AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580025603.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025603.01.T01 MTR_5g031210 96.676 361 12 0 1 361 1 361 0.0 719
MsG0580025603.01.T01 MTR_5g031230 93.906 361 22 0 1 361 1 361 0.0 673
MsG0580025603.01.T01 MTR_4g115300 83.934 361 58 0 1 361 1 361 0.0 624
MsG0580025603.01.T01 MTR_5g031250 83.657 361 59 0 1 361 1 361 0.0 615
MsG0580025603.01.T01 MTR_5g031310 80.332 361 70 1 1 360 1 361 0.0 588
MsG0580025603.01.T01 MTR_5g031305 80.609 361 69 1 1 360 1 361 0.0 587
MsG0580025603.01.T01 MTR_5g031390 79.224 361 75 0 1 361 1 361 0.0 583
MsG0580025603.01.T01 MTR_5g031300 79.006 362 75 1 1 361 1 362 0.0 582
MsG0580025603.01.T01 MTR_5g031360 76.638 351 82 0 10 360 12 362 0.0 557
MsG0580025603.01.T01 MTR_5g031190 73.961 361 94 0 1 361 1 361 0.0 551
MsG0580025603.01.T01 MTR_8g068190 76.389 360 85 0 1 360 1 360 0.0 545
MsG0580025603.01.T01 MTR_5g031180 77.008 361 83 0 1 361 1 361 0.0 542
MsG0580025603.01.T01 MTR_8g092630 62.994 354 130 1 4 357 61 413 4.17e-151 432
MsG0580025603.01.T01 MTR_5g031250 84.647 241 37 0 1 241 1 241 4.84e-145 411
MsG0580025603.01.T01 MTR_5g031430 60.000 345 138 0 14 358 14 358 7.84e-141 404
MsG0580025603.01.T01 MTR_1g025950 60.345 348 137 1 9 355 8 355 1.85e-138 398
MsG0580025603.01.T01 MTR_2g009810 54.624 346 155 2 14 358 62 406 1.44e-118 349
MsG0580025603.01.T01 MTR_1g107425 53.097 339 159 0 15 353 13 351 3.52e-118 346
MsG0580025603.01.T01 MTR_1g107425 53.405 279 129 1 15 293 13 290 2.91e-93 281
MsG0580025603.01.T01 MTR_2g009820 50.413 242 111 2 123 358 16 254 5.24e-65 207
MsG0580025603.01.T01 MTR_5g031290 74.561 114 29 0 247 360 80 193 3.85e-57 184
MsG0580025603.01.T01 MTR_5g031290 86.250 80 10 1 1 79 1 80 5.31e-44 150
MsG0580025603.01.T01 MTR_8g095220 27.333 300 177 10 7 279 59 344 1.06e-20 93.2
MsG0580025603.01.T01 MTR_8g095220 28.736 261 150 9 7 245 59 305 3.56e-20 90.1
MsG0580025603.01.T01 MTR_0001s0660 27.393 303 194 9 38 318 35 333 2.68e-19 89.4
MsG0580025603.01.T01 MTR_6g466320 26.176 340 222 11 1 325 6 331 7.26e-17 81.3
MsG0580025603.01.T01 MTR_6g465010 26.176 340 222 11 1 325 6 331 7.26e-17 81.3
MsG0580025603.01.T01 MTR_3g089977 23.782 349 227 11 39 354 37 379 1.44e-16 80.5
MsG0580025603.01.T01 MTR_3g089940 24.189 339 219 10 39 344 37 370 1.45e-16 80.5
MsG0580025603.01.T01 MTR_3g089940 24.189 339 219 10 39 344 37 370 1.62e-16 80.5
MsG0580025603.01.T01 MTR_3g089970 23.894 339 220 10 39 344 38 371 3.03e-16 79.7
MsG0580025603.01.T01 MTR_6g465010 26.582 316 204 10 25 325 13 315 4.38e-16 79.0
MsG0580025603.01.T01 MTR_3g089940 24.430 307 202 8 39 319 37 339 1.57e-14 74.3
MsG0580025603.01.T01 MTR_3g089940 24.430 307 202 8 39 319 37 339 1.74e-14 74.3
MsG0580025603.01.T01 MTR_5g045710 26.316 209 139 3 38 233 35 241 1.13e-13 72.0
MsG0580025603.01.T01 MTR_7g068320 26.648 349 219 14 39 353 48 393 4.46e-12 67.0
MsG0580025603.01.T01 MTR_5g031380 62.500 40 15 0 81 120 20 59 1.50e-11 61.2
MsG0580025603.01.T01 MTR_3g099460 32.877 146 80 4 39 167 37 181 3.85e-11 64.3
