AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580026251.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580026251.01.T01 MTR_5g042910 98.416 505 7 1 1 505 1 504 0.0 1026
MsG0580026251.01.T01 MTR_5g042910 98.403 501 7 1 5 505 1 500 0.0 1018
MsG0580026251.01.T01 MTR_7g011790 50.543 552 205 8 18 503 1 550 0.0 535
MsG0580026251.01.T01 MTR_5g037270 43.016 451 208 10 89 496 38 482 5.59e-112 340
MsG0580026251.01.T01 MTR_6g009410 52.256 266 127 0 231 496 96 361 3.19e-99 303
MsG0580026251.01.T01 MTR_6g009410 52.256 266 127 0 231 496 173 438 4.88e-98 303
MsG0580026251.01.T01 MTR_4g116840 26.122 245 138 10 248 488 522 727 9.03e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580026251.01.T01 AT1G13970 54.563 526 172 11 18 501 1 501 0.0 524
MsG0580026251.01.T01 AT3G29180 53.463 462 143 6 111 504 51 508 6.00e-167 482
MsG0580026251.01.T01 AT3G29180 53.463 462 143 6 111 504 51 508 6.00e-167 482
MsG0580026251.01.T01 AT3G29180 53.463 462 143 6 111 504 51 508 6.00e-167 482
MsG0580026251.01.T01 AT5G39430 50.928 485 163 7 89 504 27 505 2.53e-154 450
MsG0580026251.01.T01 AT1G59650 59.559 272 109 1 226 496 214 485 4.35e-118 356
MsG0580026251.01.T01 AT1G10410 51.536 293 142 0 204 496 188 480 5.19e-106 325

Find 145 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTGGAGTAACTGGGTATT+TGG 0.136527 5:-33444212 None:intergenic
TCCTCAACACCAATTCTTTA+AGG 0.142848 5:+33445908 MsG0580026251.01.T01:CDS
CCTCTTTCTGCCTGCTTCTA+AGG 0.149414 5:+33442477 MsG0580026251.01.T01:five_prime_UTR
TAGAGAAAGACTCAAAATTT+TGG 0.181148 5:+33445797 MsG0580026251.01.T01:CDS
TAATATTACACAACACAATT+TGG 0.218679 5:-33447577 None:intergenic
TACTAATCCAGCCAACATTT+TGG 0.238317 5:-33442998 None:intergenic
AACTTTCATACTGGAGTAAC+TGG 0.240183 5:-33444220 None:intergenic
GGAAAGGAAGGAAAGATTTC+TGG 0.263361 5:+33447390 MsG0580026251.01.T01:three_prime_UTR
TCATCCTGCTTTGTAGATTC+AGG 0.266123 5:+33444242 MsG0580026251.01.T01:CDS
CATTGGTATCTATTTGACTA+TGG 0.304264 5:-33443299 None:intergenic
TTAGTAGTGGCCATGATTAT+TGG 0.311150 5:+33447628 MsG0580026251.01.T01:three_prime_UTR
GATGAGATGGAAAAGGTTAA+AGG 0.325650 5:+33445747 MsG0580026251.01.T01:CDS
TAGTTGATCAATGGGGAAAA+TGG 0.333557 5:+33447364 MsG0580026251.01.T01:three_prime_UTR
ACAAATAAATCAACACCTAT+TGG 0.333960 5:-33445016 None:intergenic
TGACCCTTGCTCTTCCCATT+TGG 0.338669 5:-33443063 None:intergenic
TGGTCAAATTCCTACCATTA+TGG 0.345688 5:+33447312 MsG0580026251.01.T01:CDS
TCAACACCTATTGGTTTGTA+AGG 0.351478 5:-33445007 None:intergenic
TTGTATATACCTTAAAGAAT+TGG 0.357864 5:-33445917 None:intergenic
GCAATGTGATTTATCTTCCT+TGG 0.359342 5:-33445043 None:intergenic
AACAACTAGGGGAACAATAG+AGG 0.374933 5:+33442382 MsG0580026251.01.T01:five_prime_UTR
AAAAGGCATTCCCTGGTTCC+TGG 0.378446 5:+33444732 MsG0580026251.01.T01:CDS
ACTTCTCATTGTAAATATAC+AGG 0.382804 5:+33445114 MsG0580026251.01.T01:CDS
GGTTTGTAAGGGCAGACATC+TGG 0.386041 5:-33444995 None:intergenic
GAACTCAGATTAAGGTCTTC+CGG 0.386301 5:-33445834 None:intergenic
ATGAGAAGTGAAGGTACATT+TGG 0.397742 5:-33445100 None:intergenic
CAGTGAGTTAGTTGATCAAT+GGG 0.397867 5:+33447356 MsG0580026251.01.T01:three_prime_UTR
ACTGGAGTAACTGGGTATTT+GGG 0.402938 5:-33444211 None:intergenic
TTTGAAGGTGATTCTTGTGC+TGG 0.407481 5:+33442801 MsG0580026251.01.T01:five_prime_UTR
AAAAGAAGGAGTCATAAATC+TGG 0.410525 5:+33443087 MsG0580026251.01.T01:CDS
CATCCTGCTTTGTAGATTCA+GGG 0.413151 5:+33444243 MsG0580026251.01.T01:CDS
TCTCTGCAGAACTCAGATTA+AGG 0.418630 5:-33445842 None:intergenic
TTCCAGAGTTGCCTTTGAAA+AGG 0.419200 5:+33443139 MsG0580026251.01.T01:CDS
GATGACTTCAGTAGTGTTCA+TGG 0.422593 5:+33444048 MsG0580026251.01.T01:CDS
TTTCTTTATCGTCCGAGAGC+AGG 0.427390 5:+33444683 MsG0580026251.01.T01:CDS
ACAGTGAGTTAGTTGATCAA+TGG 0.427969 5:+33447355 MsG0580026251.01.T01:three_prime_UTR
TTCGCCAGCGGCAACGCCAT+TGG 0.430106 5:+33444182 MsG0580026251.01.T01:CDS
TTGAAAAGGGTTAGCAATGC+AGG 0.437666 5:+33443153 MsG0580026251.01.T01:CDS
TCCAGTTTCAACTCAAGAAA+AGG 0.437886 5:+33444715 MsG0580026251.01.T01:CDS
TATATCTTAATATGTGATGA+TGG 0.443248 5:+33447516 MsG0580026251.01.T01:three_prime_UTR
ATTTCCAATGGCGTTGCCGC+TGG 0.449205 5:-33444186 None:intergenic
TTTGTCTTCAAGAGCCATAA+TGG 0.456248 5:-33447326 None:intergenic
ATGAAAACCAAAATGTTGGC+TGG 0.456829 5:+33442991 MsG0580026251.01.T01:CDS
AGGTCTATCTCAAAGTAGTT+AGG 0.458243 5:-33446671 None:intergenic
AGTTGTGGTTCAAAACCAAA+TGG 0.458980 5:+33443048 MsG0580026251.01.T01:CDS
AGCAGGATGAACTTTCATAC+TGG 0.460053 5:-33444229 None:intergenic
TCCAGAGTTGCCTTTGAAAA+GGG 0.461075 5:+33443140 MsG0580026251.01.T01:CDS
ATTGGTTTGACAGAGATTAG+TGG 0.462765 5:+33445722 MsG0580026251.01.T01:intron
CTTCGAGACCGTGTAAAGAA+TGG 0.470132 5:+33446740 MsG0580026251.01.T01:CDS
TATCCTGCTAGCATGTTCAT+TGG 0.475103 5:+33445273 MsG0580026251.01.T01:CDS
CTCCATTCTTATCTATCTTG+AGG 0.475536 5:-33444295 None:intergenic
AAGAATGGAATACTTGATGT+TGG 0.478006 5:+33446755 MsG0580026251.01.T01:CDS
ATGAGATGGAAAAGGTTAAA+GGG 0.481261 5:+33445748 MsG0580026251.01.T01:CDS
TTCTTTATCGTCCGAGAGCA+GGG 0.483123 5:+33444684 MsG0580026251.01.T01:CDS
