Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580026022.01.T01 | RHN55253.1 | 72.845 | 232 | 38 | 1 | 1 | 207 | 1 | 232 | 1.47E-114 | 336 |
MsG0580026022.01.T03 | RHN55253.1 | 79.31 | 232 | 40 | 1 | 1 | 224 | 1 | 232 | 6.75E-130 | 375 |
MsG0580026022.01.T02 | RHN55253.1 | 71.983 | 232 | 36 | 1 | 1 | 203 | 1 | 232 | 5.30E-113 | 332 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580026022.01.T01 | A0A396HRY8 | 72.845 | 232 | 38 | 1 | 1 | 207 | 1 | 232 | 7.00e-115 | 336 |
MsG0580026022.01.T02 | A0A396HRY8 | 71.983 | 232 | 36 | 1 | 1 | 203 | 1 | 232 | 2.53e-113 | 332 |
MsG0580026022.01.T03 | A0A396HRY8 | 79.310 | 232 | 40 | 1 | 1 | 224 | 1 | 232 | 3.22e-130 | 375 |
Gene ID | Type | Classification |
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Gene ID | Type | Classification |
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Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580026022.01.T01 | MTR_5g006240 | 59.031 | 227 | 73 | 2 | 1 | 207 | 1 | 227 | 6.58e-92 | 268 |
MsG0580026022.01.T01 | MTR_5g037840 | 72.727 | 132 | 11 | 1 | 101 | 207 | 1 | 132 | 1.44e-61 | 188 |
MsG0580026022.01.T01 | MTR_5g037810 | 71.212 | 132 | 13 | 1 | 101 | 207 | 1 | 132 | 4.40e-60 | 184 |
MsG0580026022.01.T01 | MTR_5g094680 | 37.879 | 198 | 106 | 6 | 27 | 207 | 25 | 222 | 1.33e-33 | 120 |
MsG0580026022.01.T01 | MTR_5g037850 | 44.094 | 127 | 61 | 1 | 3 | 129 | 2 | 118 | 8.90e-28 | 102 |
MsG0580026022.01.T01 | MTR_8g085520 | 39.474 | 152 | 65 | 5 | 77 | 207 | 6 | 151 | 2.20e-24 | 94.7 |
MsG0580026022.01.T01 | MTR_8g085550 | 39.865 | 148 | 70 | 5 | 77 | 207 | 6 | 151 | 4.79e-24 | 93.2 |
MsG0580026022.01.T01 | MTR_1g029860 | 39.130 | 138 | 72 | 4 | 76 | 206 | 46 | 178 | 1.62e-22 | 90.1 |
MsG0580026022.01.T01 | MTR_5g037830 | 41.748 | 103 | 50 | 1 | 3 | 105 | 2 | 94 | 2.83e-19 | 79.3 |
MsG0580026022.01.T01 | MTR_1g029910 | 33.721 | 172 | 89 | 5 | 46 | 206 | 37 | 194 | 2.14e-18 | 79.7 |
MsG0580026022.01.T01 | MTR_7g093310 | 34.437 | 151 | 85 | 5 | 59 | 207 | 1 | 139 | 5.69e-17 | 74.7 |
MsG0580026022.01.T01 | MTR_8g085530 | 64.151 | 53 | 17 | 1 | 155 | 205 | 245 | 297 | 6.47e-17 | 77.4 |
MsG0580026022.01.T01 | MTR_8g102170 | 36.691 | 139 | 69 | 5 | 8 | 135 | 7 | 137 | 3.93e-15 | 69.7 |
MsG0580026022.01.T03 | MTR_5g006240 | 63.436 | 227 | 80 | 2 | 1 | 224 | 1 | 227 | 1.74e-97 | 283 |
MsG0580026022.01.T03 | MTR_5g037840 | 84.848 | 132 | 12 | 1 | 101 | 224 | 1 | 132 | 2.00e-76 | 226 |
MsG0580026022.01.T03 | MTR_5g037810 | 82.576 | 132 | 15 | 1 | 101 | 224 | 1 | 132 | 7.57e-75 | 223 |
MsG0580026022.01.T03 | MTR_5g094680 | 36.058 | 208 | 113 | 6 | 27 | 224 | 25 | 222 | 5.11e-33 | 119 |
MsG0580026022.01.T03 | MTR_5g037850 | 44.094 | 127 | 61 | 1 | 3 | 129 | 2 | 118 | 2.01e-27 | 101 |