MsG0580025603.01.T01 MTR_3g099460 32.877 146 80 4 39 167 44 188 4.32e-11 64.3
MsG0580025603.01.T01 MTR_3g099460 33.103 145 79 4 39 166 37 180 6.50e-11 63.2
MsG0580025603.01.T01 MTR_3g099460 33.103 145 79 4 39 166 44 187 7.22e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025603.01.T01 AT4G37980 69.714 350 106 0 11 360 7 356 1.15e-173 487
MsG0580025603.01.T01 AT4G37990 68.857 350 109 0 11 360 7 356 4.35e-167 471
MsG0580025603.01.T01 AT4G39330 61.560 359 138 0 1 359 1 359 5.79e-165 465
MsG0580025603.01.T01 AT4G37970 62.817 355 132 0 6 360 7 361 2.85e-164 464
MsG0580025603.01.T01 AT2G21890 61.080 352 136 1 11 361 5 356 1.67e-155 442
MsG0580025603.01.T01 AT2G21730 61.190 353 135 2 11 361 5 357 2.38e-154 439
MsG0580025603.01.T01 AT4G37980 70.035 287 86 0 11 297 7 293 2.97e-136 390
MsG0580025603.01.T01 AT4G39330 61.794 301 115 0 1 301 1 301 6.46e-134 385
MsG0580025603.01.T01 AT4G37970 62.329 292 110 0 6 297 7 298 4.95e-128 369
MsG0580025603.01.T01 AT1G72680 51.429 350 165 2 11 358 9 355 2.02e-116 342
MsG0580025603.01.T01 AT3G19450 52.023 346 166 0 11 356 9 354 1.08e-109 325
MsG0580025603.01.T01 AT4G34230 52.450 347 165 0 7 353 4 350 4.45e-104 310
MsG0580025603.01.T01 AT4G34230 52.161 347 166 0 7 353 4 350 3.63e-103 308
MsG0580025603.01.T01 AT4G37970 62.447 237 89 0 6 242 7 243 4.60e-101 299
MsG0580025603.01.T01 AT4G37970 62.447 237 89 0 6 242 7 243 6.38e-101 299
MsG0580025603.01.T01 AT5G63620 25.076 331 205 11 7 308 61 377 2.14e-20 92.4
MsG0580025603.01.T01 AT5G63620 25.333 300 183 10 7 279 61 346 3.15e-20 91.7
MsG0580025603.01.T01 AT5G63620 26.744 258 153 9 7 242 61 304 6.51e-20 89.7
MsG0580025603.01.T01 AT1G32780 27.123 365 213 16 39 358 37 393 8.14e-17 81.6
MsG0580025603.01.T01 AT5G43940 27.429 350 209 12 39 352 36 376 5.54e-16 79.0
MsG0580025603.01.T01 AT5G43940 27.429 350 209 12 39 352 48 388 6.34e-16 79.0
MsG0580025603.01.T01 AT1G77120 24.348 345 230 10 39 354 36 378 1.93e-15 77.4
MsG0580025603.01.T01 AT5G51970 25.526 333 219 11 8 325 15 333 3.47e-15 76.3
MsG0580025603.01.T01 AT5G51970 25.526 333 219 11 8 325 15 333 3.47e-15 76.3
MsG0580025603.01.T01 AT1G22430 25.503 298 189 9 39 307 42 335 9.01e-15 75.5
MsG0580025603.01.T01 AT1G22430 25.503 298 189 9 39 307 42 335 9.01e-15 75.5
MsG0580025603.01.T01 AT1G22430 25.943 212 139 4 39 233 42 252 1.04e-13 71.6
MsG0580025603.01.T01 AT1G22430 25.943 212 139 4 39 233 42 252 1.36e-13 70.9
MsG0580025603.01.T01 AT1G22430 25.943 212 139 4 39 233 42 252 1.36e-13 70.9
MsG0580025603.01.T01 AT1G22440 27.273 187 118 4 39 208 40 225 2.18e-13 71.2
MsG0580025603.01.T01 AT4G22110 25.667 300 186 11 39 307 43 336 4.54e-13 70.1
MsG0580025603.01.T01 AT4G22110 25.667 300 186 11 39 307 43 336 4.54e-13 70.1
MsG0580025603.01.T01 AT1G64710 25.333 300 194 9 39 310 13 310 9.25e-13 68.9
MsG0580025603.01.T01 AT1G64710 25.333 300 194 9 39 310 36 333 9.78e-13 69.3
MsG0580025603.01.T01 AT4G22110 25.581 215 140 5 39 235 43 255 1.38e-11 64.7

Find 95 sgRNAs with CRISPR-Local