AAGTTAGCTTCTACCACAAT+GGG 0.484343 5:+33443024 MsG0580026251.01.T01:CDS
TCCTCGATATATAGCTAAAA+CGG 0.484530 5:-33446703 None:intergenic
TCTCAGTGAATTTGTTCACC+TGG 0.488032 5:+33443197 MsG0580026251.01.T01:CDS
GTTGTCAGAGAATTTCGAAA+AGG 0.488281 5:+33445338 MsG0580026251.01.T01:CDS
AAACAATCTTCCAATAATCA+TGG 0.494905 5:-33447638 None:intergenic
TTTGACTATGGTATTGAACC+TGG 0.496024 5:-33443287 None:intergenic
ACTGAAGTCATCATCTGAAT+CGG 0.496214 5:-33444037 None:intergenic
CATTGTTCCTTTCTGTCGGA+AGG 0.496574 5:+33442419 MsG0580026251.01.T01:five_prime_UTR
TTTGGCTGGAGTAGTTAATC+CGG 0.496798 5:+33445815 MsG0580026251.01.T01:CDS
GAAATTACAGACCAGGAACC+AGG 0.499193 5:-33444743 None:intergenic
GTCTGCCCTTACAAACCAAT+AGG 0.500993 5:+33445001 MsG0580026251.01.T01:CDS
AGAGCAAGGGTCACAAAAGA+AGG 0.502944 5:+33443073 MsG0580026251.01.T01:CDS
ATTGGTGATGCCAATGGAGA+AGG 0.509060 5:+33445291 MsG0580026251.01.T01:CDS
AGGTGATTCTTGTGCTGGCA+TGG 0.510208 5:+33442806 MsG0580026251.01.T01:five_prime_UTR
GTTCCCTCCTTCCGACAGAA+AGG 0.510545 5:-33442426 None:intergenic
AGTCAAACCATGCATCCTCT+TGG 0.515815 5:-33443993 None:intergenic
TTGATTTATTTGTGAGTCCA+AGG 0.519202 5:+33445026 MsG0580026251.01.T01:CDS
AAACAGCACAACACTTGCTC+AGG 0.519810 5:-33447259 None:intergenic
TTTACAGGCACAAAAGGAAG+AGG 0.525168 5:+33447231 MsG0580026251.01.T01:intron
AAGGCTCAAGCCTTCTCCAT+TGG 0.526944 5:-33445301 None:intergenic
CCTTAGAAGCAGGCAGAAAG+AGG 0.527422 5:-33442477 None:intergenic
GTGTTGAGGACGCGAAAGCA+CGG 0.533305 5:-33445895 None:intergenic
ATAAAAGGAACCTTAGAAGC+AGG 0.533974 5:-33442487 None:intergenic
AGATTCAGGGTGCAAATATG+AGG 0.535593 5:+33444256 MsG0580026251.01.T01:CDS
AGTGGATGATGAGATGGAAA+AGG 0.536497 5:+33445740 MsG0580026251.01.T01:CDS
TGATGTTGGATTAACTATCC+AGG 0.538342 5:+33446769 MsG0580026251.01.T01:CDS
ACTCAAGAAAAGGCATTCCC+TGG 0.539875 5:+33444725 MsG0580026251.01.T01:CDS
GAGATTAGTGGATGATGAGA+TGG 0.540497 5:+33445734 MsG0580026251.01.T01:intron
AAAATTGACTTTGTTAACCA+TGG 0.541173 5:+33447292 MsG0580026251.01.T01:CDS
TGTTGAGGACGCGAAAGCAC+GGG 0.543844 5:-33445894 None:intergenic
ATGGCGTTGCCGCTGGCGAA+AGG 0.544563 5:-33444179 None:intergenic
AATTATGCAAAGTAACATAC+AGG 0.545958 5:-33447548 None:intergenic
TCACCAATGAACATGCTAGC+AGG 0.549372 5:-33445276 None:intergenic
TTTGGATGTTCACCGACACT+TGG 0.551399 5:-33445082 None:intergenic
AACCACCTTTGTCAAAATCC+AGG 0.552169 5:-33443215 None:intergenic
TGAAACCTCTGATCTCCTAC+AGG 0.552393 5:-33443244 None:intergenic
CTGCGGAGCTTGAACACTGA+AGG 0.553302 5:-33444767 None:intergenic
CAACACCTATTGGTTTGTAA+GGG 0.556147 5:-33445006 None:intergenic
GCACCCTGAATCTACAAAGC+AGG 0.559784 5:-33444246 None:intergenic
GAATCATTGTTCCTTTCTGT+CGG 0.560792 5:+33442415 MsG0580026251.01.T01:five_prime_UTR
GTTCCTTTCTGTCGGAAGGA+GGG 0.561800 5:+33442423 MsG0580026251.01.T01:five_prime_UTR
CAAGTATTCCATTCTTTACA+CGG 0.563804 5:-33446748 None:intergenic
ACAACTAGGGGAACAATAGA+GGG 0.565341 5:+33442383 MsG0580026251.01.T01:five_prime_UTR
GTTGTGGTTCAAAACCAAAT+GGG 0.565547 5:+33443049 MsG0580026251.01.T01:CDS
AAAATGTTGGACTTAAGAGA+AGG 0.568369 5:-33447491 None:intergenic
TGTTCCTTTCTGTCGGAAGG+AGG 0.568399 5:+33442422 MsG0580026251.01.T01:five_prime_UTR
GATCAATGGGGAAAATGGAA+AGG 0.573677 5:+33447369 MsG0580026251.01.T01:three_prime_UTR
TCTTCAAGAGCCATAATGGT+AGG 0.575430 5:-33447322 None:intergenic
TAAGGGCAGACATCTGGAGC+AGG 0.575624 5:-33444989 None:intergenic
GGTATTTGGGACATTTCCAA+TGG 0.577536 5:-33444198 None:intergenic
GGAACTTGAATCCCTGCTCT+CGG 0.580440 5:-33444695 None:intergenic
GAAGTTAGCTTCTACCACAA+TGG 0.581341 5:+33443023 MsG0580026251.01.T01:CDS
TACCTCAAGATAGATAAGAA+TGG 0.583166 5:+33444293 MsG0580026251.01.T01:CDS
GAACAATAGAGGGAGAGAAG+AGG 0.584204 5:+33442393 MsG0580026251.01.T01:five_prime_UTR
GAGTATACCAAGAGGATGCA+TGG 0.588884 5:+33443986 MsG0580026251.01.T01:CDS
TTGACTATGGTATTGAACCT+GGG 0.589577 5:-33443286 None:intergenic
TTTATGTAGAGATAAGCAAA+AGG 0.589636 5:+33444964 MsG0580026251.01.T01:intron
ACCTTAAAGAATTGGTGTTG+AGG 0.589868 5:-33445909 None:intergenic
TAGAAGCAGGCAGAAAGAGG+TGG 0.596206 5:-33442474 None:intergenic
AAAACCAAATGGGAAGAGCA+AGG 0.596794 5:+33443059 MsG0580026251.01.T01:CDS
AACATGCTAGCAGGATATGT+AGG 0.599426 5:-33445267 None:intergenic
TTTAGCTATATATCGAGGAA+GGG 0.604329 5:+33446707 MsG0580026251.01.T01:CDS
AAACCAAATGGGAAGAGCAA+GGG 0.607442 5:+33443060 MsG0580026251.01.T01:CDS
GGAAAATGGAAAGGAAAGGA+AGG 0.607610 5:+33447378 MsG0580026251.01.T01:three_prime_UTR
ATGGGGAAAATGGAAAGGAA+AGG 0.612063 5:+33447374 MsG0580026251.01.T01:three_prime_UTR
CATATTGAACTTCCAAGTGT+CGG 0.612685 5:+33445070 MsG0580026251.01.T01:CDS
TGTCAAGTTTCATCTTACCC+AGG 0.615127 5:+33443269 MsG0580026251.01.T01:CDS
AGCTAAAACGGTGTATGTCG+AGG 0.615162 5:-33446691 None:intergenic
ACAACTTAAAATATAGTACA+AGG 0.619074 5:-33445320 None:intergenic
GGCTGCCTGTAGGAGATCAG+AGG 0.619461 5:+33443239 MsG0580026251.01.T01:CDS
AAAGGTTAAAGGGTATGCAA+AGG 0.623130 5:+33445758 MsG0580026251.01.T01:CDS
TCTACCACAATGGGAAGTTG+TGG 0.627755 5:+33443033 MsG0580026251.01.T01:CDS
CATAGTCAAATAGATACCAA+TGG 0.629508 5:+33443300 MsG0580026251.01.T01:CDS