MsG0580026022.01.T03 | MTR_8g085520 | 41.026 | 156 | 74 | 5 | 77 | 224 | 6 | 151 | 1.15e-26 | 101 |
MsG0580026022.01.T03 | MTR_8g085550 | 40.789 | 152 | 80 | 4 | 77 | 224 | 6 | 151 | 2.25e-26 | 99.8 |
MsG0580026022.01.T03 | MTR_1g029860 | 34.839 | 155 | 72 | 4 | 76 | 223 | 46 | 178 | 2.47e-20 | 85.1 |
MsG0580026022.01.T03 | MTR_5g037830 | 41.748 | 103 | 50 | 1 | 3 | 105 | 2 | 94 | 5.71e-19 | 79.0 |
MsG0580026022.01.T03 | MTR_8g085530 | 64.151 | 53 | 17 | 1 | 172 | 222 | 245 | 297 | 6.77e-17 | 78.2 |
MsG0580026022.01.T03 | MTR_8g102170 | 37.762 | 143 | 70 | 5 | 8 | 139 | 7 | 141 | 1.21e-16 | 74.3 |
MsG0580026022.01.T03 | MTR_1g029910 | 30.688 | 189 | 89 | 6 | 46 | 223 | 37 | 194 | 2.96e-16 | 74.3 |
MsG0580026022.01.T03 | MTR_7g093310 | 30.952 | 168 | 85 | 4 | 59 | 224 | 1 | 139 | 1.57e-14 | 68.6 |
MsG0580026022.01.T02 | MTR_5g006240 | 57.269 | 227 | 73 | 2 | 1 | 203 | 1 | 227 | 2.14e-89 | 262 |
MsG0580026022.01.T02 | MTR_5g037840 | 71.212 | 132 | 9 | 1 | 101 | 203 | 1 | 132 | 1.25e-59 | 183 |
MsG0580026022.01.T02 | MTR_5g037810 | 69.697 | 132 | 11 | 1 | 101 | 203 | 1 | 132 | 2.85e-58 | 180 |
MsG0580026022.01.T02 | MTR_5g094680 | 35.859 | 198 | 106 | 6 | 27 | 203 | 25 | 222 | 6.03e-31 | 113 |
MsG0580026022.01.T02 | MTR_5g037850 | 44.628 | 121 | 57 | 1 | 3 | 123 | 2 | 112 | 2.31e-26 | 98.2 |
MsG0580026022.01.T02 | MTR_8g085520 | 38.158 | 152 | 63 | 5 | 77 | 203 | 6 | 151 | 3.71e-23 | 91.3 |
MsG0580026022.01.T02 | MTR_8g085550 | 39.041 | 146 | 70 | 3 | 77 | 203 | 6 | 151 | 1.18e-22 | 89.7 |
MsG0580026022.01.T02 | MTR_1g029860 | 39.552 | 134 | 73 | 4 | 76 | 202 | 46 | 178 | 2.09e-22 | 89.7 |
MsG0580026022.01.T02 | MTR_1g029910 | 34.524 | 168 | 89 | 5 | 46 | 202 | 37 | 194 | 1.83e-20 | 85.1 |
MsG0580026022.01.T02 | MTR_5g037830 | 41.748 | 103 | 50 | 1 | 3 | 105 | 2 | 94 | 3.32e-19 | 79.0 |
MsG0580026022.01.T02 | MTR_7g093310 | 33.557 | 149 | 85 | 4 | 59 | 203 | 1 | 139 | 5.20e-17 | 74.7 |
MsG0580026022.01.T02 | MTR_8g085530 | 64.151 | 53 | 17 | 1 | 151 | 201 | 245 | 297 | 6.25e-17 | 77.4 |
MsG0580026022.01.T02 | MTR_8g102170 | 37.008 | 127 | 62 | 4 | 8 | 123 | 7 | 126 | 6.36e-15 | 68.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 42 sgRNAs with CRISPR-Local
Find 41 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCAACAAGTCCAACAAATTA+TGG | 0.188220 | 5:-29268237 | MsG0580026022.01.T03:CDS |
TTGTTTGTCGGATCATGTTC+TGG | 0.209035 | 5:+29268548 | None:intergenic |
CGAGTGCATTCTTCCATATT+TGG | 0.263214 | 5:+29268383 | None:intergenic |
CCATAATTTGTTGGACTTGT+TGG | 0.304501 | 5:+29268237 | None:intergenic |
AGATCTGATTCTACCAAATA+TGG | 0.314815 | 5:-29268396 | MsG0580026022.01.T03:CDS |
AGAACAGTGTTCAATTTGTT+TGG | 0.318551 | 5:-29268168 | MsG0580026022.01.T03:CDS |
