AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580024836.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024836.01.T01 MTR_5g017630 94.231 364 8 1 1 364 1 351 0.0 710
MsG0580024836.01.T01 MTR_5g017630 93.671 316 7 1 1 316 1 303 0.0 608
MsG0580024836.01.T01 MTR_5g053940 56.417 374 135 5 1 364 1 356 5.40e-141 404
MsG0580024836.01.T01 MTR_5g053940 60.681 323 109 2 47 364 23 332 3.39e-139 399
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024836.01.T01 AT4G37040 75.211 355 71 3 12 364 11 350 0.0 540
MsG0580024836.01.T01 AT1G13270 57.944 321 117 3 49 364 62 369 1.40e-131 381
MsG0580024836.01.T01 AT3G25740 54.603 315 121 5 55 362 42 341 8.66e-114 335
MsG0580024836.01.T01 AT2G45240 47.079 291 135 4 78 362 106 383 5.83e-86 266
MsG0580024836.01.T01 AT1G13270 56.889 225 79 3 49 268 62 273 1.10e-80 248
MsG0580024836.01.T01 AT2G45240 45.175 228 107 3 78 300 106 320 1.77e-61 200
MsG0580024836.01.T01 AT3G25740 50.575 174 71 3 55 219 42 209 5.41e-44 152

Find 95 sgRNAs with CRISPR-Local

Find 391 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGTTACCTCGATCACTTTC+TGG 0.148121 5:+10514851 MsG0580024836.01.T01:CDS
TACAGAACCTATGCTGACTA+TGG 0.239457 5:+10520123 MsG0580024836.01.T01:intron
TGCTTTATCTAGGCATTCTT+TGG 0.262562 5:-10517408 None:intergenic
TTCTGGAAGGCTTGCTGCTC+AGG 0.268389 5:+10515072 MsG0580024836.01.T01:CDS
ACAGATGTGCATACACTCTT+TGG 0.287821 5:-10515885 None:intergenic
AGTGATCATGCAGATAAATA+TGG 0.316494 5:+10517604 MsG0580024836.01.T01:intron
CCAATCTCTTATTCAATAGA+AGG 0.322925 5:+10514879 MsG0580024836.01.T01:CDS
ATTGAATGTATGAGAGCTTC+TGG 0.324353 5:+10515055 MsG0580024836.01.T01:CDS
CACCATTATCAATTATCATT+TGG 0.331640 5:-10515830 None:intergenic
TTACTGAAGTGCAGAATAAC+TGG 0.332632 5:-10517685 None:intergenic
CGACGTGGAGAAACAATTCC+AGG 0.340529 5:-10514938 None:intergenic
GGCACATGCTTCTTATAACT+TGG 0.349020 5:-10520373 None:intergenic
GGAGTGGAATACAAGAAAAT+TGG 0.358013 5:+10517449 MsG0580024836.01.T01:CDS
GTTTCAGATCAAATTCTTGC+TGG 0.360367 5:+10520343 MsG0580024836.01.T01:three_prime_UTR
GCAAGAATTTGATCTGAAAC+TGG 0.381954 5:-10520340 None:intergenic
TGGAGGCTTTGTTATGTCCT+TGG 0.383263 5:-10514969 None:intergenic
TACCCGTCTCCTCTTGGTTA+TGG 0.385751 5:+10515855 MsG0580024836.01.T01:CDS
CACCAAATGATAATTGATAA+TGG 0.386505 5:+10515828 MsG0580024836.01.T01:CDS
CCTTCTATTGAATAAGAGAT+TGG 0.388798 5:-10514879 None:intergenic
TCAATAGGTAGAGGGAGATT+AGG 0.389670 5:+10520499 MsG0580024836.01.T01:three_prime_UTR
ACAACTTACATTTAGATAAA+CGG 0.389802 5:-10516059 None:intergenic
CCCCATCAGGTGTTATCAAA+AGG 0.394761 5:-10520228 None:intergenic
GGAGGCTTTGTTATGTCCTT+GGG 0.396406 5:-10514968 None:intergenic
GTGCAACAGTTTGTTGGCCA+TGG 0.402876 5:+10517637 MsG0580024836.01.T01:CDS
ATATCGATATTGCTTTATCT+AGG 0.407550 5:-10517418 None:intergenic
CAATTGTCTTTCCACATCAC+TGG 0.411722 5:-10520157 None:intergenic
ATACAACACTGTGACTCATT+TGG 0.415013 5:-10520394 None:intergenic
ACCTCAAGCGAACGTGAATC+TGG 0.417194 5:-10515933 None:intergenic
CATGCAGATAAATATGGATA+TGG 0.420071 5:+10517610 MsG0580024836.01.T01:CDS
TTCATTATAGGTTTGTCAAT+AGG 0.420180 5:+10520484 MsG0580024836.01.T01:three_prime_UTR
TGCAACAGTTTGTTGGCCAT+GGG 0.424319 5:+10517638 MsG0580024836.01.T01:CDS
TAAAAGAGATAAGTTATAGA+AGG 0.434539 5:+10514583 MsG0580024836.01.T01:five_prime_UTR
TGCCAACGATGGCTGTGATT+TGG 0.436079 5:+10516577 MsG0580024836.01.T01:CDS
TATTCTTTCGATCATTAAGA+TGG 0.439056 5:+10520530 MsG0580024836.01.T01:three_prime_UTR
CATGAAGTACATGATGAAAA+GGG 0.445848 5:+10515031 MsG0580024836.01.T01:CDS
TCGTTGGCATGAAGATAAAC+TGG 0.457910 5:-10516563 None:intergenic
GAACATCTTACTGAATTGTT+CGG 0.461558 5:-10517472 None:intergenic
GTCATAATCTCAGCCCCATC+AGG 0.462099 5:-10520241 None:intergenic
CAGTGATGTGGAAAGACAAT+TGG 0.469081 5:+10520158 MsG0580024836.01.T01:CDS
TGGACAGTTGTAACAGAAGA+TGG 0.474162 5:+10520178 MsG0580024836.01.T01:CDS
CAGTTTGTTGGCCATGGGGT+TGG 0.478716 5:+10517643 MsG0580024836.01.T01:CDS
CTGTTAAAGTCTTCTTTCAC+CGG 0.482590 5:+10514667 MsG0580024836.01.T01:CDS
ACATGAAGTACATGATGAAA+AGG 0.484431 5:+10515030 MsG0580024836.01.T01:CDS
CGCAATCCCTGGCGGAACCA+TGG 0.485545 5:-10515002 None:intergenic
GCTCAGGTTCTTCAATATGC+TGG 0.488723 5:+10515088 MsG0580024836.01.T01:CDS
GGAATAGTTGAGGAAGTGAT+TGG 0.489316 5:-10514717 None:intergenic
GGTGCGTACCCGTCTCCTCT+TGG 0.492621 5:+10515849 MsG0580024836.01.T01:CDS
GTAAAATCCATGGTTCCGCC+AGG 0.509922 5:+10514995 MsG0580024836.01.T01:CDS
CCGTCTCCTCTTGGTTATGG+TGG 0.510232 5:+10515858 MsG0580024836.01.T01:CDS
TTAAATCAAACCTTCACGAT+TGG 0.513964 5:+10518356 MsG0580024836.01.T01:CDS
GGTGTTGTGCAACAGTTTGT+TGG 0.514303 5:+10517631 MsG0580024836.01.T01:CDS
CCCATCAGGTGTTATCAAAA+GGG 0.517184 5:-10520227 None:intergenic
GCACATGCTTCTTATAACTT+GGG 0.520577 5:-10520372 None:intergenic
ATTTCATCAGTCGTTATGCC+TGG 0.524254 5:-10515792 None:intergenic
CAACTATTCCGTTACAGACA+AGG 0.529560 5:+10514730 MsG0580024836.01.T01:CDS
ATCGATATGTGCACCTGGAG+TGG 0.530627 5:+10517433 MsG0580024836.01.T01:CDS
TCATGTCCACTCGCAATCCC+TGG 0.530751 5:-10515013 None:intergenic
AATCGTAAACGCTTGAGACC+TGG 0.531063 5:+10514920 MsG0580024836.01.T01:CDS
ATAGGTTTGTCAATAGGTAG+AGG 0.533551 5:+10520490 MsG0580024836.01.T01:three_prime_UTR
AGGTCTCAAGCGTTTACGAT+TGG 0.536579 5:-10514918 None:intergenic
ATAGAAACGCACCTTGACTA+AGG 0.539069 5:-10515113 None:intergenic
ATTGGTGGCGTGAGCAGCGT+AGG 0.544477 5:-10514699 None:intergenic
