Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025847.01.T01 | XP_003613337.1 | 97.11 | 173 | 5 | 0 | 1 | 173 | 1 | 173 | 2.25E-122 | 352 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025847.01.T01 | B7FHE1 | 97.110 | 173 | 5 | 0 | 1 | 173 | 1 | 173 | 1.08e-122 | 352 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0380011739.01 | MsG0580025847.01 | 0.802067 | 6.688114e-49 | 3.245350e-46 |
| MsG0480023264.01 | MsG0580025847.01 | 0.803021 | 4.252595e-49 | 2.114158e-46 |
| MsG0480023298.01 | MsG0580025847.01 | 0.825260 | 5.164547e-54 | 4.683758e-51 |
| MsG0580024385.01 | MsG0580025847.01 | 0.804747 | 1.862113e-49 | 9.678703e-47 |
| MsG0580024836.01 | MsG0580025847.01 | 0.807988 | 3.861781e-50 | 2.182057e-47 |
| MsG0580025847.01 | MsG0880042006.01 | 0.802009 | 6.875621e-49 | 3.331333e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025847.01.T01 | MTR_5g035430 | 97.110 | 173 | 5 | 0 | 1 | 173 | 1 | 173 | 2.73e-126 | 352 |
| MsG0580025847.01.T01 | MTR_8g063200 | 61.143 | 175 | 57 | 6 | 1 | 169 | 1 | 170 | 3.86e-60 | 184 |
| MsG0580025847.01.T01 | MTR_3g078300 | 45.000 | 180 | 88 | 3 | 1 | 169 | 1 | 180 | 2.70e-45 | 147 |
| MsG0580025847.01.T01 | MTR_4g106790 | 45.161 | 186 | 85 | 5 | 1 | 170 | 1 | 185 | 2.38e-41 | 137 |
| MsG0580025847.01.T01 | MTR_3g078300 | 48.611 | 144 | 55 | 4 | 1 | 125 | 1 | 144 | 9.75e-36 | 123 |
| MsG0580025847.01.T01 | MTR_4g106790 | 54.386 | 114 | 39 | 2 | 1 | 101 | 1 | 114 | 3.88e-33 | 115 |
| MsG0580025847.01.T01 | MTR_4g097220 | 38.418 | 177 | 89 | 5 | 1 | 169 | 1 | 165 | 9.05e-29 | 104 |
| MsG0580025847.01.T01 | MTR_4g097220 | 45.545 | 101 | 50 | 1 | 1 | 101 | 1 | 96 | 1.62e-25 | 95.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025847.01.T01 | AT1G60010 | 58.192 | 177 | 61 | 5 | 1 | 170 | 1 | 171 | 2.84e-56 | 175 |
| MsG0580025847.01.T01 | AT1G10530 | 50.279 | 179 | 65 | 3 | 1 | 170 | 1 | 164 | 9.99e-51 | 160 |
| MsG0580025847.01.T01 | AT5G62900 | 42.941 | 170 | 86 | 3 | 1 | 170 | 1 | 159 | 1.35e-37 | 127 |
| MsG0580025847.01.T01 | AT5G50090 | 47.647 | 170 | 73 | 4 | 1 | 169 | 1 | 155 | 2.08e-37 | 126 |
| MsG0580025847.01.T01 | AT5G50090 | 46.471 | 170 | 69 | 3 | 1 | 169 | 1 | 149 | 1.02e-36 | 124 |
| MsG0580025847.01.T01 | AT5G50090 | 54.386 | 114 | 51 | 1 | 1 | 113 | 1 | 114 | 5.37e-32 | 112 |
| MsG0580025847.01.T01 | AT5G67620 | 34.211 | 190 | 92 | 6 | 1 | 169 | 1 | 178 | 2.75e-28 | 103 |
Find 58 sgRNAs with CRISPR-Local
Find 98 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCCTTCTCTTCTTCTCTA+TGG | 0.171567 | 5:-25029980 | MsG0580025847.01.T01:exon |
