTTCATATTATTGATA+GGG - Chr5:21192297-21192316 MsG0580025607.01.T01:intron 10.0%
!! ACATAGATCTAAATAATTTA+AGG + Chr5:21190990-21191009 None:intergenic 15.0%
!! CAAAATAAATAAGAATAGAT+CGG - Chr5:21190651-21190670 MsG0580025607.01.T01:CDS 15.0%
!! CATAGATCTAAATAATTTAA+GGG + Chr5:21190989-21191008 None:intergenic 15.0%
!! GTTAATTTCATATTATTGAT+AGG - Chr5:21192296-21192315 MsG0580025607.01.T01:intron 15.0%
!!! GTTTAATTTAGATGTAATTT+TGG + Chr5:21190868-21190887 None:intergenic 15.0%
!! AAAAGATTAAAACAAGGAAT+TGG - Chr5:21190564-21190583 MsG0580025607.01.T01:CDS 20.0%
!! AACATATATCATAATAACGA+TGG + Chr5:21192624-21192643 None:intergenic 20.0%
!! ACTGATAAAAGATTAAAACA+AGG - Chr5:21190558-21190577 MsG0580025607.01.T01:CDS 20.0%
!! ATTATTTAGATCTATGTTTC+TGG - Chr5:21190993-21191012 MsG0580025607.01.T01:CDS 20.0%
!! CAAATGAATTACATATTGTA+TGG + Chr5:21191922-21191941 None:intergenic 20.0%
!! GATACTAATTAATTCAACTT+TGG - Chr5:21191015-21191034 MsG0580025607.01.T01:CDS 20.0%
!! GTAATTGATGTAATAACTAT+AGG - Chr5:21191380-21191399 MsG0580025607.01.T01:CDS 20.0%
!! TAATATTTCTTGAATGTGTT+TGG - Chr5:21190626-21190645 MsG0580025607.01.T01:CDS 20.0%
!! TTAGTTTAGTATTAGAGTTA+TGG + Chr5:21190695-21190714 None:intergenic 20.0%
!!! AACTAATAGATTTTAAGTAG+AGG + Chr5:21190800-21190819 None:intergenic 20.0%
!!! CGATCTATTCTTATTTATTT+TGG + Chr5:21190653-21190672 None:intergenic 20.0%
!!! TTGTTTTAATCTTTTATCAG+TGG + Chr5:21190559-21190578 None:intergenic 20.0%
! ATAATTGAACCAAACTTCAT+TGG - Chr5:21190958-21190977 MsG0580025607.01.T01:CDS 25.0%
! ATATATATATTCCCTTGGAA+TGG - Chr5:21192195-21192214 MsG0580025607.01.T01:intron 25.0%
! ATGGAAATCTAAATTATCCT+TGG + Chr5:21192605-21192624 None:intergenic 25.0%
! ATTAATTTCCTTGAAACTAG+TGG + Chr5:21190517-21190536 None:intergenic 25.0%
! ATTCCAAGGGAATATATATA+TGG + Chr5:21192196-21192215 None:intergenic 25.0%
! CCTGAATATACTTTAATTCA+AGG - Chr5:21192147-21192166 MsG0580025607.01.T01:intron 25.0%
! CCTTGAATTAAAGTATATTC+AGG + Chr5:21192150-21192169 None:intergenic 25.0%
! GAGTATTATATTTACAGACA+TGG + Chr5:21191221-21191240 None:intergenic 25.0%
! GTGAGCATAAAATTTATACA+TGG + Chr5:21192271-21192290 None:intergenic 25.0%
! TAAATAAGAATAGATCGGTT+CGG - Chr5:21190656-21190675 MsG0580025607.01.T01:CDS 25.0%
! TATCATAACTGAGTTAGAAA+TGG - Chr5:21190321-21190340 MsG0580025607.01.T01:three_prime_UTR 25.0%
