AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580026686.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580026686.01.T01 MTR_5g044710 89.924 397 20 3 54 433 4 397 0.0 708
MsG0580026686.01.T01 MTR_5g044710 92.923 325 7 2 122 433 2 323 0.0 603
MsG0580026686.01.T01 MTR_5g045530 80.750 400 55 5 54 433 4 401 0.0 583
MsG0580026686.01.T01 MTR_5g045520 76.368 402 69 5 54 433 30 427 0.0 576
MsG0580026686.01.T01 MTR_5g045520 76.368 402 69 5 54 433 4 401 0.0 576
MsG0580026686.01.T01 MTR_1388s0010 70.000 60 15 1 1 57 1 60 1.66e-20 85.5
MsG0580026686.01.T01 MTR_0046s0080 73.016 63 14 1 1 60 1 63 8.59e-20 88.6
MsG0580026686.01.T01 MTR_7g445460 78.846 52 11 0 1 52 1 52 1.62e-19 87.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580026686.01.T01 AT2G03530 71.500 400 89 5 54 433 4 398 0.0 547
MsG0580026686.01.T01 AT2G03530 71.500 400 89 5 54 433 4 398 0.0 547
MsG0580026686.01.T01 AT2G03590 70.781 397 89 4 54 433 4 390 0.0 537
MsG0580026686.01.T01 AT2G03590 70.781 397 89 4 54 433 4 390 0.0 537
MsG0580026686.01.T01 AT2G03530 70.899 378 85 5 54 411 4 376 1.14e-180 513
MsG0580026686.01.T01 AT1G26440 62.871 404 120 5 54 433 12 409 7.51e-171 485
MsG0580026686.01.T01 AT1G26440 62.871 404 120 5 54 433 12 409 7.51e-171 485
MsG0580026686.01.T01 AT2G03520 66.579 380 105 4 72 433 26 401 2.57e-168 478
MsG0580026686.01.T01 AT2G03530 73.585 318 66 3 129 433 1 313 1.56e-156 445
MsG0580026686.01.T01 AT2G03530 73.585 318 66 3 129 433 1 313 1.56e-156 445
MsG0580026686.01.T01 AT1G26440 57.683 397 116 5 54 433 12 373 5.09e-146 421
MsG0580026686.01.T01 AT1G26440 56.436 404 111 6 54 433 12 374 1.22e-145 420
MsG0580026686.01.T01 AT1G26440 66.978 321 97 2 122 433 16 336 1.42e-145 418
MsG0580026686.01.T01 AT1G26440 66.978 321 97 2 122 433 16 336 1.42e-145 418
MsG0580026686.01.T01 AT2G03600 58.841 328 109 6 54 369 4 317 1.01e-124 365
MsG0580026686.01.T01 AT2G03600 57.751 329 119 6 54 369 4 325 9.93e-124 363
MsG0580026686.01.T01 AT1G26440 58.879 321 88 3 122 433 16 301 2.26e-120 353
MsG0580026686.01.T01 AT1G26440 50.877 399 114 6 54 433 12 347 3.57e-118 349
MsG0580026686.01.T01 AT2G03600 65.714 245 57 3 72 303 26 256 3.70e-105 312
MsG0580026686.01.T01 AT2G03600 65.714 245 57 3 72 303 26 256 3.70e-105 312
MsG0580026686.01.T01 AT2G03600 56.552 290 72 5 54 303 4 279 1.86e-99 298
MsG0580026686.01.T01 AT2G03600 61.702 188 45 3 129 303 1 174 4.22e-69 217

Find 98 sgRNAs with CRISPR-Local

Find 371 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCACTTGTGAGCACTTTC+TGG 0.038144 5:-42405103 MsG0580026686.01.T01:CDS
ATCATCATTAAAGGCTTATT+TGG 0.071850 5:-42405403 MsG0580026686.01.T01:CDS
TGGGAATGGCCTTCAATTTA+TGG 0.139096 5:-42405328 MsG0580026686.01.T01:CDS
TAAGCCTTTAATGATGATTT+TGG 0.158866 5:+42405408 None:intergenic
GCTGGTCTCCTTTGTGGATT+TGG 0.175727 5:-42405348 MsG0580026686.01.T01:CDS
TATCTGGCTCCACTTGAATT+TGG 0.197318 5:+42408599 None:intergenic
CTTACCAAAATCATCATTAA+AGG 0.202831 5:-42405412 MsG0580026686.01.T01:CDS
AGGCAGTATAAACACTTAAA+TGG 0.211882 5:+42405511 None:intergenic
ATTTCAACTAACTCATGTTT+AGG 0.253652 5:+42410692 None:intergenic
GCTTTCACCTTTGGTCAAAT+TGG 0.256882 5:-42408326 MsG0580026686.01.T01:CDS
CTGGTCTCCTTTGTGGATTT+GGG 0.268069 5:-42405347 MsG0580026686.01.T01:CDS
GTTATCATTGCTTTCACCTT+TGG 0.272469 5:-42408335 MsG0580026686.01.T01:CDS
GCCAGCTGTGATGACTTTAT+TGG 0.290683 5:-42408423 MsG0580026686.01.T01:intron
ATTCTCACCAGCATTCAATT+TGG 0.294819 5:-42405574 MsG0580026686.01.T01:CDS
TTGGCTATAACTTTCTTTGC+AGG 0.303190 5:-42405612 MsG0580026686.01.T01:CDS
GCAGTGCTCATGGCATCGTC+TGG 0.309724 5:-42404990 MsG0580026686.01.T01:CDS
TAAGATTAGTCTTAAGGAAT+TGG 0.318776 5:-42410801 MsG0580026686.01.T01:CDS
TAAAGGCTTATTTGGGAGAT+TGG 0.323288 5:-42405395 MsG0580026686.01.T01:CDS
GGCAGTATAAACACTTAAAT+GGG 0.325531 5:+42405512 None:intergenic
TCCACTTGTGAGCACTTTCT+GGG 0.325696 5:-42405102 MsG0580026686.01.T01:CDS
TTTCAACTAACTCATGTTTA+GGG 0.330081 5:+42410693 None:intergenic
TCAAGTATAACTGTTGTTAT+AGG 0.331374 5:-42406679 MsG0580026686.01.T01:intron
CCAATACCAATTTCAATATC+TGG 0.333020 5:+42408583 None:intergenic
GTGGAGCCAGATATTGAAAT+TGG 0.350062 5:-42408589 MsG0580026686.01.T01:intron
CTCCTTTGTGGATTTGGGAA+TGG 0.350731 5:-42405342 MsG0580026686.01.T01:CDS
GGGAATGGCCTTCAATTTAT+GGG 0.353628 5:-42405327 MsG0580026686.01.T01:CDS
CAGTGGCACACTTTAGATAA+AGG 0.354076 5:-42405540 MsG0580026686.01.T01:CDS
TTGTTGGCTGGTCTCCTTTG+TGG 0.367617 5:-42405354 MsG0580026686.01.T01:CDS
AAACACTGCAGTTCCTGCTT+TGG 0.374306 5:+42405953 None:intergenic
TCAATCTAAGATTAGTCTTA+AGG 0.376067 5:-42410807 MsG0580026686.01.T01:CDS
CTTGGAAAGAGCACATTCAT+TGG 0.376451 5:-42405636 MsG0580026686.01.T01:CDS
TAAACATGAGTTAGTTGAAA+TGG 0.376757 5:-42410690 MsG0580026686.01.T01:CDS
TCATCATTAAAGGCTTATTT+GGG 0.380410 5:-42405402 MsG0580026686.01.T01:CDS
GAAAGCTGAGACAAGAAGTT+AGG 0.386639 5:+42408293 None:intergenic
TGGTAGAGGCTGGGCATTGT+TGG 0.403093 5:-42405370 MsG0580026686.01.T01:CDS
CTATAGATGACTATTTGAAT+AGG 0.404592 5:-42410751 MsG0580026686.01.T01:CDS
CTTCTTGTCTCAGCTTTCTC+AGG 0.405118 5:-42408288 MsG0580026686.01.T01:intron
AGTGGCACACTTTAGATAAA+GGG 0.406481 5:-42405539 MsG0580026686.01.T01:CDS
TCTGTTCTATTTGCCATGGC+TGG 0.406796 5:-42406784 MsG0580026686.01.T01:CDS
ATTGAATGCTGGTGAGAATA+GGG 0.408151 5:+42405578 None:intergenic
AGAGGCTGGGCATTGTTGGC+TGG 0.411782 5:-42405366 MsG0580026686.01.T01:CDS