ATGTTCATTGGTGATGCCAA+TGG 0.630081 5:+33445285 MsG0580026251.01.T01:CDS
TGAAGGCGAAATTACAGACC+AGG 0.634925 5:-33444750 None:intergenic
AAACTTATACATGCTTACAA+TGG 0.638264 5:+33445867 MsG0580026251.01.T01:CDS
ATATTTACAATGAGAAGTGA+AGG 0.641644 5:-33445109 None:intergenic
AAGGTGGTTCGGCTGCCTGT+AGG 0.648103 5:+33443229 MsG0580026251.01.T01:CDS
ACTTTCATACTGGAGTAACT+GGG 0.653433 5:-33444219 None:intergenic
TAATGGTAGGAATTTGACCA+TGG 0.659554 5:-33447309 None:intergenic
TGAACCACAACTTCCCATTG+TGG 0.662536 5:-33443037 None:intergenic
AGCAATGCAGGAAACCGCGT+GGG 0.670211 5:+33443165 MsG0580026251.01.T01:CDS
TTGATCTTATCCTGAAAACA+CGG 0.674237 5:-33445369 None:intergenic
AAATTACAGACCAGGAACCA+GGG 0.679337 5:-33444742 None:intergenic
AGGCAACTCTGGAAGCGCAG+AGG 0.680202 5:-33443130 None:intergenic
CATAAATCTGGAAAGCGCAG+AGG 0.689757 5:+33443099 MsG0580026251.01.T01:CDS
TAGCAATGCAGGAAACCGCG+TGG 0.700351 5:+33443164 MsG0580026251.01.T01:CDS
TTAATCTGAGTTCTGCAGAG+AGG 0.720842 5:+33445844 MsG0580026251.01.T01:CDS
GGTGGAAACATATATAAACG+AGG 0.753304 5:-33442456 None:intergenic
AGTGAGTTAGTTGATCAATG+GGG 0.755617 5:+33447357 MsG0580026251.01.T01:three_prime_UTR
TGAGATTAAAATCTCCCACG+CGG 0.794497 5:-33443179 None:intergenic
GACTTCAGTAGTGTTCATGG+AGG 0.803341 5:+33444051 MsG0580026251.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAGATATAAAAAAATGT+TGG - Chr5:33447507-33447526 None:intergenic 10.0%
!! ATTTGTTTAATAAAAAGTAA+TGG - Chr5:33447062-33447081 None:intergenic 10.0%
!! TAATAATTTAAGAAAATAGA+AGG - Chr5:33445531-33445550 None:intergenic 10.0%
!! TTTATTTATATATTCCTTTA+TGG + Chr5:33444140-33444159 MsG0580026251.01.T01:intron 10.0%
!!! ATTAATGTATTTTAAATACA+GGG + Chr5:33446647-33446666 MsG0580026251.01.T01:intron 10.0%
!!! TATTAATGTATTTTAAATAC+AGG + Chr5:33446646-33446665 MsG0580026251.01.T01:intron 10.0%
!! AAAAAAATTAATGAGGATTT+GGG - Chr5:33442638-33442657 None:intergenic 15.0%
!! TAAAAAAATTAATGAGGATT+TGG - Chr5:33442639-33442658 None:intergenic 15.0%
!! TTGATTACATAATTTAATCA+CGG + Chr5:33445227-33445246 MsG0580026251.01.T01:intron 15.0%
!!! AAACTCATTTTAAATTATGT+AGG - Chr5:33446477-33446496 None:intergenic 15.0%
!!! ATTTTTCAACATTTTCAAAT+AGG - Chr5:33445208-33445227 None:intergenic 15.0%
!!! CATATATAAATACCAATTTT+TGG - Chr5:33444937-33444956 None:intergenic 15.0%
!!! GTTATTTTTGTATTCAATTT+TGG + Chr5:33446151-33446170 MsG0580026251.01.T01:intron 15.0%
!! AAAAAAACATACAACAACTA+GGG + Chr5:33442370-33442389 MsG0580026251.01.T01:five_prime_UTR 20.0%
!! AAAACTAAAAATAACACCAA+AGG - Chr5:33443339-33443358 None:intergenic 20.0%
!! AAAAGAGATGATATGATAAA+AGG - Chr5:33442505-33442524 None:intergenic 20.0%
!! AAAATGTGTGATTTCATTAT+TGG + Chr5:33443889-33443908 MsG0580026251.01.T01:intron 20.0%
!! AATTGAATCTAACTTTATGT+TGG - Chr5:33445508-33445527 None:intergenic 20.0%
!! ACAACTTAAAATATAGTACA+AGG - Chr5:33445323-33445342 None:intergenic 20.0%
!! ATACAAATTTATGTCTTGAT+CGG + Chr5:33445934-33445953 MsG0580026251.01.T01:intron 20.0%
!! CAACTATTATAAGTTTATAG+TGG - Chr5:33446502-33446521 None:intergenic 20.0%
!! TAAAAAAACATACAACAACT+AGG + Chr5:33442369-33442388 MsG0580026251.01.T01:five_prime_UTR 20.0%
!! TAATATTACACAACACAATT+TGG - Chr5:33447580-33447599 None:intergenic 20.0%
!! TATATCTTAATATGTGATGA+TGG + Chr5:33447516-33447535 MsG0580026251.01.T01:three_prime_UTR 20.0%
!! TGATGTAACTCTTAATAATT+CGG - Chr5:33444630-33444649 None:intergenic 20.0%
!! TTCAATCAAGTAAATATTGA+TGG - Chr5:33445412-33445431 None:intergenic 20.0%
!! TTGTATATACCTTAAAGAAT+TGG - Chr5:33445920-33445939 None:intergenic 20.0%
!! TTTAGAAGTAGTTATCATTA+AGG - Chr5:33446055-33446074 None:intergenic 20.0%
!!! ATGATATTGTAACTTTAAGA+AGG - Chr5:33445679-33445698 None:intergenic 20.0%
!!! GATTTTTTAATTCTCTTTGA+AGG + Chr5:33442786-33442805 MsG0580026251.01.T01:five_prime_UTR 20.0%
!!! TATGAAAATTTGATTTTGCA+AGG + Chr5:33442918-33442937 MsG0580026251.01.T01:five_prime_UTR 20.0%
!!! TATTCAATTCAGTTTTGTTA+TGG + Chr5:33445161-33445180 MsG0580026251.01.T01:intron 20.0%
!!! TCCTATATTTATGTTTTTAC+AGG + Chr5:33447216-33447235 MsG0580026251.01.T01:intron 20.0%
!!! TTTTATGAAAACCAAAATGT+TGG + Chr5:33442987-33443006 MsG0580026251.01.T01:exon 20.0%
! AAAAAACATACAACAACTAG+GGG + Chr5:33442371-33442390 MsG0580026251.01.T01:five_prime_UTR 25.0%
! AAAATACAAAGTTGAAACGT+GGG - Chr5:33443525-33443544 None:intergenic 25.0%
! AAACAATCTTCCAATAATCA+TGG - Chr5:33447641-33447660 None:intergenic 25.0%
! AAACTTATACATGCTTACAA+TGG + Chr5:33445867-33445886 MsG0580026251.01.T01:CDS 25.0%
! AAATTAAAGTCGCATAGTTA+TGG + Chr5:33446127-33446146 MsG0580026251.01.T01:intron 25.0%
! AATAGCATATGAACTTATAG+CGG - Chr5:33447021-33447040 None:intergenic 25.0%
! AATTATGCAAAGTAACATAC+AGG - Chr5:33447551-33447570 None:intergenic 25.0%
! ACAAATAAATCAACACCTAT+TGG - Chr5:33445019-33445038 None:intergenic 25.0%
! ACTTCTCATTGTAAATATAC+AGG + Chr5:33445114-33445133 MsG0580026251.01.T01:CDS 25.0%
! AGTAAGTTATGTTAACTCTA+AGG - Chr5:33443929-33443948 None:intergenic 25.0%
! ATATTTACAATGAGAAGTGA+AGG - Chr5:33445112-33445131 None:intergenic 25.0%
! GCCTGTAAAAACATAAATAT+AGG - Chr5:33447220-33447239 None:intergenic 25.0%