! TTTATCAGTGGAAAAAGAAA+AGG + Chr5:21190547-21190566 None:intergenic 25.0%
! TTTCCATATATATATTCCCT+TGG - Chr5:21192190-21192209 MsG0580025607.01.T01:intron 25.0%
! TTTGACACACATCAAATTAA+AGG - Chr5:21190755-21190774 MsG0580025607.01.T01:intron 25.0%
!! AAAGTGGAGAAATTTAAAGT+TGG - Chr5:21191439-21191458 MsG0580025607.01.T01:CDS 25.0%
!! AAGAATGTATGATGATAATG+CGG + Chr5:21190891-21190910 None:intergenic 25.0%
!! GGCAAAAAATAATTCTAGTT+TGG + Chr5:21190936-21190955 None:intergenic 25.0%
!! GTCACTAATTTTTAATGATG+TGG + Chr5:21190719-21190738 None:intergenic 25.0%
!!! AATTCTAGTTTGGTTCATTT+TGG + Chr5:21190926-21190945 None:intergenic 25.0%
!!! ATAATTTTTTAGGCTGCAAT+TGG - Chr5:21192003-21192022 MsG0580025607.01.T01:intron 25.0%
!!! TATCGATTTGTGATTGATAT+TGG - Chr5:21192476-21192495 MsG0580025607.01.T01:intron 25.0%
!!! TCAAGAAATGATTGATTTTG+CGG - Chr5:21192364-21192383 MsG0580025607.01.T01:intron 25.0%
AAATCGTAGAGGACTATATA+CGG + Chr5:21191701-21191720 None:intergenic 30.0%
AACCTTCTTGAGAAATTGAA+AGG + Chr5:21190424-21190443 None:intergenic 30.0%
ACCTTCTTGAGAAATTGAAA+GGG + Chr5:21190423-21190442 None:intergenic 30.0%
ATAGGGAGAAAAATATTAGC+TGG - Chr5:21192314-21192333 MsG0580025607.01.T01:intron 30.0%
CAAGATTGTCATTACAATCT+TGG + Chr5:21191510-21191529 None:intergenic 30.0%
GATTAAAACAAGGAATTGGA+TGG - Chr5:21190568-21190587 MsG0580025607.01.T01:CDS 30.0%
TAGGGAGAAAAATATTAGCT+GGG - Chr5:21192315-21192334 MsG0580025607.01.T01:intron 30.0%
TGAAAAAGATGTAGCATTCA+AGG - Chr5:21191063-21191082 MsG0580025607.01.T01:intron 30.0%
! AGAATGTATGATGATAATGC+GGG + Chr5:21190890-21190909 None:intergenic 30.0%
! AGCAAAAGTATATGCTACAT+TGG + Chr5:21191360-21191379 None:intergenic 30.0%
! ATTGCTTCCTTTTCTTTGTT+AGG + Chr5:21191841-21191860 None:intergenic 30.0%
! TGAAGTTTGGTTCAATTATG+AGG + Chr5:21190957-21190976 None:intergenic 30.0%
! TTTAAAGTTGGAGACAAAGT+AGG - Chr5:21191451-21191470 MsG0580025607.01.T01:CDS 30.0%
!! CATTCAAGGTTTTGTATTGT+GGG - Chr5:21191077-21191096 MsG0580025607.01.T01:intron 30.0%
!! TTTGGTGCACCAAAATTTTA+GGG - Chr5:21191033-21191052 MsG0580025607.01.T01:intron 30.0%
!!! TATAGTCCTCTACGATTTTT+TGG - Chr5:21191703-21191722 MsG0580025607.01.T01:intron 30.0%
AACATACCTCTTGAATTTGC+TGG - Chr5:21191652-21191671 MsG0580025607.01.T01:intron 35.0%