Find 110 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCCGTCTTTCCTTTAATTT+TGG 0.091002 5:+21120408 MsG0580025603.01.T01:CDS
ACCAATTGTAGTAGTGTATT+TGG 0.169399 5:-21119809 None:intergenic
TTGTTTGGATGTTCAAATTC+AGG 0.242919 5:-21119245 None:intergenic
GCTAGCTTACCCAAAATTAA+AGG 0.255595 5:-21120418 None:intergenic
GTGAAATTTGCCAAAGCTTT+TGG 0.281096 5:+21120054 MsG0580025603.01.T01:CDS
CCAATTGTAGTAGTGTATTT+GGG 0.295426 5:-21119808 None:intergenic
ATCAACCTATCCACTAGTTC+CGG 0.329909 5:+21119561 MsG0580025603.01.T01:CDS
CATCCTATCTTGCCACTACT+TGG 0.340131 5:+21120325 MsG0580025603.01.T01:CDS
GCCCAACCAAAGGCCTTGTT+TGG 0.342284 5:-21119260 None:intergenic
GCTGCACCTCTCCTTTGTGC+TGG 0.348614 5:+21119937 MsG0580025603.01.T01:CDS
GATGCTTCCAATTCCACTTC+CGG 0.349243 5:-21120596 None:intergenic
GTTGTTGGTCTTGGTGGGCT+TGG 0.363937 5:+21120021 MsG0580025603.01.T01:CDS
CCCAAATACACTACTACAAT+TGG 0.369731 5:+21119808 MsG0580025603.01.T01:CDS
GTCAAAACTTTCAGAGAAAC+AGG 0.379942 5:+21119457 MsG0580025603.01.T01:intron
CTGGTAGCCGGAAGTGGAAT+TGG 0.383425 5:+21120589 MsG0580025603.01.T01:CDS
GACACGAAAATTTAAGAACT+TGG 0.385264 5:-21120775 None:intergenic
GATATTTGACATCTGCTTTG+AGG 0.389547 5:-21120720 None:intergenic
CATATCGGTGTTGTTGGTCT+TGG 0.391909 5:+21120012 MsG0580025603.01.T01:CDS
GCTAGCAGATGTACTAATTA+CGG 0.396987 5:-21120088 None:intergenic
CACATTAGCACCAAAAGCTT+TGG 0.409643 5:-21120064 None:intergenic
TCTTGGTGGGCTTGGTCACA+TGG 0.411120 5:+21120029 MsG0580025603.01.T01:CDS
TACAGTCCTCTTAGATACTT+TGG 0.411424 5:+21119970 MsG0580025603.01.T01:CDS
GAACATCCAAACAAGGCCTT+TGG 0.412216 5:+21119254 MsG0580025603.01.T01:CDS
ATCGGTGTTGTTGGTCTTGG+TGG 0.419928 5:+21120015 MsG0580025603.01.T01:CDS
CTGCACCTCTCCTTTGTGCT+GGG 0.424848 5:+21119938 MsG0580025603.01.T01:CDS
CGGAGGTTATTCTGACTCAT+TGG 0.425148 5:+21119861 MsG0580025603.01.T01:CDS
ATAGTCTGCACTAGGTACTT+TGG 0.427527 5:+21120273 MsG0580025603.01.T01:intron
TCAACCTATCCACTAGTTCC+GGG 0.430778 5:+21119562 MsG0580025603.01.T01:CDS
TCCAAACAAGGCCTTTGGTT+GGG 0.431952 5:+21119259 MsG0580025603.01.T01:CDS
GGTCTTCATATCGGTGTTGT+TGG 0.432442 5:+21120006 MsG0580025603.01.T01:CDS
CCCAAAATTAAAGGAAAGAC+GGG 0.434247 5:-21120409 None:intergenic
CCCCTTTCAACTTCTCAAGA+AGG 0.434257 5:+21119309 MsG0580025603.01.T01:CDS
AATCCAAGTAGTGGCAAGAT+AGG 0.440808 5:-21120328 None:intergenic
GACAAACCTGGTCTTCATAT+CGG 0.456603 5:+21119997 MsG0580025603.01.T01:CDS
GGGATCTCCAGAGGCTTGTC+AGG 0.464857 5:-21120388 None:intergenic
GCTTCAAGTGGTAAGCCATC+AGG 0.468059 5:-21119913 None:intergenic
GATAGGATGATTTGCTGAAA+CGG 0.468221 5:-21120311 None:intergenic
AGAAAGCTGGTAGCCGGAAG+TGG 0.469070 5:+21120583 MsG0580025603.01.T01:CDS
TTATTCTGACTCATTGGTTG+CGG 0.471466 5:+21119867 MsG0580025603.01.T01:CDS
AACCTTCTTGAGAAGTTGAA+AGG 0.479627 5:-21119311 None:intergenic
ACCTTCTTGAGAAGTTGAAA+GGG 0.480830 5:-21119310 None:intergenic
TACATCTGCTAGCAAAGAAA+AGG 0.482166 5:+21120098 MsG0580025603.01.T01:CDS
TATCGATTTGTGCTCGACAT+TGG 0.486206 5:+21120739 MsG0580025603.01.T01:CDS
AAATACAGGCATGAGATTGT+TGG 0.500255 5:+21119661 MsG0580025603.01.T01:intron