! GTAAGTTATGTTAACTCTAA+GGG - Chr5:33443928-33443947 None:intergenic 25.0%
! GTTCATTTACTTCCAAAAAT+TGG + Chr5:33444922-33444941 MsG0580026251.01.T01:intron 25.0%
! TAATAATGTGTGAAATCACA+TGG - Chr5:33446631-33446650 None:intergenic 25.0%
! TAATGCAAACAATACAATGT+CGG - Chr5:33443806-33443825 None:intergenic 25.0%
! TAGTCAAAGAAACAATTGTT+TGG - Chr5:33443618-33443637 None:intergenic 25.0%
! TGAATCTGATTATTCAGAAA+GGG + Chr5:33446212-33446231 MsG0580026251.01.T01:intron 25.0%
! TGTTAAAGCCTAAAAACATT+AGG + Chr5:33444580-33444599 MsG0580026251.01.T01:intron 25.0%
! TTATAGATGTGATAACACTA+GGG + Chr5:33446174-33446193 MsG0580026251.01.T01:intron 25.0%
! TTATCACAAAAAAAACATCG+AGG - Chr5:33442843-33442862 None:intergenic 25.0%
! TTGAATCTGATTATTCAGAA+AGG + Chr5:33446211-33446230 MsG0580026251.01.T01:intron 25.0%
! TTTATGTAGAGATAAGCAAA+AGG + Chr5:33444964-33444983 MsG0580026251.01.T01:intron 25.0%
!! AAAATTGACTTTGTTAACCA+TGG + Chr5:33447292-33447311 MsG0580026251.01.T01:CDS 25.0%
!! AATTGTATGATTTTCCTTTC+AGG + Chr5:33444422-33444441 MsG0580026251.01.T01:intron 25.0%
!! ATGAACTTCCTAATGTTTTT+AGG - Chr5:33444591-33444610 None:intergenic 25.0%
!! TAGAGAAAGACTCAAAATTT+TGG + Chr5:33445797-33445816 MsG0580026251.01.T01:CDS 25.0%
!! TTGTTAATTCAATTCTAGAG+AGG + Chr5:33446869-33446888 MsG0580026251.01.T01:intron 25.0%
!! TTTTCATTGAAATTTCGTCA+AGG + Chr5:33444455-33444474 MsG0580026251.01.T01:intron 25.0%
!!! AATTTTGAGTCTTTCTCTAA+AGG - Chr5:33445796-33445815 None:intergenic 25.0%
!!! ATGATTTTGATTATGAGAGA+GGG + Chr5:33447601-33447620 MsG0580026251.01.T01:three_prime_UTR 25.0%
!!! ATTTTGAGTCTTTCTCTAAA+GGG - Chr5:33445795-33445814 None:intergenic 25.0%
!!! TATGATTTTGATTATGAGAG+AGG + Chr5:33447600-33447619 MsG0580026251.01.T01:three_prime_UTR 25.0%
!!! TCACTTTTATACAATTTGCA+TGG + Chr5:33443687-33443706 MsG0580026251.01.T01:intron 25.0%
!!! TTGATAAAACTTGTTAATCC+CGG - Chr5:33447099-33447118 None:intergenic 25.0%
AAAAAAATGCAAGACCTGAA+AGG - Chr5:33444439-33444458 None:intergenic 30.0%
AAAAGAAGGAGTCATAAATC+TGG + Chr5:33443087-33443106 MsG0580026251.01.T01:CDS 30.0%
AAAATGTTGGACTTAAGAGA+AGG - Chr5:33447494-33447513 None:intergenic 30.0%
AAGAATGGAATACTTGATGT+TGG + Chr5:33446755-33446774 MsG0580026251.01.T01:CDS 30.0%
AATGGTTCAAATCAACTTTG+AGG + Chr5:33446257-33446276 MsG0580026251.01.T01:intron 30.0%
ACTTCTAACTAACGATTTCA+AGG - Chr5:33446806-33446825 None:intergenic 30.0%
ATGAGATGGAAAAGGTTAAA+GGG + Chr5:33445748-33445767 MsG0580026251.01.T01:CDS 30.0%
CAAAATACAAAGTTGAAACG+TGG - Chr5:33443526-33443545 None:intergenic 30.0%
CAAGTATTCCATTCTTTACA+CGG - Chr5:33446751-33446770 None:intergenic 30.0%
CATAGTCAAATAGATACCAA+TGG + Chr5:33443300-33443319 MsG0580026251.01.T01:CDS 30.0%
CATTGGTATCTATTTGACTA+TGG - Chr5:33443302-33443321 None:intergenic 30.0%
CCATCATAACAATATCATCA+AGG - Chr5:33443366-33443385 None:intergenic 30.0%
CTTAGAATCTGATCTTTGTA+TGG + Chr5:33446354-33446373 MsG0580026251.01.T01:intron 30.0%
GAATCTGATTATTCAGAAAG+GGG + Chr5:33446213-33446232 MsG0580026251.01.T01:intron 30.0%
GAATGACATACATAAATCGT+TGG - Chr5:33444482-33444501 None:intergenic 30.0%
GTTATAGATGTGATAACACT+AGG + Chr5:33446173-33446192 MsG0580026251.01.T01:intron 30.0%
TACCTCAAGATAGATAAGAA+TGG + Chr5:33444293-33444312 MsG0580026251.01.T01:CDS 30.0%
TCAATAATGAATCGTTGAAC+AGG + Chr5:33444647-33444666 MsG0580026251.01.T01:intron 30.0%
TCCTCGATATATAGCTAAAA+CGG - Chr5:33446706-33446725 None:intergenic 30.0%
TGTGTGATTTCATTATTGGA+AGG + Chr5:33443893-33443912 MsG0580026251.01.T01:intron 30.0%
TTGATCTTATCCTGAAAACA+CGG - Chr5:33445372-33445391 None:intergenic 30.0%
TTGATTTATTTGTGAGTCCA+AGG + Chr5:33445026-33445045 MsG0580026251.01.T01:CDS 30.0%
TTTAGCTATATATCGAGGAA+GGG + Chr5:33446707-33446726 MsG0580026251.01.T01:CDS 30.0%
! CCTTGATGATATTGTTATGA+TGG + Chr5:33443363-33443382 MsG0580026251.01.T01:intron 30.0%
! TTATTGACTATGTTGAGCAT+TGG + Chr5:33444095-33444114 MsG0580026251.01.T01:intron 30.0%
! TTCATCGGTTGAAAATTCTA+GGG + Chr5:33445596-33445615 MsG0580026251.01.T01:intron 30.0%
!! AACTATTTGATAACTTGCTC+AGG - Chr5:33446580-33446599 None:intergenic 30.0%
!! TATGTTTTTACAGGCACAAA+AGG + Chr5:33447225-33447244 MsG0580026251.01.T01:intron 30.0%
!! TTTTAGCTATATATCGAGGA+AGG + Chr5:33446706-33446725 MsG0580026251.01.T01:CDS 30.0%
AAATTAAACCTTGCATGTCC+GGG + Chr5:33447078-33447097 MsG0580026251.01.T01:intron 35.0%
AACAATACAATGTCGGAATG+TGG - Chr5:33443799-33443818 None:intergenic 35.0%
AACAATCTGTTCGACCATAA+AGG - Chr5:33444157-33444176 None:intergenic 35.0%
AACTTTCATACTGGAGTAAC+TGG - Chr5:33444223-33444242 None:intergenic 35.0%
ACAGTGAGTTAGTTGATCAA+TGG + Chr5:33447355-33447374 MsG0580026251.01.T01:three_prime_UTR 35.0%
ACGACTGTGTCAATGTTATT+CGG - Chr5:33444899-33444918 None:intergenic 35.0%
ACTCCTTCTATGTGAATTGT+CGG - Chr5:33444844-33444863 None:intergenic 35.0%
ACTGAAGTCATCATCTGAAT+CGG - Chr5:33444040-33444059 None:intergenic 35.0%
ACTTTCATACTGGAGTAACT+GGG - Chr5:33444222-33444241 None:intergenic 35.0%
AGGAGCAAAAAAGTTACCAT+TGG - Chr5:33443319-33443338 None:intergenic 35.0%
AGGTCTATCTCAAAGTAGTT+AGG - Chr5:33446674-33446693 None:intergenic 35.0%