AAGGAAGCAATAGAACACTT+AGG - Chr5:21191850-21191869 MsG0580025607.01.T01:intron 35.0%
AATTTCCTTGAAACTAGTGG+AGG + Chr5:21190514-21190533 None:intergenic 35.0%
ACCACATGTGACTACAAATT+TGG + Chr5:21191545-21191564 None:intergenic 35.0%
ATACATTAGCATGATTCACG+GGG - Chr5:21192534-21192553 MsG0580025607.01.T01:intron 35.0%
ATTTCCTTGAAACTAGTGGA+GGG + Chr5:21190513-21190532 None:intergenic 35.0%
CACATGTGACTACAAATTTG+GGG + Chr5:21191543-21191562 None:intergenic 35.0%
CATGGAAAGCTTATAATGCT+TGG - Chr5:21192099-21192118 MsG0580025607.01.T01:intron 35.0%
CCACATGTGACTACAAATTT+GGG + Chr5:21191544-21191563 None:intergenic 35.0%
CCTTCTTGAGAAATTGAAAG+GGG + Chr5:21190422-21190441 None:intergenic 35.0%
GATACATTAGCATGATTCAC+GGG - Chr5:21192533-21192552 MsG0580025607.01.T01:intron 35.0%
GGATACATTAGCATGATTCA+CGG - Chr5:21192532-21192551 MsG0580025607.01.T01:intron 35.0%
GTTAGGCGATGTACTAATTA+CGG + Chr5:21191824-21191843 None:intergenic 35.0%
TACATCGCCTAACAAAGAAA+AGG - Chr5:21191831-21191850 MsG0580025607.01.T01:intron 35.0%
TGATTATGTCAACACAGCAA+TGG - Chr5:21192427-21192446 MsG0580025607.01.T01:intron 35.0%
TTTAAGTGTATCACTTGCCA+AGG - Chr5:21192585-21192604 MsG0580025607.01.T01:intron 35.0%
! AATTCAAGAGGTATGTTGTC+AGG + Chr5:21191649-21191668 None:intergenic 35.0%
! CACCTGTTTCCCTAAAATTT+TGG + Chr5:21191045-21191064 None:intergenic 35.0%
! GCTGTGTTGACATAATCAAT+TGG + Chr5:21192425-21192444 None:intergenic 35.0%
!! CACCAAAATTTTAGGGAAAC+AGG - Chr5:21191040-21191059 MsG0580025607.01.T01:intron 35.0%
!! CTTTGGTGCACCAAAATTTT+AGG - Chr5:21191032-21191051 MsG0580025607.01.T01:intron 35.0%
!! GCATTCAAGGTTTTGTATTG+TGG - Chr5:21191076-21191095 MsG0580025607.01.T01:intron 35.0%
AAAACATACCCAGGAACAAG+TGG + Chr5:21191157-21191176 None:intergenic 40.0%
AAGGAGTTCAAAACATACCC+AGG + Chr5:21191166-21191185 None:intergenic 40.0%
ACAACACCTATATGAAGACC+AGG + Chr5:21191739-21191758 None:intergenic 40.0%
ACCAAGCTCTTAAACTTTGC+AGG - Chr5:21192511-21192530 MsG0580025607.01.T01:intron 40.0%
AGACCAATCATTGGTAAGAG+AGG + Chr5:21192069-21192088 None:intergenic 40.0%
ATATTAGCTGGGAGTCAAGT+TGG - Chr5:21192326-21192345 MsG0580025607.01.T01:intron 40.0%
ATATTCCCTTGGAATGGTTC+AGG - Chr5:21192201-21192220 MsG0580025607.01.T01:intron 40.0%
ATGGTACCTGAATCTGCTTT+GGG + Chr5:21191903-21191922 None:intergenic 40.0%
ATGTCACTCTGATCTCCATA+TGG - Chr5:21191102-21191121 MsG0580025607.01.T01:intron 40.0%