TTGGGAGATTGGAATGGTAG+AGG 0.424567 5:-42405384 MsG0580026686.01.T01:CDS
AATTGAATGCTGGTGAGAAT+AGG 0.431496 5:+42405577 None:intergenic
GCCTTCTGTTCTATTTGCCA+TGG 0.436677 5:-42406788 MsG0580026686.01.T01:CDS
GAATAGGTTCAGACTCTTGA+AGG 0.438733 5:-42410735 MsG0580026686.01.T01:CDS
TTTGTCCACTCAGTATGCTT+GGG 0.439898 5:-42406737 MsG0580026686.01.T01:CDS
ATTTGTCCACTCAGTATGCT+TGG 0.448183 5:-42406738 MsG0580026686.01.T01:CDS
CTACACCATCACTAATCTCT+TGG 0.456636 5:-42408363 MsG0580026686.01.T01:CDS
AGTGATGGTGTAGTCAAGAT+AGG 0.456695 5:+42408373 None:intergenic
CTGCTCCTCCTCGAGATCTC+AGG 0.463194 5:+42408623 None:intergenic
TTGGAAAGAGCACATTCATT+GGG 0.472781 5:-42405635 MsG0580026686.01.T01:CDS
CTTGTCCTCCCATAAATTGA+AGG 0.476158 5:+42405319 None:intergenic
GAAGGTGATGTTTAGAATGA+TGG 0.478524 5:+42405455 None:intergenic
AGGAGAACATATACACTGCT+TGG 0.486463 5:-42405044 MsG0580026686.01.T01:CDS
AAATAGTCATCTATAGATTC+TGG 0.488438 5:+42410758 None:intergenic
TTAAACCATTTGCAGGTGCT+TGG 0.491646 5:-42405654 MsG0580026686.01.T01:intron
TGCAGCTGTCGCAGTGCTCA+TGG 0.495704 5:-42405000 MsG0580026686.01.T01:CDS
GGTGGTGTTGTCCTTAGCAT+TGG 0.499113 5:-42406763 MsG0580026686.01.T01:CDS
AGTTCAAGACAGGGTGGTAA+AGG 0.499357 5:+42405433 None:intergenic
GATTCAAAGGATCTAGAGAA+TGG 0.503223 5:-42405990 MsG0580026686.01.T01:CDS
AAAGAGCACATTCATTGGGT+TGG 0.505226 5:-42405631 MsG0580026686.01.T01:CDS
GAGATTGGAATGGTAGAGGC+TGG 0.510826 5:-42405380 MsG0580026686.01.T01:CDS
GGAGAACATATACACTGCTT+GGG 0.520576 5:-42405043 MsG0580026686.01.T01:CDS
TACATAAACAGATGATTCAA+AGG 0.527343 5:-42406003 MsG0580026686.01.T01:intron
CAGTGCTCATGGCATCGTCT+GGG 0.528454 5:-42404989 MsG0580026686.01.T01:CDS
TTTGTTGCCAAATTGAATGC+TGG 0.537646 5:+42405567 None:intergenic
GTTCTATTTGCCATGGCTGG+TGG 0.543695 5:-42406781 MsG0580026686.01.T01:CDS
CCCCAGAAAGTGCTCACAAG+TGG 0.548827 5:+42405101 None:intergenic
AATGCAAACAAAGCCAAAGC+AGG 0.561781 5:-42405966 MsG0580026686.01.T01:CDS
AGGTTCAGACTCTTGAAGGC+AGG 0.566284 5:-42410731 MsG0580026686.01.T01:CDS
CTGTGATGACTTTATTGGAA+AGG 0.567287 5:-42408418 MsG0580026686.01.T01:CDS
TTTATGGGAGGACAAGCTGC+TGG 0.568138 5:-42405312 MsG0580026686.01.T01:CDS
CCACTTGTGAGCACTTTCTG+GGG 0.568469 5:-42405101 MsG0580026686.01.T01:CDS
CTTTATCTAAAGTGTGCCAC+TGG 0.570037 5:+42405541 None:intergenic
TGGACAAATTTCCAATGCTA+AGG 0.572809 5:+42406752 None:intergenic
GCTTATTTGGGAGATTGGAA+TGG 0.576513 5:-42405390 MsG0580026686.01.T01:CDS
GCCATGGCAAATAGAACAGA+AGG 0.577335 5:+42406787 None:intergenic
AGGAGCAGTCCAAATTCAAG+TGG 0.581125 5:-42408608 MsG0580026686.01.T01:CDS
AAGGACAACACCACCAGCCA+TGG 0.585100 5:+42406771 None:intergenic
ATCAGTGCCAATTTGACCAA+AGG 0.592220 5:+42408319 None:intergenic
CAAGACAGGGTGGTAAAGGA+AGG 0.602138 5:+42405437 None:intergenic
AGATTGGAATGGTAGAGGCT+GGG 0.609712 5:-42405379 MsG0580026686.01.T01:CDS
GTGGCACACTTTAGATAAAG+GGG 0.613700 5:-42405538 MsG0580026686.01.T01:CDS
GAGTTAGTTGAAATGGCTGC+TGG 0.617016 5:-42410683 MsG0580026686.01.T01:intron
GCGAGTATAGAAAATCATCA+AGG 0.624685 5:-42405064 MsG0580026686.01.T01:CDS
AGCAGCCAAGAGATTAGTGA+TGG 0.628687 5:+42408358 None:intergenic
TGATAATAAGACTAAGCTCA+AGG 0.631837 5:-42406428 MsG0580026686.01.T01:CDS
ATGACTTTATTGGAAAGGAG+AGG 0.632269 5:-42408413 MsG0580026686.01.T01:CDS
GATTCGAGCCTGAGATCTCG+AGG 0.643385 5:-42408631 MsG0580026686.01.T01:CDS
AATGGCCTTCAATTTATGGG+AGG 0.654553 5:-42405324 MsG0580026686.01.T01:CDS
ACTTTGAATGAAGAAAGTAA+AGG 0.657392 5:-42406097 MsG0580026686.01.T01:intron
GGCCATTCCCAAATCCACAA+AGG 0.662272 5:+42405340 None:intergenic
TAGTCAAGATAGGTGTGCTG+AGG 0.663042 5:+42408383 None:intergenic
GCAGTATAAACACTTAAATG+GGG 0.664993 5:+42405513 None:intergenic
TTGGTAAGTTCAAGACAGGG+TGG 0.675501 5:+42405427 None:intergenic
ATTTGGCAACAAATGACCAG+TGG 0.685835 5:-42405557 MsG0580026686.01.T01:CDS
TCGAGCCTGAGATCTCGAGG+AGG 0.702169 5:-42408628 MsG0580026686.01.T01:CDS
AAAAGCCCAAGCATACTGAG+TGG 0.720310 5:+42406732 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTAAAAAAAATGTAAATTT+AGG - Chr5:42405872-42405891 MsG0580026686.01.T01:intron 10.0%
!! TTTATTAGAATTTAAATGAT+GGG + Chr5:42408033-42408052 None:intergenic 10.0%
!!! GTTTTTTCATTTTTTTAATT+GGG + Chr5:42408120-42408139 None:intergenic 10.0%
!!! TGTTTTTTCATTTTTTTAAT+TGG + Chr5:42408121-42408140 None:intergenic 10.0%
!!! TTTTATTAGAATTTAAATGA+TGG + Chr5:42408034-42408053 None:intergenic 10.0%
!! AATATTTCAACCTTTAAATT+AGG - Chr5:42406202-42406221 MsG0580026686.01.T01:intron 15.0%
!! TAATTCCTAGAAAAAAAAAT+TGG + Chr5:42408739-42408758 None:intergenic 15.0%
!! TGAAAAAATAAGAAAGAAAT+GGG + Chr5:42407856-42407875 None:intergenic 15.0%
!! TTGAAAAAATAAGAAAGAAA+TGG + Chr5:42407857-42407876 None:intergenic 15.0%
!! TTTAGTTAATGAATAAAACT+TGG + Chr5:42405779-42405798 None:intergenic 15.0%
!!! AAAACATGTTTTTAGTATTA+AGG - Chr5:42405511-42405530 MsG0580026686.01.T01:CDS 15.0%
!!! AAACATGTTTTTAGTATTAA+GGG - Chr5:42405512-42405531 MsG0580026686.01.T01:CDS 15.0%
!!! ACATAAATTTGTTTTTCTTA+AGG + Chr5:42405706-42405725 None:intergenic 15.0%
!!! ATATTTTAAACGATAAAAAG+AGG - Chr5:42407908-42407927 MsG0580026686.01.T01:intron 15.0%
!!! CATAAATTTGTTTTTCTTAA+GGG + Chr5:42405705-42405724 None:intergenic 15.0%
!!! TAGAAAAATTTATTTTGCTT+TGG - Chr5:42406858-42406877 MsG0580026686.01.T01:intron 15.0%
!! AAAGTAAAGGTAACAATATT+TGG - Chr5:42409705-42409724 MsG0580026686.01.T01:intron 20.0%
!! ATAAAACATTTCATCACATT+TGG + Chr5:42405468-42405487 None:intergenic 20.0%