| TGTTGGATGTTCCTGTTAAA+TGG | 0.225746 | 5:-25028445 | MsG0580025847.01.T01:three_prime_UTR |
| AATTTGCATGATTACACTTT+TGG | 0.268435 | 5:+25028519 | None:intergenic |
| AGAAGGAAGATGATGAAAAT+TGG | 0.290700 | 5:+25029994 | None:intergenic |
| TTTCATTATTCCCATTTAAC+AGG | 0.294216 | 5:+25028434 | None:intergenic |
| ATAACCTCACTAGCAGTTAC+TGG | 0.357775 | 5:+25029883 | None:intergenic |
| TGATTCTGTTCTTGAGGTTG+AGG | 0.377382 | 5:+25029814 | None:intergenic |
| TTCCTTCTCTTCTTCTCTAT+GGG | 0.379373 | 5:-25029979 | MsG0580025847.01.T01:exon |
| AAGATAGAAAAGGAAGGTTC+AGG | 0.406399 | 5:-25029306 | MsG0580025847.01.T01:CDS |
| CCAAGATTAAGAGTTTCATT+AGG | 0.415985 | 5:+25029748 | None:intergenic |
| CCTAATGAAACTCTTAATCT+TGG | 0.427563 | 5:-25029748 | MsG0580025847.01.T01:CDS |
| TGACCAAGGAAAGACATATC+AGG | 0.444489 | 5:-25029256 | MsG0580025847.01.T01:intron |
| CCCACAAATATAGTAAAATC+AGG | 0.452653 | 5:+25030103 | None:intergenic |
| TGGTTGTTGAAGAGAAATCT+TGG | 0.459868 | 5:+25028393 | None:intergenic |
| TGTGATTATAGAGGTTATGA+AGG | 0.465508 | 5:-25029382 | MsG0580025847.01.T01:intron |
| TTACTCGTGTTAAGTTGCTT+AGG | 0.467614 | 5:-25029771 | MsG0580025847.01.T01:CDS |
| GTTGGATGTTCCTGTTAAAT+GGG | 0.467837 | 5:-25028444 | MsG0580025847.01.T01:three_prime_UTR |
| CTGTACAGCAGCAGGATTTG+TGG | 0.468422 | 5:+25028587 | None:intergenic |
| GAGAGACACAAGCAAAGGTC+AGG | 0.471000 | 5:-25028615 | MsG0580025847.01.T01:CDS |
| TTTGACCTCTGTACAGCAGC+AGG | 0.477278 | 5:+25028579 | None:intergenic |
| CTGTACAGAGGTCAAAATCC+TGG | 0.477961 | 5:-25028572 | MsG0580025847.01.T01:CDS |
| AGAAACATAGTGACCAGGAT+TGG | 0.483314 | 5:+25029855 | None:intergenic |
| TCTTGAGGTTGAGGAGGTAA+TGG | 0.483728 | 5:+25029823 | None:intergenic |
| TGATCTTGATTCTGTTCTTG+AGG | 0.494312 | 5:+25029808 | None:intergenic |
| AGATGCAGTGAAGATAGAAA+AGG | 0.495514 | 5:-25029316 | MsG0580025847.01.T01:CDS |
| ATTTGTGATATGATGAATAG+TGG | 0.496091 | 5:-25028499 | MsG0580025847.01.T01:three_prime_UTR |
| TATAGACTCATCACTAATCA+AGG | 0.498667 | 5:-25029718 | MsG0580025847.01.T01:intron |
| ATACCTGATATGTCTTTCCT+TGG | 0.503735 | 5:+25029253 | None:intergenic |
| CTCTGAAATGCTTTGTAAAG+AGG | 0.505252 | 5:+25028545 | None:intergenic |
| GCTTTGTAAAGAGGGGCGCC+AGG | 0.510677 | 5:+25028554 | None:intergenic |
| GATGATGAAAATTGGAGAGA+GGG | 0.514079 | 5:+25030002 | None:intergenic |
| CTATCTTCCCACATGGATGT+TGG | 0.520455 | 5:+25029920 | None:intergenic |