ATTGGAACAACCTCGATATC+CGG + Chr5:21192407-21192426 None:intergenic 40.0%
CATATGGCGAAGAATGAATG+GGG - Chr5:21191118-21191137 MsG0580025607.01.T01:intron 40.0%
CATCCTCTCTTACCAATGAT+TGG - Chr5:21192063-21192082 MsG0580025607.01.T01:intron 40.0%
CCATATGGCGAAGAATGAAT+GGG - Chr5:21191117-21191136 MsG0580025607.01.T01:intron 40.0%
CCATTTATCCACTTGTTCCT+GGG - Chr5:21191146-21191165 MsG0580025607.01.T01:CDS 40.0%
CCCAAATTTGTAGTCACATG+TGG - Chr5:21191541-21191560 MsG0580025607.01.T01:CDS 40.0%
CCCCTTTCAATTTCTCAAGA+AGG - Chr5:21190419-21190438 MsG0580025607.01.T01:three_prime_UTR 40.0%
GACTTCAAGAGACCAATCAT+TGG + Chr5:21192078-21192097 None:intergenic 40.0%
GTATATTCAGGAAGCTGCAA+AGG + Chr5:21192138-21192157 None:intergenic 40.0%
GTGAAATTCGCCAAAGCTTT+CGG - Chr5:21191787-21191806 MsG0580025607.01.T01:intron 40.0%
TAACTATAGGCATGAGCTTG+CGG - Chr5:21191393-21191412 MsG0580025607.01.T01:CDS 40.0%
TACATTAGCATGATTCACGG+GGG - Chr5:21192535-21192554 MsG0580025607.01.T01:intron 40.0%
TATGGTACCTGAATCTGCTT+TGG + Chr5:21191904-21191923 None:intergenic 40.0%
TCCATATGGCGAAGAATGAA+TGG - Chr5:21191116-21191135 MsG0580025607.01.T01:intron 40.0%
TCCATTTATCCACTTGTTCC+TGG - Chr5:21191145-21191164 MsG0580025607.01.T01:CDS 40.0%
TCCTGCAAAGTTTAAGAGCT+TGG + Chr5:21192515-21192534 None:intergenic 40.0%
TCGAGTCCAAAAAATCGTAG+AGG + Chr5:21191712-21191731 None:intergenic 40.0%
TTAGGCTGCAATTGGTACTT+TGG - Chr5:21192011-21192030 MsG0580025607.01.T01:intron 40.0%
TTTCCTTGAAACTAGTGGAG+GGG + Chr5:21190512-21190531 None:intergenic 40.0%
TTTCTCCTGAACCATTCCAA+GGG + Chr5:21192209-21192228 None:intergenic 40.0%
! AGTAGTAGAGCATCCAAAGA+AGG - Chr5:21190357-21190376 MsG0580025607.01.T01:three_prime_UTR 40.0%
! ATTGGTCTCTTGAAGTCTCA+TGG - Chr5:21192081-21192100 MsG0580025607.01.T01:intron 40.0%
! GACAAACCTGGTCTTCATAT+AGG - Chr5:21191730-21191749 MsG0580025607.01.T01:intron 40.0%
! GGTCTTCATATAGGTGTTGT+TGG - Chr5:21191739-21191758 MsG0580025607.01.T01:intron 40.0%
! TTTTCTCCTGAACCATTCCA+AGG + Chr5:21192210-21192229 None:intergenic 40.0%
!! AAGTAGAGGCATCAAGATGT+TGG + Chr5:21190786-21190805 None:intergenic 40.0%
!! CATATAGGTGTTGTTGGTCT+TGG - Chr5:21191745-21191764 MsG0580025607.01.T01:intron 40.0%
!!! TTTTTTGGACTCGACAAACC+TGG - Chr5:21191718-21191737 MsG0580025607.01.T01:intron 40.0%