TAGGTTTGTCAATAGGTAGA+GGG 0.545585 5:+10520491 MsG0580024836.01.T01:three_prime_UTR
TATGAATTGTAGGGTTATCA+TGG 0.548429 5:+10516476 MsG0580024836.01.T01:intron
GCCTCCATATGTAAAATCCA+TGG 0.558800 5:+10514985 MsG0580024836.01.T01:CDS
GCAGCGTAGGAATCGATCTC+CGG 0.559965 5:-10514686 None:intergenic
CCACCATAACCAAGAGGAGA+CGG 0.567121 5:-10515858 None:intergenic
ACCAGATTCACGTTCGCTTG+AGG 0.570704 5:+10515932 MsG0580024836.01.T01:CDS
AAGAGAAGAGAACATGGCTA+TGG 0.572057 5:+10514624 MsG0580024836.01.T01:exon
GGTTGAAACCTTGTCTGTAA+CGG 0.574103 5:-10514738 None:intergenic
CACCATAACCAAGAGGAGAC+GGG 0.579998 5:-10515857 None:intergenic
CAGTGATGCGCTGCTGCTCG+CGG 0.583926 5:-10514647 None:intergenic
TTGCGGGGATGTTGATGATG+AGG 0.585529 5:+10516520 MsG0580024836.01.T01:CDS
ACAGAACCTATGCTGACTAT+GGG 0.591367 5:+10520124 MsG0580024836.01.T01:intron
AACGTGAATCTGGTATTCCA+TGG 0.591774 5:-10515923 None:intergenic
AGAGAGAAGAGAAGAGAACA+TGG 0.602866 5:+10514618 MsG0580024836.01.T01:exon
TGTGTTCAAACTGAGCTGAA+AGG 0.604770 5:-10520204 None:intergenic
GTGAATGAATGCATTTGCCA+TGG 0.609251 5:+10515906 MsG0580024836.01.T01:CDS
ATATGCTGGCACCTTAGTCA+AGG 0.610667 5:+10515102 MsG0580024836.01.T01:CDS
CACCAAATCACAGCCATCGT+TGG 0.611995 5:-10516579 None:intergenic
GTTCCGCCAGGGATTGCGAG+TGG 0.613961 5:+10515007 MsG0580024836.01.T01:CDS
AATGTATGAGAGCTTCTGGA+AGG 0.615258 5:+10515059 MsG0580024836.01.T01:CDS
GTTTATCTTCATGCCAACGA+TGG 0.620089 5:+10516566 MsG0580024836.01.T01:CDS
TAAAATCCATGGTTCCGCCA+GGG 0.622525 5:+10514996 MsG0580024836.01.T01:CDS
GCAATATCGATATGTGCACC+TGG 0.626501 5:+10517428 MsG0580024836.01.T01:CDS
ATGCTGCCCATAGTCAGCAT+AGG 0.627596 5:-10520130 None:intergenic
TCCACGTCGAAAAGTTCCCA+AGG 0.628745 5:+10514952 MsG0580024836.01.T01:CDS
TGTCTGTAACGGAATAGTTG+AGG 0.629364 5:-10514727 None:intergenic
GCAGCATCAATCCAGTGATG+TGG 0.633825 5:+10520146 MsG0580024836.01.T01:CDS
ATGAAGTACATGATGAAAAG+GGG 0.636342 5:+10515032 MsG0580024836.01.T01:CDS
ATAGTTGAGGAAGTGATTGG+TGG 0.636650 5:-10514714 None:intergenic
GCAACAGTTTGTTGGCCATG+GGG 0.649120 5:+10517639 MsG0580024836.01.T01:CDS
GTTAAGCCAGAAAGTGATCG+AGG 0.668909 5:-10514857 None:intergenic
GGAAAACCACCATAACCAAG+AGG 0.708028 5:-10515864 None:intergenic
TGTCCACTCGCAATCCCTGG+CGG 0.709523 5:-10515010 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTGTAAAATTATATATCT+TGG + Chr5:10515974-10515993 MsG0580024836.01.T01:intron 10.0%
!! ATTGTAAAATTATATATCTT+GGG + Chr5:10515975-10515994 MsG0580024836.01.T01:intron 10.0%
!! CAAATAAAATTCATTATATT+TGG - Chr5:10517210-10517229 None:intergenic 10.0%
!!! AATGTTTTCAATATAATATA+AGG - Chr5:10518181-10518200 None:intergenic 10.0%
!!! ATGTTTTCAATATAATATAA+GGG - Chr5:10518180-10518199 None:intergenic 10.0%
!!! ATTGGTAAAAATATTAATTT+TGG + Chr5:10516720-10516739 MsG0580024836.01.T01:intron 10.0%
!!! TAAGTTGTATAATTTTTTTT+TGG + Chr5:10516074-10516093 MsG0580024836.01.T01:intron 10.0%
!!! TTATCATTTTTAAAAATTGA+AGG - Chr5:10517844-10517863 None:intergenic 10.0%
!! AATTAAATTGTTGAAATGAT+TGG + Chr5:10515709-10515728 MsG0580024836.01.T01:intron 15.0%
!! AATTCCAAAACATATAAAAA+TGG - Chr5:10516401-10516420 None:intergenic 15.0%
!! ATAACAAAATCTATAAATCT+TGG - Chr5:10520061-10520080 None:intergenic 15.0%
!! ATTCCAAAACATATAAAAAT+GGG - Chr5:10516400-10516419 None:intergenic 15.0%
!!! ATAAATATAGATTTTCAACA+CGG - Chr5:10517784-10517803 None:intergenic 15.0%
!!! ATTTAATTTTTTTCTTTACC+TGG + Chr5:10520093-10520112 MsG0580024836.01.T01:intron 15.0%
!!! ATTTATGGTTTTATATTTTC+TGG + Chr5:10517116-10517135 MsG0580024836.01.T01:intron 15.0%
!!! TATTTTGTTCTTTTAAAACA+TGG + Chr5:10516293-10516312 MsG0580024836.01.T01:intron 15.0%
!!! TTCTTGTTATTTTTATTTTC+AGG + Chr5:10518308-10518327 MsG0580024836.01.T01:intron 15.0%
!! AAAATGCAGAATTAAATAAC+AGG - Chr5:10516631-10516650 None:intergenic 20.0%
!! AAATATTGAATTGTGACATT+AGG - Chr5:10518604-10518623 None:intergenic 20.0%
!! AAATGCAGAATTAAATAACA+GGG - Chr5:10516630-10516649 None:intergenic 20.0%
!! AACAATTAGAATAAGTTGTA+AGG - Chr5:10517240-10517259 None:intergenic 20.0%
!! ACAACTTACATTTAGATAAA+CGG - Chr5:10516062-10516081 None:intergenic 20.0%
!! AGAAGAAGACAAAAAAATAT+AGG + Chr5:10519732-10519751 MsG0580024836.01.T01:intron 20.0%
!! AGATATTTATTATCTTAGCA+GGG + Chr5:10516967-10516986 MsG0580024836.01.T01:intron 20.0%
!! CATAACAATCTATATTGTAT+TGG - Chr5:10518394-10518413 None:intergenic 20.0%
!! CTTAAGTCTATATATAATCA+TGG + Chr5:10519972-10519991 MsG0580024836.01.T01:intron 20.0%
!! TAAAAGAGATAAGTTATAGA+AGG + Chr5:10514583-10514602 MsG0580024836.01.T01:five_prime_UTR 20.0%
!! TAATTGAAAAGAAGAGAAAA+TGG - Chr5:10514782-10514801 None:intergenic 20.0%
!! TAGATATTTATTATCTTAGC+AGG + Chr5:10516966-10516985 MsG0580024836.01.T01:intron 20.0%
!! TATTAACTAACAAACATATG+AGG + Chr5:10515603-10515622 MsG0580024836.01.T01:intron 20.0%
!!! ACACTAAAACTTGTTAAAAA+GGG - Chr5:10519018-10519037 None:intergenic 20.0%
!!! ATATCTGAAATTCAAAAACT+AGG - Chr5:10516859-10516878 None:intergenic 20.0%
!!! ATTTTGGATTTTAGATTACT+TGG + Chr5:10516736-10516755 MsG0580024836.01.T01:intron 20.0%
!!! CAACTTATTCTAATTGTTTT+TGG + Chr5:10517242-10517261 MsG0580024836.01.T01:intron 20.0%
!!! CTACACTTATTTTTCATTAT+AGG + Chr5:10520472-10520491 MsG0580024836.01.T01:three_prime_UTR 20.0%
!!! GAAAATAATGATTTTACTCT+TGG + Chr5:10519161-10519180 MsG0580024836.01.T01:intron 20.0%
!!! GTTTTTCATATATAGAGTTA+AGG + Chr5:10519936-10519955 MsG0580024836.01.T01:intron 20.0%