TGGTGTACCTGACAAGCCTC+TGG 0.501156 5:+21120381 MsG0580025603.01.T01:CDS
AAAGTAGAAAAGTTCAATGT+TGG 0.511069 5:+21119706 MsG0580025603.01.T01:CDS
CTGCATGGCGAAGAACGAAT+GGG 0.515871 5:+21119534 MsG0580025603.01.T01:CDS
TCGAGTCCAAAGTATCTAAG+AGG 0.516519 5:-21119976 None:intergenic
GTCTCATGGAAAACTTGTAA+TGG 0.519845 5:+21120357 MsG0580025603.01.T01:CDS
ATCCAAACAAGGCCTTTGGT+TGG 0.532747 5:+21119258 MsG0580025603.01.T01:CDS
CTTGGATTACTAAAGTCTCA+TGG 0.536469 5:+21120343 MsG0580025603.01.T01:CDS
TCTGCATGGCGAAGAACGAA+TGG 0.536596 5:+21119533 MsG0580025603.01.T01:CDS
GCAGGGAGAAAGCTGGTAGC+CGG 0.543654 5:+21120577 MsG0580025603.01.T01:intron
TCGGTGTTGTTGGTCTTGGT+GGG 0.546049 5:+21120016 MsG0580025603.01.T01:CDS
GTTGGTATAGTGACAAAGGT+GGG 0.549964 5:+21119679 MsG0580025603.01.T01:CDS
TGGGCAGCTAGAGACACATC+TGG 0.550336 5:+21119278 MsG0580025603.01.T01:CDS
ACAGGAACGACTTCAATGTC+AGG 0.550360 5:-21120667 None:intergenic
ACCCAAAATTAAAGGAAAGA+CGG 0.568562 5:-21120410 None:intergenic
TACGTGGTTCACATTCCTGA+TGG 0.574374 5:+21119898 MsG0580025603.01.T01:CDS
GTCTCTAGCTGCCCAACCAA+AGG 0.577379 5:-21119270 None:intergenic
TACTTTGGACTCGACAAACC+TGG 0.577584 5:+21119985 MsG0580025603.01.T01:CDS
ATTGGTGCCAAGCATCGTGA+TGG 0.582249 5:+21119826 MsG0580025603.01.T01:CDS
GTTGGAGACAAAGTAGGTGT+TGG 0.583429 5:+21119724 MsG0580025603.01.T01:CDS
CATGGAAAACTTGTAATGGT+TGG 0.586324 5:+21120361 MsG0580025603.01.T01:CDS
GATGGTTCCATCACGATGCT+TGG 0.587249 5:-21119833 None:intergenic
TTCAATGTTGGAGACAAAGT+AGG 0.588338 5:+21119718 MsG0580025603.01.T01:CDS
AAGGAAGCAAAAGAACACTT+AGG 0.590978 5:+21120117 MsG0580025603.01.T01:CDS
AAGTGGAATTGGAAGCATCA+AGG 0.592918 5:+21120600 MsG0580025603.01.T01:CDS
ATTATCGGCAGGGAGAAAGC+TGG 0.593426 5:+21120570 MsG0580025603.01.T01:intron
AGAACATACCCCGGAACTAG+TGG 0.597931 5:-21119571 None:intergenic
CGTGATGGAACCATCACATA+CGG 0.603134 5:+21119841 MsG0580025603.01.T01:CDS
GACTTTAGTAATCCAAGTAG+TGG 0.603416 5:-21120337 None:intergenic
AGAATAACCTCCGTATGTGA+TGG 0.606221 5:-21119851 None:intergenic
TGTTGGTATAGTGACAAAGG+TGG 0.606925 5:+21119678 MsG0580025603.01.T01:CDS
CAATTGTAGTAGTGTATTTG+GGG 0.619152 5:-21119807 None:intergenic
TGACATTGAAGTCGTTCCTG+TGG 0.621293 5:+21120669 MsG0580025603.01.T01:CDS
TCGTGACCAAGATAAAATGC+AGG 0.622175 5:+21120161 MsG0580025603.01.T01:CDS
CCTTCTTGAGAAGTTGAAAG+GGG 0.624053 5:-21119309 None:intergenic
GTGATCCCAGCACAAAGGAG+AGG 0.625373 5:-21119943 None:intergenic
GCATTCAAAATATTGTATTG+TGG 0.625490 5:+21119493 MsG0580025603.01.T01:CDS
TCTGCACTAGGTACTTTGGA+TGG 0.633602 5:+21120277 MsG0580025603.01.T01:CDS
ATACCCCGGAACTAGTGGAT+AGG 0.638219 5:-21119566 None:intergenic
AGAGGTGCAGCAGCTTCAAG+TGG 0.642094 5:-21119925 None:intergenic
ATGTCACTCAGATGTCTGCA+TGG 0.642700 5:+21119519 MsG0580025603.01.T01:CDS
GCTGTGTTAACATAATCCAC+AGG 0.647825 5:-21120685 None:intergenic
GGAAAGACGGGGATCTCCAG+AGG 0.652974 5:-21120397 None:intergenic
TGCATGGCGAAGAACGAATG+GGG 0.656200 5:+21119535 MsG0580025603.01.T01:CDS
GATTGTTGGTATAGTGACAA+AGG 0.656994 5:+21119675 MsG0580025603.01.T01:CDS