AAAGGGGAAAGAACACCAGA+TGG + Chr5:21190406-21190425 None:intergenic 45.0%
AACCGAAGTGGGAAGTAAAG+TGG - Chr5:21191423-21191442 MsG0580025607.01.T01:CDS 45.0%
AACTATAGGCATGAGCTTGC+GGG - Chr5:21191394-21191413 MsG0580025607.01.T01:CDS 45.0%
AGAGGACCAGCAAATTCAAG+AGG + Chr5:21191661-21191680 None:intergenic 45.0%
AGTTGGAGACAAAGTAGGTG+TGG - Chr5:21191456-21191475 MsG0580025607.01.T01:CDS 45.0%
ATCCAAAGAAGGCCTTTGGT+TGG - Chr5:21190368-21190387 MsG0580025607.01.T01:three_prime_UTR 45.0%
CAATGTAAAGCCGGATATCG+AGG - Chr5:21192394-21192413 MsG0580025607.01.T01:intron 45.0%
CCCAGGAACAAGTGGATAAA+TGG + Chr5:21191149-21191168 None:intergenic 45.0%
CCCATTCATTCTTCGCCATA+TGG + Chr5:21191120-21191139 None:intergenic 45.0%
CTCCACTTTACTTCCCACTT+CGG + Chr5:21191428-21191447 None:intergenic 45.0%
GAGAGGATGAACTGCTGAAA+CGG + Chr5:21192052-21192071 None:intergenic 45.0%
GCTGCAATTGGTACTTTGGA+TGG - Chr5:21192015-21192034 MsG0580025607.01.T01:intron 45.0%
GGAGTAACCTCCATATGTGA+CGG + Chr5:21191587-21191606 None:intergenic 45.0%
GGCAGAACACAATGTAAAGC+CGG - Chr5:21192385-21192404 MsG0580025607.01.T01:intron 45.0%
GTTGGAGACAAAGTAGGTGT+GGG - Chr5:21191457-21191476 MsG0580025607.01.T01:CDS 45.0%
TAGTGACCCAAAGCAGATTC+AGG - Chr5:21191894-21191913 MsG0580025607.01.T01:CDS 45.0%
TCCAAAGAAGGCCTTTGGTT+GGG - Chr5:21190369-21190388 MsG0580025607.01.T01:three_prime_UTR 45.0%
TTCCTTGAAACTAGTGGAGG+GGG + Chr5:21190511-21190530 None:intergenic 45.0%
! CACATTAGCACCGAAAGCTT+TGG + Chr5:21191800-21191819 None:intergenic 45.0%
!! AGGGTGTTGCCAATGAAGTT+TGG + Chr5:21190970-21190989 None:intergenic 45.0%
!! ATAGGTGTTGTTGGTCTTGG+TGG - Chr5:21191748-21191767 MsG0580025607.01.T01:intron 45.0%
!! GAGTCAAGTTGGAGGGTTAA+AGG - Chr5:21192337-21192356 MsG0580025607.01.T01:intron 45.0%
!! TAGGTGTTGTTGGTCTTGGT+GGG - Chr5:21191749-21191768 MsG0580025607.01.T01:intron 45.0%
!! TAATTAAAATATAAATGAAA+GGG - Chr5:21191321-21191340 MsG0580025607.01.T01:CDS 5.0%
!! TTAATTAAAATATAAATGAA+AGG - Chr5:21191320-21191339 MsG0580025607.01.T01:CDS 5.0%
!!! AATATTATTGATAATTTTTT+AGG - Chr5:21191993-21192012 MsG0580025607.01.T01:intron 5.0%
ATACGGTGACACCAGCACAA+AGG + Chr5:21191684-21191703 None:intergenic 50.0%
ATCTCTAGCTGCCCAACCAA+AGG + Chr5:21190383-21190402 None:intergenic 50.0%
CTCGTCTGCAACCATTGAGT+CGG + Chr5:21191608-21191627 None:intergenic 50.0%