AATGTATTGTTCCATGGATT+CGG | 0.324161 | 5:-29268085 | MsG0580026022.01.T03:CDS |
TATGGACAGGACTCACATTT+AGG | 0.380502 | 5:+29268657 | None:intergenic |
TATATAAGTTCAAATGATAA+TGG | 0.383029 | 5:-29268260 | MsG0580026022.01.T03:CDS |
ATGTATTGTTCCATGGATTC+GGG | 0.386613 | 5:-29268084 | MsG0580026022.01.T03:CDS |
CCAACAGACCCATAATTTGT+TGG | 0.387189 | 5:+29268228 | None:intergenic |
AATTGTCCTTCTCGTGACTT+TGG | 0.391512 | 5:-29268191 | MsG0580026022.01.T03:CDS |
TGTTTGTCGGATCATGTTCT+GGG | 0.409755 | 5:+29268549 | None:intergenic |
TCTTGTGGATTATATAAGAT+TGG | 0.411181 | 5:+29268632 | None:intergenic |
CACAAGACATTGCTACTTTG+AGG | 0.423234 | 5:-29268616 | MsG0580026022.01.T03:CDS |
ATCTTATGCAATTGTATGTA+TGG | 0.424672 | 5:-29268473 | MsG0580026022.01.T03:CDS |
TCATGTTGACACACTAGATA+TGG | 0.441348 | 5:-29268303 | MsG0580026022.01.T03:CDS |
GATTATATAAGATTGGTCTA+TGG | 0.449016 | 5:+29268639 | None:intergenic |
CAACAAGTCCAACAAATTAT+GGG | 0.449453 | 5:-29268236 | MsG0580026022.01.T03:CDS |
CAATTGCATAAGATATCAAT+AGG | 0.456377 | 5:+29268482 | None:intergenic |
GTTGATTGTAGTTGTAAAGT+TGG | 0.466309 | 5:+29268520 | None:intergenic |
ACAAGACATTGCTACTTTGA+GGG | 0.480207 | 5:-29268615 | MsG0580026022.01.T03:CDS |
ACAAAGAATGTATTGTTCCA+TGG | 0.480573 | 5:-29268091 | MsG0580026022.01.T03:CDS |
CCAACAAATTATGGGTCTGT+TGG | 0.489893 | 5:-29268228 | MsG0580026022.01.T03:CDS |
GGAAGAATGCACTCGACAAA+TGG | 0.496016 | 5:-29268375 | MsG0580026022.01.T03:CDS |
TTGACGCATTCCCGAATCCA+TGG | 0.498056 | 5:+29268074 | None:intergenic |
ACAGTGTTCAATTTGTTTGG+AGG | 0.506076 | 5:-29268165 | MsG0580026022.01.T03:CDS |
AAGTTGGACAAATTGTTTGT+CGG | 0.517350 | 5:+29268536 | None:intergenic |
TATAAGATTGGTCTATGGAC+AGG | 0.519396 | 5:+29268644 | None:intergenic |
CAAGACATTGCTACTTTGAG+GGG | 0.533959 | 5:-29268614 | MsG0580026022.01.T03:CDS |
AACTACAATCAACAGAGTCT+TGG | 0.543005 | 5:-29268510 | MsG0580026022.01.T03:CDS |
ATCAGATCTAATAAGTTAGT+CGG | 0.544879 | 5:+29268410 | None:intergenic |
GCAGACGAAGGAACGATCCA+TGG | 0.545631 | 5:+29268679 | None:intergenic |
CACACTAGATATGGTAGAAG+AGG | 0.547125 | 5:-29268294 | MsG0580026022.01.T03:CDS |
CTCAAAGTAGCAATGTCTTG+TGG | 0.575298 | 5:+29268617 | None:intergenic |
ATGGTCGCACTCAACAATGA+AGG | 0.582431 | 5:-29268356 | MsG0580026022.01.T03:CDS |
ATTATTTGACTTCTACACAA+TGG | 0.588909 | 5:+29268029 | None:intergenic |
GTTTGTCGGATCATGTTCTG+GGG | 0.602354 | 5:+29268550 | None:intergenic |
AGAAAAGACGTTGTGTACGA+CGG | 0.634042 | 5:+29268439 | None:intergenic |
TTTGTCGGATCATGTTCTGG+GGG | 0.645602 | 5:+29268551 | None:intergenic |
TGTTCTCCAAAGTCACGAGA+AGG | 0.657198 | 5:+29268185 | None:intergenic |
ACTCACATTTAGGCAGACGA+AGG | 0.701700 | 5:+29268667 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATATAAGTTCAAATGATAA+TGG | - | Chr5:29268442-29268461 | MsG0580026022.01.T03:CDS | 15.0% |