!!! TATTTTAATTATGATTGCAG+CGG + Chr5:10515342-10515361 MsG0580024836.01.T01:intron 20.0%
!!! TCAAAATTTGTAAAGTACTT+TGG + Chr5:10519472-10519491 MsG0580024836.01.T01:intron 20.0%
!!! TGTATAATTTTTTTTTGGCA+TGG + Chr5:10516079-10516098 MsG0580024836.01.T01:intron 20.0%
!!! TTAATTCATCTAGCTTATTT+TGG + Chr5:10516341-10516360 MsG0580024836.01.T01:intron 20.0%
!!! TTATTTTTACTAGCTTATAG+TGG - Chr5:10515438-10515457 None:intergenic 20.0%
!!! TTTACAATTTAAGAGTTTTC+TGG - Chr5:10515963-10515982 None:intergenic 20.0%
!!! TTTACCAATATTTTGAAAAC+TGG - Chr5:10516709-10516728 None:intergenic 20.0%
!!! TTTTATATTTTCTGGTCAAT+AGG + Chr5:10517124-10517143 MsG0580024836.01.T01:intron 20.0%
!!! TTTTCAATATAATATAAGGG+TGG - Chr5:10518177-10518196 None:intergenic 20.0%
! AAAAAAATTACCAATCGTGA+AGG - Chr5:10518369-10518388 None:intergenic 25.0%
! AAAACCATAAATGAATACCA+AGG - Chr5:10517108-10517127 None:intergenic 25.0%
! AAACATACACCTAACAAATA+AGG - Chr5:10519603-10519622 None:intergenic 25.0%
! AAACCATAAATGAATACCAA+GGG - Chr5:10517107-10517126 None:intergenic 25.0%
! AAAGAAGAGAAAATGGAATT+AGG - Chr5:10514775-10514794 None:intergenic 25.0%
! AAAGAGCTCAATTTCAATTT+GGG - Chr5:10519301-10519320 None:intergenic 25.0%
! AAATAAGAAAGTAGAGATTG+AGG - Chr5:10519407-10519426 None:intergenic 25.0%
! AAATGAATATTTCCAGAAAG+AGG - Chr5:10518114-10518133 None:intergenic 25.0%
! AACAAATGGATATGAATTGT+AGG + Chr5:10516466-10516485 MsG0580024836.01.T01:intron 25.0%
! AACATACACCTAACAAATAA+GGG - Chr5:10519602-10519621 None:intergenic 25.0%
! AATAAGAAAGTAGAGATTGA+GGG - Chr5:10519406-10519425 None:intergenic 25.0%
! AATATAGGCTAAAGATTTAG+AGG + Chr5:10519747-10519766 MsG0580024836.01.T01:intron 25.0%
! ACAAAATCTATAAATCTTGG+AGG - Chr5:10520058-10520077 None:intergenic 25.0%
! ACAAATGGATATGAATTGTA+GGG + Chr5:10516467-10516486 MsG0580024836.01.T01:intron 25.0%
! ATAAAACTTGTGCTTTGATT+TGG + Chr5:10516437-10516456 MsG0580024836.01.T01:intron 25.0%
! ATATCGATATTGCTTTATCT+AGG - Chr5:10517421-10517440 None:intergenic 25.0%
! ATTAAGAGTTATTGCATTAG+AGG + Chr5:10519708-10519727 MsG0580024836.01.T01:intron 25.0%
! CACCAAATGATAATTGATAA+TGG + Chr5:10515828-10515847 MsG0580024836.01.T01:CDS 25.0%
! CACCATTATCAATTATCATT+TGG - Chr5:10515833-10515852 None:intergenic 25.0%
! CATTCAAAACTTAATACCAT+AGG - Chr5:10517057-10517076 None:intergenic 25.0%
! CTTATTCTTCATTCATTCTT+TGG + Chr5:10514803-10514822 MsG0580024836.01.T01:intron 25.0%
! CTTGTGGAATGTAAAATATA+GGG - Chr5:10518035-10518054 None:intergenic 25.0%
! GTTTGGATAAAATATGTGAA+CGG - Chr5:10518211-10518230 None:intergenic 25.0%
! TAAAGAGCTCAATTTCAATT+TGG - Chr5:10519302-10519321 None:intergenic 25.0%
! TATAACAGTATAAGCTAACA+GGG - Chr5:10518073-10518092 None:intergenic 25.0%
! TATAGACTTAAGAGTCTATT+AGG - Chr5:10519964-10519983 None:intergenic 25.0%
! TATTCTTTCGATCATTAAGA+TGG + Chr5:10520530-10520549 MsG0580024836.01.T01:three_prime_UTR 25.0%
! TTCATTATAGGTTTGTCAAT+AGG + Chr5:10520484-10520503 MsG0580024836.01.T01:three_prime_UTR 25.0%
! TTCTGAATTTATGTGGAATA+AGG - Chr5:10517527-10517546 None:intergenic 25.0%
! TTCTTTCACTACATAAAAGT+TGG + Chr5:10517981-10518000 MsG0580024836.01.T01:intron 25.0%
! TTTCATATACTCATTCCAAA+GGG - Chr5:10516910-10516929 None:intergenic 25.0%
!! ACATATGAGGTTGTTATTAT+TGG + Chr5:10515616-10515635 MsG0580024836.01.T01:intron 25.0%
!! CGAATTTAAAACTGTTTGTT+TGG + Chr5:10518140-10518159 MsG0580024836.01.T01:intron 25.0%
!! CTATATTTTACATTCCACAA+GGG + Chr5:10518034-10518053 MsG0580024836.01.T01:intron 25.0%
!! TGTAAAGTACTTTGGTATTT+GGG + Chr5:10519480-10519499 MsG0580024836.01.T01:intron 25.0%
!! TGTTTTGTGTTTATATGAGT+GGG + Chr5:10517354-10517373 MsG0580024836.01.T01:intron 25.0%
!! TTGTAAAGTACTTTGGTATT+TGG + Chr5:10519479-10519498 MsG0580024836.01.T01:intron 25.0%
!! TTTTCATATACTCATTCCAA+AGG - Chr5:10516911-10516930 None:intergenic 25.0%
!!! ATTAAGTTTTGAATGAGACA+CGG + Chr5:10517062-10517081 MsG0580024836.01.T01:intron 25.0%
!!! ATTTTCTTTTATTTGCAGGA+TGG + Chr5:10516013-10516032 MsG0580024836.01.T01:intron 25.0%
!!! CTTATTTTTGCTTTTTGTTC+GGG + Chr5:10516109-10516128 MsG0580024836.01.T01:intron 25.0%
!!! GACACTAAAACTTGTTAAAA+AGG - Chr5:10519019-10519038 None:intergenic 25.0%
!!! GCTTATTTTTGCTTTTTGTT+CGG + Chr5:10516108-10516127 MsG0580024836.01.T01:intron 25.0%
!!! GTTTAATGCACTTTTTGTAA+TGG + Chr5:10516770-10516789 MsG0580024836.01.T01:intron 25.0%
!!! TAAACTTTTTGAAAACCCAT+CGG + Chr5:10519527-10519546 MsG0580024836.01.T01:intron 25.0%
!!! TATTTATTTTACTGCTTACG+AGG + Chr5:10517797-10517816 MsG0580024836.01.T01:intron 25.0%
!!! TGACATTTTCTTTTATTTGC+AGG + Chr5:10516009-10516028 MsG0580024836.01.T01:intron 25.0%
!!! TTGCCCATTTTTATATGTTT+TGG + Chr5:10516394-10516413 MsG0580024836.01.T01:intron 25.0%
!!! TTGTTTTGTGTTTATATGAG+TGG + Chr5:10517353-10517372 MsG0580024836.01.T01:intron 25.0%
!!! TTTTCTTTCCCTTATTTGTT+AGG + Chr5:10519591-10519610 MsG0580024836.01.T01:intron 25.0%
AACTGCCTTTGAATTTACAT+AGG + Chr5:10518901-10518920 MsG0580024836.01.T01:intron 30.0%
AATACCATAGGATATTCTAC+TGG - Chr5:10517045-10517064 None:intergenic 30.0%
ACAAACATAACTCTGAATAG+AGG - Chr5:10518280-10518299 None:intergenic 30.0%
ACATAAATTCAGAAAACCTC+TGG + Chr5:10517533-10517552 MsG0580024836.01.T01:intron 30.0%
ACATGAAGTACATGATGAAA+AGG + Chr5:10515030-10515049 MsG0580024836.01.T01:CDS 30.0%
AGAAAATGGAATTAGGAAGA+AGG - Chr5:10514768-10514787 None:intergenic 30.0%
AGCTACTCTACTGTATTATA+TGG + Chr5:10516938-10516957 MsG0580024836.01.T01:intron 30.0%