AGTGAGTTAGTTGATCAATG+GGG + Chr5:33447357-33447376 MsG0580026251.01.T01:three_prime_UTR 35.0%
AGTTGTGGTTCAAAACCAAA+TGG + Chr5:33443048-33443067 MsG0580026251.01.T01:CDS 35.0%
ATAAAAGGAACCTTAGAAGC+AGG - Chr5:33442490-33442509 None:intergenic 35.0%
ATCGATTAGACAATCCAGAT+CGG - Chr5:33443763-33443782 None:intergenic 35.0%
ATGAAAACCAAAATGTTGGC+TGG + Chr5:33442991-33443010 MsG0580026251.01.T01:CDS 35.0%
ATTTACCAAAGTTGGAACGT+GGG + Chr5:33443551-33443570 MsG0580026251.01.T01:intron 35.0%
ATTTGCATGGAAATAGCAAG+AGG + Chr5:33443700-33443719 MsG0580026251.01.T01:intron 35.0%
CAAATTAAACCTTGCATGTC+CGG + Chr5:33447077-33447096 MsG0580026251.01.T01:intron 35.0%
CAGTGAGTTAGTTGATCAAT+GGG + Chr5:33447356-33447375 MsG0580026251.01.T01:three_prime_UTR 35.0%
CATATTGAACTTCCAAGTGT+CGG + Chr5:33445070-33445089 MsG0580026251.01.T01:CDS 35.0%
CTCCATTCTTATCTATCTTG+AGG - Chr5:33444298-33444317 None:intergenic 35.0%
CTTGTTTATCAAAGAAGCCA+TGG - Chr5:33443663-33443682 None:intergenic 35.0%
GAATCATTGTTCCTTTCTGT+CGG + Chr5:33442415-33442434 MsG0580026251.01.T01:five_prime_UTR 35.0%
GACTTTAGACTAAAGTCGTT+AGG + Chr5:33446913-33446932 MsG0580026251.01.T01:intron 35.0%
GATAATGACAATGAGCTTGT+TGG + Chr5:33443422-33443441 MsG0580026251.01.T01:intron 35.0%
GATGAGATGGAAAAGGTTAA+AGG + Chr5:33445747-33445766 MsG0580026251.01.T01:CDS 35.0%
GCAATGTGATTTATCTTCCT+TGG - Chr5:33445046-33445065 None:intergenic 35.0%
GCACTTTCAATATGAAGAGT+CGG - Chr5:33445465-33445484 None:intergenic 35.0%
GGTGGAAACATATATAAACG+AGG - Chr5:33442459-33442478 None:intergenic 35.0%
GTTGTCAGAGAATTTCGAAA+AGG + Chr5:33445338-33445357 MsG0580026251.01.T01:CDS 35.0%
GTTGTGGTTCAAAACCAAAT+GGG + Chr5:33443049-33443068 MsG0580026251.01.T01:CDS 35.0%
TAATGGTAGGAATTTGACCA+TGG - Chr5:33447312-33447331 None:intergenic 35.0%
TAGTTGATCAATGGGGAAAA+TGG + Chr5:33447364-33447383 MsG0580026251.01.T01:three_prime_UTR 35.0%
TATTAGCCAATGTGAGACTA+GGG + Chr5:33447128-33447147 MsG0580026251.01.T01:intron 35.0%
TCCAGTTTCAACTCAAGAAA+AGG + Chr5:33444715-33444734 MsG0580026251.01.T01:CDS 35.0%
TCCTCAACACCAATTCTTTA+AGG + Chr5:33445908-33445927 MsG0580026251.01.T01:CDS 35.0%
TCTAATGAGCATGTCGTATA+AGG - Chr5:33445643-33445662 None:intergenic 35.0%
TGATGTTGGATTAACTATCC+AGG + Chr5:33446769-33446788 MsG0580026251.01.T01:CDS 35.0%
TGGTCAAATTCCTACCATTA+TGG + Chr5:33447312-33447331 MsG0580026251.01.T01:CDS 35.0%
TTAGTAGTGGCCATGATTAT+TGG + Chr5:33447628-33447647 MsG0580026251.01.T01:three_prime_UTR 35.0%
TTCAAGGATCAAACTATACC+TGG - Chr5:33446790-33446809 None:intergenic 35.0%
TTGACCTGATTTACCAAAGT+TGG + Chr5:33443543-33443562 MsG0580026251.01.T01:intron 35.0%
TTTGTCTTCAAGAGCCATAA+TGG - Chr5:33447329-33447348 None:intergenic 35.0%
! AAAGGTTAAAGGGTATGCAA+AGG + Chr5:33445758-33445777 MsG0580026251.01.T01:CDS 35.0%
! AAGTTAGCTTCTACCACAAT+GGG + Chr5:33443024-33443043 MsG0580026251.01.T01:CDS 35.0%
! AGTTGATTCAAACCAGCTTA+TGG - Chr5:33446396-33446415 None:intergenic 35.0%
! ATGAGAAGTGAAGGTACATT+TGG - Chr5:33445103-33445122 None:intergenic 35.0%
! CTTCATCGGTTGAAAATTCT+AGG + Chr5:33445595-33445614 MsG0580026251.01.T01:intron 35.0%
! GATTTTGCAAGGTCTTTTTG+AGG + Chr5:33442929-33442948 MsG0580026251.01.T01:five_prime_UTR 35.0%
! TACTAATCCAGCCAACATTT+TGG - Chr5:33443001-33443020 None:intergenic 35.0%
! TTGACTATGGTATTGAACCT+GGG - Chr5:33443289-33443308 None:intergenic 35.0%
! TTTGACTATGGTATTGAACC+TGG - Chr5:33443290-33443309 None:intergenic 35.0%
!! ACAATGAGCTTGTTGGATTT+CGG + Chr5:33443429-33443448 MsG0580026251.01.T01:intron 35.0%
!! ACCTTAAAGAATTGGTGTTG+AGG - Chr5:33445912-33445931 None:intergenic 35.0%
!! ATTGGTTTGACAGAGATTAG+TGG + Chr5:33445722-33445741 MsG0580026251.01.T01:intron 35.0%
!! CAACACCTATTGGTTTGTAA+GGG - Chr5:33445009-33445028 None:intergenic 35.0%
!! GAAAGACTCAAAATTTTGGC+TGG + Chr5:33445801-33445820 MsG0580026251.01.T01:CDS 35.0%
!! GTGTTTTCAGGATAAGATCA+AGG + Chr5:33445371-33445390 MsG0580026251.01.T01:CDS 35.0%
!! TCAACACCTATTGGTTTGTA+AGG - Chr5:33445010-33445029 None:intergenic 35.0%
!!! ACCGTTTTAGCTATATATCG+AGG + Chr5:33446702-33446721 MsG0580026251.01.T01:CDS 35.0%
!!! GCACTATTCTGTGGTTTTAA+TGG + Chr5:33446239-33446258 MsG0580026251.01.T01:intron 35.0%
!!! GTGATTCGTTGATTTTACAC+TGG + Chr5:33446094-33446113 MsG0580026251.01.T01:intron 35.0%
!!! TGGTAACTTTTTTGCTCCTT+TGG + Chr5:33443320-33443339 MsG0580026251.01.T01:intron 35.0%
AAAACCAAATGGGAAGAGCA+AGG + Chr5:33443059-33443078 MsG0580026251.01.T01:CDS 40.0%
AAACCAAATGGGAAGAGCAA+GGG + Chr5:33443060-33443079 MsG0580026251.01.T01:CDS 40.0%
AAACTCGCTTTACCATAAGC+TGG + Chr5:33446381-33446400 MsG0580026251.01.T01:intron 40.0%
AAATTACAGACCAGGAACCA+GGG - Chr5:33444745-33444764 None:intergenic 40.0%
AACAACTAGGGGAACAATAG+AGG + Chr5:33442382-33442401 MsG0580026251.01.T01:five_prime_UTR 40.0%
AACATGCTAGCAGGATATGT+AGG - Chr5:33445270-33445289 None:intergenic 40.0%
AACCACCTTTGTCAAAATCC+AGG - Chr5:33443218-33443237 None:intergenic 40.0%
AAGATCGGACAGTTGACATT+CGG - Chr5:33443840-33443859 None:intergenic 40.0%
AATGTCGGAATGTGGACATT+TGG - Chr5:33443791-33443810 None:intergenic 40.0%