!! ATAAAGGAAAAAAACAAAGA+TGG + Chr5:42406557-42406576 None:intergenic 20.0%
!! ATCATGTAAAAACATTAACT+AGG - Chr5:42406661-42406680 MsG0580026686.01.T01:intron 20.0%
!! ATGTAATAAAGATCATGAAT+AGG + Chr5:42409771-42409790 None:intergenic 20.0%
!! GACTTAATGTAATACTATTT+CGG + Chr5:42406590-42406609 None:intergenic 20.0%
!! GGATGAAAAAATATATAGTT+CGG - Chr5:42406372-42406391 MsG0580026686.01.T01:intron 20.0%
!! TAAAGGAAAAAAACAAAGAT+GGG + Chr5:42406556-42406575 None:intergenic 20.0%
!! TCACAATCACAAATAAAAAA+TGG - Chr5:42408822-42408841 MsG0580026686.01.T01:intron 20.0%
!! TGAAAGATTAACATATGAAA+AGG - Chr5:42405212-42405231 MsG0580026686.01.T01:intron 20.0%
!! TGAGTATCATAAAAAAGATA+AGG - Chr5:42405245-42405264 MsG0580026686.01.T01:intron 20.0%
!! TGTTTATTCTAAATTGAAAG+AGG - Chr5:42407548-42407567 MsG0580026686.01.T01:intron 20.0%
!! TTTGTCGTATAAATGATTAA+AGG - Chr5:42405742-42405761 MsG0580026686.01.T01:intron 20.0%
!!! AAAATATGTTATTTTTCCAG+GGG - Chr5:42409656-42409675 MsG0580026686.01.T01:intron 20.0%
!!! AGTTGGTTTTTTAAATGTAA+AGG + Chr5:42408710-42408729 None:intergenic 20.0%
!!! ATTTTGTTCTAGATTACTTT+TGG - Chr5:42409547-42409566 MsG0580026686.01.T01:intron 20.0%
!!! CAAAATATGTTATTTTTCCA+GGG - Chr5:42409655-42409674 MsG0580026686.01.T01:intron 20.0%
!!! CACAACATTGAATTATTTTT+TGG - Chr5:42409241-42409260 MsG0580026686.01.T01:intron 20.0%
!!! GACTTTTAGTTTTCATATAA+TGG + Chr5:42406015-42406034 None:intergenic 20.0%
!!! GATATTTTACTTCAATAACT+TGG - Chr5:42406464-42406483 MsG0580026686.01.T01:CDS 20.0%
!!! GCAACAAATTTATCATTTTT+AGG + Chr5:42405422-42405441 None:intergenic 20.0%
!!! GTATAAAACTTTTCTAGATT+TGG - Chr5:42405543-42405562 MsG0580026686.01.T01:CDS 20.0%
!!! GTGTTTAACTTTAAAGAAAA+TGG - Chr5:42408084-42408103 MsG0580026686.01.T01:intron 20.0%
!!! TAGATGATATTTTTAGTCAT+GGG - Chr5:42407617-42407636 MsG0580026686.01.T01:intron 20.0%
!!! TATAATTTGAGGCAAAAAAT+AGG + Chr5:42407721-42407740 None:intergenic 20.0%
!!! TATCACAACTAATCATATTT+TGG - Chr5:42409436-42409455 MsG0580026686.01.T01:intron 20.0%
!!! TATTTTTAAAAAACCTTCAG+TGG - Chr5:42405832-42405851 MsG0580026686.01.T01:intron 20.0%
!!! TCTTATTTGGTTATAATTTG+AGG + Chr5:42407732-42407751 None:intergenic 20.0%
!!! TTAGATGATATTTTTAGTCA+TGG - Chr5:42407616-42407635 MsG0580026686.01.T01:intron 20.0%
!!! TTAGTTTTCATATAATGGAA+AGG + Chr5:42406010-42406029 None:intergenic 20.0%
! AAATAGTCATCTATAGATTC+TGG + Chr5:42405034-42405053 None:intergenic 25.0%
! AATGATTAAAGGTAACATAG+AGG - Chr5:42405753-42405772 MsG0580026686.01.T01:intron 25.0%
! AATTAGACATTCAATACCTA+AGG - Chr5:42405154-42405173 MsG0580026686.01.T01:intron 25.0%
! ACAAGTCATATGAAATTTCT+TGG - Chr5:42407261-42407280 MsG0580026686.01.T01:intron 25.0%
! ACTTTGAATGAAGAAAGTAA+AGG - Chr5:42409692-42409711 MsG0580026686.01.T01:intron 25.0%
! AGAGACTGAAAAATAAAAGA+AGG + Chr5:42410301-42410320 None:intergenic 25.0%
! ATCATCATTAAAGGCTTATT+TGG - Chr5:42410386-42410405 MsG0580026686.01.T01:intron 25.0%
! ATTAGACATTCAATACCTAA+GGG - Chr5:42405155-42405174 MsG0580026686.01.T01:intron 25.0%
! ATTTCAACTAACTCATGTTT+AGG + Chr5:42405100-42405119 None:intergenic 25.0%
! CATTAAGTTAATCTGTCAAA+TGG - Chr5:42406633-42406652 MsG0580026686.01.T01:intron 25.0%
! CTATAGATGACTATTTGAAT+AGG - Chr5:42405038-42405057 MsG0580026686.01.T01:CDS 25.0%
! CTCATATTAGAAGATACAAA+AGG - Chr5:42408281-42408300 MsG0580026686.01.T01:intron 25.0%
! CTTACCAAAATCATCATTAA+AGG - Chr5:42410377-42410396 MsG0580026686.01.T01:intron 25.0%
! GTTAAAACAACAATCAATTG+CGG - Chr5:42406052-42406071 MsG0580026686.01.T01:intron 25.0%
! GTTATGCAAATAAAGAAAGA+GGG + Chr5:42408387-42408406 None:intergenic 25.0%
! TAAACATGAGTTAGTTGAAA+TGG - Chr5:42405099-42405118 MsG0580026686.01.T01:CDS 25.0%
! TACATAAACAGATGATTCAA+AGG - Chr5:42409786-42409805 MsG0580026686.01.T01:intron 25.0%
! TATGGCATAATTAGCATATA+TGG - Chr5:42405179-42405198 MsG0580026686.01.T01:intron 25.0%
! TCAAAGTTAATTATGTGTGA+GGG + Chr5:42406808-42406827 None:intergenic 25.0%
! TCAAGTATAACTGTTGTTAT+AGG - Chr5:42409110-42409129 MsG0580026686.01.T01:intron 25.0%
! TCATCATTAAAGGCTTATTT+GGG - Chr5:42410387-42410406 MsG0580026686.01.T01:intron 25.0%
! TCGATCATAACCTAATTTAA+AGG + Chr5:42406215-42406234 None:intergenic 25.0%
! TGAAAAAACATTCAACTTGT+AGG - Chr5:42408131-42408150 MsG0580026686.01.T01:intron 25.0%
! TGAGAAAAAAAGATCCATTA+AGG - Chr5:42409870-42409889 MsG0580026686.01.T01:intron 25.0%
! TGCTTATATTTAAGTCCAAA+TGG + Chr5:42410616-42410635 None:intergenic 25.0%
! TTACCTTATCTGATAAATGT+TGG - Chr5:42409745-42409764 MsG0580026686.01.T01:intron 25.0%
! TTATGCAAATAAAGAAAGAG+GGG + Chr5:42408386-42408405 None:intergenic 25.0%
! TTCAAAGTTAATTATGTGTG+AGG + Chr5:42406809-42406828 None:intergenic 25.0%
! TTTCAACTAACTCATGTTTA+GGG + Chr5:42405099-42405118 None:intergenic 25.0%
! TTTGCATTCATACTCTTATT+TGG + Chr5:42407745-42407764 None:intergenic 25.0%
!! AAAAAATATATAGTTCGGTG+AGG - Chr5:42406377-42406396 MsG0580026686.01.T01:intron 25.0%
!! ACTTTGTATGATAATGTATG+GGG + Chr5:42408481-42408500 None:intergenic 25.0%
!! AGACTTTGTATGATAATGTA+TGG + Chr5:42408483-42408502 None:intergenic 25.0%
!! AGTAAAATATCTACTAGCTT+TGG + Chr5:42406455-42406474 None:intergenic 25.0%
!! CCTGGAAAAATAACATATTT+TGG + Chr5:42409657-42409676 None:intergenic 25.0%
!! CTTAAGGGTATATATAACTT+TGG + Chr5:42405690-42405709 None:intergenic 25.0%
!! GAATGTCTAATTTTTCGTAA+TGG + Chr5:42405146-42405165 None:intergenic 25.0%