CAACCTATCCACTAGTTCCG+GGG 0.659512 5:+21119563 MsG0580025603.01.T01:CDS
ACAACACCGATATGAAGACC+AGG 0.677179 5:-21120003 None:intergenic
CCAAAATTAAAGGAAAGACG+GGG 0.687666 5:-21120408 None:intergenic
TGAATTTGAACATCCAAACA+AGG 0.697834 5:+21119247 MsG0580025603.01.T01:CDS
ACACAGTGATCCCAGCACAA+AGG 0.705727 5:-21119948 None:intergenic
GATGGAACCATCACATACGG+AGG 0.744602 5:+21119844 MsG0580025603.01.T01:CDS
GGTTGCGGATGAGAACTACG+TGG 0.814100 5:+21119882 MsG0580025603.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTTAAATAAGAAATAC+AGG + Chr5:21119647-21119666 MsG0580025603.01.T01:intron 10.0%
!! AAAAAAAAAAAAAAGTGAAG+TGG - Chr5:21119347-21119366 None:intergenic 15.0%
!! TAGTTCAATATTCTATTATA+CGG + Chr5:21120195-21120214 MsG0580025603.01.T01:intron 15.0%
!! CAAATCAAAATAGTAGAAAA+TGG - Chr5:21119624-21119643 None:intergenic 20.0%
!! TTAATCATATAAGTGATCTA+TGG - Chr5:21120463-21120482 None:intergenic 20.0%
!! TTTATGATGCTAACAATTAT+CGG + Chr5:21120555-21120574 MsG0580025603.01.T01:intron 20.0%
!!! TTAAGAGTAAAATTGTTGTT+AGG + Chr5:21119409-21119428 MsG0580025603.01.T01:intron 20.0%
! AAAGTAGAAAAGTTCAATGT+TGG + Chr5:21119706-21119725 MsG0580025603.01.T01:CDS 25.0%
! AATTTAATTAGAACATACCC+CGG - Chr5:21119583-21119602 None:intergenic 25.0%
! GCATTCAAAATATTGTATTG+TGG + Chr5:21119493-21119512 MsG0580025603.01.T01:CDS 25.0%
! TAATTAGTTCACGAATTGAT+TGG - Chr5:21120239-21120258 None:intergenic 25.0%
ACCAATTGTAGTAGTGTATT+TGG - Chr5:21119812-21119831 None:intergenic 30.0%
ACCCAAAATTAAAGGAAAGA+CGG - Chr5:21120413-21120432 None:intergenic 30.0%
CAATTGTAGTAGTGTATTTG+GGG - Chr5:21119810-21119829 None:intergenic 30.0%
CCAATTGTAGTAGTGTATTT+GGG - Chr5:21119811-21119830 None:intergenic 30.0%
TGAATTTGAACATCCAAACA+AGG + Chr5:21119247-21119266 MsG0580025603.01.T01:CDS 30.0%
TTGTTTGGATGTTCAAATTC+AGG - Chr5:21119248-21119267 None:intergenic 30.0%
! TTTGTACCTGCATTTTATCT+TGG - Chr5:21120170-21120189 None:intergenic 30.0%
!! ATGTTTTTATAGTCTGCACT+AGG + Chr5:21120265-21120284 MsG0580025603.01.T01:intron 30.0%
!! TGAAAGTTTTGACACATCAA+AGG - Chr5:21119450-21119469 None:intergenic 30.0%
AAATACAGGCATGAGATTGT+TGG + Chr5:21119661-21119680 MsG0580025603.01.T01:intron 35.0%
AACCTTCTTGAGAAGTTGAA+AGG - Chr5:21119314-21119333 None:intergenic 35.0%
AAGGAAGCAAAAGAACACTT+AGG + Chr5:21120117-21120136 MsG0580025603.01.T01:CDS 35.0%
ACCTTCTTGAGAAGTTGAAA+GGG - Chr5:21119313-21119332 None:intergenic 35.0%
AGAAACAGGTGAAAAAGATG+TGG + Chr5:21119471-21119490 MsG0580025603.01.T01:CDS 35.0%
CATGGAAAACTTGTAATGGT+TGG + Chr5:21120361-21120380 MsG0580025603.01.T01:CDS 35.0%
CCAAAATTAAAGGAAAGACG+GGG - Chr5:21120411-21120430 None:intergenic 35.0%
CCCAAAATTAAAGGAAAGAC+GGG - Chr5:21120412-21120431 None:intergenic 35.0%
CCCAAATACACTACTACAAT+TGG + Chr5:21119808-21119827 MsG0580025603.01.T01:CDS 35.0%
CTTGGATTACTAAAGTCTCA+TGG + Chr5:21120343-21120362 MsG0580025603.01.T01:CDS 35.0%
GACTTTAGTAATCCAAGTAG+TGG - Chr5:21120340-21120359 None:intergenic 35.0%
GATATTTGACATCTGCTTTG+AGG - Chr5:21120723-21120742 None:intergenic 35.0%