ACAACTAGGGGAACAATAGA+GGG + Chr5:33442383-33442402 MsG0580026251.01.T01:five_prime_UTR 40.0%
ACCTGAAAAATGTTTCGCTG+CGG - Chr5:33444787-33444806 None:intergenic 40.0%
ACTGGAGTAACTGGGTATTT+GGG - Chr5:33444214-33444233 None:intergenic 40.0%
AGATTCAGGGTGCAAATATG+AGG + Chr5:33444256-33444275 MsG0580026251.01.T01:CDS 40.0%
AGCAGGATGAACTTTCATAC+TGG - Chr5:33444232-33444251 None:intergenic 40.0%
AGTGGATGATGAGATGGAAA+AGG + Chr5:33445740-33445759 MsG0580026251.01.T01:CDS 40.0%
ATATGCATGCATGCATGAAG+AGG - Chr5:33442597-33442616 None:intergenic 40.0%
ATGAACCGTCTGATCAAGAT+CGG - Chr5:33443855-33443874 None:intergenic 40.0%
ATGCATGCATGCATATGCAT+GGG + Chr5:33442601-33442620 MsG0580026251.01.T01:intron 40.0%
ATGGGGAAAATGGAAAGGAA+AGG + Chr5:33447374-33447393 MsG0580026251.01.T01:three_prime_UTR 40.0%
CATCCTGCTTTGTAGATTCA+GGG + Chr5:33444243-33444262 MsG0580026251.01.T01:CDS 40.0%
CGTTCCAACTTTGGTAAATC+AGG - Chr5:33443550-33443569 None:intergenic 40.0%
CTATTAGCCAATGTGAGACT+AGG + Chr5:33447127-33447146 MsG0580026251.01.T01:intron 40.0%
GAAAAACCCTAGTCTCACAT+TGG - Chr5:33447137-33447156 None:intergenic 40.0%
GAACTCAGATTAAGGTCTTC+CGG - Chr5:33445837-33445856 None:intergenic 40.0%
GATCAATGGGGAAAATGGAA+AGG + Chr5:33447369-33447388 MsG0580026251.01.T01:three_prime_UTR 40.0%
GATGACTTCAGTAGTGTTCA+TGG + Chr5:33444048-33444067 MsG0580026251.01.T01:CDS 40.0%
GATTTACCAAAGTTGGAACG+TGG + Chr5:33443550-33443569 MsG0580026251.01.T01:intron 40.0%
GGAAAATGGAAAGGAAAGGA+AGG + Chr5:33447378-33447397 MsG0580026251.01.T01:three_prime_UTR 40.0%
GGAAAGGAAGGAAAGATTTC+TGG + Chr5:33447390-33447409 MsG0580026251.01.T01:three_prime_UTR 40.0%
TACTGGAGTAACTGGGTATT+TGG - Chr5:33444215-33444234 None:intergenic 40.0%
TAGAAGGAGTTTCTGTTGTC+TGG + Chr5:33444854-33444873 MsG0580026251.01.T01:intron 40.0%
TATCCTGCTAGCATGTTCAT+TGG + Chr5:33445273-33445292 MsG0580026251.01.T01:CDS 40.0%
TCATCCTGCTTTGTAGATTC+AGG + Chr5:33444242-33444261 MsG0580026251.01.T01:CDS 40.0%
TCGATTAGACAATCCAGATC+GGG - Chr5:33443762-33443781 None:intergenic 40.0%
TCTCTGCAGAACTCAGATTA+AGG - Chr5:33445845-33445864 None:intergenic 40.0%
TCTTCAAGAGCCATAATGGT+AGG - Chr5:33447325-33447344 None:intergenic 40.0%
TGAGATTAAAATCTCCCACG+CGG - Chr5:33443182-33443201 None:intergenic 40.0%
TGATAACACTAGGGTTCTGT+TGG + Chr5:33446183-33446202 MsG0580026251.01.T01:intron 40.0%
TGTCAAGTTTCATCTTACCC+AGG + Chr5:33443269-33443288 MsG0580026251.01.T01:CDS 40.0%
TTAATCTGAGTTCTGCAGAG+AGG + Chr5:33445844-33445863 MsG0580026251.01.T01:CDS 40.0%
TTTACAGGCACAAAAGGAAG+AGG + Chr5:33447231-33447250 MsG0580026251.01.T01:intron 40.0%
TTTGAAGGTGATTCTTGTGC+TGG + Chr5:33442801-33442820 MsG0580026251.01.T01:five_prime_UTR 40.0%
TTTGGCTGGAGTAGTTAATC+CGG + Chr5:33445815-33445834 MsG0580026251.01.T01:CDS 40.0%
! AGCACTTGTGTACATTTTGC+AGG + Chr5:33443964-33443983 MsG0580026251.01.T01:intron 40.0%
! ATTTTCAACCGATGAAGCAC+TGG - Chr5:33445592-33445611 None:intergenic 40.0%
! GAAGTTAGCTTCTACCACAA+TGG + Chr5:33443023-33443042 MsG0580026251.01.T01:CDS 40.0%
! GAGATTAGTGGATGATGAGA+TGG + Chr5:33445734-33445753 MsG0580026251.01.T01:intron 40.0%
! GCATTGCTAACCCTTTTCAA+AGG - Chr5:33443153-33443172 None:intergenic 40.0%
! GGTATTTGGGACATTTCCAA+TGG - Chr5:33444201-33444220 None:intergenic 40.0%
! TCCAGAGTTGCCTTTGAAAA+GGG + Chr5:33443140-33443159 MsG0580026251.01.T01:CDS 40.0%
! TCTCAGTGAATTTGTTCACC+TGG + Chr5:33443197-33443216 MsG0580026251.01.T01:CDS 40.0%
! TTCCAGAGTTGCCTTTGAAA+AGG + Chr5:33443139-33443158 MsG0580026251.01.T01:CDS 40.0%
! TTGAAAAGGGTTAGCAATGC+AGG + Chr5:33443153-33443172 MsG0580026251.01.T01:CDS 40.0%
!! AGCTTGTTGGATTTCGGATT+TGG + Chr5:33443435-33443454 MsG0580026251.01.T01:intron 40.0%
!! ATGTTCATTGGTGATGCCAA+TGG + Chr5:33445285-33445304 MsG0580026251.01.T01:CDS 40.0%
!! GGATTTTGACAAAGGTGGTT+CGG + Chr5:33443218-33443237 MsG0580026251.01.T01:CDS 40.0%
!! GTTCACCTGGATTTTGACAA+AGG + Chr5:33443210-33443229 MsG0580026251.01.T01:CDS 40.0%
!! TTTGCAAGGTCTTTTTGAGG+AGG + Chr5:33442932-33442951 MsG0580026251.01.T01:five_prime_UTR 40.0%
!! TTTTGCAGGAGTATACCAAG+AGG + Chr5:33443978-33443997 MsG0580026251.01.T01:intron 40.0%
!!! GCCTTTTCTTGAGTTGAAAC+TGG - Chr5:33444719-33444738 None:intergenic 40.0%
AAACAGCACAACACTTGCTC+AGG - Chr5:33447262-33447281 None:intergenic 45.0%
AAGAAGCCATGGCAACTCTA+CGG - Chr5:33443652-33443671 None:intergenic 45.0%
AAGGGGTTTGCACTATTCTG+TGG + Chr5:33446230-33446249 MsG0580026251.01.T01:intron 45.0%
ACTGTCCGATCTTGATCAGA+CGG + Chr5:33443847-33443866 MsG0580026251.01.T01:intron 45.0%
AGAGCAAGGGTCACAAAAGA+AGG + Chr5:33443073-33443092 MsG0580026251.01.T01:CDS 45.0%
AGCTAAAACGGTGTATGTCG+AGG - Chr5:33446694-33446713 None:intergenic 45.0%
AGTCAAACCATGCATCCTCT+TGG - Chr5:33443996-33444015 None:intergenic 45.0%
ATGCATATGCATGGGATGTG+TGG + Chr5:33442609-33442628 MsG0580026251.01.T01:intron 45.0%
CAAGAGGATGCATGGTTTGA+CGG + Chr5:33443716-33443735 MsG0580026251.01.T01:intron 45.0%
CATGCATGCATGCATATGCA+TGG + Chr5:33442600-33442619 MsG0580026251.01.T01:intron 45.0%
CATTGTTCCTTTCTGTCGGA+AGG + Chr5:33442419-33442438 MsG0580026251.01.T01:five_prime_UTR 45.0%