| TTTGACTGCCTCTAAAATGT+TGG | 0.522279 | 5:-25028462 | MsG0580025847.01.T01:three_prime_UTR |
| GGAAGATAGATAGATTGTAT+TGG | 0.522565 | 5:-25029906 | MsG0580025847.01.T01:CDS |
| AGATGATGAAAATTGGAGAG+AGG | 0.531977 | 5:+25030001 | None:intergenic |
| GAGGTTATGAAAACCAATCC+TGG | 0.539177 | 5:-25029868 | MsG0580025847.01.T01:CDS |
| TTCCCATAGAGAAGAAGAGA+AGG | 0.540213 | 5:+25029977 | None:intergenic |
| AGTAAAATCAGGTTCTAAAG+AGG | 0.540426 | 5:+25030114 | None:intergenic |
| TTCTGTTCTTGAGGTTGAGG+AGG | 0.540454 | 5:+25029817 | None:intergenic |
| TCAGGTTGTGAGACAAAGAA+AGG | 0.559747 | 5:-25029288 | MsG0580025847.01.T01:CDS |
| TCTGAAATGCTTTGTAAAGA+GGG | 0.566420 | 5:+25028546 | None:intergenic |
| TTCAACAACCATGATTCAGT+TGG | 0.567964 | 5:-25028381 | MsG0580025847.01.T01:three_prime_UTR |
| AGACACAAGCAAAGGTCAGG+AGG | 0.568389 | 5:-25028612 | MsG0580025847.01.T01:CDS |
| TGCAAAGAGTATGAAGACAG+AGG | 0.574703 | 5:-25029340 | MsG0580025847.01.T01:CDS |
| GCAAAGAGTATGAAGACAGA+GGG | 0.592093 | 5:-25029339 | MsG0580025847.01.T01:CDS |
| GAATAATGAAAATTTAACTG+AGG | 0.593332 | 5:-25028422 | MsG0580025847.01.T01:three_prime_UTR |
| AAAATCAGGTTCTAAAGAGG+TGG | 0.607265 | 5:+25030117 | None:intergenic |
| ATCAAAGAAACATAGTGACC+AGG | 0.610006 | 5:+25029850 | None:intergenic |
| GAGCAGAGAGACACAAGCAA+AGG | 0.610331 | 5:-25028620 | MsG0580025847.01.T01:CDS |
| GACACAAGCAAAGGTCAGGA+GGG | 0.617560 | 5:-25028611 | MsG0580025847.01.T01:CDS |
| TTGGCCAGTAACTGCTAGTG+AGG | 0.628222 | 5:-25029887 | MsG0580025847.01.T01:CDS |
| CAAATCCTGCTGCTGTACAG+AGG | 0.644610 | 5:-25028584 | MsG0580025847.01.T01:CDS |
| CTGAAATGCTTTGTAAAGAG+GGG | 0.651166 | 5:+25028547 | None:intergenic |
| TTGTGATCCAACATCCATGT+GGG | 0.656782 | 5:-25029927 | MsG0580025847.01.T01:CDS |
| AATCTATCTATCTTCCCACA+TGG | 0.661064 | 5:+25029913 | None:intergenic |
| AAAGGAGAAGAATCTGACCA+AGG | 0.665656 | 5:-25029270 | MsG0580025847.01.T01:CDS |
| GCAGTGAAGATAGAAAAGGA+AGG | 0.703241 | 5:-25029312 | MsG0580025847.01.T01:CDS |
| CTTGTGATCCAACATCCATG+TGG | 0.727069 | 5:-25029928 | MsG0580025847.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATTGTTCAAAATTT+AGG | + | Chr5:25029545-25029564 | None:intergenic | 10.0% |
| !! | CTTATATTAAAAATAAAATG+TGG | + | Chr5:25028895-25028914 | None:intergenic | 10.0% |
| !! | ATTTAGGAATATAATTCATT+TGG | + | Chr5:25029529-25029548 | None:intergenic | 15.0% |
| !! | TCATAGTATAATATTAATCA+TGG | + | Chr5:25029288-25029307 | None:intergenic | 15.0% |
| !! | TTATGAAAATAAATTGAATG+CGG | - | Chr5:25029700-25029719 | MsG0580025847.01.T01:intron | 15.0% |