AGTGATCATGCAGATAAATA+TGG + Chr5:10517604-10517623 MsG0580024836.01.T01:intron 30.0%
AGTTCATGATGTCTATATGA+GGG + Chr5:10519551-10519570 MsG0580024836.01.T01:intron 30.0%
ATACAATTTCCAGGAATAAG+TGG - Chr5:10517157-10517176 None:intergenic 30.0%
ATGAAGTACATGATGAAAAG+GGG + Chr5:10515032-10515051 MsG0580024836.01.T01:CDS 30.0%
ATGACTAAAAAAGACCCATT+TGG - Chr5:10515490-10515509 None:intergenic 30.0%
ATGATATTGTGCATAGACTA+AGG + Chr5:10517923-10517942 MsG0580024836.01.T01:intron 30.0%
ATGATTATTGTTTGCAAAGC+TGG + Chr5:10518425-10518444 MsG0580024836.01.T01:intron 30.0%
CAAATTTAAATTTGGCAGTG+TGG - Chr5:10518790-10518809 None:intergenic 30.0%
CACAATTACTCCAAAATAAG+TGG - Chr5:10518878-10518897 None:intergenic 30.0%
CACACTGCCAAATTTAAATT+TGG + Chr5:10518788-10518807 MsG0580024836.01.T01:intron 30.0%
CATGAAGTACATGATGAAAA+GGG + Chr5:10515031-10515050 MsG0580024836.01.T01:CDS 30.0%
CATGCAGATAAATATGGATA+TGG + Chr5:10517610-10517629 MsG0580024836.01.T01:CDS 30.0%
CCAATCTCTTATTCAATAGA+AGG + Chr5:10514879-10514898 MsG0580024836.01.T01:CDS 30.0%
CCTTCTATTGAATAAGAGAT+TGG - Chr5:10514882-10514901 None:intergenic 30.0%
CCTTGTGGAATGTAAAATAT+AGG - Chr5:10518036-10518055 None:intergenic 30.0%
CGATCATAAATCATGTCTAT+AGG - Chr5:10519784-10519803 None:intergenic 30.0%
CTCACTAAAGCAAGTTTAAA+GGG - Chr5:10520027-10520046 None:intergenic 30.0%
CTTAGCCTATGTAAATTCAA+AGG - Chr5:10518909-10518928 None:intergenic 30.0%
GAACATCTTACTGAATTGTT+CGG - Chr5:10517475-10517494 None:intergenic 30.0%
GAATTCATTATGAAAACCTG+AGG + Chr5:10516792-10516811 MsG0580024836.01.T01:intron 30.0%
GACCTGTATCAATCAAATAA+GGG - Chr5:10517387-10517406 None:intergenic 30.0%
GCAGCTTCCAAATTTAAATT+TGG - Chr5:10518798-10518817 None:intergenic 30.0%
GGCTTCTTTGTAAAGTTTAA+TGG - Chr5:10518014-10518033 None:intergenic 30.0%
GTAGTGTTTGGTAAATTTAG+CGG + Chr5:10515259-10515278 MsG0580024836.01.T01:intron 30.0%
GTATAACAGTATAAGCTAAC+AGG - Chr5:10518074-10518093 None:intergenic 30.0%
GTGATTGAATTTGTAGTGTT+TGG + Chr5:10515247-10515266 MsG0580024836.01.T01:intron 30.0%
TAAACACAAAACAAATGACG+AGG - Chr5:10517347-10517366 None:intergenic 30.0%
TAGGTTCTGTAAAATTTACC+AGG - Chr5:10520114-10520133 None:intergenic 30.0%
TAGTTCATGATGTCTATATG+AGG + Chr5:10519550-10519569 MsG0580024836.01.T01:intron 30.0%
TATCCCTTGGTATTCATTTA+TGG + Chr5:10517101-10517120 MsG0580024836.01.T01:intron 30.0%
TATGAATTGTAGGGTTATCA+TGG + Chr5:10516476-10516495 MsG0580024836.01.T01:intron 30.0%
TCTCACTAAAGCAAGTTTAA+AGG - Chr5:10520028-10520047 None:intergenic 30.0%
TGACCTGTATCAATCAAATA+AGG - Chr5:10517388-10517407 None:intergenic 30.0%
TGATATTGTGCATAGACTAA+GGG + Chr5:10517924-10517943 MsG0580024836.01.T01:intron 30.0%
TTAAATCAAACCTTCACGAT+TGG + Chr5:10518356-10518375 MsG0580024836.01.T01:CDS 30.0%
TTATGGGATATACAATTTCC+AGG - Chr5:10517166-10517185 None:intergenic 30.0%
TTCAGATATTGTGCTAACAA+AGG + Chr5:10516870-10516889 MsG0580024836.01.T01:intron 30.0%
TTTGGTAAAACGTTAGTCAA+CGG - Chr5:10517192-10517211 None:intergenic 30.0%
! ACAATGTTGCATTTTATGAG+CGG + Chr5:10519666-10519685 MsG0580024836.01.T01:intron 30.0%
! AGAGGTTTTCTGAATTTATG+TGG - Chr5:10517534-10517553 None:intergenic 30.0%
! CAATTTAAGAGTTTTCTGGA+AGG - Chr5:10515959-10515978 None:intergenic 30.0%
! CAGTCCAGTTTTCAAAATAT+TGG + Chr5:10516702-10516721 MsG0580024836.01.T01:intron 30.0%
! CCTATATTTTACATTCCACA+AGG + Chr5:10518033-10518052 MsG0580024836.01.T01:intron 30.0%
! GAATGCTTTTATATTCCCTT+TGG + Chr5:10516892-10516911 MsG0580024836.01.T01:intron 30.0%
! GTAAAGTACTTTGGTATTTG+GGG + Chr5:10519481-10519500 MsG0580024836.01.T01:intron 30.0%
! GTTGTTATTATTGGTTAGTG+CGG + Chr5:10515625-10515644 MsG0580024836.01.T01:intron 30.0%
! GTTTTGTGTTTATATGAGTG+GGG + Chr5:10517355-10517374 MsG0580024836.01.T01:intron 30.0%
! TAAACTAGCTTATCTGCTAT+CGG - Chr5:10515205-10515224 None:intergenic 30.0%
! TCAGATCATTTTCACCTTAA+AGG + Chr5:10519254-10519273 MsG0580024836.01.T01:intron 30.0%
! TTGTTATTATTGGTTAGTGC+GGG + Chr5:10515626-10515645 MsG0580024836.01.T01:intron 30.0%
!! ATCACATTTTGAAGAAACTG+TGG + Chr5:10519905-10519924 MsG0580024836.01.T01:intron 30.0%
!! TATATTTTCTGGTCAATAGG+AGG + Chr5:10517127-10517146 MsG0580024836.01.T01:intron 30.0%
!! TGATTTGGTGATTGAACAAA+TGG + Chr5:10516452-10516471 MsG0580024836.01.T01:intron 30.0%
!! TTGTTTTCTGTTGCATTGAT+TGG + Chr5:10518469-10518488 MsG0580024836.01.T01:intron 30.0%
!! TTTTCAGGAAACAATGAAGA+TGG + Chr5:10518323-10518342 MsG0580024836.01.T01:intron 30.0%
!!! AATTTTTTTTTGGCATGGCA+GGG + Chr5:10516084-10516103 MsG0580024836.01.T01:intron 30.0%
!!! CTAACTGTTTTAATTGTGGA+TGG + Chr5:10519040-10519059 MsG0580024836.01.T01:intron 30.0%
!!! TAATTTTTTTTTGGCATGGC+AGG + Chr5:10516083-10516102 MsG0580024836.01.T01:intron 30.0%
!!! TGTTTTCTGTTGCATTGATT+GGG + Chr5:10518470-10518489 MsG0580024836.01.T01:intron 30.0%
!!! TTAAGTTTTGAATGAGACAC+GGG + Chr5:10517063-10517082 MsG0580024836.01.T01:intron 30.0%
AAATAAACTATAAGCTCGCG+AGG + Chr5:10515452-10515471 MsG0580024836.01.T01:intron 35.0%
AAATAAGTGGCTTACACACA+TGG - Chr5:10518865-10518884 None:intergenic 35.0%
AACAAAACCTTATTCCAGCA+GGG - Chr5:10519845-10519864 None:intergenic 35.0%
AAGGAAAGCGAAATGATGAA+AGG - Chr5:10518650-10518669 None:intergenic 35.0%
AGAAAAGCAATCACATCTGA+CGG - Chr5:10518250-10518269 None:intergenic 35.0%
AGGAAAGAGAGAATTTCTCA+AGG - Chr5:10518669-10518688 None:intergenic 35.0%
AGTTCACACGTCCAAAAATA+TGG + Chr5:10518764-10518783 MsG0580024836.01.T01:intron 35.0%