CGATTAGACAATCCAGATCG+GGG - Chr5:33443761-33443780 None:intergenic 45.0%
CTGATCTTGATCTGACGACT+AGG - Chr5:33443498-33443517 None:intergenic 45.0%
CTTCGAGACCGTGTAAAGAA+TGG + Chr5:33446740-33446759 MsG0580026251.01.T01:CDS 45.0%
GAAATTACAGACCAGGAACC+AGG - Chr5:33444746-33444765 None:intergenic 45.0%
GAACAATAGAGGGAGAGAAG+AGG + Chr5:33442393-33442412 MsG0580026251.01.T01:five_prime_UTR 45.0%
GACAGTTGACATTCGGACTT+TGG - Chr5:33443833-33443852 None:intergenic 45.0%
GACTTCAGTAGTGTTCATGG+AGG + Chr5:33444051-33444070 MsG0580026251.01.T01:CDS 45.0%
GAGTATACCAAGAGGATGCA+TGG + Chr5:33443986-33444005 MsG0580026251.01.T01:CDS 45.0%
GATAACCCACGTTCCAACTT+TGG - Chr5:33443559-33443578 None:intergenic 45.0%
GGAAATAGCAAGAGGATGCA+TGG + Chr5:33443708-33443727 MsG0580026251.01.T01:intron 45.0%
GTCTGCCCTTACAAACCAAT+AGG + Chr5:33445001-33445020 MsG0580026251.01.T01:CDS 45.0%
TCACCAATGAACATGCTAGC+AGG - Chr5:33445279-33445298 None:intergenic 45.0%
TCTACCACAATGGGAAGTTG+TGG + Chr5:33443033-33443052 MsG0580026251.01.T01:CDS 45.0%
TGAAACCTCTGATCTCCTAC+AGG - Chr5:33443247-33443266 None:intergenic 45.0%
TGAACCACAACTTCCCATTG+TGG - Chr5:33443040-33443059 None:intergenic 45.0%
TGAAGGCGAAATTACAGACC+AGG - Chr5:33444753-33444772 None:intergenic 45.0%
TGAATTTGATCTGATGCGCC+AGG + Chr5:33443579-33443598 MsG0580026251.01.T01:intron 45.0%
TGTTTGCACCAGTGCTTCAT+CGG + Chr5:33445581-33445600 MsG0580026251.01.T01:intron 45.0%
TTCTGTTGTCTGGCACATGT+CGG + Chr5:33444864-33444883 MsG0580026251.01.T01:intron 45.0%
TTCTTTATCGTCCGAGAGCA+GGG + Chr5:33444684-33444703 MsG0580026251.01.T01:CDS 45.0%
TTGTTAATCCCGGACATGCA+AGG - Chr5:33447089-33447108 None:intergenic 45.0%
TTTCTTTATCGTCCGAGAGC+AGG + Chr5:33444683-33444702 MsG0580026251.01.T01:CDS 45.0%
TTTGGATGTTCACCGACACT+TGG - Chr5:33445085-33445104 None:intergenic 45.0%
! ACCCTTTTCAAAGGCAACTC+TGG - Chr5:33443144-33443163 None:intergenic 45.0%
! CATAAATCTGGAAAGCGCAG+AGG + Chr5:33443099-33443118 MsG0580026251.01.T01:CDS 45.0%
! GATTGTTTTCCTTTCGCCAG+CGG + Chr5:33444170-33444189 MsG0580026251.01.T01:intron 45.0%
! GCACCGACAATTCACATAGA+AGG + Chr5:33444838-33444857 MsG0580026251.01.T01:intron 45.0%
! TCCGCAGCGAAACATTTTTC+AGG + Chr5:33444783-33444802 MsG0580026251.01.T01:CDS 45.0%
!! ACTCAAGAAAAGGCATTCCC+TGG + Chr5:33444725-33444744 MsG0580026251.01.T01:CDS 45.0%
!! ATTGGTGATGCCAATGGAGA+AGG + Chr5:33445291-33445310 MsG0580026251.01.T01:CDS 45.0%
!! CACCTGGATTTTGACAAAGG+TGG + Chr5:33443213-33443232 MsG0580026251.01.T01:CDS 45.0%
!! GAGAGAGGGCTTTTTAGTAG+TGG + Chr5:33447615-33447634 MsG0580026251.01.T01:three_prime_UTR 45.0%
!! TGAAGCACTGGTGCAAACAT+TGG - Chr5:33445580-33445599 None:intergenic 45.0%
!! AAAAAATAAAAAAATTAATG+AGG - Chr5:33442645-33442664 None:intergenic 5.0%
!! AAAAATAAAAATTAAAGAAA+AGG - Chr5:33442567-33442586 None:intergenic 5.0%
!! AAAATAAAAATTAAAGAAAA+GGG - Chr5:33442566-33442585 None:intergenic 5.0%
!!! ATTTTAAGAAAAAATTATAT+TGG + Chr5:33445704-33445723 MsG0580026251.01.T01:intron 5.0%
!!! TTTAATTATTTTATTTTTCA+GGG + Chr5:33442764-33442783 MsG0580026251.01.T01:intron 5.0%
!!! TTTTAATTATTTTATTTTTC+AGG + Chr5:33442763-33442782 MsG0580026251.01.T01:intron 5.0%
AAGGCTCAAGCCTTCTCCAT+TGG - Chr5:33445304-33445323 None:intergenic 50.0%
CCTCTTTCTGCCTGCTTCTA+AGG + Chr5:33442477-33442496 MsG0580026251.01.T01:five_prime_UTR 50.0%
CCTTAGAAGCAGGCAGAAAG+AGG - Chr5:33442480-33442499 None:intergenic 50.0%
GCACCCTGAATCTACAAAGC+AGG - Chr5:33444249-33444268 None:intergenic 50.0%
GGAACTTGAATCCCTGCTCT+CGG - Chr5:33444698-33444717 None:intergenic 50.0%
GGTTTGTAAGGGCAGACATC+TGG - Chr5:33444998-33445017 None:intergenic 50.0%
GTTCCTTTCTGTCGGAAGGA+GGG + Chr5:33442423-33442442 MsG0580026251.01.T01:five_prime_UTR 50.0%
TAGAAGCAGGCAGAAAGAGG+TGG - Chr5:33442477-33442496 None:intergenic 50.0%
TGACCCTTGCTCTTCCCATT+TGG - Chr5:33443066-33443085 None:intergenic 50.0%
TGTTCCTTTCTGTCGGAAGG+AGG + Chr5:33442422-33442441 MsG0580026251.01.T01:five_prime_UTR 50.0%
! AGGTGATTCTTGTGCTGGCA+TGG + Chr5:33442806-33442825 MsG0580026251.01.T01:five_prime_UTR 50.0%
! TTTGGTGCAGTCACATGACC+TGG - Chr5:33443600-33443619 None:intergenic 50.0%
!! AAAAGGCATTCCCTGGTTCC+TGG + Chr5:33444732-33444751 MsG0580026251.01.T01:CDS 50.0%
AAGCCATGGCAACTCTACGG+CGG - Chr5:33443649-33443668 None:intergenic 55.0%
AATCCGCCGTAGAGTTGCCA+TGG + Chr5:33443643-33443662 MsG0580026251.01.T01:intron 55.0%
AGCAATGCAGGAAACCGCGT+GGG + Chr5:33443165-33443184 MsG0580026251.01.T01:CDS 55.0%
ATTTCCAATGGCGTTGCCGC+TGG - Chr5:33444189-33444208 None:intergenic 55.0%
CTGCGGAGCTTGAACACTGA+AGG - Chr5:33444770-33444789 None:intergenic 55.0%
GTGTTGAGGACGCGAAAGCA+CGG - Chr5:33445898-33445917 None:intergenic 55.0%
GTTCCCTCCTTCCGACAGAA+AGG - Chr5:33442429-33442448 None:intergenic 55.0%
TAGCAATGCAGGAAACCGCG+TGG + Chr5:33443164-33443183 MsG0580026251.01.T01:CDS 55.0%
! GGAGATCTCGCCGTGTTTTC+AGG + Chr5:33445359-33445378 MsG0580026251.01.T01:CDS 55.0%
! TAAGGGCAGACATCTGGAGC+AGG - Chr5:33444992-33445011 None:intergenic 55.0%
! TGTTGAGGACGCGAAAGCAC+GGG - Chr5:33445897-33445916 None:intergenic 55.0%