GACGGTTCCATCACGATACT+TGG + Chr5:21191569-21191588 None:intergenic 50.0%
GAGCATCCAAAGAAGGCCTT+TGG - Chr5:21190364-21190383 MsG0580025607.01.T01:three_prime_UTR 50.0%
GATGGAACCGTCACATATGG+AGG - Chr5:21191577-21191596 MsG0580025607.01.T01:CDS 50.0%
TGGAGGTTACTCCGACTCAA+TGG - Chr5:21191594-21191613 MsG0580025607.01.T01:CDS 50.0%
! AGCAATGGAGCGTCTTGCTA+AGG - Chr5:21192442-21192461 MsG0580025607.01.T01:intron 50.0%
! CGTGATGGAACCGTCACATA+TGG - Chr5:21191574-21191593 MsG0580025607.01.T01:CDS 50.0%
! GCAATGGAGCGTCTTGCTAA+GGG - Chr5:21192443-21192462 MsG0580025607.01.T01:intron 50.0%
! TGTGGTGCCAAGTATCGTGA+TGG - Chr5:21191559-21191578 MsG0580025607.01.T01:CDS 50.0%
! TTCCCCCTCCACTAGTTTCA+AGG - Chr5:21190506-21190525 MsG0580025607.01.T01:three_prime_UTR 50.0%
!! TAGCTGGGAGTCAAGTTGGA+GGG - Chr5:21192330-21192349 MsG0580025607.01.T01:intron 50.0%
!! TTAGCTGGGAGTCAAGTTGG+AGG - Chr5:21192329-21192348 MsG0580025607.01.T01:intron 50.0%
GCCCAACCAAAGGCCTTCTT+TGG + Chr5:21190373-21190392 None:intergenic 55.0%
GCGGGTGTAGTAACCGAAGT+GGG - Chr5:21191412-21191431 MsG0580025607.01.T01:CDS 55.0%
GTGACACCAGCACAAAGGAG+AGG + Chr5:21191679-21191698 None:intergenic 55.0%
TGCGGGTGTAGTAACCGAAG+TGG - Chr5:21191411-21191430 MsG0580025607.01.T01:CDS 55.0%
TGGGCAGCTAGAGATCCATC+TGG - Chr5:21190388-21190407 MsG0580025607.01.T01:three_prime_UTR 55.0%
!! GTTGTTGGTCTTGGTGGGCT+TGG - Chr5:21191754-21191773 MsG0580025607.01.T01:intron 55.0%
!! TCTTGGTGGGCTTGGTCACA+TGG - Chr5:21191762-21191781 MsG0580025607.01.T01:intron 55.0%
GCTGGTCCTCTCCTTTGTGC+TGG - Chr5:21191670-21191689 MsG0580025607.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr5 gene 21190307 21192743 21190307 ID=MsG0580025607.01;Name=MsG0580025607.01
Chr5 mRNA 21190307 21192743 21190307 ID=MsG0580025607.01.T01;Parent=MsG0580025607.01;Name=MsG0580025607.01.T01;_AED=0.47;_eAED=0.47;_QI=33|1|1|1|1|1|5|220|362
Chr5 exon 21190307 21190732 21190307 ID=MsG0580025607.01.T01:exon:23602;Parent=MsG0580025607.01.T01
Chr5 exon 21190882 21191035 21190882 ID=MsG0580025607.01.T01:exon:23601;Parent=MsG0580025607.01.T01
Chr5 exon 21191135 21191648 21191135 ID=MsG0580025607.01.T01:exon:23600;Parent=MsG0580025607.01.T01
Chr5 exon 21191883 21191996 21191883 ID=MsG0580025607.01.T01:exon:23599;Parent=MsG0580025607.01.T01