!! GACTTTGTATGATAATGTAT+GGG + Chr5:42408482-42408501 None:intergenic 25.0%
!! GCAAAAATGTACGTATATTT+TGG - Chr5:42410633-42410652 MsG0580026686.01.T01:intron 25.0%
!! TAAGCCTTTAATGATGATTT+TGG + Chr5:42410384-42410403 None:intergenic 25.0%
!! TTTTAAATGTAAAGGCTTCA+TGG + Chr5:42408702-42408721 None:intergenic 25.0%
!! TTTTATTCAGATACTCCATT+TGG - Chr5:42410598-42410617 MsG0580026686.01.T01:intron 25.0%
!!! AAATATGTTATTTTTCCAGG+GGG - Chr5:42409657-42409676 MsG0580026686.01.T01:intron 25.0%
!!! ACGATTGAAGTTTTAAACTT+CGG + Chr5:42409958-42409977 None:intergenic 25.0%
!!! ACGTATATTTTGGTATTTGA+AGG - Chr5:42410643-42410662 MsG0580026686.01.T01:intron 25.0%
!!! ACTCTCCAATTTTTTTTTCT+AGG - Chr5:42408731-42408750 MsG0580026686.01.T01:intron 25.0%
!!! CCAAAATATGTTATTTTTCC+AGG - Chr5:42409654-42409673 MsG0580026686.01.T01:intron 25.0%
!!! GAAGCATCTTTTTATCTTTT+CGG + Chr5:42409524-42409543 None:intergenic 25.0%
!!! GGTATATATAACTTTGGTTT+TGG + Chr5:42405684-42405703 None:intergenic 25.0%
!!! GTTTTATCTCTAGAGAAAAT+GGG - Chr5:42405481-42405500 MsG0580026686.01.T01:CDS 25.0%
!!! TAAGATTAGTCTTAAGGAAT+TGG - Chr5:42404988-42405007 MsG0580026686.01.T01:CDS 25.0%
!!! TCAATCTAAGATTAGTCTTA+AGG - Chr5:42404982-42405001 MsG0580026686.01.T01:CDS 25.0%
!!! TGTTTTATCTCTAGAGAAAA+TGG - Chr5:42405480-42405499 MsG0580026686.01.T01:CDS 25.0%
AAAAAAATTGGAGAGTGAGT+TGG + Chr5:42408727-42408746 None:intergenic 30.0%
AAAAACATTCAACTTGTAGG+AGG - Chr5:42408134-42408153 MsG0580026686.01.T01:intron 30.0%
AACAAGTAGATTCTTCAAGT+TGG + Chr5:42406104-42406123 None:intergenic 30.0%
AAGTTGTTTACCTTAGTTAC+TGG + Chr5:42408570-42408589 None:intergenic 30.0%
AGCATCTTATAAACATACGA+AGG + Chr5:42405368-42405387 None:intergenic 30.0%
AGCATTTCTAATCATCTCTT+AGG - Chr5:42406077-42406096 MsG0580026686.01.T01:intron 30.0%
AGGCAGTATAAACACTTAAA+TGG + Chr5:42410281-42410300 None:intergenic 30.0%
AGTTGTTTACCTTAGTTACT+GGG + Chr5:42408569-42408588 None:intergenic 30.0%
ATACAAAGTCTATAACCTTC+CGG - Chr5:42408492-42408511 MsG0580026686.01.T01:intron 30.0%
CCAATACCAATTTCAATATC+TGG + Chr5:42407209-42407228 None:intergenic 30.0%
CCAGATATTGAAATTGGTAT+TGG - Chr5:42407206-42407225 MsG0580026686.01.T01:intron 30.0%
CTTTGGTACATTGTTGAAAT+TGG - Chr5:42406875-42406894 MsG0580026686.01.T01:intron 30.0%
GACATTATAGTCATAATCCA+AGG + Chr5:42409618-42409637 None:intergenic 30.0%
GAGTTGAAAAATGTATATGG+TGG - Chr5:42407285-42407304 MsG0580026686.01.T01:intron 30.0%
GATTAACATATGAAAAGGCT+AGG - Chr5:42405217-42405236 MsG0580026686.01.T01:intron 30.0%
GCAGTATAAACACTTAAATG+GGG + Chr5:42410279-42410298 None:intergenic 30.0%
GGCAGTATAAACACTTAAAT+GGG + Chr5:42410280-42410299 None:intergenic 30.0%
GGTTATGCAAATAAAGAAAG+AGG + Chr5:42408388-42408407 None:intergenic 30.0%
TAGAAAAATGCAGACAAACA+CGG - Chr5:42410005-42410024 MsG0580026686.01.T01:intron 30.0%
TATGAAAACTAAAAGTCGCA+TGG - Chr5:42406018-42406037 MsG0580026686.01.T01:intron 30.0%
TGATAATAAGACTAAGCTCA+AGG - Chr5:42409361-42409380 MsG0580026686.01.T01:intron 30.0%
TGATTATGTCGAATAAAGTG+AGG - Chr5:42405316-42405335 MsG0580026686.01.T01:CDS 30.0%
! AACTATGCTTTAGACAATGA+AGG - Chr5:42410087-42410106 MsG0580026686.01.T01:intron 30.0%
! AATCATTTCTGATTTTGCCT+TGG - Chr5:42409598-42409617 MsG0580026686.01.T01:intron 30.0%
! AATCTATCCGGTGTTAATTT+GGG + Chr5:42407142-42407161 None:intergenic 30.0%
! AATTTGAGGCAAAAAATAGG+TGG + Chr5:42407718-42407737 None:intergenic 30.0%
! ACAATTGAAATCTGCGTTTT+TGG + Chr5:42406976-42406995 None:intergenic 30.0%
! AGAATAATGACTTGCCTTAA+TGG + Chr5:42409887-42409906 None:intergenic 30.0%
! AGGTAACATCTATTTTCTTC+AGG - Chr5:42406681-42406700 MsG0580026686.01.T01:CDS 30.0%
! ATTTTCCACTTTCTTCTTTG+TGG - Chr5:42407813-42407832 MsG0580026686.01.T01:intron 30.0%
! CTAATTTTTACCAGAGAACT+TGG + Chr5:42406425-42406444 None:intergenic 30.0%
! GGTGAGTTGAAAAATGTATA+TGG - Chr5:42407282-42407301 MsG0580026686.01.T01:intron 30.0%
! TTTTCCACTTTCTTCTTTGT+GGG - Chr5:42407814-42407833 MsG0580026686.01.T01:intron 30.0%
!! AATAAGAAAGAAATGGGTTG+AGG + Chr5:42407850-42407869 None:intergenic 30.0%
!! ATAAGAAAGAAATGGGTTGA+GGG + Chr5:42407849-42407868 None:intergenic 30.0%
!! ATTTTGGTAAGTTCAAGACA+GGG + Chr5:42410368-42410387 None:intergenic 30.0%
!! TTTCGGTCTTTTGACTATAA+AGG + Chr5:42406573-42406592 None:intergenic 30.0%
!! TTTTCGTAATGGAATAGTCT+AGG + Chr5:42405135-42405154 None:intergenic 30.0%
!!! AATATGTTATTTTTCCAGGG+GGG - Chr5:42409658-42409677 MsG0580026686.01.T01:intron 30.0%
!!! TTTTTGGTTGCAGTTTGTTT+AGG - Chr5:42409311-42409330 MsG0580026686.01.T01:intron 30.0%
AACCTTGTTCAATTTGTCAC+AGG - Chr5:42409218-42409237 MsG0580026686.01.T01:intron 35.0%
AACTCCAGTTGTTGATCTAA+AGG + Chr5:42406128-42406147 None:intergenic 35.0%
AAGATGCTAAAGTCATCAGA+TGG - Chr5:42405380-42405399 MsG0580026686.01.T01:CDS 35.0%
AATGGAAAGGAATGTGATCT+TGG + Chr5:42405997-42406016 None:intergenic 35.0%
AATTGAATGCTGGTGAGAAT+AGG + Chr5:42410215-42410234 None:intergenic 35.0%
AGGAAAAAAACAAAGATGGG+TGG + Chr5:42406553-42406572 None:intergenic 35.0%
AGGCCAACATTTATCAGATA+AGG + Chr5:42409751-42409770 None:intergenic 35.0%
AGTGGCACACTTTAGATAAA+GGG - Chr5:42410250-42410269 MsG0580026686.01.T01:intron 35.0%
ATGACTTTATTGGAAAGGAG+AGG - Chr5:42407376-42407395 MsG0580026686.01.T01:intron 35.0%
ATTCTCACCAGCATTCAATT+TGG - Chr5:42410215-42410234 MsG0580026686.01.T01:intron 35.0%
ATTGAATCCAATCCTTGTCA+AGG + Chr5:42408259-42408278 None:intergenic 35.0%