GATTGTTGGTATAGTGACAA+AGG + Chr5:21119675-21119694 MsG0580025603.01.T01:CDS 35.0%
GCTAGCAGATGTACTAATTA+CGG - Chr5:21120091-21120110 None:intergenic 35.0%
GTCAAAACTTTCAGAGAAAC+AGG + Chr5:21119457-21119476 MsG0580025603.01.T01:intron 35.0%
GTCTCATGGAAAACTTGTAA+TGG + Chr5:21120357-21120376 MsG0580025603.01.T01:CDS 35.0%
TACAGTCCTCTTAGATACTT+TGG + Chr5:21119970-21119989 MsG0580025603.01.T01:CDS 35.0%
TACATCTGCTAGCAAAGAAA+AGG + Chr5:21120098-21120117 MsG0580025603.01.T01:CDS 35.0%
TTCAATGTTGGAGACAAAGT+AGG + Chr5:21119718-21119737 MsG0580025603.01.T01:CDS 35.0%
! GCTAGCTTACCCAAAATTAA+AGG - Chr5:21120421-21120440 None:intergenic 35.0%
! GTGAAATTTGCCAAAGCTTT+TGG + Chr5:21120054-21120073 MsG0580025603.01.T01:CDS 35.0%
! TTATTCTGACTCATTGGTTG+CGG + Chr5:21119867-21119886 MsG0580025603.01.T01:CDS 35.0%
!! CCCGTCTTTCCTTTAATTTT+GGG + Chr5:21120409-21120428 MsG0580025603.01.T01:CDS 35.0%
!! GATAGGATGATTTGCTGAAA+CGG - Chr5:21120314-21120333 None:intergenic 35.0%
AATCCAAGTAGTGGCAAGAT+AGG - Chr5:21120331-21120350 None:intergenic 40.0%
AGAATAACCTCCGTATGTGA+TGG - Chr5:21119854-21119873 None:intergenic 40.0%
ATAGTCTGCACTAGGTACTT+TGG + Chr5:21120273-21120292 MsG0580025603.01.T01:intron 40.0%
ATCAACCTATCCACTAGTTC+CGG + Chr5:21119561-21119580 MsG0580025603.01.T01:CDS 40.0%
CACATTAGCACCAAAAGCTT+TGG - Chr5:21120067-21120086 None:intergenic 40.0%
CCTTCTTGAGAAGTTGAAAG+GGG - Chr5:21119312-21119331 None:intergenic 40.0%
GATGCTAACAATTATCGGCA+GGG + Chr5:21120560-21120579 MsG0580025603.01.T01:intron 40.0%
GCTGTGTTAACATAATCCAC+AGG - Chr5:21120688-21120707 None:intergenic 40.0%
GTTGGTATAGTGACAAAGGT+GGG + Chr5:21119679-21119698 MsG0580025603.01.T01:CDS 40.0%
TCGTGACCAAGATAAAATGC+AGG + Chr5:21120161-21120180 MsG0580025603.01.T01:CDS 40.0%
TGATGCTAACAATTATCGGC+AGG + Chr5:21120559-21120578 MsG0580025603.01.T01:intron 40.0%
TGTTGGTATAGTGACAAAGG+TGG + Chr5:21119678-21119697 MsG0580025603.01.T01:CDS 40.0%
! GACAAACCTGGTCTTCATAT+CGG + Chr5:21119997-21120016 MsG0580025603.01.T01:CDS 40.0%
! TCGAGTCCAAAGTATCTAAG+AGG - Chr5:21119979-21119998 None:intergenic 40.0%
!! AAGTGGAATTGGAAGCATCA+AGG + Chr5:21120600-21120619 MsG0580025603.01.T01:CDS 40.0%
!! CCCCGTCTTTCCTTTAATTT+TGG + Chr5:21120408-21120427 MsG0580025603.01.T01:CDS 40.0%
!! TATCGATTTGTGCTCGACAT+TGG + Chr5:21120739-21120758 MsG0580025603.01.T01:CDS 40.0%
ACAACACCGATATGAAGACC+AGG - Chr5:21120006-21120025 None:intergenic 45.0%
ACAGGAACGACTTCAATGTC+AGG - Chr5:21120670-21120689 None:intergenic 45.0%
ATCCAAACAAGGCCTTTGGT+TGG + Chr5:21119258-21119277 MsG0580025603.01.T01:CDS 45.0%
ATGTCACTCAGATGTCTGCA+TGG + Chr5:21119519-21119538 MsG0580025603.01.T01:CDS 45.0%
CATCCTATCTTGCCACTACT+TGG + Chr5:21120325-21120344 MsG0580025603.01.T01:CDS 45.0%
CCCCTTTCAACTTCTCAAGA+AGG + Chr5:21119309-21119328 MsG0580025603.01.T01:CDS 45.0%
CGGAGGTTATTCTGACTCAT+TGG + Chr5:21119861-21119880 MsG0580025603.01.T01:CDS 45.0%
GAACATCCAAACAAGGCCTT+TGG + Chr5:21119254-21119273 MsG0580025603.01.T01:CDS 45.0%