! | ATCAGATCTAATAAGTTAGT+CGG | + | Chr5:29268295-29268314 | None:intergenic | 25.0% |
! | ATCTTATGCAATTGTATGTA+TGG | - | Chr5:29268229-29268248 | MsG0580026022.01.T03:CDS | 25.0% |
! | CAATTGCATAAGATATCAAT+AGG | + | Chr5:29268223-29268242 | None:intergenic | 25.0% |
!! | ATTATTTGACTTCTACACAA+TGG | + | Chr5:29268676-29268695 | None:intergenic | 25.0% |
!! | TCTTGTGGATTATATAAGAT+TGG | + | Chr5:29268073-29268092 | None:intergenic | 25.0% |
!!! | GATTATATAAGATTGGTCTA+TGG | + | Chr5:29268066-29268085 | None:intergenic | 25.0% |
AAGTTGGACAAATTGTTTGT+CGG | + | Chr5:29268169-29268188 | None:intergenic | 30.0% | |
AATGTATTGTTCCATGGATT+CGG | - | Chr5:29268617-29268636 | MsG0580026022.01.T03:CDS | 30.0% | |
ACAAAGAATGTATTGTTCCA+TGG | - | Chr5:29268611-29268630 | MsG0580026022.01.T03:CDS | 30.0% | |
AGATCTGATTCTACCAAATA+TGG | - | Chr5:29268306-29268325 | MsG0580026022.01.T03:CDS | 30.0% | |
CAACAAGTCCAACAAATTAT+GGG | - | Chr5:29268466-29268485 | MsG0580026022.01.T03:CDS | 30.0% | |
GTTGATTGTAGTTGTAAAGT+TGG | + | Chr5:29268185-29268204 | None:intergenic | 30.0% | |
! | AGAACAGTGTTCAATTTGTT+TGG | - | Chr5:29268534-29268553 | MsG0580026022.01.T03:CDS | 30.0% |
AACTACAATCAACAGAGTCT+TGG | - | Chr5:29268192-29268211 | MsG0580026022.01.T03:CDS | 35.0% | |
ATGTATTGTTCCATGGATTC+GGG | - | Chr5:29268618-29268637 | MsG0580026022.01.T03:CDS | 35.0% | |
CCAACAAGTCCAACAAATTA+TGG | - | Chr5:29268465-29268484 | MsG0580026022.01.T03:CDS | 35.0% | |
TCATGTTGACACACTAGATA+TGG | - | Chr5:29268399-29268418 | MsG0580026022.01.T03:CDS | 35.0% | |
! | ACAGTGTTCAATTTGTTTGG+AGG | - | Chr5:29268537-29268556 | MsG0580026022.01.T03:CDS | 35.0% |
!! | ACAAGACATTGCTACTTTGA+GGG | - | Chr5:29268087-29268106 | MsG0580026022.01.T03:CDS | 35.0% |
!! | CCATAATTTGTTGGACTTGT+TGG | + | Chr5:29268468-29268487 | None:intergenic | 35.0% |
!! | TATAAGATTGGTCTATGGAC+AGG | + | Chr5:29268061-29268080 | None:intergenic | 35.0% |
AATTGTCCTTCTCGTGACTT+TGG | - | Chr5:29268511-29268530 | MsG0580026022.01.T03:CDS | 40.0% | |
AGAAAAGACGTTGTGTACGA+CGG | + | Chr5:29268266-29268285 | None:intergenic | 40.0% | |
CACACTAGATATGGTAGAAG+AGG | - | Chr5:29268408-29268427 | MsG0580026022.01.T03:CDS | 40.0% | |
CCAACAAATTATGGGTCTGT+TGG | - | Chr5:29268474-29268493 | MsG0580026022.01.T03:CDS | 40.0% | |
CGAGTGCATTCTTCCATATT+TGG | + | Chr5:29268322-29268341 | None:intergenic | 40.0% | |
CTCAAAGTAGCAATGTCTTG+TGG | + | Chr5:29268088-29268107 | None:intergenic | 40.0% | |
TATGGACAGGACTCACATTT+AGG | + | Chr5:29268048-29268067 | None:intergenic | 40.0% | |
TGTTTGTCGGATCATGTTCT+GGG | + | Chr5:29268156-29268175 | None:intergenic | 40.0% | |
TTGTTTGTCGGATCATGTTC+TGG | + | Chr5:29268157-29268176 | None:intergenic | 40.0% | |