Chr5 exon 21192610 21192743 21192610 ID=MsG0580025607.01.T01:exon:23598;Parent=MsG0580025607.01.T01
Chr5 five_prime_UTR 21192711 21192743 21192711 ID=MsG0580025607.01.T01:five_prime_utr;Parent=MsG0580025607.01.T01
Chr5 CDS 21192610 21192710 21192610 ID=MsG0580025607.01.T01:cds;Parent=MsG0580025607.01.T01
Chr5 CDS 21191883 21191996 21191883 ID=MsG0580025607.01.T01:cds;Parent=MsG0580025607.01.T01
Chr5 CDS 21191135 21191648 21191135 ID=MsG0580025607.01.T01:cds;Parent=MsG0580025607.01.T01
Chr5 CDS 21190882 21191035 21190882 ID=MsG0580025607.01.T01:cds;Parent=MsG0580025607.01.T01
Chr5 CDS 21190527 21190732 21190527 ID=MsG0580025607.01.T01:cds;Parent=MsG0580025607.01.T01
Chr5 three_prime_UTR 21190307 21190526 21190307 ID=MsG0580025607.01.T01:three_prime_utr;Parent=MsG0580025607.01.T01
Gene Sequence

>MsG0580025607.01.T01

ATGGCAACAGAAACTAAAGTAGTAGAGCATCCAAAGAAGGCCTTTGGTTGGGCAGCTAGAGATCCATCTGGTGTTCTTTCCCCTTTCAATTTCTCAAGAAGGGAAACAGGTGAAAAAGATGTAGCATTCAAGGTTTTGTATTGTGGGATATGTCACTCTGATCTCCATATGGCGAAGAATGAATGGGGCACTTCCATTTATCCACTTGTTCCTGGGCATGAGCTTGCGGGTGTAGTAACCGAAGTGGGAAGTAAAGTGGAGAAATTTAAAGTTGGAGACAAAGTAGGTGTGGGCTACTTGATTGATTCATGTCGATCATGCCAAGATTGTAATGACAATCTTGAGAATTACTGCCCCAAATTTGTAGTCACATGTGGTGCCAAGTATCGTGATGGAACCGTCACATATGGAGGTTACTCCGACTCAATGGTTGCAGACGAGCACTTTGTGATTCGCATTCCTGACAACATACCTCTTGAATTTGCTGGTCCTCTCCTTTGTGCTGGTGTCACCGTATATAGTCCTCTACGATTTTTTGGACTCGACAAACCTGGTCTTCATATAGGTGTTGTTGGTCTTGGTGGGCTTGGTCACATGGCTGTGAAATTCGCCAAAGCTTTCGGTGCTAATGTGACCGTAATTAGTACATCGCCTAACAAAGAAAAGGAAGCAATAGAACACTTAGGAGCTGATTCATTTCTGATAAGTAGTGACCCAAAGCAGATTCAGGCTGCAATTGGTACTTTGGATGGTATTATTGACACCGTTTCAGCAGTTCATCCTCTCTTACCAATGATTGGTCTCTTGAAGTCTCATGGAAAGCTTATAATGCTTGGTGTAATAGTACAGCCTTTGCAGCTTCCTGAATATACTTTAATTCAAGGGAGAAAAATATTAGCTGGGAGTCAAGTTGGAGGGTTAAAGGAGACTCAAGAAATGATTGATTTTGCGGCAGAACACAATGTAAAGCCGGATATCGAGGTTGTTCCAATTGATTATGTCAACACAGCAATGGAGCGTCTTGCTAAGGGAGACGTGAAATATCGATTTGTGATTGATATTGGAAACACATTGCAACCAAGCTCTTAA

Protein sequence

>MsG0580025607.01.T01

MATETKVVEHPKKAFGWAARDPSGVLSPFNFSRRETGEKDVAFKVLYCGICHSDLHMAKNEWGTSIYPLVPGHELAGVVTEVGSKVEKFKVGDKVGVGYLIDSCRSCQDCNDNLENYCPKFVVTCGAKYRDGTVTYGGYSDSMVADEHFVIRIPDNIPLEFAGPLLCAGVTVYSPLRFFGLDKPGLHIGVVGLGGLGHMAVKFAKAFGANVTVISTSPNKEKEAIEHLGADSFLISSDPKQIQAAIGTLDGIIDTVSAVHPLLPMIGLLKSHGKLIMLGVIVQPLQLPEYTLIQGRKILAGSQVGGLKETQEMIDFAAEHNVKPDIEVVPIDYVNTAMERLAKGDVKYRFVIDIGNTLQPSS*