ATTGAATGCTGGTGAGAATA+GGG + Chr5:42410214-42410233 None:intergenic 35.0%
CATCCACAAAACTCGAAATT+CGG + Chr5:42406357-42406376 None:intergenic 35.0%
CATTCAATACCTAAGGGATA+TGG - Chr5:42405161-42405180 MsG0580026686.01.T01:intron 35.0%
CTAATTATGCCATATCCCTT+AGG + Chr5:42405173-42405192 None:intergenic 35.0%
CTATTGACGTAGTCATACTT+TGG - Chr5:42406781-42406800 MsG0580026686.01.T01:CDS 35.0%
CTGCAAATGGTTTAACACAA+GGG + Chr5:42410130-42410149 None:intergenic 35.0%
CTGTGATGACTTTATTGGAA+AGG - Chr5:42407371-42407390 MsG0580026686.01.T01:intron 35.0%
GATTCAAAGGATCTAGAGAA+TGG - Chr5:42409799-42409818 MsG0580026686.01.T01:intron 35.0%
GCGAGTATAGAAAATCATCA+AGG - Chr5:42410725-42410744 MsG0580026686.01.T01:CDS 35.0%
GGGTACATATAGATAGAAGA+GGG + Chr5:42408785-42408804 None:intergenic 35.0%
GGTACATATAGATAGAAGAG+GGG + Chr5:42408784-42408803 None:intergenic 35.0%
GTATTATGACTATGTGAACG+TGG + Chr5:42406924-42406943 None:intergenic 35.0%
GTGATCAAGTAAGTGTTTCT+CGG + Chr5:42408806-42408825 None:intergenic 35.0%
GTGTGAAGTCATAAATACAG+TGG - Chr5:42407073-42407092 MsG0580026686.01.T01:intron 35.0%
GTTACCTTTAGATCAACAAC+TGG - Chr5:42406121-42406140 MsG0580026686.01.T01:intron 35.0%
GTTATCATTGCTTTCACCTT+TGG - Chr5:42407454-42407473 MsG0580026686.01.T01:intron 35.0%
GTTGTTTACCTTAGTTACTG+GGG + Chr5:42408568-42408587 None:intergenic 35.0%
TAAAGGCTTATTTGGGAGAT+TGG - Chr5:42410394-42410413 MsG0580026686.01.T01:intron 35.0%
TAGGTTATGATCGAAAGCAA+TGG - Chr5:42406221-42406240 MsG0580026686.01.T01:intron 35.0%
TCCTCACTGAAAGAAAAGTT+AGG + Chr5:42410560-42410579 None:intergenic 35.0%
TGACAAAGAGAATCCAAAAC+AGG - Chr5:42407790-42407809 MsG0580026686.01.T01:intron 35.0%
TGATCAAGTAAGTGTTTCTC+GGG + Chr5:42408805-42408824 None:intergenic 35.0%
TGGACAAATTTCCAATGCTA+AGG + Chr5:42409040-42409059 None:intergenic 35.0%
TTATAAACATACGAAGGTCC+AGG + Chr5:42405362-42405381 None:intergenic 35.0%
TTGGCTATAACTTTCTTTGC+AGG - Chr5:42410177-42410196 MsG0580026686.01.T01:intron 35.0%
TTGTTCACCCAAATTAACAC+CGG - Chr5:42407132-42407151 MsG0580026686.01.T01:intron 35.0%
TTGTTTACCTTAGTTACTGG+GGG + Chr5:42408567-42408586 None:intergenic 35.0%
TTTGTTGCCAAATTGAATGC+TGG + Chr5:42410225-42410244 None:intergenic 35.0%
! AAAGCTGAGATTCTTTTTCC+TGG - Chr5:42409278-42409297 MsG0580026686.01.T01:intron 35.0%
! AAAGTCTTGGTCACTTTCTT+TGG + Chr5:42405286-42405305 None:intergenic 35.0%
! ACCTAACTTTTCTTTCAGTG+AGG - Chr5:42410556-42410575 MsG0580026686.01.T01:intron 35.0%
! ATGATAATGTATGGGGTTGT+GGG + Chr5:42408474-42408493 None:intergenic 35.0%
! CTCAAAAGTTTGAAACCTCT+AGG + Chr5:42406264-42406283 None:intergenic 35.0%
! GAAAGTGGAAAATCCTGTTT+TGG + Chr5:42407806-42407825 None:intergenic 35.0%
! GAAGGTGATGTTTAGAATGA+TGG + Chr5:42410337-42410356 None:intergenic 35.0%
! GAATCTATCCGGTGTTAATT+TGG + Chr5:42407143-42407162 None:intergenic 35.0%
! TATGATAATGTATGGGGTTG+TGG + Chr5:42408475-42408494 None:intergenic 35.0%
! TTGGAAAGAGCACATTCATT+GGG - Chr5:42410154-42410173 MsG0580026686.01.T01:intron 35.0%
!! GATTTTGGTAAGTTCAAGAC+AGG + Chr5:42410369-42410388 None:intergenic 35.0%
!! TAAAGCACCTATTTCTGTAC+CGG - Chr5:42408593-42408612 MsG0580026686.01.T01:CDS 35.0%
AAATTGGATTCCCTCTGTCT+CGG - Chr5:42406891-42406910 MsG0580026686.01.T01:intron 40.0%
AACATTCAACTTGTAGGAGG+AGG - Chr5:42408137-42408156 MsG0580026686.01.T01:intron 40.0%
AATAGACAAGTAGCAGTGGT+TGG - Chr5:42406705-42406724 MsG0580026686.01.T01:CDS 40.0%
AATCCAATCCTTGTCAAGGA+AGG + Chr5:42408255-42408274 None:intergenic 40.0%
AATGCAAACAAAGCCAAAGC+AGG - Chr5:42409823-42409842 MsG0580026686.01.T01:intron 40.0%
AATGGCCTTCAATTTATGGG+AGG - Chr5:42410465-42410484 MsG0580026686.01.T01:intron 40.0%
AATGTGGCAGAATTAAAGCC+TGG - Chr5:42405341-42405360 MsG0580026686.01.T01:CDS 40.0%
ACAACTGGAGTTGTAGAATC+AGG - Chr5:42406136-42406155 MsG0580026686.01.T01:intron 40.0%
AGGAGAACATATACACTGCT+TGG - Chr5:42410745-42410764 MsG0580026686.01.T01:CDS 40.0%
AGGTAATAGACAAGTAGCAG+TGG - Chr5:42406701-42406720 MsG0580026686.01.T01:CDS 40.0%
ATCAGTGCCAATTTGACCAA+AGG + Chr5:42407473-42407492 None:intergenic 40.0%
ATGACCCACAAAGAAGAAAG+TGG + Chr5:42407821-42407840 None:intergenic 40.0%
ATTGTTCGATCTAGATCGAG+CGG + Chr5:42407037-42407056 None:intergenic 40.0%
ATTTCAGGGAAGACCTATGT+GGG + Chr5:42408544-42408563 None:intergenic 40.0%
ATTTGGCAACAAATGACCAG+TGG - Chr5:42410232-42410251 MsG0580026686.01.T01:intron 40.0%
ATTTGTCCACTCAGTATGCT+TGG - Chr5:42409051-42409070 MsG0580026686.01.T01:intron 40.0%
CAGTGGCACACTTTAGATAA+AGG - Chr5:42410249-42410268 MsG0580026686.01.T01:intron 40.0%
CCTGCAAATGGTTTAACACA+AGG + Chr5:42410131-42410150 None:intergenic 40.0%
CCTTGTGTTAAACCATTTGC+AGG - Chr5:42410128-42410147 MsG0580026686.01.T01:intron 40.0%
CGAATAAAGTGAGGTCAATG+TGG - Chr5:42405325-42405344 MsG0580026686.01.T01:CDS 40.0%
CGGGTACATATAGATAGAAG+AGG + Chr5:42408786-42408805 None:intergenic 40.0%
CTACACCATCACTAATCTCT+TGG - Chr5:42407426-42407445 MsG0580026686.01.T01:intron 40.0%
CTCAGTTGTCCGATTTAGAT+TGG - Chr5:42406945-42406964 MsG0580026686.01.T01:intron 40.0%
CTTGTCCTCCCATAAATTGA+AGG + Chr5:42410473-42410492 None:intergenic 40.0%
GAAAGCTGAGACAAGAAGTT+AGG + Chr5:42407499-42407518 None:intergenic 40.0%
GAATAGGTTCAGACTCTTGA+AGG - Chr5:42405054-42405073 MsG0580026686.01.T01:CDS 40.0%
GCTTATTTGGGAGATTGGAA+TGG - Chr5:42410399-42410418 MsG0580026686.01.T01:intron 40.0%
GCTTTCACCTTTGGTCAAAT+TGG - Chr5:42407463-42407482 MsG0580026686.01.T01:intron 40.0%