| !! | AGAAATTCAATTCACAATTT+CGG | + | Chr5:25029001-25029020 | None:intergenic | 20.0% |
| !! | AGTATAATATTAATCATGGA+AGG | + | Chr5:25029284-25029303 | None:intergenic | 20.0% |
| !! | GAATAATGAAAATTTAACTG+AGG | - | Chr5:25030038-25030057 | MsG0580025847.01.T01:five_prime_UTR | 20.0% |
| !! | GTATAATATTAATCATGGAA+GGG | + | Chr5:25029283-25029302 | None:intergenic | 20.0% |
| !! | TGAAAAAAGAAAGAAAGAAA+AGG | + | Chr5:25029259-25029278 | None:intergenic | 20.0% |
| !! | TGTTATATTTGTGATTATAG+AGG | - | Chr5:25029069-25029088 | MsG0580025847.01.T01:intron | 20.0% |
| !!! | AGTTATTTTGATTAAGATTG+CGG | + | Chr5:25028937-25028956 | None:intergenic | 20.0% |
| !!! | TTTATTTTCATAAGCTTTTC+AGG | + | Chr5:25029693-25029712 | None:intergenic | 20.0% |
| ! | ATCAAGATCAAAAAACAGTT+AGG | - | Chr5:25028665-25028684 | MsG0580025847.01.T01:intron | 25.0% |
| ! | ATTGAAATTGCATGTCATAT+TGG | + | Chr5:25029440-25029459 | None:intergenic | 25.0% |
| ! | ATTTGTGATATGATGAATAG+TGG | - | Chr5:25029961-25029980 | MsG0580025847.01.T01:CDS | 25.0% |
| ! | TTTCATTATTCCCATTTAAC+AGG | + | Chr5:25030029-25030048 | None:intergenic | 25.0% |
| !! | AATTTGCATGATTACACTTT+TGG | + | Chr5:25029944-25029963 | None:intergenic | 25.0% |
| !! | ACCTGATTTTACTATATTTG+TGG | - | Chr5:25028356-25028375 | MsG0580025847.01.T01:three_prime_UTR | 25.0% |
| !! | CCTGATTTTACTATATTTGT+GGG | - | Chr5:25028357-25028376 | MsG0580025847.01.T01:three_prime_UTR | 25.0% |
| !! | CTACAATTTAGAACTATGAA+AGG | + | Chr5:25028778-25028797 | None:intergenic | 25.0% |
| !! | CTGATTTTACTATATTTGTG+GGG | - | Chr5:25028358-25028377 | MsG0580025847.01.T01:three_prime_UTR | 25.0% |
| AAAGTGCATAATGAATTCCA+GGG | - | Chr5:25029812-25029831 | MsG0580025847.01.T01:CDS | 30.0% | |
| AATTCAATTCACAATTTCGG+TGG | + | Chr5:25028998-25029017 | None:intergenic | 30.0% | |
| AGAAGGAAGATGATGAAAAT+TGG | + | Chr5:25028469-25028488 | None:intergenic | 30.0% | |
| CCAAGATTAAGAGTTTCATT+AGG | + | Chr5:25028715-25028734 | None:intergenic | 30.0% | |
| CCCACAAATATAGTAAAATC+AGG | + | Chr5:25028360-25028379 | None:intergenic | 30.0% | |
| CCTAATGAAACTCTTAATCT+TGG | - | Chr5:25028712-25028731 | MsG0580025847.01.T01:intron | 30.0% | |
| GGAAGATAGATAGATTGTAT+TGG | - | Chr5:25028554-25028573 | MsG0580025847.01.T01:CDS | 30.0% | |
| TAAAGTGCATAATGAATTCC+AGG | - | Chr5:25029811-25029830 | MsG0580025847.01.T01:CDS | 30.0% | |
| TATAGACTCATCACTAATCA+AGG | - | Chr5:25028742-25028761 | MsG0580025847.01.T01:intron | 30.0% | |