ATACAACACTGTGACTCATT+TGG - Chr5:10520397-10520416 None:intergenic 35.0%
ATAGGTTTGTCAATAGGTAG+AGG + Chr5:10520490-10520509 MsG0580024836.01.T01:three_prime_UTR 35.0%
ATTACAATCCTAAGACACGT+AGG - Chr5:10515574-10515593 None:intergenic 35.0%
ATTCAATCACCTAGCTTATC+TGG - Chr5:10515237-10515256 None:intergenic 35.0%
ATTGAATGTATGAGAGCTTC+TGG + Chr5:10515055-10515074 MsG0580024836.01.T01:CDS 35.0%
CAACAATATAGCACAAGAAG+AGG - Chr5:10516228-10516247 None:intergenic 35.0%
CATGTCTATAGGCAAACTAT+TGG - Chr5:10519773-10519792 None:intergenic 35.0%
CTAGCGCTTGGTAAAAATAA+TGG + Chr5:10519130-10519149 MsG0580024836.01.T01:intron 35.0%
CTATCCAGTAGAATATCCTA+TGG + Chr5:10517038-10517057 MsG0580024836.01.T01:intron 35.0%
CTCTTCTTGTGCTATATTGT+TGG + Chr5:10516226-10516245 MsG0580024836.01.T01:intron 35.0%
CTGTTAAAGTCTTCTTTCAC+CGG + Chr5:10514667-10514686 MsG0580024836.01.T01:CDS 35.0%
CTTGGTATGATTGAACAGTA+GGG + Chr5:10519179-10519198 MsG0580024836.01.T01:intron 35.0%
GAATAAGGAAATGCAGGAAT+GGG - Chr5:10517512-10517531 None:intergenic 35.0%
GATATTGTGCATAGACTAAG+GGG + Chr5:10517925-10517944 MsG0580024836.01.T01:intron 35.0%
GATTGAGGGAATGGAAAATT+TGG - Chr5:10519392-10519411 None:intergenic 35.0%
GCACATGCTTCTTATAACTT+GGG - Chr5:10520375-10520394 None:intergenic 35.0%
GCGGAAATATTAGATGAGAT+AGG + Chr5:10519685-10519704 MsG0580024836.01.T01:intron 35.0%
GGAGTGGAATACAAGAAAAT+TGG + Chr5:10517449-10517468 MsG0580024836.01.T01:CDS 35.0%
GTATAAGGAAGAATATCCCT+TGG + Chr5:10517088-10517107 MsG0580024836.01.T01:intron 35.0%
GTTGAAATTTCCAAGTGGAA+AGG - Chr5:10518689-10518708 None:intergenic 35.0%
GTTTCAGATCAAATTCTTGC+TGG + Chr5:10520343-10520362 MsG0580024836.01.T01:three_prime_UTR 35.0%
TAGGTTTGTCAATAGGTAGA+GGG + Chr5:10520491-10520510 MsG0580024836.01.T01:three_prime_UTR 35.0%
TATAAGCTAAAGCAAGTTCC+AGG + Chr5:10519426-10519445 MsG0580024836.01.T01:intron 35.0%
TATATAGAGGGTAGTGAAAG+TGG + Chr5:10519066-10519085 MsG0580024836.01.T01:intron 35.0%
TATGTGGAATAAGGAAATGC+AGG - Chr5:10517518-10517537 None:intergenic 35.0%
TCTTGGTATGATTGAACAGT+AGG + Chr5:10519178-10519197 MsG0580024836.01.T01:intron 35.0%
TCTTGTGCTATATTGTTGGA+GGG + Chr5:10516230-10516249 MsG0580024836.01.T01:intron 35.0%
TGAAAATGATCTGACAGTGA+AGG - Chr5:10519248-10519267 None:intergenic 35.0%
TGAATATTTCCAGAAAGAGG+TGG - Chr5:10518111-10518130 None:intergenic 35.0%
TGAGGCTAAAAAACTAGTTC+AGG + Chr5:10516538-10516557 MsG0580024836.01.T01:CDS 35.0%
TGATATATTCCACCTCTTTC+TGG + Chr5:10518099-10518118 MsG0580024836.01.T01:intron 35.0%
TGATGAATCATATAGTCCAG+AGG - Chr5:10517552-10517571 None:intergenic 35.0%
TGCTTTATCTAGGCATTCTT+TGG - Chr5:10517411-10517430 None:intergenic 35.0%
TGGATGTTGAGATACTATTC+TGG + Chr5:10517262-10517281 MsG0580024836.01.T01:intron 35.0%
TGTGGATGGTACTATATAGA+GGG + Chr5:10519054-10519073 MsG0580024836.01.T01:intron 35.0%
TTACAATCCTAAGACACGTA+GGG - Chr5:10515573-10515592 None:intergenic 35.0%
TTACTGAAGTGCAGAATAAC+TGG - Chr5:10517688-10517707 None:intergenic 35.0%
TTCTTGTGCTATATTGTTGG+AGG + Chr5:10516229-10516248 MsG0580024836.01.T01:intron 35.0%
TTGTGGATGGTACTATATAG+AGG + Chr5:10519053-10519072 MsG0580024836.01.T01:intron 35.0%
! ACATCGACAACTTTCTTTTG+CGG + Chr5:10516503-10516522 MsG0580024836.01.T01:CDS 35.0%
! ACCATGGATTTTACATATGG+AGG - Chr5:10514989-10515008 None:intergenic 35.0%
! ATTTTCTTGTATTCCACTCC+AGG - Chr5:10517449-10517468 None:intergenic 35.0%
! CTCCCTTATTTGATTGATAC+AGG + Chr5:10517382-10517401 MsG0580024836.01.T01:intron 35.0%
! GATAGCTTTACAGTTTACGT+TGG - Chr5:10517023-10517042 None:intergenic 35.0%
! GCAAGAATTTGATCTGAAAC+TGG - Chr5:10520343-10520362 None:intergenic 35.0%
! GGAACCATGGATTTTACATA+TGG - Chr5:10514992-10515011 None:intergenic 35.0%
! GGATTTTAGATTACTTGGTC+TGG + Chr5:10516741-10516760 MsG0580024836.01.T01:intron 35.0%
! TATCTGCTACTTCTCCTTTA+AGG - Chr5:10519271-10519290 None:intergenic 35.0%
! TGTGTGTAAGCCACTTATTT+TGG + Chr5:10518865-10518884 MsG0580024836.01.T01:intron 35.0%
! TTGGACGTGTGAACTTTTAT+TGG - Chr5:10518759-10518778 None:intergenic 35.0%
!! ACGTTAGTCAACGGATTTTA+TGG - Chr5:10517183-10517202 None:intergenic 35.0%
!! ATTTTGAGAACATGACACCA+AGG - Chr5:10519459-10519478 None:intergenic 35.0%
!! CGTTAGTCAACGGATTTTAT+GGG - Chr5:10517182-10517201 None:intergenic 35.0%
!! CTTCATTCATTCTTTGGAAC+AGG + Chr5:10514809-10514828 MsG0580024836.01.T01:intron 35.0%
!! TTTTGAGAACATGACACCAA+GGG - Chr5:10519458-10519477 None:intergenic 35.0%
!!! ATTTTTGCTTTTTGTTCGGG+TGG + Chr5:10516112-10516131 MsG0580024836.01.T01:intron 35.0%
!!! GGCAAAAGTATTTTGAGGTT+TGG - Chr5:10518228-10518247 None:intergenic 35.0%
!!! GTCGCTAACTGTTTTAATTG+TGG + Chr5:10519036-10519055 MsG0580024836.01.T01:intron 35.0%
!!! TAAGTTTTGAATGAGACACG+GGG + Chr5:10517064-10517083 MsG0580024836.01.T01:intron 35.0%
!!! TTTTTGCTTTTTGTTCGGGT+GGG + Chr5:10516113-10516132 MsG0580024836.01.T01:intron 35.0%
AAATACACCCTACGTGTCTT+AGG + Chr5:10515563-10515582 MsG0580024836.01.T01:intron 40.0%
AACCTGAGGAATTACAGAGA+AGG + Chr5:10516806-10516825 MsG0580024836.01.T01:intron 40.0%
AACGTGAATCTGGTATTCCA+TGG - Chr5:10515926-10515945 None:intergenic 40.0%
AAGAGAAGAGAACATGGCTA+TGG + Chr5:10514624-10514643 MsG0580024836.01.T01:exon 40.0%
AAGTTCCAGGAATATACCCT+TGG + Chr5:10519439-10519458 MsG0580024836.01.T01:intron 40.0%
AATGATCTGACAGTGAAGGA+TGG - Chr5:10519244-10519263 None:intergenic 40.0%
AATGTATGAGAGCTTCTGGA+AGG + Chr5:10515059-10515078 MsG0580024836.01.T01:CDS 40.0%