GGAGAACATATACACTGCTT+GGG - Chr5:42410746-42410765 MsG0580026686.01.T01:CDS 40.0%
GGGAATGGCCTTCAATTTAT+GGG - Chr5:42410462-42410481 MsG0580026686.01.T01:intron 40.0%
GTGGAGCCAGATATTGAAAT+TGG - Chr5:42407200-42407219 MsG0580026686.01.T01:intron 40.0%
GTGGCACACTTTAGATAAAG+GGG - Chr5:42410251-42410270 MsG0580026686.01.T01:intron 40.0%
GTTGTCCGATTTAGATTGGA+CGG - Chr5:42406949-42406968 MsG0580026686.01.T01:intron 40.0%
TCACAAGCAATGCAAAGTCT+TGG + Chr5:42405299-42405318 None:intergenic 40.0%
TCCAATAAAGTCATCACAGC+TGG + Chr5:42407370-42407389 None:intergenic 40.0%
TGCCTGTGACAAATTGAACA+AGG + Chr5:42409223-42409242 None:intergenic 40.0%
TGGGAATGGCCTTCAATTTA+TGG - Chr5:42410461-42410480 MsG0580026686.01.T01:intron 40.0%
TTAAACCATTTGCAGGTGCT+TGG - Chr5:42410135-42410154 MsG0580026686.01.T01:intron 40.0%
TTAGTTACTGGGGGATTTCA+GGG + Chr5:42408558-42408577 None:intergenic 40.0%
TTGGACCGTCCAATCTAAAT+CGG + Chr5:42406957-42406976 None:intergenic 40.0%
TTTGTCCACTCAGTATGCTT+GGG - Chr5:42409052-42409071 MsG0580026686.01.T01:intron 40.0%
! AAAGAGCACATTCATTGGGT+TGG - Chr5:42410158-42410177 MsG0580026686.01.T01:intron 40.0%
! AATGTATATGGTGGAGAGCA+AGG - Chr5:42407294-42407313 MsG0580026686.01.T01:intron 40.0%
! AGTGATGGTGTAGTCAAGAT+AGG + Chr5:42407419-42407438 None:intergenic 40.0%
! ATATGACTAGCCAAGTTCTC+TGG - Chr5:42406412-42406431 MsG0580026686.01.T01:CDS 40.0%
! ATGTATATGGTGGAGAGCAA+GGG - Chr5:42407295-42407314 MsG0580026686.01.T01:intron 40.0%
! CTTGGAAAGAGCACATTCAT+TGG - Chr5:42410153-42410172 MsG0580026686.01.T01:intron 40.0%
! CTTTATCTAAAGTGTGCCAC+TGG + Chr5:42410251-42410270 None:intergenic 40.0%
! GAGATTCTTTTTCCTGGAGT+TGG - Chr5:42409284-42409303 MsG0580026686.01.T01:intron 40.0%
! TATCTGGCTCCACTTGAATT+TGG + Chr5:42407193-42407212 None:intergenic 40.0%
! TCGTAAGTTTTCTCCACTGA+AGG + Chr5:42405848-42405867 None:intergenic 40.0%
!! CACTCAGTGAAATTGACTTG+AGG + Chr5:42408007-42408026 None:intergenic 40.0%
!! CTGGTTTCCTTGTTGTTCTT+GGG - Chr5:42407337-42407356 MsG0580026686.01.T01:intron 40.0%
!! TGGTTTCCTTGTTGTTCTTG+GGG - Chr5:42407338-42407357 MsG0580026686.01.T01:intron 40.0%
!!! GATCCGAATTTCGAGTTTTG+TGG - Chr5:42406351-42406370 MsG0580026686.01.T01:intron 40.0%
AAAAGCCCAAGCATACTGAG+TGG + Chr5:42409060-42409079 None:intergenic 45.0%
AAACACTGCAGTTCCTGCTT+TGG + Chr5:42409839-42409858 None:intergenic 45.0%
AAACCTCTAGGTCAGAGTCT+TGG + Chr5:42406252-42406271 None:intergenic 45.0%
ACAACGGCTGTTTAGAAGAG+TGG - Chr5:42406169-42406188 MsG0580026686.01.T01:intron 45.0%
ACCAAAAAGCAACCAACTCC+AGG + Chr5:42409299-42409318 None:intergenic 45.0%
ACTTCACACATTCGAGACGT+CGG + Chr5:42407062-42407081 None:intergenic 45.0%
AGATTGGAATGGTAGAGGCT+GGG - Chr5:42410410-42410429 MsG0580026686.01.T01:intron 45.0%
AGCAGCCAAGAGATTAGTGA+TGG + Chr5:42407434-42407453 None:intergenic 45.0%
AGGAGCAGTCCAAATTCAAG+TGG - Chr5:42407181-42407200 MsG0580026686.01.T01:intron 45.0%
AGTAGATAAATTAGCCCCCC+TGG + Chr5:42409675-42409694 None:intergenic 45.0%
AGTTCAAGACAGGGTGGTAA+AGG + Chr5:42410359-42410378 None:intergenic 45.0%
ATCACACACAACAACAGGCA+TGG - Chr5:42408412-42408431 MsG0580026686.01.T01:CDS 45.0%
ATCAGGACAGAGAACGACAA+CGG - Chr5:42406153-42406172 MsG0580026686.01.T01:intron 45.0%
ATCTCAGGCTCGAATCTATC+CGG + Chr5:42407154-42407173 None:intergenic 45.0%
CGAAATTCGGATCTTGCTTG+AGG + Chr5:42406344-42406363 None:intergenic 45.0%
CTCACATATGGGTAGCAAGA+GGG + Chr5:42408220-42408239 None:intergenic 45.0%
CTCCTTTGTGGATTTGGGAA+TGG - Chr5:42410447-42410466 MsG0580026686.01.T01:intron 45.0%
CTGAAATCCCCCAGTAACTA+AGG - Chr5:42408557-42408576 MsG0580026686.01.T01:intron 45.0%
CTGGTCTCCTTTGTGGATTT+GGG - Chr5:42410442-42410461 MsG0580026686.01.T01:intron 45.0%
CTTAGTTACTGGGGGATTTC+AGG + Chr5:42408559-42408578 None:intergenic 45.0%
CTTCTTGTCTCAGCTTTCTC+AGG - Chr5:42407501-42407520 MsG0580026686.01.T01:intron 45.0%
CTTGTCAAGGAAGGCTAAGA+CGG + Chr5:42408246-42408265 None:intergenic 45.0%
GAAGAGCGATGAAAAAGGAG+CGG - Chr5:42408621-42408640 MsG0580026686.01.T01:CDS 45.0%
GAGTTAGTTGAAATGGCTGC+TGG - Chr5:42405106-42405125 MsG0580026686.01.T01:CDS 45.0%
GATTTCAGGGAAGACCTATG+TGG + Chr5:42408545-42408564 None:intergenic 45.0%
GCCAGCTGTGATGACTTTAT+TGG - Chr5:42407366-42407385 MsG0580026686.01.T01:intron 45.0%
GCCATGGCAAATAGAACAGA+AGG + Chr5:42409005-42409024 None:intergenic 45.0%
GCCTTCTGTTCTATTTGCCA+TGG - Chr5:42409001-42409020 MsG0580026686.01.T01:intron 45.0%
GGAAACCAGCATGCATACTA+TGG + Chr5:42407326-42407345 None:intergenic 45.0%
GGTATCAGAGCTAGGTTACT+TGG + Chr5:42408314-42408333 None:intergenic 45.0%
TAGCCTTCCTTGACAAGGAT+TGG - Chr5:42408249-42408268 MsG0580026686.01.T01:intron 45.0%
TAGTCAAGATAGGTGTGCTG+AGG + Chr5:42407409-42407428 None:intergenic 45.0%
TCCACTTGTGAGCACTTTCT+GGG - Chr5:42410687-42410706 MsG0580026686.01.T01:CDS 45.0%
TCTATAACCTTCCGGAAGAG+CGG - Chr5:42408500-42408519 MsG0580026686.01.T01:intron 45.0%
TCTGTTCTATTTGCCATGGC+TGG - Chr5:42409005-42409024 MsG0580026686.01.T01:intron 45.0%
TCTTTCCAAGCACCTGCAAA+TGG + Chr5:42410143-42410162 None:intergenic 45.0%
TGACAAGTGGTATCAGAGCT+AGG + Chr5:42408322-42408341 None:intergenic 45.0%
TGGAAAGTTTCCGAGACAGA+GGG + Chr5:42406904-42406923 None:intergenic 45.0%
TTAGTTGAAATGGCTGCTGG+TGG - Chr5:42405109-42405128 MsG0580026686.01.T01:CDS 45.0%
TTCCACTTGTGAGCACTTTC+TGG - Chr5:42410686-42410705 MsG0580026686.01.T01:CDS 45.0%
TTCCGGAAGAGCGATGAAAA+AGG - Chr5:42408616-42408635 MsG0580026686.01.T01:CDS 45.0%