! | CCAACAGACCCATAATTTGT+TGG | + | Chr5:29268477-29268496 | None:intergenic | 40.0% |
!! | CAAGACATTGCTACTTTGAG+GGG | - | Chr5:29268088-29268107 | MsG0580026022.01.T03:CDS | 40.0% |
!! | CACAAGACATTGCTACTTTG+AGG | - | Chr5:29268086-29268105 | MsG0580026022.01.T03:CDS | 40.0% |
ACTCACATTTAGGCAGACGA+AGG | + | Chr5:29268038-29268057 | None:intergenic | 45.0% | |
ATGGTCGCACTCAACAATGA+AGG | - | Chr5:29268346-29268365 | MsG0580026022.01.T03:CDS | 45.0% | |
GGAAGAATGCACTCGACAAA+TGG | - | Chr5:29268327-29268346 | MsG0580026022.01.T03:CDS | 45.0% | |
GTTTGTCGGATCATGTTCTG+GGG | + | Chr5:29268155-29268174 | None:intergenic | 45.0% | |
TGTTCTCCAAAGTCACGAGA+AGG | + | Chr5:29268520-29268539 | None:intergenic | 45.0% | |
TTTGTCGGATCATGTTCTGG+GGG | + | Chr5:29268154-29268173 | None:intergenic | 45.0% | |
TTGACGCATTCCCGAATCCA+TGG | + | Chr5:29268631-29268650 | None:intergenic | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr5 | gene | 29268025 | 29268699 | 29268025 | ID=MsG0580026022.01;Name=MsG0580026022.01 |
Chr5 | mRNA | 29268025 | 29268699 | 29268025 | ID=MsG0580026022.01.T01;Parent=MsG0580026022.01;Name=MsG0580026022.01.T01;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|0|0|2|0|207 |
Chr5 | exon | 29268025 | 29268252 | 29268025 | ID=MsG0580026022.01.T01:exon:33448;Parent=MsG0580026022.01.T01 |
Chr5 | exon | 29268304 | 29268699 | 29268304 | ID=MsG0580026022.01.T01:exon:33447;Parent=MsG0580026022.01.T01 |
Chr5 | CDS | 29268304 | 29268699 | 29268304 | ID=MsG0580026022.01.T01:cds;Parent=MsG0580026022.01.T01 |
Chr5 | CDS | 29268025 | 29268252 | 29268025 | ID=MsG0580026022.01.T01:cds;Parent=MsG0580026022.01.T01 |
Chr5 | mRNA | 29268025 | 29268699 | 29268025 | ID=MsG0580026022.01.T02;Parent=MsG0580026022.01;Name=MsG0580026022.01.T02;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|0|0|2|0|203 |
Chr5 | exon | 29268025 | 29268268 | 29268025 | ID=MsG0580026022.01.T02:exon:33450;Parent=MsG0580026022.01.T02 |
Chr5 | exon | 29268332 | 29268699 | 29268332 | ID=MsG0580026022.01.T02:exon:33449;Parent=MsG0580026022.01.T02 |
Chr5 | CDS | 29268332 | 29268699 | 29268332 | ID=MsG0580026022.01.T02:cds;Parent=MsG0580026022.01.T02 |
Chr5 | CDS | 29268025 | 29268268 | 29268025 | ID=MsG0580026022.01.T02:cds;Parent=MsG0580026022.01.T02 |
Chr5 | mRNA | 29268025 | 29268699 | 29268025 | ID=MsG0580026022.01.T03;Parent=MsG0580026022.01;Name=MsG0580026022.01.T03;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|224 |
Chr5 | exon | 29268025 | 29268699 | 29268025 | ID=MsG0580026022.01.T03:exon:33451;Parent=MsG0580026022.01.T03 |
Chr5 | CDS | 29268025 | 29268699 | 29268025 | ID=MsG0580026022.01.T03:cds;Parent=MsG0580026022.01.T03 |
Gene Sequence |
Protein sequence |