GATGCTTCCAATTCCACTTC+CGG - Chr5:21120599-21120618 None:intergenic 45.0%
GTTGGAGACAAAGTAGGTGT+TGG + Chr5:21119724-21119743 MsG0580025603.01.T01:CDS 45.0%
TACGTGGTTCACATTCCTGA+TGG + Chr5:21119898-21119917 MsG0580025603.01.T01:CDS 45.0%
TACTTTGGACTCGACAAACC+TGG + Chr5:21119985-21120004 MsG0580025603.01.T01:CDS 45.0%
TCAACCTATCCACTAGTTCC+GGG + Chr5:21119562-21119581 MsG0580025603.01.T01:CDS 45.0%
TCCAAACAAGGCCTTTGGTT+GGG + Chr5:21119259-21119278 MsG0580025603.01.T01:CDS 45.0%
TCTGCACTAGGTACTTTGGA+TGG + Chr5:21120277-21120296 MsG0580025603.01.T01:CDS 45.0%
TGACATTGAAGTCGTTCCTG+TGG + Chr5:21120669-21120688 MsG0580025603.01.T01:CDS 45.0%
! CGTGATGGAACCATCACATA+CGG + Chr5:21119841-21119860 MsG0580025603.01.T01:CDS 45.0%
!! CATATCGGTGTTGTTGGTCT+TGG + Chr5:21120012-21120031 MsG0580025603.01.T01:CDS 45.0%
!! GGTCTTCATATCGGTGTTGT+TGG + Chr5:21120006-21120025 MsG0580025603.01.T01:CDS 45.0%
ACACAGTGATCCCAGCACAA+AGG - Chr5:21119951-21119970 None:intergenic 50.0%
AGAACATACCCCGGAACTAG+TGG - Chr5:21119574-21119593 None:intergenic 50.0%
ATTATCGGCAGGGAGAAAGC+TGG + Chr5:21120570-21120589 MsG0580025603.01.T01:intron 50.0%
CAACCTATCCACTAGTTCCG+GGG + Chr5:21119563-21119582 MsG0580025603.01.T01:CDS 50.0%
CTGCATGGCGAAGAACGAAT+GGG + Chr5:21119534-21119553 MsG0580025603.01.T01:CDS 50.0%
GATGGAACCATCACATACGG+AGG + Chr5:21119844-21119863 MsG0580025603.01.T01:CDS 50.0%
GATGGTTCCATCACGATGCT+TGG - Chr5:21119836-21119855 None:intergenic 50.0%
GCTTCAAGTGGTAAGCCATC+AGG - Chr5:21119916-21119935 None:intergenic 50.0%
TCTGCATGGCGAAGAACGAA+TGG + Chr5:21119533-21119552 MsG0580025603.01.T01:CDS 50.0%
TGCATGGCGAAGAACGAATG+GGG + Chr5:21119535-21119554 MsG0580025603.01.T01:CDS 50.0%
! ATACCCCGGAACTAGTGGAT+AGG - Chr5:21119569-21119588 None:intergenic 50.0%
!! ATCGGTGTTGTTGGTCTTGG+TGG + Chr5:21120015-21120034 MsG0580025603.01.T01:CDS 50.0%
!! ATTGGTGCCAAGCATCGTGA+TGG + Chr5:21119826-21119845 MsG0580025603.01.T01:CDS 50.0%
!! TCGGTGTTGTTGGTCTTGGT+GGG + Chr5:21120016-21120035 MsG0580025603.01.T01:CDS 50.0%
AGAAAGCTGGTAGCCGGAAG+TGG + Chr5:21120583-21120602 MsG0580025603.01.T01:CDS 55.0%
CTGCACCTCTCCTTTGTGCT+GGG + Chr5:21119938-21119957 MsG0580025603.01.T01:CDS 55.0%
CTGGTAGCCGGAAGTGGAAT+TGG + Chr5:21120589-21120608 MsG0580025603.01.T01:CDS 55.0%
GGTTGCGGATGAGAACTACG+TGG + Chr5:21119882-21119901 MsG0580025603.01.T01:CDS 55.0%
GTCTCTAGCTGCCCAACCAA+AGG - Chr5:21119273-21119292 None:intergenic 55.0%
GTGATCCCAGCACAAAGGAG+AGG - Chr5:21119946-21119965 None:intergenic 55.0%
TGGGCAGCTAGAGACACATC+TGG + Chr5:21119278-21119297 MsG0580025603.01.T01:CDS 55.0%
TGGTGTACCTGACAAGCCTC+TGG + Chr5:21120381-21120400 MsG0580025603.01.T01:CDS 55.0%
! AGAGGTGCAGCAGCTTCAAG+TGG - Chr5:21119928-21119947 None:intergenic 55.0%
!! GCCCAACCAAAGGCCTTGTT+TGG - Chr5:21119263-21119282 None:intergenic 55.0%
!! GTTGTTGGTCTTGGTGGGCT+TGG + Chr5:21120021-21120040 MsG0580025603.01.T01:CDS 55.0%
!! TCTTGGTGGGCTTGGTCACA+TGG + Chr5:21120029-21120048 MsG0580025603.01.T01:CDS 55.0%
GCAGGGAGAAAGCTGGTAGC+CGG + Chr5:21120577-21120596 MsG0580025603.01.T01:intron 60.0%