AATTGCAACAGCTCAGATGT+GGG + Chr5:10518956-10518975 MsG0580024836.01.T01:intron 40.0%
ACAAAACCTTATTCCAGCAG+GGG - Chr5:10519844-10519863 None:intergenic 40.0%
ACAGATGTGCATACACTCTT+TGG - Chr5:10515888-10515907 None:intergenic 40.0%
ACCTGAGGAATTACAGAGAA+GGG + Chr5:10516807-10516826 MsG0580024836.01.T01:intron 40.0%
AGACATCATGAACTACCGAT+GGG - Chr5:10519545-10519564 None:intergenic 40.0%
AGAGAGAAGAGAAGAGAACA+TGG + Chr5:10514618-10514637 MsG0580024836.01.T01:exon 40.0%
AGGAAGTAACGGTTACCAAA+TGG + Chr5:10515472-10515491 MsG0580024836.01.T01:intron 40.0%
AGGAGAAGTAGCAGATATTG+TGG + Chr5:10519274-10519293 MsG0580024836.01.T01:intron 40.0%
ATAGAAACGCACCTTGACTA+AGG - Chr5:10515116-10515135 None:intergenic 40.0%
ATAGTTGAGGAAGTGATTGG+TGG - Chr5:10514717-10514736 None:intergenic 40.0%
ATGCCTATCCATATGGTATG+TGG - Chr5:10518840-10518859 None:intergenic 40.0%
ATTTCATCAGTCGTTATGCC+TGG - Chr5:10515795-10515814 None:intergenic 40.0%
CAACAAAACCTTATTCCAGC+AGG - Chr5:10519846-10519865 None:intergenic 40.0%
CAACTATTCCGTTACAGACA+AGG + Chr5:10514730-10514749 MsG0580024836.01.T01:CDS 40.0%
CAATTGTCTTTCCACATCAC+TGG - Chr5:10520160-10520179 None:intergenic 40.0%
CAGTGATGTGGAAAGACAAT+TGG + Chr5:10520158-10520177 MsG0580024836.01.T01:CDS 40.0%
CCTGTTTATTAAGCTACGCA+AGG - Chr5:10518711-10518730 None:intergenic 40.0%
CCTTGCGTAGCTTAATAAAC+AGG + Chr5:10518708-10518727 MsG0580024836.01.T01:intron 40.0%
CTAGGTAAGTCCTTACTCTA+AGG - Chr5:10516841-10516860 None:intergenic 40.0%
CTGACCATTGAACTAGTTCA+CGG - Chr5:10516685-10516704 None:intergenic 40.0%
CTTGTGCTATATTGTTGGAG+GGG + Chr5:10516231-10516250 MsG0580024836.01.T01:intron 40.0%
GAAAAGCAATCACATCTGAC+GGG - Chr5:10518249-10518268 None:intergenic 40.0%
GAAAGTAGAGATTGAGGGAA+TGG - Chr5:10519401-10519420 None:intergenic 40.0%
GATACTACCCACATACCATA+TGG + Chr5:10518829-10518848 MsG0580024836.01.T01:intron 40.0%
GCAAGGTTGAAATTTCCAAG+TGG - Chr5:10518694-10518713 None:intergenic 40.0%
GCCTCCATATGTAAAATCCA+TGG + Chr5:10514985-10515004 MsG0580024836.01.T01:CDS 40.0%
GGAAGTAACGGTTACCAAAT+GGG + Chr5:10515473-10515492 MsG0580024836.01.T01:intron 40.0%
GGAATAAGGAAATGCAGGAA+TGG - Chr5:10517513-10517532 None:intergenic 40.0%
GGAATAGTTGAGGAAGTGAT+TGG - Chr5:10514720-10514739 None:intergenic 40.0%
GGAATGGGAGAACAAATGAT+AGG - Chr5:10517497-10517516 None:intergenic 40.0%
GGCACATGCTTCTTATAACT+TGG - Chr5:10520376-10520395 None:intergenic 40.0%
GGGTCTAAATCCTTAGAGTA+AGG + Chr5:10516828-10516847 MsG0580024836.01.T01:intron 40.0%
GGTTGAAACCTTGTCTGTAA+CGG - Chr5:10514741-10514760 None:intergenic 40.0%
GTGAATGAATGCATTTGCCA+TGG + Chr5:10515906-10515925 MsG0580024836.01.T01:CDS 40.0%
GTTTATCTTCATGCCAACGA+TGG + Chr5:10516566-10516585 MsG0580024836.01.T01:CDS 40.0%
TAAGACACGTAGGGTGTATT+TGG - Chr5:10515564-10515583 None:intergenic 40.0%
TACCCACATACCATATGGAT+AGG + Chr5:10518834-10518853 MsG0580024836.01.T01:intron 40.0%
TAGACATCATGAACTACCGA+TGG - Chr5:10519546-10519565 None:intergenic 40.0%
TAGCTGATACCAGATAAGCT+AGG + Chr5:10515225-10515244 MsG0580024836.01.T01:intron 40.0%
TATAAGCTAACAGGGACCTT+TGG - Chr5:10518065-10518084 None:intergenic 40.0%
TATATCATCCTTGAAGCGAG+TGG - Chr5:10515151-10515170 None:intergenic 40.0%
TCAATAGGTAGAGGGAGATT+AGG + Chr5:10520499-10520518 MsG0580024836.01.T01:three_prime_UTR 40.0%
TCGTTGGCATGAAGATAAAC+TGG - Chr5:10516566-10516585 None:intergenic 40.0%
TGAACCGTGAACTAGTTCAA+TGG + Chr5:10516678-10516697 MsG0580024836.01.T01:intron 40.0%
TGCCTATCCATATGGTATGT+GGG - Chr5:10518839-10518858 None:intergenic 40.0%
TGGAATTAGGAAGAAGGAGA+AGG - Chr5:10514762-10514781 None:intergenic 40.0%
TGGACAGTTGTAACAGAAGA+TGG + Chr5:10520178-10520197 MsG0580024836.01.T01:CDS 40.0%
TGTGTTCAAACTGAGCTGAA+AGG - Chr5:10520207-10520226 None:intergenic 40.0%
TTCCACAAGGGAAAAACCAA+AGG + Chr5:10518046-10518065 MsG0580024836.01.T01:intron 40.0%
TTCTCTCTTTCCTTTCCACT+TGG + Chr5:10518676-10518695 MsG0580024836.01.T01:intron 40.0%
! ACAGAACCTATGCTGACTAT+GGG + Chr5:10520124-10520143 MsG0580024836.01.T01:intron 40.0%
! ATCGACAACTTTCTTTTGCG+GGG + Chr5:10516505-10516524 MsG0580024836.01.T01:CDS 40.0%
! CATCGACAACTTTCTTTTGC+GGG + Chr5:10516504-10516523 MsG0580024836.01.T01:CDS 40.0%
! CCCATCAGGTGTTATCAAAA+GGG - Chr5:10520230-10520249 None:intergenic 40.0%
! TACAGAACCTATGCTGACTA+TGG + Chr5:10520123-10520142 MsG0580024836.01.T01:intron 40.0%
! TGTCTGTAACGGAATAGTTG+AGG - Chr5:10514730-10514749 None:intergenic 40.0%
! TTATTGGTTAGTGCGGGAAA+AGG + Chr5:10515632-10515651 MsG0580024836.01.T01:intron 40.0%
! TTTAACTTCTGTTGACAGCC+AGG + Chr5:10515774-10515793 MsG0580024836.01.T01:intron 40.0%
! TTTTACCAAGCGCTAGATCA+GGG - Chr5:10519126-10519145 None:intergenic 40.0%
! TTTTTACCAAGCGCTAGATC+AGG - Chr5:10519127-10519146 None:intergenic 40.0%
!! ACCCTTTTGATAACACCTGA+TGG + Chr5:10520226-10520245 MsG0580024836.01.T01:CDS 40.0%
!! CCCTTTTGATAACACCTGAT+GGG + Chr5:10520227-10520246 MsG0580024836.01.T01:CDS 40.0%
!! CCTTTTGATAACACCTGATG+GGG + Chr5:10520228-10520247 MsG0580024836.01.T01:CDS 40.0%
!!! TGACGGGCAAAAGTATTTTG+AGG - Chr5:10518233-10518252 None:intergenic 40.0%
!!! TTTTGCTTTTTGTTCGGGTG+GGG + Chr5:10516114-10516133 MsG0580024836.01.T01:intron 40.0%
AATAACAGGGCACAGACGTA+TGG - Chr5:10516617-10516636 None:intergenic 45.0%
AATCGTAAACGCTTGAGACC+TGG + Chr5:10514920-10514939 MsG0580024836.01.T01:CDS 45.0%
AATGAGACACGGGGTGTATA+AGG + Chr5:10517073-10517092 MsG0580024836.01.T01:intron 45.0%