| TGAGTTAGGTCAAATTTCAA+CGG | - | Chr5:25028826-25028845 | MsG0580025847.01.T01:intron | 30.0% | |
| TGTGATTATAGAGGTTATGA+AGG | - | Chr5:25029078-25029097 | MsG0580025847.01.T01:intron | 30.0% | |
| ! | ACATTTTACCAACTGAATCA+TGG | + | Chr5:25030090-25030109 | None:intergenic | 30.0% |
| ! | TCTGAAATGCTTTGTAAAGA+GGG | + | Chr5:25029917-25029936 | None:intergenic | 30.0% |
| !! | AGTAAAATCAGGTTCTAAAG+AGG | + | Chr5:25028349-25028368 | None:intergenic | 30.0% |
| !! | TGATGTAAACACTTTTGAGA+CGG | + | Chr5:25029768-25029787 | None:intergenic | 30.0% |
| !! | TGTTTTCCTTGTAAAAGCAT+TGG | - | Chr5:25029463-25029482 | MsG0580025847.01.T01:intron | 30.0% |
| AAGATAGAAAAGGAAGGTTC+AGG | - | Chr5:25029154-25029173 | MsG0580025847.01.T01:intron | 35.0% | |
| AATCTATCTATCTTCCCACA+TGG | + | Chr5:25028550-25028569 | None:intergenic | 35.0% | |
| AGATGATGAAAATTGGAGAG+AGG | + | Chr5:25028462-25028481 | None:intergenic | 35.0% | |
| AGATGCAGTGAAGATAGAAA+AGG | - | Chr5:25029144-25029163 | MsG0580025847.01.T01:intron | 35.0% | |
| ATACCTGATATGTCTTTCCT+TGG | + | Chr5:25029210-25029229 | None:intergenic | 35.0% | |
| ATCAAAGAAACATAGTGACC+AGG | + | Chr5:25028613-25028632 | None:intergenic | 35.0% | |
| CATTATGCACTTTAGCATCA+TGG | + | Chr5:25029805-25029824 | None:intergenic | 35.0% | |
| CTGAAATGCTTTGTAAAGAG+GGG | + | Chr5:25029916-25029935 | None:intergenic | 35.0% | |
| GATGATGAAAATTGGAGAGA+GGG | + | Chr5:25028461-25028480 | None:intergenic | 35.0% | |
| GTTGGATGTTCCTGTTAAAT+GGG | - | Chr5:25030016-25030035 | MsG0580025847.01.T01:five_prime_UTR | 35.0% | |
| TGATCTTGATTCTGTTCTTG+AGG | + | Chr5:25028655-25028674 | None:intergenic | 35.0% | |
| TGGTTGTTGAAGAGAAATCT+TGG | + | Chr5:25030070-25030089 | None:intergenic | 35.0% | |
| TGTTGGATGTTCCTGTTAAA+TGG | - | Chr5:25030015-25030034 | MsG0580025847.01.T01:five_prime_UTR | 35.0% | |
| TTCAACAACCATGATTCAGT+TGG | - | Chr5:25030079-25030098 | MsG0580025847.01.T01:five_prime_UTR | 35.0% | |
| TTCCTTCTCTTCTTCTCTAT+GGG | - | Chr5:25028481-25028500 | MsG0580025847.01.T01:three_prime_UTR | 35.0% | |
| TTGTAGTCTGCAAAGTAGTT+CGG | - | Chr5:25028792-25028811 | MsG0580025847.01.T01:intron | 35.0% | |
| ! | AGGAACATCCAACATTTTAG+AGG | + | Chr5:25030009-25030028 | None:intergenic | 35.0% |
| ! | CTTCTCTTTTCTCTTCTTGA+TGG | + | Chr5:25030123-25030142 | None:intergenic | 35.0% |
| ! | TTACTCGTGTTAAGTTGCTT+AGG | - | Chr5:25028689-25028708 | MsG0580025847.01.T01:intron | 35.0% |
| !! | AAAATCAGGTTCTAAAGAGG+TGG | + | Chr5:25028346-25028365 | None:intergenic | 35.0% |