GCTGCACCTCTCCTTTGTGC+TGG + Chr5:21119937-21119956 MsG0580025603.01.T01:CDS 60.0%
GGAAAGACGGGGATCTCCAG+AGG - Chr5:21120400-21120419 None:intergenic 60.0%
GGGATCTCCAGAGGCTTGTC+AGG - Chr5:21120391-21120410 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr5 gene 21119233 21120786 21119233 ID=MsG0580025603.01;Name=MsG0580025603.01
Chr5 mRNA 21119233 21120786 21119233 ID=MsG0580025603.01.T01;Parent=MsG0580025603.01;Name=MsG0580025603.01.T01;_AED=0.25;_eAED=0.25;_QI=0|0|0|1|1|1|5|0|361
Chr5 exon 21119233 21119330 21119233 ID=MsG0580025603.01.T01:exon:9039;Parent=MsG0580025603.01.T01
Chr5 exon 21119471 21119584 21119471 ID=MsG0580025603.01.T01:exon:9040;Parent=MsG0580025603.01.T01
Chr5 exon 21119669 21120182 21119669 ID=MsG0580025603.01.T01:exon:9041;Parent=MsG0580025603.01.T01
Chr5 exon 21120277 21120430 21120277 ID=MsG0580025603.01.T01:exon:9042;Parent=MsG0580025603.01.T01
Chr5 exon 21120581 21120786 21120581 ID=MsG0580025603.01.T01:exon:9043;Parent=MsG0580025603.01.T01
Chr5 CDS 21119233 21119330 21119233 ID=MsG0580025603.01.T01:cds;Parent=MsG0580025603.01.T01
Chr5 CDS 21119471 21119584 21119471 ID=MsG0580025603.01.T01:cds;Parent=MsG0580025603.01.T01
Chr5 CDS 21119669 21120182 21119669 ID=MsG0580025603.01.T01:cds;Parent=MsG0580025603.01.T01
Chr5 CDS 21120277 21120430 21120277 ID=MsG0580025603.01.T01:cds;Parent=MsG0580025603.01.T01
Chr5 CDS 21120581 21120786 21120581 ID=MsG0580025603.01.T01:cds;Parent=MsG0580025603.01.T01
Gene Sequence

>MsG0580025603.01.T01

ATGGCAACACAACCTGAATTTGAACATCCAAACAAGGCCTTTGGTTGGGCAGCTAGAGACACATCTGGTGTTCTCTCCCCTTTCAACTTCTCAAGAAGAGAAACAGGTGAAAAAGATGTGGCATTCAAAATATTGTATTGTGGAATATGTCACTCAGATGTCTGCATGGCGAAGAACGAATGGGGCATATCAACCTATCCACTAGTTCCGGGGCATGAGATTGTTGGTATAGTGACAAAGGTGGGAAGCAAAGTAGAAAAGTTCAATGTTGGAGACAAAGTAGGTGTTGGCTACATAATTGATTCATGTCGATCGTGTCAAAATTGTGTTGACAATCTTGAAAATTACTGCCCCAAATACACTACTACAATTGGTGCCAAGCATCGTGATGGAACCATCACATACGGAGGTTATTCTGACTCATTGGTTGCGGATGAGAACTACGTGGTTCACATTCCTGATGGCTTACCACTTGAAGCTGCTGCACCTCTCCTTTGTGCTGGGATCACTGTGTACAGTCCTCTTAGATACTTTGGACTCGACAAACCTGGTCTTCATATCGGTGTTGTTGGTCTTGGTGGGCTTGGTCACATGGCTGTGAAATTTGCCAAAGCTTTTGGTGCTAATGTGACCGTAATTAGTACATCTGCTAGCAAAGAAAAGGAAGCAAAAGAACACTTAGGAGCTGATTCATTTCTGATAAGTCGTGACCAAGATAAAATGCAGTCTGCACTAGGTACTTTGGATGGTATCATTGATACCGTTTCAGCAAATCATCCTATCTTGCCACTACTTGGATTACTAAAGTCTCATGGAAAACTTGTAATGGTTGGTGTACCTGACAAGCCTCTGGAGATCCCCGTCTTTCCTTTAATTTTGGGGAGAAAGCTGGTAGCCGGAAGTGGAATTGGAAGCATCAAGGAGACTCAAGAGATGCTTGACTTTGCTGCTAAACACAATGTAAAACCTGACATTGAAGTCGTTCCTGTGGATTATGTTAACACAGCAATTGAACGACTCCTCAAAGCAGATGTCAAATATCGATTTGTGCTCGACATTGGAAACACTCTGAAACCAAGTTCTTAA
Protein sequence

>MsG0580025603.01.T01

MATQPEFEHPNKAFGWAARDTSGVLSPFNFSRRETGEKDVAFKILYCGICHSDVCMAKNEWGISTYPLVPGHEIVGIVTKVGSKVEKFNVGDKVGVGYIIDSCRSCQNCVDNLENYCPKYTTTIGAKHRDGTITYGGYSDSLVADENYVVHIPDGLPLEAAAPLLCAGITVYSPLRYFGLDKPGLHIGVVGLGGLGHMAVKFAKAFGANVTVISTSASKEKEAKEHLGADSFLISRDQDKMQSALGTLDGIIDTVSANHPILPLLGLLKSHGKLVMVGVPDKPLEIPVFPLILGRKLVAGSGIGSIKETQEMLDFAAKHNVKPDIEVVPVDYVNTAIERLLKADVKYRFVLDIGNTLKPSS*