TTGGGAGATTGGAATGGTAG+AGG - Chr5:42410405-42410424 MsG0580026686.01.T01:intron 45.0%
TTGGTAAGTTCAAGACAGGG+TGG + Chr5:42410365-42410384 None:intergenic 45.0%
TTGTCTCAGCTTTCTCAGGT+AGG - Chr5:42407505-42407524 MsG0580026686.01.T01:intron 45.0%
! ACCTATGTGGGACACCTTTT+GGG + Chr5:42408532-42408551 None:intergenic 45.0%
! AGCTCTGATACCACTTGTCA+CGG - Chr5:42408322-42408341 MsG0580026686.01.T01:CDS 45.0%
! CAGTATGCTTGGGCTTTTGT+TGG - Chr5:42409062-42409081 MsG0580026686.01.T01:intron 45.0%
!! ACCTATTTCTGTACCGGTTC+CGG - Chr5:42408599-42408618 MsG0580026686.01.T01:CDS 45.0%
!! CGAATTTTTGAGCCAGCGTA+GGG - Chr5:42405621-42405640 MsG0580026686.01.T01:CDS 45.0%
!! CTCCTTTTTCATCGCTCTTC+CGG + Chr5:42408621-42408640 None:intergenic 45.0%
!! GCTGGTTTCCTTGTTGTTCT+TGG - Chr5:42407336-42407355 MsG0580026686.01.T01:intron 45.0%
!! TCGAATTTTTGAGCCAGCGT+AGG - Chr5:42405620-42405639 MsG0580026686.01.T01:CDS 45.0%
!! TGAAGGAGTGTTGTTTGTGC+AGG - Chr5:42410660-42410679 MsG0580026686.01.T01:intron 45.0%
!!! TCCTGGAGTTGGTTGCTTTT+TGG - Chr5:42409295-42409314 MsG0580026686.01.T01:intron 45.0%
!!! TTCTGGGGCGTTGTTTTGTT+CGG - Chr5:42410703-42410722 MsG0580026686.01.T01:CDS 45.0%
!!! TAAAAAAAAATAAAAGTATT+TGG + Chr5:42407101-42407120 None:intergenic 5.0%
!!! TAAAATATTTTAATACAAAT+AGG + Chr5:42407896-42407915 None:intergenic 5.0%
!!! TATAATTAATTTTAAGTTTA+TGG - Chr5:42406526-42406545 MsG0580026686.01.T01:CDS 5.0%
AGGTTCAGACTCTTGAAGGC+AGG - Chr5:42405058-42405077 MsG0580026686.01.T01:CDS 50.0%
AGTGCTAAGACCGTGACAAG+TGG + Chr5:42408335-42408354 None:intergenic 50.0%
CAAGACAGGGTGGTAAAGGA+AGG + Chr5:42410355-42410374 None:intergenic 50.0%
CCACTTGTGAGCACTTTCTG+GGG - Chr5:42410688-42410707 MsG0580026686.01.T01:CDS 50.0%
CCATGTCCCCAAGAACAACA+AGG + Chr5:42407347-42407366 None:intergenic 50.0%
CCTCACATATGGGTAGCAAG+AGG + Chr5:42408221-42408240 None:intergenic 50.0%
CCTCTTGCTACCCATATGTG+AGG - Chr5:42408218-42408237 MsG0580026686.01.T01:intron 50.0%
CTATAACCTTCCGGAAGAGC+GGG - Chr5:42408501-42408520 MsG0580026686.01.T01:intron 50.0%
CTCGCATCACACACAACAAC+AGG - Chr5:42408407-42408426 MsG0580026686.01.T01:CDS 50.0%
CTGTTGTTGTGTGTGATGCG+AGG + Chr5:42408409-42408428 None:intergenic 50.0%
GAGATTGGAATGGTAGAGGC+TGG - Chr5:42410409-42410428 MsG0580026686.01.T01:intron 50.0%
GATCCAAGACTCTGACCTAG+AGG - Chr5:42406246-42406265 MsG0580026686.01.T01:intron 50.0%
GGCCATTCCCAAATCCACAA+AGG + Chr5:42410452-42410471 None:intergenic 50.0%
GTGGAAAGTTTCCGAGACAG+AGG + Chr5:42406905-42406924 None:intergenic 50.0%
GTTCTATTTGCCATGGCTGG+TGG - Chr5:42409008-42409027 MsG0580026686.01.T01:intron 50.0%
TAAGACGGCGCCTCACATAT+GGG + Chr5:42408231-42408250 None:intergenic 50.0%
TCCGGAACCGGTACAGAAAT+AGG + Chr5:42408603-42408622 None:intergenic 50.0%
TTTATGGGAGGACAAGCTGC+TGG - Chr5:42410477-42410496 MsG0580026686.01.T01:intron 50.0%
TTTCATCGCTCTTCCGGAAC+CGG + Chr5:42408615-42408634 None:intergenic 50.0%
! AGGTGCCATAGTATGCATGC+TGG - Chr5:42407318-42407337 MsG0580026686.01.T01:intron 50.0%
! CGTCTTAGCCTTCCTTGACA+AGG - Chr5:42408244-42408263 MsG0580026686.01.T01:intron 50.0%
! GACCTATGTGGGACACCTTT+TGG + Chr5:42408533-42408552 None:intergenic 50.0%
! GCTGGTCTCCTTTGTGGATT+TGG - Chr5:42410441-42410460 MsG0580026686.01.T01:intron 50.0%
! TATATGGTGGAGAGCAAGGG+AGG - Chr5:42407298-42407317 MsG0580026686.01.T01:intron 50.0%
!! AGGAGGAGGAGTGTTCCTAT+TGG - Chr5:42408151-42408170 MsG0580026686.01.T01:intron 50.0%
!! AGGAGTGTTCCTATTGGGCT+GGG - Chr5:42408157-42408176 MsG0580026686.01.T01:intron 50.0%
!! ATTTTTGAGCCAGCGTAGGG+AGG - Chr5:42405624-42405643 MsG0580026686.01.T01:CDS 50.0%
!! CCTTGTTGTTCTTGGGGACA+TGG - Chr5:42407344-42407363 MsG0580026686.01.T01:intron 50.0%
!! GGAGGAGGAGTGTTCCTATT+GGG - Chr5:42408152-42408171 MsG0580026686.01.T01:intron 50.0%
!! GGTGGTGTTGTCCTTAGCAT+TGG - Chr5:42409026-42409045 MsG0580026686.01.T01:intron 50.0%
!! TTGTTGGCTGGTCTCCTTTG+TGG - Chr5:42410435-42410454 MsG0580026686.01.T01:intron 50.0%
!! TTTTTGAGCCAGCGTAGGGA+GGG - Chr5:42405625-42405644 MsG0580026686.01.T01:CDS 50.0%
AAGGACAACACCACCAGCCA+TGG + Chr5:42409021-42409040 None:intergenic 55.0%
ACCAGAGTCGGTCCTTGCTT+AGG - Chr5:42408445-42408464 MsG0580026686.01.T01:intron 55.0%
ATTTCCTTCCCTCCCTACGC+TGG + Chr5:42405636-42405655 None:intergenic 55.0%
CAGTGCTCATGGCATCGTCT+GGG - Chr5:42410800-42410819 MsG0580026686.01.T01:CDS 55.0%
CTAAGACGGCGCCTCACATA+TGG + Chr5:42408232-42408251 None:intergenic 55.0%
GATTCGAGCCTGAGATCTCG+AGG - Chr5:42407158-42407177 MsG0580026686.01.T01:intron 55.0%
GGTTGTGGGCATCCTAAGCA+AGG + Chr5:42408460-42408479 None:intergenic 55.0%
! AAGCAAGGACCGACTCTGGT+TGG + Chr5:42408445-42408464 None:intergenic 55.0%
! ATGGTGGGGCCTTATGTGGA+AGG + Chr5:42408184-42408203 None:intergenic 55.0%
! GCGCTTATGCATCGATGGTG+GGG + Chr5:42408198-42408217 None:intergenic 55.0%
! GGCGCTTATGCATCGATGGT+GGG + Chr5:42408199-42408218 None:intergenic 55.0%
! TCCTAAGCAAGGACCGACTC+TGG + Chr5:42408449-42408468 None:intergenic 55.0%
! TGGTAGAGGCTGGGCATTGT+TGG - Chr5:42410419-42410438 MsG0580026686.01.T01:intron 55.0%
! TGGTGGGGCCTTATGTGGAA+GGG + Chr5:42408183-42408202 None:intergenic 55.0%
!! AGAGGGCGCTTATGCATCGA+TGG + Chr5:42408203-42408222 None:intergenic 55.0%
!! ATCGATGGTGGGGCCTTATG+TGG + Chr5:42408188-42408207 None:intergenic 55.0%
!! CCCCAGAAAGTGCTCACAAG+TGG + Chr5:42410691-42410710 None:intergenic 55.0%