| !! | CTCTGAAATGCTTTGTAAAG+AGG | + | Chr5:25029918-25029937 | None:intergenic | 35.0% |
| !! | CTTTAAGTGCTGAATCTTAG+TGG | - | Chr5:25029396-25029415 | MsG0580025847.01.T01:intron | 35.0% |
| !! | TTTGACTGCCTCTAAAATGT+TGG | - | Chr5:25029998-25030017 | MsG0580025847.01.T01:five_prime_UTR | 35.0% |
| !!! | TAAACACTTTTGAGACGGTT+CGG | + | Chr5:25029763-25029782 | None:intergenic | 35.0% |
| AAAGGAGAAGAATCTGACCA+AGG | - | Chr5:25029190-25029209 | MsG0580025847.01.T01:intron | 40.0% | |
| AGAAACATAGTGACCAGGAT+TGG | + | Chr5:25028608-25028627 | None:intergenic | 40.0% | |
| AGGTCAAATTTCAACGGCTT+CGG | - | Chr5:25028832-25028851 | MsG0580025847.01.T01:intron | 40.0% | |
| ATAACCTCACTAGCAGTTAC+TGG | + | Chr5:25028580-25028599 | None:intergenic | 40.0% | |
| CTACCAAATCTCACATCACA+TGG | - | Chr5:25029365-25029384 | MsG0580025847.01.T01:CDS | 40.0% | |
| CTTCCTTCTCTTCTTCTCTA+TGG | - | Chr5:25028480-25028499 | MsG0580025847.01.T01:three_prime_UTR | 40.0% | |
| GAGGTTATGAAAACCAATCC+TGG | - | Chr5:25028592-25028611 | MsG0580025847.01.T01:CDS | 40.0% | |
| GCAGTGAAGATAGAAAAGGA+AGG | - | Chr5:25029148-25029167 | MsG0580025847.01.T01:intron | 40.0% | |
| TGACCAAGGAAAGACATATC+AGG | - | Chr5:25029204-25029223 | MsG0580025847.01.T01:intron | 40.0% | |
| TGATTCTGTTCTTGAGGTTG+AGG | + | Chr5:25028649-25028668 | None:intergenic | 40.0% | |
| TTCCCATAGAGAAGAAGAGA+AGG | + | Chr5:25028486-25028505 | None:intergenic | 40.0% | |
| TTGTGATCCAACATCCATGT+GGG | - | Chr5:25028533-25028552 | MsG0580025847.01.T01:CDS | 40.0% | |
| ! | CAAGTGCCAATGCTTTTACA+AGG | + | Chr5:25029472-25029491 | None:intergenic | 40.0% |
| ! | CGGTCTTGTAAGAATGAGTT+AGG | - | Chr5:25028812-25028831 | MsG0580025847.01.T01:intron | 40.0% |
| ! | GCAAAGAGTATGAAGACAGA+GGG | - | Chr5:25029121-25029140 | MsG0580025847.01.T01:intron | 40.0% |
| ! | TCAGGTTGTGAGACAAAGAA+AGG | - | Chr5:25029172-25029191 | MsG0580025847.01.T01:intron | 40.0% |
| ! | TGCAAAGAGTATGAAGACAG+AGG | - | Chr5:25029120-25029139 | MsG0580025847.01.T01:intron | 40.0% |
| !! | CTTGTAAAAGCATTGGCACT+TGG | - | Chr5:25029470-25029489 | MsG0580025847.01.T01:intron | 40.0% |
| !!! | AAACACTTTTGAGACGGTTC+GGG | + | Chr5:25029762-25029781 | None:intergenic | 40.0% |
| CTATCTTCCCACATGGATGT+TGG | + | Chr5:25028543-25028562 | None:intergenic | 45.0% | |
| CTGTACAGAGGTCAAAATCC+TGG | - | Chr5:25029888-25029907 | MsG0580025847.01.T01:CDS | 45.0% | |
| CTTGTGATCCAACATCCATG+TGG | - | Chr5:25028532-25028551 | MsG0580025847.01.T01:CDS | 45.0% | |