ACTACTGTACTACTGAGACG+AGG - Chr5:10516179-10516198 None:intergenic 45.0%
AGGTCTCAAGCGTTTACGAT+TGG - Chr5:10514921-10514940 None:intergenic 45.0%
AGTAACTAGGCCTACAGTAC+TGG + Chr5:10516995-10517014 MsG0580024836.01.T01:intron 45.0%
ATAAGCTCGCGAGGAAGTAA+CGG + Chr5:10515461-10515480 MsG0580024836.01.T01:intron 45.0%
ATAGACTAAGGGGTTGAAGG+AGG + Chr5:10517935-10517954 MsG0580024836.01.T01:intron 45.0%
ATATGCTGGCACCTTAGTCA+AGG + Chr5:10515102-10515121 MsG0580024836.01.T01:CDS 45.0%
ATTGCAACAGCTCAGATGTG+GGG + Chr5:10518957-10518976 MsG0580024836.01.T01:intron 45.0%
CAAAACCTTATTCCAGCAGG+GGG - Chr5:10519843-10519862 None:intergenic 45.0%
CAGTTACCTCGATCACTTTC+TGG + Chr5:10514851-10514870 MsG0580024836.01.T01:CDS 45.0%
CATGGCAATGCCTATCCATA+TGG - Chr5:10518847-10518866 None:intergenic 45.0%
CCTGAGGAATTACAGAGAAG+GGG + Chr5:10516808-10516827 MsG0580024836.01.T01:intron 45.0%
GAATTGCAACAGCTCAGATG+TGG + Chr5:10518955-10518974 MsG0580024836.01.T01:intron 45.0%
GCAATATCGATATGTGCACC+TGG + Chr5:10517428-10517447 MsG0580024836.01.T01:CDS 45.0%
GCTCAGGTTCTTCAATATGC+TGG + Chr5:10515088-10515107 MsG0580024836.01.T01:CDS 45.0%
GGAAAACCACCATAACCAAG+AGG - Chr5:10515867-10515886 None:intergenic 45.0%
GTTAAGCCAGAAAGTGATCG+AGG - Chr5:10514860-10514879 None:intergenic 45.0%
TAAAATCCATGGTTCCGCCA+GGG + Chr5:10514996-10515015 MsG0580024836.01.T01:CDS 45.0%
TAGCAGGGCAGTAAGTAACT+AGG + Chr5:10516982-10517001 MsG0580024836.01.T01:intron 45.0%
TGCATAGACTAAGGGGTTGA+AGG + Chr5:10517932-10517951 MsG0580024836.01.T01:intron 45.0%
TGCTATATTGTTGGAGGGGA+CGG + Chr5:10516235-10516254 MsG0580024836.01.T01:intron 45.0%
! AGGACATAAGCGTTGTAAGC+AGG - Chr5:10516208-10516227 None:intergenic 45.0%
! CCCCATCAGGTGTTATCAAA+AGG - Chr5:10520231-10520250 None:intergenic 45.0%
! GGACATAAGCGTTGTAAGCA+GGG - Chr5:10516207-10516226 None:intergenic 45.0%
! GGTGTTGTGCAACAGTTTGT+TGG + Chr5:10517631-10517650 MsG0580024836.01.T01:CDS 45.0%
! TGACACCAAGGGTATATTCC+TGG - Chr5:10519447-10519466 None:intergenic 45.0%
! TGGCAGTGTGGCCATATTTT+TGG - Chr5:10518778-10518797 None:intergenic 45.0%
!! GGAGGCTTTGTTATGTCCTT+GGG - Chr5:10514971-10514990 None:intergenic 45.0%
!! TGCAACAGTTTGTTGGCCAT+GGG + Chr5:10517638-10517657 MsG0580024836.01.T01:CDS 45.0%
!! TGGAGGCTTTGTTATGTCCT+TGG - Chr5:10514972-10514991 None:intergenic 45.0%
!!! GACCTTTGGTTTTTCCCTTG+TGG - Chr5:10518051-10518070 None:intergenic 45.0%
AACAGCTCAGATGTGGGGAA+GGG + Chr5:10518962-10518981 MsG0580024836.01.T01:intron 50.0%
ACCAGATTCACGTTCGCTTG+AGG + Chr5:10515932-10515951 MsG0580024836.01.T01:CDS 50.0%
ACCTCAAGCGAACGTGAATC+TGG - Chr5:10515936-10515955 None:intergenic 50.0%
AGAGGGTAGTGAAAGTGGAG+TGG + Chr5:10519071-10519090 MsG0580024836.01.T01:intron 50.0%
AGCAGGGGGAATCAGCTATA+TGG - Chr5:10519829-10519848 None:intergenic 50.0%
ATCGATATGTGCACCTGGAG+TGG + Chr5:10517433-10517452 MsG0580024836.01.T01:CDS 50.0%
ATGCTGCCCATAGTCAGCAT+AGG - Chr5:10520133-10520152 None:intergenic 50.0%
CACCAAATCACAGCCATCGT+TGG - Chr5:10516582-10516601 None:intergenic 50.0%
CACCATAACCAAGAGGAGAC+GGG - Chr5:10515860-10515879 None:intergenic 50.0%
CCACCATAACCAAGAGGAGA+CGG - Chr5:10515861-10515880 None:intergenic 50.0%
CCCCTTCTCTGTAATTCCTC+AGG - Chr5:10516811-10516830 None:intergenic 50.0%
CGACGTGGAGAAACAATTCC+AGG - Chr5:10514941-10514960 None:intergenic 50.0%
GAAAAACACGTCCAACCCCA+TGG - Chr5:10517657-10517676 None:intergenic 50.0%
GAAAGTGGAGTGGAGTGGAA+TGG + Chr5:10519081-10519100 MsG0580024836.01.T01:intron 50.0%
GCAGCATCAATCCAGTGATG+TGG + Chr5:10520146-10520165 MsG0580024836.01.T01:CDS 50.0%
GTAAAATCCATGGTTCCGCC+AGG + Chr5:10514995-10515014 MsG0580024836.01.T01:CDS 50.0%
GTAGTGAAAGTGGAGTGGAG+TGG + Chr5:10519076-10519095 MsG0580024836.01.T01:intron 50.0%
GTCATAATCTCAGCCCCATC+AGG - Chr5:10520244-10520263 None:intergenic 50.0%
TAAGGGGTTGAAGGAGGCAA+GGG + Chr5:10517941-10517960 MsG0580024836.01.T01:intron 50.0%
TACCCGTCTCCTCTTGGTTA+TGG + Chr5:10515855-10515874 MsG0580024836.01.T01:CDS 50.0%
TACGTTGGCACCAGTACTGT+AGG - Chr5:10517008-10517027 None:intergenic 50.0%
TATATTGTTGGAGGGGACGG+AGG + Chr5:10516238-10516257 MsG0580024836.01.T01:intron 50.0%
TCCACGTCGAAAAGTTCCCA+AGG + Chr5:10514952-10514971 MsG0580024836.01.T01:CDS 50.0%
TGATTCCCCCTGCTGGAATA+AGG + Chr5:10519835-10519854 MsG0580024836.01.T01:intron 50.0%
TGCCAACGATGGCTGTGATT+TGG + Chr5:10516577-10516596 MsG0580024836.01.T01:CDS 50.0%
! ATATAGCTGATTCCCCCTGC+TGG + Chr5:10519828-10519847 MsG0580024836.01.T01:intron 50.0%
! GGAGGTGTACCACTTATTCC+TGG + Chr5:10517145-10517164 MsG0580024836.01.T01:intron 50.0%
! TCCTTGGGAACTTTTCGACG+TGG - Chr5:10514956-10514975 None:intergenic 50.0%
!! CTTTTTCGCCACTCGCTTCA+AGG + Chr5:10515140-10515159 MsG0580024836.01.T01:intron 50.0%
!! GCAACAGTTTGTTGGCCATG+GGG + Chr5:10517639-10517658 MsG0580024836.01.T01:CDS 50.0%
!! GTGCAACAGTTTGTTGGCCA+TGG + Chr5:10517637-10517656 MsG0580024836.01.T01:CDS 50.0%
!! TTGCGGGGATGTTGATGATG+AGG + Chr5:10516520-10516539 MsG0580024836.01.T01:CDS 50.0%
ACAGCTCAGATGTGGGGAAG+GGG + Chr5:10518963-10518982 MsG0580024836.01.T01:intron 55.0%
CAACAGCTCAGATGTGGGGA+AGG + Chr5:10518961-10518980 MsG0580024836.01.T01:intron 55.0%
CCGTCTCCTCTTGGTTATGG+TGG + Chr5:10515858-10515877 MsG0580024836.01.T01:CDS 55.0%
CTAAGGGGTTGAAGGAGGCA+AGG + Chr5:10517940-10517959 MsG0580024836.01.T01:intron 55.0%
GCAGCGTAGGAATCGATCTC+CGG - Chr5:10514689-10514708 None:intergenic 55.0%