!! GAGGAGTGTTCCTATTGGGC+TGG - Chr5:42408156-42408175 MsG0580026686.01.T01:intron 55.0%
!! GCCCAAAAGGTGTCCCACAT+AGG - Chr5:42408528-42408547 MsG0580026686.01.T01:intron 55.0%
AACCTTCCGGAAGAGCGGGT+CGG - Chr5:42408505-42408524 MsG0580026686.01.T01:intron 60.0%
CTGCTCCTCCTCGAGATCTC+AGG + Chr5:42407169-42407188 None:intergenic 60.0%
GCAGTGCTCATGGCATCGTC+TGG - Chr5:42410799-42410818 MsG0580026686.01.T01:CDS 60.0%
GGTTGCGCACCAACCAGAGT+CGG - Chr5:42408433-42408452 MsG0580026686.01.T01:intron 60.0%
TCGAGCCTGAGATCTCGAGG+AGG - Chr5:42407161-42407180 MsG0580026686.01.T01:intron 60.0%
TGCAGCTGTCGCAGTGCTCA+TGG - Chr5:42410789-42410808 MsG0580026686.01.T01:CDS 60.0%
! AGAGGCTGGGCATTGTTGGC+TGG - Chr5:42410423-42410442 MsG0580026686.01.T01:intron 60.0%
! GGGCGCTTATGCATCGATGG+TGG + Chr5:42408200-42408219 None:intergenic 60.0%
AAGAGCGGGTCGGGCCCAAA+AGG - Chr5:42408515-42408534 MsG0580026686.01.T01:intron 65.0%
ACCTTCCGGAAGAGCGGGTC+GGG - Chr5:42408506-42408525 MsG0580026686.01.T01:intron 65.0%
AGCGGAACCGCACTGCTCTG+CGG - Chr5:42408639-42408658 MsG0580026686.01.T01:intron 65.0%
GGGCTGGGCCCTTCCACATA+AGG - Chr5:42408172-42408191 MsG0580026686.01.T01:intron 65.0%
GTGCAGACCGCAGAGCAGTG+CGG + Chr5:42408649-42408668 None:intergenic 65.0%
GTGGAAGGGCCCAGCCCAAT+AGG + Chr5:42408169-42408188 None:intergenic 65.0%
TGAGCCAGCGTAGGGAGGGA+AGG - Chr5:42405629-42405648 MsG0580026686.01.T01:CDS 65.0%
TTGGGCCCGACCCGCTCTTC+CGG + Chr5:42408514-42408533 None:intergenic 70.0%
GCCCGACCCGCTCTTCCGGA+AGG + Chr5:42408510-42408529 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr5 gene 42404977 42410834 42404977 ID=MsG0580026686.01;Name=MsG0580026686.01
Chr5 mRNA 42404977 42410834 42404977 ID=MsG0580026686.01.T01;Parent=MsG0580026686.01;Name=MsG0580026686.01.T01;_AED=0.47;_eAED=0.47;_QI=0|0|0|0.88|1|1|9|0|433
Chr5 exon 42410684 42410834 42410684 ID=MsG0580026686.01.T01:exon:18001;Parent=MsG0580026686.01.T01
Chr5 exon 42408590 42408652 42408590 ID=MsG0580026686.01.T01:exon:18000;Parent=MsG0580026686.01.T01
Chr5 exon 42408289 42408440 42408289 ID=MsG0580026686.01.T01:exon:17999;Parent=MsG0580026686.01.T01
Chr5 exon 42406680 42406818 42406680 ID=MsG0580026686.01.T01:exon:17998;Parent=MsG0580026686.01.T01
Chr5 exon 42406397 42406571 42406397 ID=MsG0580026686.01.T01:exon:17997;Parent=MsG0580026686.01.T01
Chr5 exon 42406098 42406135 42406098 ID=MsG0580026686.01.T01:exon:17996;Parent=MsG0580026686.01.T01
Chr5 exon 42405959 42406014 42405959 ID=MsG0580026686.01.T01:exon:17995;Parent=MsG0580026686.01.T01
Chr5 exon 42405287 42405661 42405287 ID=MsG0580026686.01.T01:exon:17994;Parent=MsG0580026686.01.T01
Chr5 exon 42404977 42405129 42404977 ID=MsG0580026686.01.T01:exon:17993;Parent=MsG0580026686.01.T01
Chr5 CDS 42410684 42410834 42410684 ID=MsG0580026686.01.T01:cds;Parent=MsG0580026686.01.T01
Chr5 CDS 42408590 42408652 42408590 ID=MsG0580026686.01.T01:cds;Parent=MsG0580026686.01.T01
Chr5 CDS 42408289 42408440 42408289 ID=MsG0580026686.01.T01:cds;Parent=MsG0580026686.01.T01
Chr5 CDS 42406680 42406818 42406680 ID=MsG0580026686.01.T01:cds;Parent=MsG0580026686.01.T01
Chr5 CDS 42406397 42406571 42406397 ID=MsG0580026686.01.T01:cds;Parent=MsG0580026686.01.T01
Chr5 CDS 42406098 42406135 42406098 ID=MsG0580026686.01.T01:cds;Parent=MsG0580026686.01.T01
Chr5 CDS 42405959 42406014 42405959 ID=MsG0580026686.01.T01:cds;Parent=MsG0580026686.01.T01
Chr5 CDS 42405287 42405661 42405287 ID=MsG0580026686.01.T01:cds;Parent=MsG0580026686.01.T01
Chr5 CDS 42404977 42405129 42404977 ID=MsG0580026686.01.T01:cds;Parent=MsG0580026686.01.T01
Gene Sequence

>MsG0580026686.01.T01

ATGGGTCAATCTAAGATTAGTCTTAAGGAATTGGCTAGTGTTAGACGCAAGATACCAGAATCTATAGATGACTATTTGAATAGGTTCAGACTCTTGAAGGCAGGATGTTTTACTCAAGTCCCTAAACATGAGTTAGTTGAAATGGCTGCTGATTCGAGCCTGAGATCTCGAGGAGGAGCAGTCCAAATTCAAGTGGAGCCAGATATTGAAATTGCTGTGATGACTTTATTGGAAAGGAGAGGTCGTCTTCCTCAGCACACCTATCTTGACTACACCATCACTAATCTCTTGGCTGCTGTTATCATTGCTTTCACCTTTGGTCAAATTGGCACTGATCATCCTAACTTCTTGTCTCAGCTTTCTCAGGATAACTTGCCTTCTGTTCTATTTGCCATGGCTGGTGGTGTTGTCCTTAGCATTGGAAATTTGTCCACTCAGTATGCTTGGGCTTTTGTTGGTTTATCAGTTGTTGAAGTTATCACATCAAGTATAACTGTTGTTATAGGCACAACATTGAATTATTTTTTGGATGACAAAATCAATAAAGCTGAGATTCTTTTTCCTGGAGTTGGTTGCTTTTTGGTTGCAGTTTGTTTAGGATCTGCTGTTCATTCATCTAATACTGCTGATAATAAGACTAAGCTCAAGGATTTTTCAAGTCATCATAAAGATGTAGTTCAGGGGGCTAATTTATCTACTTTGAATGAAGAAAGTAAAGATGATTCAAAGGATCTAGAGAATGGAAATGCAAACAAAGCCAAAGCAGGAACTGCAGTGCTTGGAAAGAGCACATTCATTGGGTTGGCTATAACTTTCTTTGCAGGAGTTTGTTTCTCCCTATTCTCACCAGCATTCAATTTGGCAACAAATGACCAGTGGCACACTTTAGATAAAGGGGTTCCCCATTTAAGTGTTTATACTGCCTTCTTTTATTTTTCAGTCTCTTGTTTTGTTGTTGCCATCATTCTAAACATCACCTTCCTTTACCACCCTGTCTTGAACTTACCAAAATCATCATTAAAGGCTTATTTGGGAGATTGGAATGGTAGAGGCTGGGCATTGTTGGCTGGTCTCCTTTGTGGATTTGGGAATGGCCTTCAATTTATGGGAGGACAAGCTGCTGGATATGCAGCAGCAGATGCTGTTCAAGCACTTCCACTTGTGAGCACTTTCTGGGGCGTTGTTTTGTTCGGCGAGTATAGAAAATCATCAAGGAGAACATATACACTGCTTGGGAGCATGTTGCTTATGTTCATTGCAGCTGTCGCAGTGCTCATGGCATCGTCTGGGCACCGAAAATGA
Protein sequence

>MsG0580026686.01.T01

MGQSKISLKELASVRRKIPESIDDYLNRFRLLKAGCFTQVPKHELVEMAADSSLRSRGGAVQIQVEPDIEIAVMTLLERRGRLPQHTYLDYTITNLLAAVIIAFTFGQIGTDHPNFLSQLSQDNLPSVLFAMAGGVVLSIGNLSTQYAWAFVGLSVVEVITSSITVVIGTTLNYFLDDKINKAEILFPGVGCFLVAVCLGSAVHSSNTADNKTKLKDFSSHHKDVVQGANLSTLNEESKDDSKDLENGNANKAKAGTAVLGKSTFIGLAITFFAGVCFSLFSPAFNLATNDQWHTLDKGVPHLSVYTAFFYFSVSCFVVAIILNITFLYHPVLNLPKSSLKAYLGDWNGRGWALLAGLLCGFGNGLQFMGGQAAGYAAADAVQALPLVSTFWGVVLFGEYRKSSRRTYTLLGSMLLMFIAAVAVLMASSGHRK*