| GTGCCATGTGATGTGAGATT+TGG | + | Chr5:25029371-25029390 | None:intergenic | 45.0% | |
| TCTTGAGGTTGAGGAGGTAA+TGG | + | Chr5:25028640-25028659 | None:intergenic | 45.0% | |
| TTCTGTTCTTGAGGTTGAGG+AGG | + | Chr5:25028646-25028665 | None:intergenic | 45.0% | |
| AGACACAAGCAAAGGTCAGG+AGG | - | Chr5:25029848-25029867 | MsG0580025847.01.T01:CDS | 50.0% | |
| CAAATCCTGCTGCTGTACAG+AGG | - | Chr5:25029876-25029895 | MsG0580025847.01.T01:CDS | 50.0% | |
| CTGTACAGCAGCAGGATTTG+TGG | + | Chr5:25029876-25029895 | None:intergenic | 50.0% | |
| GACACAAGCAAAGGTCAGGA+GGG | - | Chr5:25029849-25029868 | MsG0580025847.01.T01:CDS | 50.0% | |
| GAGAGACACAAGCAAAGGTC+AGG | - | Chr5:25029845-25029864 | MsG0580025847.01.T01:CDS | 50.0% | |
| GAGCAGAGAGACACAAGCAA+AGG | - | Chr5:25029840-25029859 | MsG0580025847.01.T01:CDS | 50.0% | |
| TTGGCCAGTAACTGCTAGTG+AGG | - | Chr5:25028573-25028592 | MsG0580025847.01.T01:CDS | 50.0% | |
| TTTGACCTCTGTACAGCAGC+AGG | + | Chr5:25029884-25029903 | None:intergenic | 50.0% | |
| !! | CGGTGGACTAGTTTGACTTC+TGG | + | Chr5:25028981-25029000 | None:intergenic | 50.0% |
| GTCTCTCTGCTCTGCTTCCC+TGG | + | Chr5:25029832-25029851 | None:intergenic | 60.0% | |
| !! | GCTTTGTAAAGAGGGGCGCC+AGG | + | Chr5:25029909-25029928 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 25028306 | 25030176 | 25028306 | ID=MsG0580025847.01;Name=MsG0580025847.01 |
| Chr5 | mRNA | 25028306 | 25030176 | 25028306 | ID=MsG0580025847.01.T01;Parent=MsG0580025847.01;Name=MsG0580025847.01.T01;_AED=0.30;_eAED=0.30;_QI=193|1|1|1|1|1|3|224|173 |
| Chr5 | exon | 25028306 | 25028649 | 25028306 | ID=MsG0580025847.01.T01:exon:4022;Parent=MsG0580025847.01.T01 |
| Chr5 | exon | 25029257 | 25029393 | 25029257 | ID=MsG0580025847.01.T01:exon:4021;Parent=MsG0580025847.01.T01 |
| Chr5 | exon | 25029719 | 25030176 | 25029719 | ID=MsG0580025847.01.T01:exon:4020;Parent=MsG0580025847.01.T01 |
| Chr5 | five_prime_UTR | 25029984 | 25030176 | 25029984 | ID=MsG0580025847.01.T01:five_prime_utr;Parent=MsG0580025847.01.T01 |
| Chr5 | CDS | 25029719 | 25029983 | 25029719 | ID=MsG0580025847.01.T01:cds;Parent=MsG0580025847.01.T01 |
| Chr5 | CDS | 25029257 | 25029393 | 25029257 | ID=MsG0580025847.01.T01:cds;Parent=MsG0580025847.01.T01 |
| Chr5 | CDS | 25028530 | 25028649 | 25028530 | ID=MsG0580025847.01.T01:cds;Parent=MsG0580025847.01.T01 |
| Chr5 | three_prime_UTR | 25028306 | 25028529 | 25028306 | ID=MsG0580025847.01.T01:three_prime_utr;Parent=MsG0580025847.01.T01 |
| Gene Sequence |
| Protein sequence |