GGTTGAAGGAGGCAAGGGTT+TGG + Chr5:10517946-10517965 MsG0580024836.01.T01:intron 55.0%
TCATGTCCACTCGCAATCCC+TGG - Chr5:10515016-10515035 None:intergenic 55.0%
TGACTCCCTGATCTAGCGCT+TGG + Chr5:10519118-10519137 MsG0580024836.01.T01:intron 55.0%
! CTTTTTGTTCGGGTGGGGAG+GGG + Chr5:10516119-10516138 MsG0580024836.01.T01:intron 55.0%
! GCTTTTTGTTCGGGTGGGGA+GGG + Chr5:10516118-10516137 MsG0580024836.01.T01:intron 55.0%
! TTTTTGTTCGGGTGGGGAGG+GGG + Chr5:10516120-10516139 MsG0580024836.01.T01:intron 55.0%
!! CAGTTTGTTGGCCATGGGGT+TGG + Chr5:10517643-10517662 MsG0580024836.01.T01:CDS 55.0%
!! TGCTTTTTGTTCGGGTGGGG+AGG + Chr5:10516117-10516136 MsG0580024836.01.T01:intron 55.0%
!! TTCTGGAAGGCTTGCTGCTC+AGG + Chr5:10515072-10515091 MsG0580024836.01.T01:CDS 55.0%
TGTCCACTCGCAATCCCTGG+CGG - Chr5:10515013-10515032 None:intergenic 60.0%
! AGATGTGGGGAAGGGGTGCA+TGG + Chr5:10518970-10518989 MsG0580024836.01.T01:intron 60.0%
! GATGTGGGGAAGGGGTGCAT+GGG + Chr5:10518971-10518990 MsG0580024836.01.T01:intron 60.0%
!! ATTGGTGGCGTGAGCAGCGT+AGG - Chr5:10514702-10514721 None:intergenic 60.0%
CAGTGATGCGCTGCTGCTCG+CGG - Chr5:10514650-10514669 None:intergenic 65.0%
CGCAATCCCTGGCGGAACCA+TGG - Chr5:10515005-10515024 None:intergenic 65.0%
GGTGCGTACCCGTCTCCTCT+TGG + Chr5:10515849-10515868 MsG0580024836.01.T01:CDS 65.0%
GTTCCGCCAGGGATTGCGAG+TGG + Chr5:10515007-10515026 MsG0580024836.01.T01:CDS 65.0%
TGTTGGAGGGGACGGAGGCT+AGG + Chr5:10516243-10516262 MsG0580024836.01.T01:intron 65.0%
! GGTGGGGAGGGGGACTAGCA+TGG + Chr5:10516130-10516149 MsG0580024836.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr5 gene 10514577 10520598 10514577 ID=MsG0580024836.01;Name=MsG0580024836.01
Chr5 mRNA 10514577 10520598 10514577 ID=MsG0580024836.01.T01;Parent=MsG0580024836.01;Name=MsG0580024836.01.T01;_AED=0.49;_eAED=0.50;_QI=60|0.87|0.88|1|0.87|0.77|9|325|364
Chr5 exon 10514577 10514751 10514577 ID=MsG0580024836.01.T01:exon:1962;Parent=MsG0580024836.01.T01
Chr5 exon 10514831 10515123 10514831 ID=MsG0580024836.01.T01:exon:1963;Parent=MsG0580024836.01.T01
Chr5 exon 10515792 10515953 10515792 ID=MsG0580024836.01.T01:exon:1964;Parent=MsG0580024836.01.T01
Chr5 exon 10516031 10516072 10516031 ID=MsG0580024836.01.T01:exon:1965;Parent=MsG0580024836.01.T01
Chr5 exon 10516488 10516598 10516488 ID=MsG0580024836.01.T01:exon:1966;Parent=MsG0580024836.01.T01
Chr5 exon 10517404 10517483 10517404 ID=MsG0580024836.01.T01:exon:1967;Parent=MsG0580024836.01.T01
Chr5 exon 10517606 10517703 10517606 ID=MsG0580024836.01.T01:exon:1968;Parent=MsG0580024836.01.T01
Chr5 exon 10518330 10518377 10518330 ID=MsG0580024836.01.T01:exon:1969;Parent=MsG0580024836.01.T01
Chr5 exon 10520128 10520598 10520128 ID=MsG0580024836.01.T01:exon:1970;Parent=MsG0580024836.01.T01
Chr5 five_prime_UTR 10514577 10514636 10514577 ID=MsG0580024836.01.T01:five_prime_utr;Parent=MsG0580024836.01.T01
Chr5 CDS 10514637 10514751 10514637 ID=MsG0580024836.01.T01:cds;Parent=MsG0580024836.01.T01
Chr5 CDS 10514831 10515123 10514831 ID=MsG0580024836.01.T01:cds;Parent=MsG0580024836.01.T01
Chr5 CDS 10515792 10515953 10515792 ID=MsG0580024836.01.T01:cds;Parent=MsG0580024836.01.T01
Chr5 CDS 10516031 10516072 10516031 ID=MsG0580024836.01.T01:cds;Parent=MsG0580024836.01.T01
Chr5 CDS 10516488 10516598 10516488 ID=MsG0580024836.01.T01:cds;Parent=MsG0580024836.01.T01
Chr5 CDS 10517404 10517483 10517404 ID=MsG0580024836.01.T01:cds;Parent=MsG0580024836.01.T01
Chr5 CDS 10517606 10517703 10517606 ID=MsG0580024836.01.T01:cds;Parent=MsG0580024836.01.T01
Chr5 CDS 10518330 10518377 10518330 ID=MsG0580024836.01.T01:cds;Parent=MsG0580024836.01.T01
Chr5 CDS 10520128 10520273 10520128 ID=MsG0580024836.01.T01:cds;Parent=MsG0580024836.01.T01
Chr5 three_prime_UTR 10520274 10520598 10520274 ID=MsG0580024836.01.T01:three_prime_utr;Parent=MsG0580024836.01.T01
Gene Sequence

>MsG0580024836.01.T01

ATGGCTATGGCCGCGAGCAGCAGCGCATCACTGTTAAAGTCTTCTTTCACCGGAGATCGATTCCTACGCTGCTCACGCCACCAATCACTTCCTCAACTATTCCGTTACAGACAAGGAATGAATCATTTTTCGATGCAGTTACCTCGATCACTTTCTGGCTTAACCAATCTCTTATTCAATAGAAGGAACATTGATGACAACACCAATCGTAAACGCTTGAGACCTGGAATTGTTTCTCCACGTCGAAAAGTTCCCAAGGACATAACAAAGCCTCCATATGTAAAATCCATGGTTCCGCCAGGGATTGCGAGTGGACATGAAGTACATGATGAAAAGGGGATTGAATGTATGAGAGCTTCTGGAAGGCTTGCTGCTCAGGTTCTTCAATATGCTGGCACCTTAGTCAAGCCAGGCATAACGACTGATGAAATTGACGAAGCAGTTCACCAAATGATAATTGATAATGGTGCGTACCCGTCTCCTCTTGGTTATGGTGGTTTTCCAAAGAGTGTATGCACATCTGTGAATGAATGCATTTGCCATGGAATACCAGATTCACGTTCGCTTGAGGATGGTGATATAATCAACATTGATGTTACCGTTTATCTAAATGGTTATCATGGTGACACATCGACAACTTTCTTTTGCGGGGATGTTGATGATGAGGCTAAAAAACTAGTTCAGGTACCAGTTTATCTTCATGCCAACGATGGCTGTGATTTGGTCACCAAAGAATGCCTAGATAAAGCAATATCGATATGTGCACCTGGAGTGGAATACAAGAAAATTGGCCGAACAATTCATGATCATGCAGATAAATATGGATATGGTGTTGTGCAACAGTTTGTTGGCCATGGGGTTGGACGTGTTTTTCATGCTGATCCAGTTATTCTGCACTTCAGAAACAATGAAGATGGACGTATGATGTTAAATCAAACCTTCACGATTGAACCTATGCTGACTATGGGCAGCATCAATCCAGTGATGTGGAAAGACAATTGGACAGTTGTAACAGAAGATGGAAGCCTTTCAGCTCAGTTTGAACACACCCTTTTGATAACACCTGATGGGGCTGAGATTATGACTCAATGCTGA

Protein sequence

>MsG0580024836.01.T01

MAMAASSSASLLKSSFTGDRFLRCSRHQSLPQLFRYRQGMNHFSMQLPRSLSGLTNLLFNRRNIDDNTNRKRLRPGIVSPRRKVPKDITKPPYVKSMVPPGIASGHEVHDEKGIECMRASGRLAAQVLQYAGTLVKPGITTDEIDEAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRSLEDGDIINIDVTVYLNGYHGDTSTTFFCGDVDDEAKKLVQVPVYLHANDGCDLVTKECLDKAISICAPGVEYKKIGRTIHDHADKYGYGVVQQFVGHGVGRVFHADPVILHFRNNEDGRMMLNQTFTIEPMLTMGSINPVMWKDNWTVVTEDGSLSAQFEHTLLITPDGAEIMTQC*