CAATCACGCAGTCCCCGATC+TGG + Chr5:33443746-33443765 MsG0580026251.01.T01:intron 60.0%
GGCTGCCTGTAGGAGATCAG+AGG + Chr5:33443239-33443258 MsG0580026251.01.T01:CDS 60.0%
! AAGGTGGTTCGGCTGCCTGT+AGG + Chr5:33443229-33443248 MsG0580026251.01.T01:CDS 60.0%
! AGGCAACTCTGGAAGCGCAG+AGG - Chr5:33443133-33443152 None:intergenic 60.0%
ATGGCGTTGCCGCTGGCGAA+AGG - Chr5:33444182-33444201 None:intergenic 65.0%
TTCGCCAGCGGCAACGCCAT+TGG + Chr5:33444182-33444201 MsG0580026251.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 33442345 33447708 33442345 ID=MsG0580026251.01;Name=MsG0580026251.01
Chr5 mRNA 33442345 33447708 33442345 ID=MsG0580026251.01.T01;Parent=MsG0580026251.01;Name=MsG0580026251.01.T01;_AED=0.30;_eAED=0.30;_QI=360|1|1|1|0.88|0.8|10|357|505
Chr5 exon 33442345 33442498 33442345 ID=MsG0580026251.01.T01:exon:13572;Parent=MsG0580026251.01.T01
Chr5 exon 33442785 33443321 33442785 ID=MsG0580026251.01.T01:exon:13573;Parent=MsG0580026251.01.T01
Chr5 exon 33443986 33444072 33443986 ID=MsG0580026251.01.T01:exon:13574;Parent=MsG0580026251.01.T01
Chr5 exon 33444171 33444410 33444171 ID=MsG0580026251.01.T01:exon:13575;Parent=MsG0580026251.01.T01
Chr5 exon 33444669 33444804 33444669 ID=MsG0580026251.01.T01:exon:13576;Parent=MsG0580026251.01.T01
Chr5 exon 33444973 33445135 33444973 ID=MsG0580026251.01.T01:exon:13577;Parent=MsG0580026251.01.T01
Chr5 exon 33445264 33445392 33445264 ID=MsG0580026251.01.T01:exon:13578;Parent=MsG0580026251.01.T01
Chr5 exon 33445735 33445929 33445735 ID=MsG0580026251.01.T01:exon:13579;Parent=MsG0580026251.01.T01
Chr5 exon 33446668 33446790 33446668 ID=MsG0580026251.01.T01:exon:13580;Parent=MsG0580026251.01.T01
Chr5 exon 33447238 33447708 33447238 ID=MsG0580026251.01.T01:exon:13581;Parent=MsG0580026251.01.T01
Chr5 five_prime_UTR 33442345 33442498 33442345 ID=MsG0580026251.01.T01:five_prime_utr;Parent=MsG0580026251.01.T01
Chr5 five_prime_UTR 33442785 33442990 33442785 ID=MsG0580026251.01.T01:five_prime_utr;Parent=MsG0580026251.01.T01
Chr5 CDS 33442991 33443321 33442991 ID=MsG0580026251.01.T01:cds;Parent=MsG0580026251.01.T01
Chr5 CDS 33443986 33444072 33443986 ID=MsG0580026251.01.T01:cds;Parent=MsG0580026251.01.T01
Chr5 CDS 33444171 33444410 33444171 ID=MsG0580026251.01.T01:cds;Parent=MsG0580026251.01.T01
Chr5 CDS 33444669 33444804 33444669 ID=MsG0580026251.01.T01:cds;Parent=MsG0580026251.01.T01
Chr5 CDS 33444973 33445135 33444973 ID=MsG0580026251.01.T01:cds;Parent=MsG0580026251.01.T01
Chr5 CDS 33445264 33445392 33445264 ID=MsG0580026251.01.T01:cds;Parent=MsG0580026251.01.T01
Chr5 CDS 33445735 33445929 33445735 ID=MsG0580026251.01.T01:cds;Parent=MsG0580026251.01.T01
Chr5 CDS 33446668 33446790 33446668 ID=MsG0580026251.01.T01:cds;Parent=MsG0580026251.01.T01
Chr5 CDS 33447238 33447351 33447238 ID=MsG0580026251.01.T01:cds;Parent=MsG0580026251.01.T01
Chr5 three_prime_UTR 33447352 33447708 33447352 ID=MsG0580026251.01.T01:three_prime_utr;Parent=MsG0580026251.01.T01
Gene Sequence

>MsG0580026251.01.T01

ATGAAAACCAAAATGTTGGCTGGATTAGTAAAGAAGTTAGCTTCTACCACAATGGGAAGTTGTGGTTCAAAACCAAATGGGAAGAGCAAGGGTCACAAAAGAAGGAGTCATAAATCTGGAAAGCGCAGAGGAAACGTTTCCTCTGCGCTTCCAGAGTTGCCTTTGAAAAGGGTTAGCAATGCAGGAAACCGCGTGGGAGATTTTAATCTCAGTGAATTTGTTCACCTGGATTTTGACAAAGGTGGTTCGGCTGCCTGTAGGAGATCAGAGGTTTCAAATGTCAAGTTTCATCTTACCCAGGTTCAATACCATAGTCAAATAGATACCAATGGAGTATACCAAGAGGATGCATGGTTTGACTCAGTTGACATAATAGAAGAATCCGATTCAGATGATGACTTCAGTAGTGTTCATGGAGATTGTTTTCCTTTCGCCAGCGGCAACGCCATTGGAAATGTCCCAAATACCCAGTTACTCCAGTATGAAAGTTCATCCTGCTTTGTAGATTCAGGGTGCAAATATGAGGAGTTTTATGAGAGCTACCTCAAGATAGATAAGAATGGAGAGAAGATTCAAGAAAACAATTCAAAACAATCAACTGTTATCATGCTTTCTGTCACAAGAAAATCAATTGATGCAAATGAAAAGAATGATATATGTGCATCTGAGAGATTTCTTTATCGTCCGAGAGCAGGGATTCAAGTTCCAGTTTCAACTCAAGAAAAGGCATTCCCTGGTTCCTGGTCTGTAATTTCGCCTTCAGTGTTCAAGCTCCGCAGCGAAACATTTTTCAGAGATAAGCAAAAGGCTCCTGCTCCAGATGTCTGCCCTTACAAACCAATAGGTGTTGATTTATTTGTGAGTCCAAGGAAGATAAATCACATTGCTAAGCATATTGAACTTCCAAGTGTCGGTGAACATCCAAATGTACCTTCACTTCTCATTGTAAATATACAGTTGCCTACATATCCTGCTAGCATGTTCATTGGTGATGCCAATGGAGAAGGCTTGAGCCTTGTACTATATTTTAAGTTGTCAGAGAATTTCGAAAAGGAGATCTCGCCGTGTTTTCAGGATAAGATCAAGAGATTAGTGGATGATGAGATGGAAAAGGTTAAAGGGTATGCAAAGGAAAGCTCAGTTCCCTTTAGAGAAAGACTCAAAATTTTGGCTGGAGTAGTTAATCCGGAAGACCTTAATCTGAGTTCTGCAGAGAGGAAACTTATACATGCTTACAATGGCAAGCCCGTGCTTTCGCGTCCTCAACACCAATTCTTTAAGGGACCTAACTACTTTGAGATAGACCTCGACATACACCGTTTTAGCTATATATCGAGGAAGGGACTTGATTCACTTCGAGACCGTGTAAAGAATGGAATACTTGATGTTGGATTAACTATCCAGGCACAAAAGGAAGAGGAACTTCCTGAGCAAGTGTTGTGCTGTTTAAGATTGAATAAAATTGACTTTGTTAACCATGGTCAAATTCCTACCATTATGGCTCTTGAAGACAAATGA
Protein sequence

>MsG0580026251.01.T01

MKTKMLAGLVKKLASTTMGSCGSKPNGKSKGHKRRSHKSGKRRGNVSSALPELPLKRVSNAGNRVGDFNLSEFVHLDFDKGGSAACRRSEVSNVKFHLTQVQYHSQIDTNGVYQEDAWFDSVDIIEESDSDDDFSSVHGDCFPFASGNAIGNVPNTQLLQYESSSCFVDSGCKYEEFYESYLKIDKNGEKIQENNSKQSTVIMLSVTRKSIDANEKNDICASERFLYRPRAGIQVPVSTQEKAFPGSWSVISPSVFKLRSETFFRDKQKAPAPDVCPYKPIGVDLFVSPRKINHIAKHIELPSVGEHPNVPSLLIVNIQLPTYPASMFIGDANGEGLSLVLYFKLSENFEKEISPCFQDKIKRLVDDEMEKVKGYAKESSVPFRERLKILAGVVNPEDLNLSSAERKLIHAYNGKPVLSRPQHQFFKGPNYFEIDLDIHRFSYISRKGLDSLRDRVKNGILDVGLTIQAQKEEELPEQVLCCLRLNKIDFVNHGQIPTIMALEDK*